CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	3 crisprs	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	0	11	3	0

1. NZ_CP006953

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006953_1

• CRISPR_ID: NZ_CP006953_1
• CRISPR_location: 229368-229554
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP006953_1

Consensus_repeat	Method
GGTAAAGATGGTGCAA	PILER-CR

spacers of NZ_CP006953_1

>1.1|229384|44|NZ_CP006953|PILER-CR
TCGGCGTTAAAGGTGCAGATGGTACAGCTGGTGTTACTTTAAAT
>1.2|229444|29|NZ_CP006953|PILER-CR
TCGGATTAACCGGTCCTAAAGGTGCTGAT
>1.3|229489|50|NZ_CP006953|PILER-CR
GTGCAACTATCTCTGTAAAAGACGGTGCTAAAGGTCTTGACGGCAACGAC

CRISPR arrays and Neighbor proteins around NZ_CP006953_1

CRISPR arrays

The CRISPR arrays of NZ_CP006953_1

>merge|NZ_CP006953|1|229368-229554|PILER-CR
GGTAAAGATGGTTCAATCGGCGTTAAAGGTGCAGATGGTACAGCTGGTGTTACTTTAAATGGTAAAGATGGTTCAATCGGATTAACCGGTCCTAAAGGTGCTGATGGTAAAGATGGTGCAAGTGCAACTATCTCTGTAAAAGACGGTGCTAAAGGTCTTGACGGCAACGACGGTAAAGATGGTGAAA

>NZ_CP006953|1|1|229368-229554|PILER-CR
GGTAAAGATGGTTCAA	TCGGCGTTAAAGGTGCAGATGGTACAGCTGGTGTTACTTTAAAT
GGTAAAGATGGTTCAA	TCGGATTAACCGGTCCTAAAGGTGCTGAT
GGTAAAGATGGTGCAA	GTGCAACTATCTCTGTAAAAGACGGTGCTAAAGGTCTTGACGGCAACGAC
GGTAAAGATGGTGAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006953.1|WP_025218118.1|212690_213335_+|RNA-pyrophosphohydrolase	unknown	unknown	gnl|CDD|234820
NZ_CP006953.1|WP_025342121.1|214133_214931_+|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl|CDD|234599
NZ_CP006953.1|WP_025342122.1|214998_215664_+|phosphoglycolate-phosphatase	unknown	unknown	gnl|CDD|237310
NZ_CP006953.1|WP_025342125.1|218652_219807_-|methylamine-utilization-protein-MauG	unknown	unknown	gnl|CDD|224771
NZ_CP006953.1|WP_025342132.1|239259_239694_+|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl|CDD|235383
NZ_CP006953.1|WP_025218108.1|233888_234164_-|RNA-chaperone-Hfq	unknown	unknown	gnl|CDD|179001
NZ_CP006953.1|WP_025218112.1|217912_218548_+|HTH-type-transcriptional-repressor-FabR	unknown	unknown	gnl|CDD|236881
NZ_CP006953.1|WP_025342130.1|237202_238441_+|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685
NZ_CP006953.1|WP_025342131.1|238442_239285_+|virulence-factor-BrkB-family-protein	unknown	unknown	gnl|CDD|179313
NZ_CP006953.1|WP_025342133.1|239726_240551_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl|CDD|234899
NZ_CP006953.1|WP_081732919.1|213337_214126_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|376667
NZ_CP006953.1|WP_081732920.1|234233_235193_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl|CDD|234626
NZ_CP006953.1|WP_025342124.1|217026_217920_+|DNA-binding-transcriptional-regulator-OxyR	unknown	unknown	gnl|CDD|182999
NZ_CP006953.1|WP_025342127.1|232472_233870_-|GTPase-HflX	unknown	unknown	gnl|CDD|182934
NZ_CP006953.1|WP_025342123.1|215718_216750_+|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NZ_CP006953.1|WP_025342129.1|235195_237082_-|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl|CDD|234630
NZ_CP006953.1|WP_025218119.1|211088_212522_+|sodium/pantothenate-symporter	unknown	unknown	gnl|CDD|236519
NZ_CP006953.1|WP_025342134.1|240602_241895_-|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl|CDD|283235
NZ_CP006953.1|WP_025342135.1|242066_242789_-|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl|CDD|235500
NZ_CP006953.1|WP_025218120.1|210865_211096_+|DUF997-family-protein	unknown	unknown	gnl|CDD|226437

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP006953.1|WP_025218118.1|212690_213335_+|RNA-pyrophosphohydrolase	gnl|CDD|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	6.04734e-99
NZ_CP006953.1|WP_025342121.1|214133_214931_+|prolipoprotein-diacylglyceryl-transferase	gnl|CDD|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	4.83208e-113
NZ_CP006953.1|WP_025342122.1|214998_215664_+|phosphoglycolate-phosphatase	gnl|CDD|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	4.03177e-115
NZ_CP006953.1|WP_025342125.1|218652_219807_-|methylamine-utilization-protein-MauG	gnl|CDD|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	5.03361e-76
NZ_CP006953.1|WP_025342132.1|239259_239694_+|D-tyrosyl-tRNA(Tyr)-deacylase	gnl|CDD|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.80514e-92
NZ_CP006953.1|WP_025218108.1|233888_234164_-|RNA-chaperone-Hfq	gnl|CDD|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	7.356e-45
NZ_CP006953.1|WP_025218112.1|217912_218548_+|HTH-type-transcriptional-repressor-FabR	gnl|CDD|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	7.87998e-121
NZ_CP006953.1|WP_025342130.1|237202_238441_+|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP006953.1|WP_025342131.1|238442_239285_+|virulence-factor-BrkB-family-protein	gnl|CDD|179313	PRK01637, PRK01637, virulence factor BrkB family protein.	3.32319e-132
NZ_CP006953.1|WP_025342133.1|239726_240551_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl|CDD|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.0651e-166
NZ_CP006953.1|WP_081732919.1|213337_214126_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.42158e-29
NZ_CP006953.1|WP_081732920.1|234233_235193_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl|CDD|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.47818e-164
NZ_CP006953.1|WP_025342124.1|217026_217920_+|DNA-binding-transcriptional-regulator-OxyR	gnl|CDD|182999	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional.	0
NZ_CP006953.1|WP_025342127.1|232472_233870_-|GTPase-HflX	gnl|CDD|182934	PRK11058, PRK11058, GTPase HflX; Provisional.	0
NZ_CP006953.1|WP_025342123.1|215718_216750_+|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP006953.1|WP_025342129.1|235195_237082_-|DNA-mismatch-repair-endonuclease-MutL	gnl|CDD|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP006953.1|WP_025218119.1|211088_212522_+|sodium/pantothenate-symporter	gnl|CDD|236519	PRK09442, panF, sodium/pantothenate symporter.	0
NZ_CP006953.1|WP_025342134.1|240602_241895_-|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl|CDD|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	3.13636e-139
NZ_CP006953.1|WP_025342135.1|242066_242789_-|3-oxoacyl-ACP-reductase-FabG	gnl|CDD|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	6.17117e-133
NZ_CP006953.1|WP_025218120.1|210865_211096_+|DUF997-family-protein	gnl|CDD|226437	COG3924, COG3924, Predicted membrane protein [Function unknown].	6.92856e-25

Protein sequences

>NZ_CP006953.1|WP_025342125.1|218652_219807_-|methylamine-utilization-protein-MauG
MLKPFALVFGLLLIAQTSFSLEKEPRTMPTRGMDKALLGQILFFDKMLSHGGGLNCASCHNPDKAFIDDRITPANGVVSQGDNPNKYGKRNSPTMLYAKYAPDFHFDEKNQEYIGGQFWDGRAKNLTEQAGMPPLDPNEMAMPSKLEVAKRLYSLPVYQQFFTQFYGEAVWDSYESAYAAMEDAIATFQTKKKLLAPFDSKYDLFLNKKVQLNELEEKGRILFFDKSQTNCSTCHQLQNHSMHKEETFSNYRYYNLGVPSNPKLIEVNGFTEDFIDLGLYENPNVNRDENQKGKFKTPTLRNVEMTAPYMHNGVFKELKTVLLFLDSYNNPARIINPETGKPWQKPEFAPTIAHNKLKAKPLSDEDILALEAFLKTLTDNRYQK
>NZ_CP006953.1|WP_025218112.1|217912_218548_+|HTH-type-transcriptional-repressor-FabR
MANGVSVRAIQKEKTRRALVEAAFNQLSPEKSFSNLSLREVAREAGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFELITDRPNVFRLLLRESSGTSLAFRTAASREIQHFVAELTDYIMSNDEPCNRKIAYIQAEGLVTLVFTAGSHALDMNNQERELLKQRVIMQLRMLIRGSAYYMKQSTCESL
>NZ_CP006953.1|WP_025342124.1|217026_217920_+|DNA-binding-transcriptional-regulator-OxyR
MNIRDLEYLIALADHKHFRRAAESCNVSQPTLSGQIRKLEDDLGTILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGIIPTLGPYISPIIIPALKEKFQHLELYIYELQTSQLLDQLESGQLDCGIISFVKESESFIEVPIFDEEMHLAISEQHEWAGLDKVGISLLSGRELLFLDGGHCLRTNTLDYCLSVGAKENPHFKASNLETLRNMVAANVGMALIPQLAAKETIGIKYLHFEEPKPFRAIGMVYRPGSPLRARYERLAQEVTKIMKSEVKNG
>NZ_CP006953.1|WP_025342123.1|215718_216750_+|tryptophan--tRNA-ligase
MTKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQHAITVRQDPEALRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFGEMSRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNVLYGKKDAEGNVIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELEAEFEGKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGADKARARARATLDKVYELVGFVRY
>NZ_CP006953.1|WP_025342122.1|214998_215664_+|phosphoglycolate-phosphatase
MKKYKVIGFDLDGTLINTLPDLTLVANAMFLEAGLPTVTQEKVLTWIGKGADIFFQNAIAHTGKIFQADELVKMRVSFDKYYATYVCEESSLFPNVKETLEALKAKGYPLVVITNKPTKLVEPVLSAFGIRHLFDETLGGQSLPKIKPHPDPMFFICEKFDITPQELLFVGDSENDIIASKAAGCDVVGLTYGYNYNVPIEQSEPTFVTSEFKDVLKIVGE
>NZ_CP006953.1|WP_025342121.1|214133_214931_+|prolipoprotein-diacylglyceryl-transferase
MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRRAKNSNGVWTTEQVDNLIYTGFWGVVLGGRIGDVFFYSFDRFLAEPLYLFRIWEGGMSFHGGLIGVIVAMIWVSHRQKRSFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVPWAVLFPSGGYLPRHPSQLYEAFLEGVVLLLILNWFIKKPRPTGSVAGLFLIGYGTFRFIVEYFREIDPNVNTTADLITRGQLLSLPMIIGGILIMMWAYKVNKMK
>NZ_CP006953.1|WP_081732919.1|213337_214126_+|sulfite-exporter-TauE/SafE-family-protein
MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGIPPEYIMSTALGTSFSTIIITAFSSAQRHHKLGNVDVQTSKSFIPALMISVFLSGLVVSKLDPQIMSKIFAVMVLYLAGKMLFTLKRAPKNKPLTLHTTLVGGGVIGTLSSMAGIAGGAFIVPFLSDRGLDIKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPALIGITATSFFTSKMGASAANALPVPMLKKAFALLLVVIAINMFLK
>NZ_CP006953.1|WP_025218118.1|212690_213335_+|RNA-pyrophosphohydrolase
MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGENIETAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFLLQLISDENLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNMQKNSEDRPLENSRTERTENVSHTSKKSFQDSAKSYKKENRKPYRGWYQHNQKGK
>NZ_CP006953.1|WP_025218119.1|211088_212522_+|sodium/pantothenate-symporter
MNNDMLIPLFAYLLFVFGVAFYAYKQRQGSSFISEYYIGGRSMSGFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALQARKHNSVTVNDMLLARYQNKFVVWISGFALLLSFFAMMSVQFIGAGRLLETTLGISYQTAVIIFAITVGLYTFVGGFRAVVLTDTIQGLVMIVGTTILLGGILYATDGVENAMNTLEEINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMAYKDSKALHRAMIIGTVVISILMLGMHLSGVLGRAIVPDLNIPDQVIPTLMIQVLSPVVAGIFLAAPMAAIMSSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKCFSTITTLSFTILLVFAALNPPDMLIWLNLLSLGGLEATFLWVIVLGLYWKKANAAGAICSMLAGLISYVIITTFKISIWGFHAIVPSLVIGLIAFIIGNQFGKKTQIS
>NZ_CP006953.1|WP_025218120.1|210865_211096_+|DUF997-family-protein
MYKQLEKEARWAILLTLLYLLGWVGFAYFSPQGRGILGFPIWFELSCILLPVIFTLVAIVVVKKVYKNIDLEVNHE
>NZ_CP006953.1|WP_025342127.1|232472_233870_-|GTPase-HflX
MLNESLPNSEEDSAFGFALSEASQISEINEATNETTEDGRDKAILVHLYLGQQKDVENLLEFKTLAESAGVEVLATLTTSRPSPHIKYYVGQGKAEEIAEAVEQLGATVVLVNHQLSPAQTRNLQSLCDCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRHLSTRLVRRVTNQDQQKGGSVGLRGPGETQLETDRRLIKVRIQQLLSRLEKVNKQRNQNRKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGTAILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDAADDRKNENIDAVNQVLDEIEALEIPTLLVFNKVDKLEGIGPHIERNDDGTPIAVYLSAQENLGIELLFQAIQEWLRSNLVRETVLLPVTAGAVYAQFKAENCIKAEHFNDFGERIVQIEVNEVQWHKWLKQFPELTEYAELAKWDN
>NZ_CP006953.1|WP_025218108.1|233888_234164_-|RNA-chaperone-Hfq
MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPARALSHNNNNNHSQQAQPAAEVAEQAE
>NZ_CP006953.1|WP_081732920.1|234233_235193_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MIKPNKPLALFLMGPTASGKTDLAIALRQELPVDVISVDSALIYKGMDIGTAKPSKAELELAPHRLIDILDPAESYSAMNFHADALREMAEITAQGKIPLLVGGTMLYYKALLEGLSPLPSADPAIRTDIEARAEQYGWAALHQELTNIDPVAGARINSNDSQRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIDLGFEDEVKRLFLREDLHINLPSIRCVGYRQMWEYLQGEISLDEAIFKGICATRQLAKRQITWLRSWQGELTWLDSLDPTSSKAKMMEKIDHYLKNCDNI
>NZ_CP006953.1|WP_025342129.1|235195_237082_-|DNA-mismatch-repair-endonuclease-MutL
MTNQSPKQLIHILPPQLANQIAAGEVVERPASVVKELLENSLDAGANNIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFRGEALASISSVSRLTLTSRTAEQSEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVIRRIALAKPNVSFTLSHNGKIVRQYRKVADQSVEQKQKRVAAICGEEFIQNANYIDWQHGDLHLHGWVGSPMLARPQNDLCYSYVNGRMMRDKTINHAIRQAYGESIATGNYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGVSNSLQQTQPTLELRNELNEPMPAYAKDTNRQAAGQNVFTQPKEPIQAGEFSQQNANRSTHSPFTPKFERSSSSQSAQKWYNELLSGSDIRAEKVERTAIQMPTFEPKVETKPEPVLQKMEQITPLATNHSQALAIVKNQAVLMKEGEDFYLIPLAKLAELKFTYQLSKGQAQALLIPLNLTLDEQQTTCWQQYKESLSELGFSITEKHWQEQTRLTLLSVPQAVREQNLQQLLFALFSQAQAVNLAEFFAKKCEIPTACSLSEVIALLSEIELYANGKKEIEKIRTYIDFSSYL
>NZ_CP006953.1|WP_025342130.1|237202_238441_+|glutamate-5-semialdehyde-dehydrogenase
MQMIELAQQAKQASVELAQFGNRQKNEALLTIADSLEQRATEILYANAKDIEFAQSQGISLAIIDRLLLNEERLKGIANDVRNVAKLADPVGQVIDGGVLDSGLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVVQDALEKAGLPKLAVQAVTDPDRGLLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPVIVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKSIAVEFLPKLVAKMQQLGVTIHSNDLQKIDGIEPLDQEKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQHSESILTSDYQAARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPMGLEALTTYKWVCEGDYLVRG
>NZ_CP006953.1|WP_025342131.1|238442_239285_+|virulence-factor-BrkB-family-protein
MLKRILEFLKLLAKRYTENNIAISAGYLTYSTMLAIVPSIIVLFSIFTFFPVFYEASEMLKAFIYDNFAPSASEMVSEYIELFVSNAKKMGIVSIIGLFVVSLMLIKSIDEALNTIWHNNKSRPMWFSFLLYFLILIFGPLLAGASIAITTYITSLAIFNGSGALSLGQHLLELMPFFLIWLLFTLVYKFIPVTKVKFKHAAIGALLAAVFFTLGKQAFIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAILKEMEEDREVYDRINSAG
>NZ_CP006953.1|WP_025342132.1|239259_239694_+|D-tyrosyl-tRNA(Tyr)-deacylase
MIGLIQRVKWAKVEVEGQTVGEIQHGLLVLLGVEKDDDQAKADKLLEKVLNYRVFSDEQDKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGAAPIDAERLYDYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV
>NZ_CP006953.1|WP_025342133.1|239726_240551_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETSVRGVEPYLKGQTIKQIIIRQPKLRWVVSPELSQMENAKIEAVERRAKYLIIRTDKGDILVHLGMSGSLGILPESQQKEIGKHDHVDLITQNGTVLRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSDDFTSDYLFAKSRKKTTACKTFIMTNEVVVGVGNIYACESLFMAGIHPELASQNLTKKQCERLVKTIKEVLTKAIIQGGTTLKDFIQPDGKPGYFAQVLQVYGRKGEACNDCGKPIETKVIGQRNTYFCPKCQKLPK
>NZ_CP006953.1|WP_025342134.1|240602_241895_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTKNTFIVGFMLFAIFFGAGNLIFPPKLGLDSGVDFLPSIIGFVLTGVGLPLLGIAVSGYYQGGYKEALSKNVHPYFSLLFLMAIYLTIGPFFAIPRTGATAYQMAVVPFIGESSTLSLLIFTLAYYLIAVWFSLNPSTVVDRIGAILTPVLLVAILALVVKAVILLGGNELPAVATKADPETPLFTGIVEGYLTMDALASITFSVIVISAIKAKGIGGKDLIKQTSMAGIIAAIALAAIYISLAWIGNHYPISAETLAELNTKGQNIGTFILNSVATDTFGEFGRTLLGVIVTLACLTTSIGLIVTTSEYFNEVFPKISYKIYVLIFSLISFAIANQGLDFVISKSVPVLLVLYPIAMTVIFLMFINIFIRLPLMAQRLPLALVTIVSILSVAGVEMMNSLPMKDISMEWIPFAIAGTVIGYLVGKKPN
>NZ_CP006953.1|WP_025342135.1|242066_242789_-|3-oxoacyl-ACP-reductase-FabG
MSKIALVTGATRGIGKAIAEELVAKGYTVVGTATSEKGAESISAYLGENGKGLVLNVADAESIDSVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDNDWFDIIQTNLTSVYRLSKAVLRPMMKKGGRIISIGSVVGSMGNPGQTNYCAAKAGLVGFSKSLAKEVASRGITVNVVAPGFIATDMTDELNEDQRNAILSQIPAGELGSPQDIAKAVAFLASDDARYINGETIHVNGGLYMG

Crispr_ID: NZ_CP006953_2

• CRISPR_ID: NZ_CP006953_2
• CRISPR_location: 733510-734206
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 10 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NZ_CP006953_2

Consensus_repeat	Method
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	PILER-CR
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	CRISPRCasFinder
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	CRT

spacers of NZ_CP006953_2

>2.1|733542|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
ATATCCGCATTCCGCTCACGGAAAGGGTGATCGTG
>2.2|733609|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GACTTCACCACAAACCCTTTGGCTTTCATTGTTT
>2.3|733675|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAG
>2.4|733742|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
AATTTCTGTGCCTTGGGTAGCATCTTGCATTTTG
>2.5|733808|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
ATCGAAAAATCAAACAATGAGCAACACAAAGCAGA
>2.6|733875|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
CAACAACTCACGCAAAAAATGATTAGCGTGGGTG
>2.7|733941|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TCGTCACCTACATACCAACGTCCTCCACGCCCGT
>2.8|734007|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
ATAGCCTAGGCTTACACCCTCATTTTCCTGCCGT
>2.9|734073|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TGCGAATCTGTCATAAGTCATCACCGGTACGGTTG
>2.10|734140|35|NZ_CP006953|CRISPRCasFinder
AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAA

CRISPR arrays and Neighbor proteins around NZ_CP006953_2

CRISPR arrays

The CRISPR arrays of NZ_CP006953_2

>merge|NZ_CP006953|2|733510-734206|PILER-CR,CRISPRCasFinder,CRT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAACATATCCGCATTCCGCTCACGGAAAGGGTGATCGTGGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACGACTTCACCACAAACCCTTTGGCTTTCATTGTTTGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACTTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAGGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACAATTTCTGTGCCTTGGGTAGCATCTTGCATTTTGGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACATCGAAAAATCAAACAATGAGCAACACAAAGCAGAGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACCAACAACTCACGCAAAAAATGATTAGCGTGGGTGGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACTCGTCACCTACATACCAACGTCCTCCACGCCCGTGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACATAGCCTAGGCTTACACCCTCATTTTCCTGCCGTGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACTGCGAATCTGTCATAAGTCATCACCGGTACGGTTGGCAGCCACGTTCGCGTGGCTGTGAGTTGAAACAACCCCTTTTTCTCTATCTGTTAAAGACATAAAAAGCGGTTACCTTCACGTAGCCATAAGTTGAAAT

>NZ_CP006953|2|2|733510-734139|PILER-CR
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATATCCGCATTCCGCTCACGGAAAGGGTGATCGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	GACTTCACCACAAACCCTTTGGCTTTCATTGTTT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	AATTTCTGTGCCTTGGGTAGCATCTTGCATTTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATCGAAAAATCAAACAATGAGCAACACAAAGCAGA
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	CAACAACTCACGCAAAAAATGATTAGCGTGGGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TCGTCACCTACATACCAACGTCCTCCACGCCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATAGCCTAGGCTTACACCCTCATTTTCCTGCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TGCGAATCTGTCATAAGTCATCACCGGTACGGTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC

>NZ_CP006953|2|1|733510-734206|CRISPRCasFinder
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATATCCGCATTCCGCTCACGGAAAGGGTGATCGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	GACTTCACCACAAACCCTTTGGCTTTCATTGTTT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	AATTTCTGTGCCTTGGGTAGCATCTTGCATTTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATCGAAAAATCAAACAATGAGCAACACAAAGCAGA
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	CAACAACTCACGCAAAAAATGATTAGCGTGGGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TCGTCACCTACATACCAACGTCCTCCACGCCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATAGCCTAGGCTTACACCCTCATTTTCCTGCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TGCGAATCTGTCATAAGTCATCACCGGTACGGTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAA
GCGGTTACCTTCACGTAGCCATAAGTTGAAAT

>NZ_CP006953|2|1|733510-734139|CRT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATATCCGCATTCCGCTCACGGAAAGGGTGATCGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	GACTTCACCACAAACCCTTTGGCTTTCATTGTTT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	AATTTCTGTGCCTTGGGTAGCATCTTGCATTTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATCGAAAAATCAAACAATGAGCAACACAAAGCAGA
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	CAACAACTCACGCAAAAAATGATTAGCGTGGGTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TCGTCACCTACATACCAACGTCCTCCACGCCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	ATAGCCTAGGCTTACACCCTCATTTTCCTGCCGT
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	TGCGAATCTGTCATAAGTCATCACCGGTACGGTTG
GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006953.1|WP_025247924.1|743403_744012_+|DUF2057-domain-containing-protein	unknown	unknown	gnl|CDD|234990
NZ_CP006953.1|WP_025342427.1|740278_740743_+|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606
NZ_CP006953.1|WP_025217622.1|744165_745557_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|234981
NZ_CP006953.1|WP_025342422.1|730676_731348_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|273040
NZ_CP006953.1|WP_025342418.1|724586_727016_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_CP006953.1|WP_025342428.1|740788_742294_-|apolipoprotein-N-acyltransferase	unknown	unknown	gnl|CDD|234721
NZ_CP006953.1|WP_025342416.1|721598_722561_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl|CDD|237898
NZ_CP006953.1|WP_025342426.1|737219_738305_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl|CDD|273015
NZ_CP006953.1|WP_025342429.1|742350_743265_-|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl|CDD|226910
NZ_CP006953.1|WP_025217628.1|738314_738962_+|riboflavin-synthase	unknown	unknown	gnl|CDD|236455
NZ_CP006953.1|WP_025342419.1|727035_727758_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187782
NZ_CP006953.1|WP_025342424.1|731954_732968_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_CP006953.1|WP_025342430.1|745622_749147_+|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl|CDD|236784
NZ_CP006953.1|WP_025342425.1|734307_736710_-|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NZ_CP006953.1|WP_025342421.1|729832_730675_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|187820
NZ_CP006953.1|WP_025342420.1|727754_729812_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|187887
NZ_CP006953.1|WP_025247931.1|733017_733311_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_CP006953.1|WP_025247927.1|738973_740173_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl|CDD|181774
NZ_CP006953.1|WP_025342423.1|731352_732033_+|hypothetical-protein	unknown	unknown	gnl|CDD|376175
NZ_CP006953.1|WP_025342417.1|722639_724403_-|hypothetical-protein	unknown	unknown	gnl|CDD|132588

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP006953.1|WP_025342419.1|727035_727758_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	2.1e-64	211.7	0.0
NZ_CP006953.1|WP_025342424.1|731954_732968_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.6e-146	482.4	0.0
NZ_CP006953.1|WP_025342422.1|730676_731348_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	1.3e-41	137.4	0.1
NZ_CP006953.1|WP_025342418.1|724586_727016_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	1.5e-62	206.6	0.6
NZ_CP006953.1|WP_025342421.1|729832_730675_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	8.5e-99	325.0	0.1
NZ_CP006953.1|WP_025342420.1|727754_729812_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.6e-171	565.1	1.2
NZ_CP006953.1|WP_025247931.1|733017_733311_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-27	90.6	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP006953.1|WP_025247924.1|743403_744012_+|DUF2057-domain-containing-protein	gnl|CDD|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	4.32083e-67
NZ_CP006953.1|WP_025342427.1|740278_740743_+|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	9.54177e-80
NZ_CP006953.1|WP_025217622.1|744165_745557_+|MATE-family-efflux-transporter	gnl|CDD|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	5.02795e-173
NZ_CP006953.1|WP_025342422.1|730676_731348_+|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.63434e-40
NZ_CP006953.1|WP_025342418.1|724586_727016_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.57671e-53
NZ_CP006953.1|WP_025342428.1|740788_742294_-|apolipoprotein-N-acyltransferase	gnl|CDD|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP006953.1|WP_025342416.1|721598_722561_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl|CDD|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP006953.1|WP_025342426.1|737219_738305_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl|CDD|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	5.07994e-133
NZ_CP006953.1|WP_025342429.1|742350_743265_-|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl|CDD|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.79768e-147
NZ_CP006953.1|WP_025217628.1|738314_738962_+|riboflavin-synthase	gnl|CDD|236455	PRK09289, PRK09289, riboflavin synthase.	2.50169e-115
NZ_CP006953.1|WP_025342419.1|727035_727758_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.94043e-92
NZ_CP006953.1|WP_025342424.1|731954_732968_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP006953.1|WP_025342430.1|745622_749147_+|exodeoxyribonuclease-V-subunit-beta	gnl|CDD|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NZ_CP006953.1|WP_025342425.1|734307_736710_-|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP006953.1|WP_025342421.1|729832_730675_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	7.17399e-112
NZ_CP006953.1|WP_025342420.1|727754_729812_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	3.71578e-166
NZ_CP006953.1|WP_025247931.1|733017_733311_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.34743e-32
NZ_CP006953.1|WP_025247927.1|738973_740173_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl|CDD|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP006953.1|WP_025342423.1|731352_732033_+|hypothetical-protein	gnl|CDD|376175	pfam18753, Nmad2, Nucleotide modification associated domain 2. A beta-strand rich domain containing a conserved cysteine and charged residues predicted to play a role in modified DNA base biosynthesis.	8.11918e-69
NZ_CP006953.1|WP_025342417.1|722639_724403_-|hypothetical-protein	gnl|CDD|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0

Protein sequences

>NZ_CP006953.1|WP_025247931.1|733017_733311_+|CRISPR-associated-endonuclease-Cas2
MMMLITYDISFDDPEGQKRLRHIAKHCLDYGVRAQYSVFECDVTPDQWVKLKQKLLATYNPELDSLRFYHLGSKWRNKVEHHGAKKAVDLFKDTLIL
>NZ_CP006953.1|WP_025342424.1|731954_732968_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPVHSIGHIFCFGNVLVSPFLLGFCGENNVNVAFFSENGRFLARLQGRQTGNVLLRRAQYKRSEENPVPIAKNIIAAKIQASKRVLQRRLRNHGDCEPVSQAVTALNISLKQLQKAENLELIRGIEGEAASRYFGVFQHLLSENVEFSFDGRNRRPPRDGVNALLSFLYSVLGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWVDRMVLSLINRGQIKPSDFIHESSGGVTLKPEVRKLIFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQSMLLARHLRGDLAEYPPFLMR
>NZ_CP006953.1|WP_025342423.1|731352_732033_+|hypothetical-protein
MKIKSYVITHDHGFAPNPYGGYLTLATCKPQIRRTANVGDIIVATGSRSGIYKNKLIYAGIICEIMHMDKYFCDPRFEIKKPSNKDECYLQGDNIYYKEHNDWKQLPNNYHDEEGINHDLKSKNVLICEEFWYFGNNAPLIPENLLEIIKIGPAHKNISDPKIISEFLDWISDFQRGLIGKPIGQTSLKVQNCNQPQVSSKCANSKTPSTSQPKAVTCTKNVKPWW
>NZ_CP006953.1|WP_025342422.1|730676_731348_+|CRISPR-associated-protein-Cas4
MPTVLQNSEQIRPLAGQESNKETLLIPLSALQHYAFCPRQCALIHNEQAWAENYLTAQGRVLHERVDSGEPETRKGVRFERTVHLCAEQLGLTGIADMVEYELASGKFKPVEYKHGKPKPTGMDEIQLCAQALCLEEMTGQRIEEGALWYQQTRHRHTVLFSDELRTQTLSVIQAVRSLLQSGQTPPPNYGKHCNACSLLEICQPKLLGRDRSVGYVLGLFGE
>NZ_CP006953.1|WP_025342421.1|729832_730675_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLTKKIDFALIIQVKNANPNGDPLNGNRPRTDFEGFGEITDVCLKRKIRDRLQDDGESIFVQSDEKKTDGMTSLANRAKDKDVGLGNDAFNAKKSNRDETAKKACEKWLDVRSFGQVFAFGKSDDGAGVSIAVRGPVTIQSAFSVEPVLITSTQITKSVSGEGDGSKKSSDTMGMKHRVDGGIYVAYGAMSPQLAERTGFSDSDADKIKSVLTKLFEGDASSARPEGSMQVLKLIWWEHNCKSGQYSSAKVHGSLNVNADGSYTLSQLEGLKPQEIDGF
>NZ_CP006953.1|WP_025342420.1|727754_729812_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMQKLYRTYNEVEKNPELLDSDKLMFAPLWHSPQTAHINITLDGEGNFIRAKVLSDKPILMLPVTESSEGRTSGLAPHALADSLQYIAKDLGLIFSEEIVKEVEADNGKKKKIKEKVELPIFKLYSEQLDSWCAYTKNPKIHAIKKYVHKGTVLSDLIKAKVIPTDENGQLLNNWSEKENNGRLKPELFNVLTKEQGKFEIRKALVVWSVEIPNDLIPETWKDTEVQRDWGEYYQSTLKSQFCSILGKESEIRESHPAKLTYSGDKAKLISANDKEGYTFRGRFENANQASSISAEVSHKVHAALRWLIDRQGIRNGEQVTVAWAISGKEVPSPLQDPFQNFDFDNADTSAVENNAEFHTSADSETKPDWSANIGKEAANIIKKRYHGYKAKLDHHEQISLLMLDSATPGRMALTYYQEFLPKDYFANLDAWLDDFTWFQRHTFEVKGGKKNEKRTLWLELPPSPFAIAQAVYGKSLNDTLKKQLYARLLPVIAGGKSVPIPYDLVQKSFQVACNPHCCDTWEWQRNIGVACGLYRGWRARHHKESERRTYDMSLDIKNRSRDYLYGRLLAVAENIESYALYLAGEKRSTNAERYMQQFADRPYYTWRNLELALRPYQERLKNNGKDTGRQAISEIMELFATEDYLNDEKLSGEFLLGYHCQKMEIARQVAELKAKSAKQTEE
>NZ_CP006953.1|WP_025342419.1|727035_727758_+|type-I-C-CRISPR-associated-protein-Cas5
MNNKISFRVWGRQALFTDPVTKIGGEKFSYPVPTYEALKGILRSIYWKPTLIWHIDRVRIMKQIRTQTKSTKPLDWNGGNTLAIYTFLQEVEYQVEAHFTWNEHWDELAGDRNPGKHMAIAERMLARGGRQDIFLGTRDCQGYVEPCQFGEGESFYDGTGGLDFGLMFHSFGYPEETGKHELISRFWNATMQNGVIEFPSVNDQSGRLKKRFIREMKPFKPFKRGENVKPVEDEEKELEL
>NZ_CP006953.1|WP_025342418.1|724586_727016_+|CRISPR-associated-helicase/endonuclease-Cas3
MKNEYFAHIRKSDEVIQSVLTHLLETAQIARILATKLDLAEAGELLGLMHDFGKYSEKFQKYIRRVTGMLNQADLDSEDETNGGDHSTAGAQWIYRRLIKYGSNGIGELCGQILGLCIASHHGAGLIDCLSPEGRAVWRDRFNKDDKDAHLSECAQKADKSILERAEQLASESLIQSLRKPIAAILSQQDVPFKIKELYLACLTRFLFSCLIDADRINSADFEREAQKEIRRFNEKPNWQQAIEALENHLSRFEIKYPIDQIRRNISKDCLTRAGDKQGIYSLTVPTGGGKTLATLRYALHHAQTHQLDRIIYIIPYTSIIDQNAQNVREILGDDWVLEHHSNIEPEKQTWQNKVLSENWDKPIIFTTMVQFLDAWFSGGTRGVRHIHAMTRSVLIFDEIQTLPIKCVHLFSNVLNWLAQFGKSTAVLCTATQPLLNQLKKPELGQVKLAENAELMGNQQNLTALFDDLSRVEIHYRSQAGGFSLENAGEFLLEQFKLHSSCLFIVNTKKWAQDLYRYCQEHHIPQDALFHLSTNQCSAHRKVIFEQIKDRLQNKEPVICISTQLIEAGVDISMACVIRALGGLDSIAQAAGRCNRHGEKEGKGQVYVLNLKEPNLEEVLPDITIGQDKAVRVFGEYEGKDILQPAAMTQYFKYYFHDRSDEMVYPLKNSTSGSLLDWLSDNCHNVYTPKNDRRTQPFPLLMQSFKSAGREFQVIDAPTQAVIVPYGEGKEIITTLCSVEDNKKKYEALAKAQRYSVNVFPNVWRKLAEAEALQETQAGSGIYYLDERHYLDEYGLCTDRAGNMTCYDF
>NZ_CP006953.1|WP_025342417.1|722639_724403_-|hypothetical-protein
MSEQTFITGKDAALEDSISTFQHKLKTLGFNIEEASWLNPVPNVWSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANGDFVHYPTEKWFPIEDEDVPPPEMMDDFLWEYFDPNGELTPELLVDLQSGNYDRGIVTLPYVRQSDNETVYIPQSIIANLFVSNGMSAGNTKNEARVQGLSEVFERFVKHRIITEAISLPEIPQSVIDDYPTIKASIEKLEQEGFPILCYDASLGGEFPVICVILLNPQNGTCFASFGAHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANMETHFIDSSGLISWDLFKRDADYPFVHWDFSGTTEQEFSNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMSNIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFIGVVAEKGSAMQTLRIGELKSMLHLALGNLEQALDWANWTANMNASVFTAERNNYYRCLISTIELFLDENREPTQYRSVFEKMYGEEAVEFAWNAVQGGNPFHGLTASDETLENMIAHQKLLNAYRKVQKAKVNPIAR
>NZ_CP006953.1|WP_025342416.1|721598_722561_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDFRPFYQQIATTSLSAWLETLPLQLKQWEKATHADYVKWAKVADFLPNSTACINLKDKVESIPTAPLSEGEIKQITHHLKQLMPWRKGPYHLHGIHIDTEWRSDFKWERVLPHLSPLEGKTILDVGCGSGYHMWRMVGEGAKIVVGIDPTELFLCQFEAVRKLLGNDRRANLIPLGIEQMQPLAAFNTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNDVLVPADRYAKMKNVYFIPSVPALINWLEKVGFKNVRCVDEAITTLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA
>NZ_CP006953.1|WP_025342425.1|734307_736710_-|endopeptidase-La
MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAMDSNKQLFLVTQQDPNKEDPSKDDMYSVGVTANIIQMLNLPDGTVKVLVEGQTRAKIEQIHDDENGFWAAIQPIYSEYDEENEELKTIAKTTLTEFENYVKNNKKIPAEIIPKLQKITLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRVKQQMEKNQRDYYLNEQIKAIQKELGNNDDVEQSELDKLKEKIDAAKLPTDVKDKLDGEFRKLKAMPQSSSEATVVRTYIDWILQMPWHKKSAVKKDLAKAQEVLDKDHYGLERVKDRIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAEIRGHRRTYIGAMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQNKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARDHLLAKQQENNGLKEGELTVEDSAILSIIRYYTREAGVRGLEREIAKICRKAVKALVLDKKLKSIKVTESNIEDYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKGKFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFYEKRDIHVHVPDGATPKDGPSAGIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPKENEKDLEEIPENAKAALRIHAVETIDEVLAIALENPPIGIEVLPKAEIKVKKSRAKATVQ
>NZ_CP006953.1|WP_025342426.1|737219_738305_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTDAKYMAYAIELAKKAQGWTNPNPLVGCVIVKDGNIVAEGYHEKYGEWHAERNAILRSEQDLTGATAYVTLEPCCHYGRTPPCSDLLIERGIKKVFIGSRDPNPLVSGKGAKQLRAAGVEVVEDFMRAECDELNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGEQARAKVQETRHKYSSIMVGVETVLADDPMLNSRMPNAKQPVRIVCDSQLRTPLDCKLVQTAKEYRTVIATLNDDTKAHEAYQQLGVDIVVTKADNKRVDLPDLLQKLGEMQIDSLLIEGGSNLNFSTLKSGCVNRVHCYIAPKLIGGKEAKTPIGGEGISNLAEAVKLELKSTELIGDDILLDYVVK
>NZ_CP006953.1|WP_025217628.1|738314_738962_+|riboflavin-synthase
MFTGIIEEVGQIAQIKKQGEFAVVTVKAKKVLTDVQLGDSIAVNGVCLTVTSFTKEQFTADVMSETLKRTSLGELSLNSPVNLERAMAANGRFGGHIVSGHIDGTGTVAEITPADNSTWYRIKTSPKLMRYIIEKGSITIDGISLTVVDCDAESFRVSIIPHTIKETNLGSKKIGSLVNLENDIVGKYIEQFLLKKEPENQPSKLTVDFLKNAGF
>NZ_CP006953.1|WP_025247927.1|738973_740173_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MFKFSTVEEAIQAIAAGKIILVSDDADRENEGDFICAAEFATPENINFMAKYGKGLICTPISTEIAERLDFHPMVVVNKDNHQTAFTVSVDHIETGTGISAFERSLTCLKMLDESAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAGLCCEIMAEDGTMMQMPELQAFAKEHNMPFITIQQLQEYRRKHDSLVDVVSVVNMPTKYGEFKAHSFVETLSGKEHVALVKGEIGNGENVLCRIHSECLTGDAFGSQRCDCGQQFAAAMSQVEAEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYYIAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHKMRHMFNF
>NZ_CP006953.1|WP_025342427.1|740278_740743_+|6,7-dimethyl-8-ribityllumazine-synthase
MATFQGNYVATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVEAENIDTVWVPGALEISIAAKKMAQSGKYDAIICLGAVVRGSTSHYDVVVNESAKGISSSALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKMLG
>NZ_CP006953.1|WP_025342428.1|740788_742294_-|apolipoprotein-N-acyltransferase
MNFAKNPPIITACIVALLLGAIGTFSYSPFDIWLLAFISCAGLIWAATLEQRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPVVVSYVAVFLLACYLAIYNLLFSVLSHQFKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPIFGVEGLTFLVIVASGYFVKILKQESKTLPSLALLAVVFSLSFATRFLNFVQIDEEKQPLVVSLVQGNIEQKMKWDPQHFNFSVKTYEQLILPHLGKTDVIILPESAIPALENQIGGILNALDNLSRQTGSEIIIGTLYENEKEELFNSAVLLGKNEPYDLHASERYNKHHLVPFGEYVPFGSVLDWMREVFILPINLSQGSFIQSPMMAKNNRFNLAICYEIIFGDQVQQNQKSQNADYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLVRAANTGITAVVDHNGKVTHQLPQFTADVLTSNIQPTKGNTPFKQFGTWLIYGLSLICLIISFLIRRR
>NZ_CP006953.1|WP_025342429.1|742350_743265_-|CNNM-family-magnesium/cobalt-transport-protein-CorC
MSDEQQSANISVNTTAEKSEKKSILHTLFGNLFQNEPKNREDLVEVIRDSVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIIFIDANEPLETFIDVIVESAHSRFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQEIIRPAVIVPESKRLDRMLKEFRSERFHMAVVVDEFGAVSGLVTIEDILEQIVGEIDDEFDEEEVKPIRQLSRHTYAVLPLTDIKKFNEFFATNFNDEEVDTIGGLVMKAFGYFPKRDEQIELEGLGFKITSANSRRLIQLRVTLSDEQLEKMEQYSQSEEE
>NZ_CP006953.1|WP_025247924.1|743403_744012_+|DUF2057-domain-containing-protein
MKLTKMALTAAALVVSSMSVAGTLSSSNMVEILAFDGQRVKKGTTSVQISDNKTHQVVIEIGGTVEGSFFTSDQIILTFQGTTENATIEPPRLKSKLDVRSFQDNQRVTIKSESGNVIAHKQDFLKGEGFLAKTRVEENLSKYNLGKNPASVEQFANAALEAKGQIIVDTNKVSESELQLLFQKADPKTQKRFLDWAKKNTK
>NZ_CP006953.1|WP_025217622.1|744165_745557_+|MATE-family-efflux-transporter
MNLRWQEYPHNASKLFKLSLPIFISQLSASGMGLADIVMAGLVSDDDVSAIAVSNSIYFPLFLFVLGLLNAITPTVSYLNGSGNRHLIAHQIRQGVWLVLATSVPLIAIFLNSHLILDLMETPAEFSLKSQQYLAVMAVGLVPALLSINLRCMNDGLSNPKPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATVMVNWIMFLMMLHYCYTNPAQKDIRLFEKWIEAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVASHQAALQTSSLFFMIPMSFGIATTIMVGQTLGEKNVEGAKILSYHALITATILAIIAAIIIIVLKDLIPFAFTSNPISIAITANLLIFAAVYQIPDAIQAVVNGILRGYKHTQPILYVTLFCYWIISIPLGYTLARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRQIQSVPAEQLIAKLERIK
>NZ_CP006953.1|WP_025342430.1|745622_749147_+|exodeoxyribonuclease-V-subunit-beta
MNNLNPITLPLNKSVLIEASAGTGKTFTIANIYLRLLLGVGCLPLTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDKVNGECIEGKSYANNLEFLEQLYPHIHHIHEALLRLSIAEREIDTASVFTIHSFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEDVWREQFYPQGVEESEIISTELATPERALNAVRNYLASELPEPKAFLAQDFTEQLAQYNRFIDEVKSYWKANGEALVEAIRHDLKNKTTLHGGWYRSATFETGVIVMNQWINSSNRDLPDEFHLFTVGRIAAGTKKSCEPMDLPQLAKNQDFLTAYQQQFKNSLKAILLYQFLIGLKTKLAEYKQSHPERGFDDLLTMLNQALKNPQTGKALAQKIRSIYPFAMIDEFQDTDLTQYEIFSQIFMEGQSDNGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNLFHFANDEKSPFLYDDIGFHPVETDGRKGKLISEQGHFVCYTSDKTKLDDVAEICAYQIHQQLNAMSGGNFGIKKNGEFKPFEPKDIAILVRKGSQAKRIKKALAKRNIKSVYLAESASVFGSEIATELCWILQAGLNPYNYKALLSALGSTLWGLSAVEIYRYKENEMLWDLKVNQFVEYSTIWKEQGILPMLHKIYLEQGIIERLKGLPNADRLITDLLHLTEILQETSQALESEAELVRWYEKEISSPDFNDEQQLRLESEEELIKIITIHGSKGLQYPIVWLPFAAEKSEGDTKVNLGLYRNQKGDLDWYLGEEEAKEQIQNEAYAEDLRLFYVALTRAESQLNLVLPKMISGWSPLHYLLAEGELPKDNVSVADYFEKKQISADIIEVAGHLPFSRWENDKTEESYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKAERVIDLAQDRDVHIELIEPDYTMETDAFSPFQFPHGIKVGTVLHSFFEHCRFSEQIDKESVAKVCEQLGLSEEWIEPTLGWFERILATPLPEANFCLKEIDETKRLNEWQFYLRLKNDKALHQLNALLKQHSPLAKNLPELQLPQLEGFVRGFVDCIVQMNGKFYLIDYKSNFLGYLPQNYSTENIQREMGRQRYDLQYLLYTLAVHRYLTVRLSENYDYERDFGGVAYLFLRAMNGESASGVYFDKPSKLLIEEMDRLFG

Crispr_ID: NZ_CP006953_3

• CRISPR_ID: NZ_CP006953_3
• CRISPR_location: 969371-970734
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 20 spacers

Consensus repeat of NZ_CP006953_3

Consensus_repeat	Method
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	PILER-CR
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CRISPRCasFinder
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CRT

spacers of NZ_CP006953_3

>3.1|969403|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TAAGACGGAGAAAACCACCAAACAACTTGCCAAAA
>3.2|969470|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
CAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA
>3.3|969537|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
AGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG
>3.4|969604|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA
>3.5|969670|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GTTGATGCCTGTAATACAACATACCCGTTTTAGGG
>3.6|969737|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT
>3.7|969803|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GTAGAGTTTGTTATCTGAAATAACTAATAATTGA
>3.8|969869|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG
>3.9|969936|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
AAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT
>3.10|970003|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC
>3.11|970070|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
CAATAGAATGGATTTAATGTGGTAAATATCCCCAT
>3.12|970137|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
CTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC
>3.13|970204|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA
>3.14|970271|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT
>3.15|970337|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
GCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA
>3.16|970404|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
ATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC
>3.17|970470|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
TCCTACATCGGCATTGATGCAAACGGCGTAGGTT
>3.18|970536|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
CAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG
>3.19|970603|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT
AATTGCGGTGATTGTGCCTTTTTGTTTATGGATT
>3.20|970669|34|NZ_CP006953|CRISPRCasFinder,CRT
CCAACGGACAATATCAAAGAGGTATTGGGGCAGG

CRISPR arrays and Neighbor proteins around NZ_CP006953_3

CRISPR arrays

The CRISPR arrays of NZ_CP006953_3

>merge|NZ_CP006953|3|969371-970734|PILER-CR,CRISPRCasFinder,CRT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTAAGACGGAGAAAACCACCAAACAACTTGCCAAAAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAAGCCTGATACTTTGCCTTTTACTAGCTGAACAAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTGGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTTGCTGTTGGGGATATAGCCACCAAGAGCAGTAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGTTGATGCCTGTAATACAACATACCCGTTTTAGGGGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGCTGGATAGCGTAAAAGAAAAACTAATCCCTGCTGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGTAGAGTTTGTTATCTGAAATAACTAATAATTGAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGATTGCCGAAGGGGATAACTACAAGGCAGTGAAAGGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAAAGGTTTTATTCTCAATCGACATTGCTTCTGCTTGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTAACCCCATTACCTAAAGAGCTAAAAATTTGTGCGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAATAGAATGGATTTAATGTGGTAAATATCCCCATGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCTCCACCGTGTCTTTGGCAAAATAACGCAAATTTCGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTGGTGGAATTGTCGGATTATTTTGTGTAGGATTAAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCTGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGCTATCGGTCATCATTGAGCAGCTCGGCTTATCCAGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCCGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTCCTACATCGGCATTGATGCAAACGGCGTAGGTTGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAGACGTGGCGAAACAAAAATTAATTTGCCCGCAGGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAATTGCGGTGATTGTGCCTTTTTGTTTATGGATTGCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCCAACGGACAATATCAAAGAGGTATTGGGGCAGGGCAGCTACCTTCGCGTAGCTGCAACTTAAAAT

>NZ_CP006953|3|3|969371-970668|PILER-CR
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TAAGACGGAGAAAACCACCAAACAACTTGCCAAAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTTGATGCCTGTAATACAACATACCCGTTTTAGGG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTAGAGTTTGTTATCTGAAATAACTAATAATTGA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAATAGAATGGATTTAATGTGGTAAATATCCCCAT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	ATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TCCTACATCGGCATTGATGCAAACGGCGTAGGTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AATTGCGGTGATTGTGCCTTTTTGTTTATGGATT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC

>NZ_CP006953|3|2|969371-970734|CRISPRCasFinder
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TAAGACGGAGAAAACCACCAAACAACTTGCCAAAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTTGATGCCTGTAATACAACATACCCGTTTTAGGG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTAGAGTTTGTTATCTGAAATAACTAATAATTGA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAATAGAATGGATTTAATGTGGTAAATATCCCCAT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	ATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TCCTACATCGGCATTGATGCAAACGGCGTAGGTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AATTGCGGTGATTGTGCCTTTTTGTTTATGGATT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CCAACGGACAATATCAAAGAGGTATTGGGGCAGG
GCAGCTACCTTCGCGTAGCTGCAACTTAAAAT

>NZ_CP006953|3|2|969371-970734|CRT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TAAGACGGAGAAAACCACCAAACAACTTGCCAAAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTTGATGCCTGTAATACAACATACCCGTTTTAGGG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GTAGAGTTTGTTATCTGAAATAACTAATAATTGA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAATAGAATGGATTTAATGTGGTAAATATCCCCAT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	GCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	ATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	TCCTACATCGGCATTGATGCAAACGGCGTAGGTT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	AATTGCGGTGATTGTGCCTTTTTGTTTATGGATT
GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	CCAACGGACAATATCAAAGAGGTATTGGGGCAGG
GCAGCTACCTTCGCGTAGCTGCAACTTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006953.1|WP_025342523.1|962763_963393_+|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl|CDD|234690
NZ_CP006953.1|WP_025342525.1|966661_969094_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl|CDD|237860
NZ_CP006953.1|WP_025217470.1|976033_976870_-|formyltetrahydrofolate-deformylase	unknown	unknown	gnl|CDD|235676
NZ_CP006953.1|WP_025342519.1|953073_954942_+|outer-membrane-protein-assembly-factor	unknown	unknown	gnl|CDD|223801
NZ_CP006953.1|WP_025217476.1|964860_965622_+|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|182827
NZ_CP006953.1|WP_025217475.1|965614_966490_+|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl|CDD|237229
NZ_CP006953.1|WP_038643146.1|975374_976007_+|membrane-protein	unknown	unknown	gnl|CDD|225500
NZ_CP006953.1|WP_025342527.1|972454_973957_+|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
NZ_CP006953.1|WP_025342528.1|974038_975112_-|homoserine-O-acetyltransferase	unknown	unknown	gnl|CDD|234678
NZ_CP006953.1|WP_025342521.1|959213_960980_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl|CDD|236870
NZ_CP006953.1|WP_025342518.1|952203_953064_+|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl|CDD|377404
NZ_CP006953.1|WP_025217469.1|976941_977361_-|H-NS-histone-family-protein	unknown	unknown	gnl|CDD|182380
NZ_CP006953.1|WP_025342530.1|981527_982340_+|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl|CDD|161792
NZ_CP006953.1|WP_025217468.1|977792_979331_+|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl|CDD|224671
NZ_CP006953.1|WP_025342522.1|960979_962647_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl|CDD|236865
NZ_CP006953.1|WP_025217466.1|980337_981528_+|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|235288
NZ_CP006953.1|WP_025342524.1|963426_964794_+|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|236452
NZ_CP006953.1|WP_025342520.1|955007_959111_+|translocation/assembly-module-TamB	unknown	unknown	gnl|CDD|225463
NZ_CP006953.1|WP_025342526.1|970830_972306_+|ribonuclease-G	unknown	unknown	gnl|CDD|183285
NZ_CP006953.1|WP_025342529.1|979565_980318_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|187604

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP006953.1|WP_025342523.1|962763_963393_+|high-frequency-lysogenization-protein-HflD	gnl|CDD|234690	PRK00218, PRK00218, lysogenization regulator HflD.	4.39879e-100
NZ_CP006953.1|WP_025342525.1|966661_969094_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl|CDD|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP006953.1|WP_025217470.1|976033_976870_-|formyltetrahydrofolate-deformylase	gnl|CDD|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.06742e-170
NZ_CP006953.1|WP_025342519.1|953073_954942_+|outer-membrane-protein-assembly-factor	gnl|CDD|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.62602e-160
NZ_CP006953.1|WP_025217476.1|964860_965622_+|DeoR/GlpR-family-transcriptional-regulator	gnl|CDD|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	6.46621e-118
NZ_CP006953.1|WP_025217475.1|965614_966490_+|4-hydroxybenzoate-octaprenyltransferase	gnl|CDD|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	7.69589e-169
NZ_CP006953.1|WP_038643146.1|975374_976007_+|membrane-protein	gnl|CDD|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.23081e-77
NZ_CP006953.1|WP_025342527.1|972454_973957_+|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP006953.1|WP_025342528.1|974038_975112_-|homoserine-O-acetyltransferase	gnl|CDD|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP006953.1|WP_025342521.1|959213_960980_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl|CDD|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP006953.1|WP_025342518.1|952203_953064_+|divergent-polysaccharide-deacetylase-family-protein	gnl|CDD|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	1.12672e-88
NZ_CP006953.1|WP_025217469.1|976941_977361_-|H-NS-histone-family-protein	gnl|CDD|182380	PRK10328, PRK10328, DNA-binding protein StpA.	2.55897e-33
NZ_CP006953.1|WP_025342530.1|981527_982340_+|tryptophan-synthase-subunit-alpha	gnl|CDD|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	2.77694e-125
NZ_CP006953.1|WP_025217468.1|977792_979331_+|Na+/H+-antiporter-NhaC-family-protein	gnl|CDD|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	5.48422e-94
NZ_CP006953.1|WP_025342522.1|960979_962647_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl|CDD|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP006953.1|WP_025217466.1|980337_981528_+|tryptophan-synthase-subunit-beta	gnl|CDD|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP006953.1|WP_025342524.1|963426_964794_+|adenylosuccinate-lyase	gnl|CDD|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP006953.1|WP_025342520.1|955007_959111_+|translocation/assembly-module-TamB	gnl|CDD|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP006953.1|WP_025342526.1|970830_972306_+|ribonuclease-G	gnl|CDD|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP006953.1|WP_025342529.1|979565_980318_+|SDR-family-oxidoreductase	gnl|CDD|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.8427e-148

Protein sequences

>NZ_CP006953.1|WP_025342525.1|966661_969094_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSEQTQLTSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAVIGDTQKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKEEHFKYEGGIKAYVEYLNEGKTHIHNTPFYLSTEKDGIGVEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVESSMNEALADYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLILQYNSVQKLIERLNRRYPTLLLNELIYSKPLSVEFAKNEANVTAWSEAFVAKLMEKEVSGSFYRASVEFNTERQIYEPEIVVTTHGMDTTYRIDYNFISSNEYARIVALGNELNDLLTDSAYVVRGERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDFIETNALYAQIDV
>NZ_CP006953.1|WP_025217475.1|965614_966490_+|4-hydroxybenzoate-octaprenyltransferase
MNKGSFFSKQKWTAYAQLMRFDKPIGTLLLLHPTLWALFVAADGMPPVSILLIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKIIFAVLLLFAFLLDLMLNRYAFLLSFFAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAFGAVSEALPFECWLLFLANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIALLQFITLILLSLVGVVQEYNIGYFIVLALSATLFIYQCWLTKKRERSECFKAFLNNHYFGLGVFIAILVGIYF
>NZ_CP006953.1|WP_025217476.1|964860_965622_+|DeoR/GlpR-family-transcriptional-regulator
MKQANRHKRIIDLVNLLGYVSTEELVAQMNVSPQTIRRDLNEMAENNLIRRHHGGAAAPSNTENSDYTHRKQFFSQEKNAIAQQVAKLIPNGASLFLDIGTTSEAVALALLSHKNLIVVTNNLNAAHILMKNPDCQITVAGGHLRSDGGLIGEETVRFINQFRLDFGILGISAVDLDGSMLDYDYHEVQVKRALMECSRQVLLVTDHSKFSRNAIVRLGNVKEVNYLFTDTDLPLELQTHLSQSDVIVKICNE
>NZ_CP006953.1|WP_025342524.1|963426_964794_+|adenylosuccinate-lyase
MELTALTALSPIDGRYQDKVSSLRPVFSEFGLLKFRVEVEVRWLQKLASHAQIKEVPAFSEKANDYLNQIVANFSLEDANRIKTIERTTNHDVKAVEYFLKEKCEALPELQAVSEFIHFACTSEDINNTSHALMLKTARAEVLLPEWKKLIDAIVELAKRYQSIPLLSRTHGQPASPTTIGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHLSAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTIIIDFDRDMWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQRDLTDSTVLRNLGVGLGYALIAYTSTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDEAAMREFIEKLDIPEHEKARLKEMTPATYIGYAVELVDKL
>NZ_CP006953.1|WP_025342523.1|962763_963393_+|high-frequency-lysogenization-protein-HflD
MADYHDITIAYAGVCQAANLVQQFAHKGTADRDAFRQSIRSLLVTQPESTLSVFGDDLSHIQMGLETALSQTGGGNGKLDTEVGRYWISLIALSQKLNKNPEAKQQLAQRLQQIERQLPLYEGDVLADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVRPDIQHKIRASLLAGIRAAILWQQVGGSRWQFLFSRKKIFNQAQQLYRQI
>NZ_CP006953.1|WP_025342522.1|960979_962647_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MKSLFPFFSLYQTHFGRLLLGIVLAILGLAASIGLLSLSGWFLAASFLVANAIIFNFFYPAGGVRGLAIFRTASRYFEKLVTHDATFRVLANLRVTVFKKLIPLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLISPFVSAVMIITFVAIGLSFVSVPLMLIICGTLLALLLIIPTVFYRLGLKLGKKAVQSRANYRSQFIEWVQLNAEFLLFGNLRQAAEKLQHTEREWLNAQGQESRLSGLSSGLLMLSNGILTCVVIYLASTAINVPTAQYPEALIALVVFCVMASAEILTPIGIAFLHLGQVITAAERINQITEQQPNVQFNGSAKWQTLSQNQPLVRFENVNFAYLNGEQQVLNNLSFEVLKGQKVAILGKTGSGKSTIFQLLNRNYDPTSGQIWLNNCKIEDFPEQTLRSKLVTLSQRVHIFSQTLKDNLLMGNATATDEQMIGVVQKVGLGYLLETEGLKLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLDRETEQQILNLILTHCAERTLLMITHRQSGLDKFDVVYRMDSGRLLN
>NZ_CP006953.1|WP_025342521.1|959213_960980_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKQRQRELQKWLKSQQKVIKKYMHLNVLLGLIGSLAMIAQMWLLATMLHKMIVQKQSPSMFLTEIWLLFLCFAIRACVIFMRERVGFKAGQTLRLHLREQILAKMEAVGPMTIQQKPAGSWAALMLEQVENLHNFYARYLPQQFLSLLVPLVILCFVFPTNWAAGLILLATMPLLPLFMILAGLKAVEANQRNIGILSRISGQFLDKLKGLETIRLFGQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTSVSIAVMAVYFGFIFLGELDFGYYGTGVSLFIGFFCLMLAPEFYQPMRELGVFYHDKAAAIGAADSIEKFLNEEVKTQRSHLQKSMENQPLVIEANACVILSSQGKALTQLLNFKLNANQHIALVGQSGAGKTSLMNMLLGFLPYEGSVKINGVELRELNLTEWRAKLAWVGQNPQLMRGSLKENILLGNATATEAEIAEALRLSKADEFVSRLGLEHQVQDSNIGISGGQAQRIAIARALLRRYELLLLDEPTASLDMESEQQVLEALHHLSREQTTLMITHRVEDLAKCDEIWVMKQGQIIQQGSFAELEHTGFFAELLRNELVHQGEI
>NZ_CP006953.1|WP_025342520.1|955007_959111_+|translocation/assembly-module-TamB
MMNEKKEIIDSQEIQAQQEKTHKKLKSKWRFLKWGICIFSILFLVLILFLCTGFGQRKTVQWVDQFVEPLQIGKVEGSIQDGLQLFDTQFITDGVNVQVGKADLHIDFNCLIKYEVCLNHFNVKDTKVVIDTRKLPPSQEKEDNTPFTELNLPLGISAKNITLENIDVSVDDMDIHLNHFTTSISGKGREVIVNPTTLDGLKLLLALKVEEELEPQAVDSDAENAKVAVTRNPANAQEAVDQVVQEAVEKTAEKVVEEFYQLQGKTTAEAEQQPHNKVDWAEIKAQLEQPILNKDIRLSLPLDLTIEQIYIANVSVAQKAQDEKGNLVEPISLINVNALQLQAQAKDELVTLQRLDFKSDQGDLTATGTLSLKDNYPLNWQLEGVEVKDAKVKLPFSHIDATLSGELYNKTMLNVKTEGAIKATLDGHIELATPKVPFDLMLKSESAKYPFAPQAGDDVLTLENIDIHLNGSPLAYNLAAKVSAKGMGIPLSSADLKGNGELTHFNIHDLLLNTLEGNAQLAGLIDWTEGVEWNSRFKLNNINTKALVPDWAAVLSGSLSTQGYAGRGNTGADWKADVSNIDIKGSLHKKNLQLTGNLNANNQQLLDVPGLSLVYGENKIDLKGLLGEKSDFYADIKAPNLQGLVPNLKAGINGNVKLSGKLAEPNVDLDLVASNVSYEQFKLQHLTAKGKITTEQTIQGDVELGLRQFAYNDIKVESATLLAKGNEANHSLKLTSKGNPAGADLQISGKFDRLQQIWEGQLSQVAIQSTEFGRFQTDKAVNVKYDNKAINANVSAHCWHNPKIHLCFPTAFNAGQEGKVPFDIRNFNLAVLQDYLDNTSQISGIVNAKGDAAWFKNKQPQVNLDLTSNSIKFVQKMEGGKTFPLTVSPLKINLKMSDNNLALKSNLRVENNGTLTTDIVMRDLNNARTLSGNINIDQLTLKLIHPLLERGDVVDGRINARLTVSGQATSPLLHGTLNLTGLKARSVTMPFDVTGGNLAMNFHGATSTLNGKLQTKESELRLEGDADWRNINAWKTRVHAQANRFRVDIPNLARVEISPDIQVVATSTLLTLSGNIDVPWARIEVEQLPEQAVSVSGDEVIMDGSARNKVPFNQRNIPTQTAGGMAIDADIKINIGNDVKLKAYGLNSNLNGLLSVRQGKQGLGLYGQVRLDEGRFAAYGQDLLIRKGNISFAGSPSQPYLDIEAVRNPDAMEDPTITAGVRVTGLADAPNVKVFSDPAMSQNEALSYILTGRSLESSGDAGSSNAVAAALLSMSLSKSSKLVGDVGSAFGLKDLSVSTAGIGDNTKVEFSASLSPRFRVKYGVGVFAPLTELTLRYNLTPRLYLQWVSNVNQAVDLMYRFQFDKLF
>NZ_CP006953.1|WP_025342519.1|953073_954942_+|outer-membrane-protein-assembly-factor
MKTKLHFLTICCLVAFASMAQAEQPQTNEQAQNNQQDRITDVDQERIGELEDTLSDDLDDEEKLEALVDLEVKGIHDKEAKKNVDLYLAQISNEYADGAERHQYLVQTTVDKALRALGYYNSQYQFVQLPRSGKKPLLVLNVELDKETVKIDETDIVLQGEAKNDEDFMALIKKAPKQGSRLNHKTYENFKGNIESNAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYDSGIRYRYGQINFVDSQIKEEYLRNILKINSGEHYFANDLSNLTQDYLSSNWFSSVMVEPHLNEQDKTVDLNVLFQPKKKNEVEIGIGYETEVGPRLQFNWKKPWRNKRGHSIDTRTYISAPEQRFEFGYNIPLKKDPLHYYYQISGTVENEDQKDTKSTAASFSLQRFWTRTTGWSFSAGVRARYDSFTQANDKFKTLLVYPTASLNRTRTDGKPYPLWGDSQKLTVNWGSKIFGSDVNFYSYKASTSFVRTYAGNHRFYLRAELGYLKANQFERIPPALRFFAGGDMSVRGFGYKDISPRDPVNGKRVGGSHLATGTLEYQYQVYPNWWGAAFYDVGLAANKFETKQLHHGTGLGVRWASPIGAIKFDVGMPVKSPDNKRGFQIYIGLGSDI
>NZ_CP006953.1|WP_025342518.1|952203_953064_+|divergent-polysaccharide-deacetylase-family-protein
MLKQIYKRLNFTTFLQITLILQLFLLFAPLAQAAKIAIVIDDVGYRVKGDREILSLPKEVSVAIIPDAPYATERARESYAQKRDILIHLPMEPKSRQFIEKNSIKIGDSEEKIRKLIGDSRGQVPYAIGLNNHTGSGATADVATMQPLMKVLKEQSLFFLDSKTIGNSIAAKTAREFGIPTLERNIFLDDSDELADVKKQFSQSIQYARRNGVAVVIGHPRKNTIAILKQHLATLPADIELIGIGTLWRNEKVVPEKPLIMLFEQEPALSSIPPYESIPLLRGIPR
>NZ_CP006953.1|WP_025342526.1|970830_972306_+|ribonuclease-G
MSSTELLVNVTPSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFVVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESETERERLKALVEPYCDELGGFIVRTAAEEAHEESLKQDVAFLKRLWRKVLERKTKYPAKSMLYGELALAQRVLRDFIGTHINAVWIDSKITCEQVKEFLTEFMPELTNSVSLYTGAKTLFDAYGVEESIQKALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEATQVIAHQLQLRNLGGIIIIDFIDMQEEEHRNLVLQSLQNALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPECQGRGTVKTVETVSYEIMREIVRVHHLFKAEKIHVYASKEVADYLINEESHAMLAELQAFIGAKIEIKVEPYYHQEQFDVVVM
>NZ_CP006953.1|WP_025342527.1|972454_973957_+|lysine--tRNA-ligase
MSAVENQELDLNGEMLARREKLTKIREQGNAFPNTFRRNALAKDLHAQYDEVEGEALKERNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLAESVYEEKVSLWDLGDIIGVEGTLFKTKTGELTVRCSEVQLLTKALRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGEYVFDFGKPFERITMHDAIVKYGNGIKREDLDSFEKSVEIAKGLGIEIQKSWGLGSVINAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFVVALEHGLPPTAGEGLGIDRLAMIFANAPSIRDVILFPAMRQK
>NZ_CP006953.1|WP_025342528.1|974038_975112_-|homoserine-O-acetyltransferase
MAQHITLFRETPLSLSLGGELSPINVAYQTYGVLNADKSNAVLICHALTGDAEPYYDTTAEKGWWQDFIGKGLAFDTEKYFFICSNVLGGCKGTTGPASINPKTNKPYGSQFPIITVQDIVNVQKALIDYLEIPTLHAVIGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPYFNNGDYYDGIAPDNGLKIARMLGMLTYRTDMQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEEAALKRIKANYVFITVTSDQLFKQVDVYKSKQKLEQAGVNLDFHEFHSDFGHDAFLVDYDFFEPMIRKGLEK
>NZ_CP006953.1|WP_038643146.1|975374_976007_+|membrane-protein
MVIKVFKCLSVLVLLLILGLLAVDAITSYIIRDKIYTDVKKLPHREYAVVLGTAKFYSKDVINRYYKYRLDAAKQLVQSEKVDLLLLSGDNKTPYYNEPKTMTNDLLKMGVPQRQIKQDYAGYTTFDSIIRATEVYKLPPFTIVSQKFHCERALFIAKFKNIDAICYAAKYPEGAYQVRLREILARAVMVFNLLMGKTPETLEDIPSKEK
>NZ_CP006953.1|WP_025217470.1|976033_976870_-|formyltetrahydrofolate-deformylase
MIEHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVDNETKRFFMRTELNGIFNDNTLLADLEFTLPEGSIYKLLPKQRKRIIILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHDTLKELVERFDVPFHLVSHENLTRVEHDKLLADKIDEYAPDYIVLAKYMRVLNPEFVARYPDRVVNIHHSFLPAFIGAKPYQRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLSDKVFVYKNKTIIL
>NZ_CP006953.1|WP_025217469.1|976941_977361_-|H-NS-histone-family-protein
MSDLKSLLNIRTLRALAKDLALEQLRSIAEKLDTIIAEKEEEIRKEEQERAKQLESLNKYTEMLKQDGLSIDELAQLLADKVIKGRKTAKARKAVAPRPAKYKFVDAEGNEKTWTGQGRTPKALQKALDKGKKLEDFAI
>NZ_CP006953.1|WP_025217468.1|977792_979331_+|Na+/H+-antiporter-NhaC-family-protein
MNLVDYSTSLWSVLPAVIALILAIVTRKVIVSLSIGIVFGAFMLTNSSFLDALTYIKNSVVSLVYKGSEEGLNTNNVNIILFLILLGVLTSLLSISGSNQAFANWAQKRIKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFHISRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITDYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGPMTRFERQAEHLAEVEEETIEVKGRMRNLVFPIIALIVVTVAMMIKTGADALAESNTPFSILGAFENTTVGISLVAGGIAALIVATICIMASGHISLKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVGEHIAAGFLPAILFVLAAFMAFSTGTSWGTFGIMLPIGAAMAVHSEPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVAAASIVGYLVVGFTQSALLGFVTTSAVMAALILIFKAKKQKK
>NZ_CP006953.1|WP_025342529.1|979565_980318_+|SDR-family-oxidoreductase
MKTALVTGATAGFGLAICKLLIQSGYKVIGTGRRAERLAELHLQFGEHFRPLAFDIQDPQAVQTALESLPQDWQQIDLLVNNAGLALGLEPAHKVDLNDWYQMIDTNIKGLVTMTRLVLPQMVERNSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKIYENVEFIRPEDVANIVLWLNQQPEHVNINRVEVMPVAQSSAALNIARNS
>NZ_CP006953.1|WP_025217466.1|980337_981528_+|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKQLEQAFVEAQQDPEFQAEFADLLKNYAGRPTALTLCRNLTKGTKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATSLACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVEKGSCSLKDACCEAMRDWAANYETTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQILEKEDRLPDAVIAAVGGGSNAIGMFADFIEESSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRADYVSITDQEALDAFQALAKNEGIIPALESSHALAYALKLIAQNPDKEQLLVVNLSGRGDKDIFTVDKILNGGN
>NZ_CP006953.1|WP_025342530.1|981527_982340_+|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPDFDRSFEIIETMIANGADALELGFPFSDPLLDGPVIQAANKRALDAGYSTDACFELIGKIRAKYPDIPIGLLLCANLIFVPTAEVFFKRCKENGVDAVLIADLPLLAAEEFVPTAKKHDIQPVFICPPNADQNTIERIAKLTEGYTYLVSRAGVTSAENQAHASNLDNLVEGLKRSNSAPILQGFGIAKPEQVKEALALGCDGAISGSAIVKIIERNLANQANLLKELGEFVKAMKEASRRE

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006953_2	2.7|733941|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	733941-733974	34	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	17667-17700	0	1.0
NZ_CP006953_2	2.1|733542|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	733542-733576	35	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	8742-8776	1	0.971
NZ_CP006953_2	2.2|733609|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	733609-733642	34	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	7615-7648	1	0.971
NZ_CP006953_3	3.12|970137|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	970137-970171	35	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	10146-10180	1	0.971
NZ_CP006953_3	3.15|970337|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	970337-970371	35	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	7561-7595	2	0.943
NZ_CP006953_2	2.3|733675|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	733675-733709	35	MK448349	Streptococcus satellite phage Javan176, complete genome	6296-6330	9	0.743
NZ_CP006953_3	3.7|969803|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	969803-969836	34	BK010646	TPA_exp: Bacteroides phage p00, complete sequence	1268-1301	9	0.735
NZ_CP006953_3	3.14|970271|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	970271-970304	34	KC460990	Serratia phage Eta, complete genome	11094-11127	9	0.735
NZ_CP006953_3	3.8|969869|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	969869-969903	35	NZ_CP013488	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence	14729-14763	10	0.714
NZ_CP006953_3	3.19|970603|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	970603-970636	34	MN694000	Marine virus AFVG_250M989, complete genome	47971-48004	10	0.706
NZ_CP006953_3	3.17|970470|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT	970470-970503	34	MH606185	Bacillus phage BSP38, complete genome	25335-25368	11	0.676

1. spacer 2.7|733941|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 0, identity: 1.0

tcgtcacctacataccaacgtcctccacgcccgt	CRISPR spacer
tcgtcacctacataccaacgtcctccacgcccgt	Protospacer
**********************************

2. spacer 2.1|733542|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 1, identity: 0.971

atatccgcattccgctcacggaaagggtgatcgtg	CRISPR spacer
atatccgcattccgctcacggaacgggtgatcgtg	Protospacer
*********************** ***********

3. spacer 2.2|733609|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 1, identity: 0.971

gacttcaccacaaaccctttggctttcattgttt	CRISPR spacer
gacttcaccacaaaccctttagctttcattgttt	Protospacer
********************.*************

4. spacer 3.12|970137|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 1, identity: 0.971

ctccaccgtgtctttggcaaaataacgcaaatttc	CRISPR spacer
ctccaccgtgtctttggcaaaataacgcaaattac	Protospacer
********************************* *

5. spacer 3.15|970337|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 2, identity: 0.943

gctatcggtcatcattgagcagctcggcttatcca	CRISPR spacer
gctatcggtcatcattgagcagcttggtttatcca	Protospacer
************************.**.*******

6. spacer 2.3|733675|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to MK448349 (Streptococcus satellite phage Javan176, complete genome) position: , mismatch: 9, identity: 0.743

ttctttggcgatttctccgctcatttcaacgagag	CRISPR spacer
cgtttttccgatttctccgctcatttcaccaatat	Protospacer
. .***  ******************** *.* * 

7. spacer 3.7|969803|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to BK010646 (TPA_exp: Bacteroides phage p00, complete sequence) position: , mismatch: 9, identity: 0.735

gtagagtttgttatctgaaataactaataattga	CRISPR spacer
attgagtttgttatgtgaaatatctaagtttttt	Protospacer
.* *********** ******* ****   **  

8. spacer 3.14|970271|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to KC460990 (Serratia phage Eta, complete genome) position: , mismatch: 9, identity: 0.735

ttagcctcttcgcctttggcattttttatccgct-----	CRISPR spacer
ttagccacttcgcctttggcaat-----tgcggtgataa	Protospacer
****** ************** *     * ** *     

9. spacer 3.8|969869|35|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013488 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence) position: , mismatch: 10, identity: 0.714

gattgccgaaggggataactacaaggcagtgaaag	CRISPR spacer
tactgccgaagggtataacgacaaggcaagcagta	Protospacer
 *.********** ***** ********.  *. .

10. spacer 3.19|970603|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to MN694000 (Marine virus AFVG_250M989, complete genome) position: , mismatch: 10, identity: 0.706

aattgcggtgattgtgcctttttgtttatggatt	CRISPR spacer
ctttgcagtgattgttcctttttgttcaatctta	Protospacer
  ****.******** **********.*    * 

11. spacer 3.17|970470|34|NZ_CP006953|PILER-CR,CRISPRCasFinder,CRT matches to MH606185 (Bacillus phage BSP38, complete genome) position: , mismatch: 11, identity: 0.676

tcctacatcggcattgatgcaaacggcgtaggtt	CRISPR spacer
aagttcatcggcactgatccaaacggcgttaagc	Protospacer
   * ********.**** ********** .. .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	535579 : 543397	6	Escherichia_phage(16.67%)	tRNA	NA
DBSCAN-SWA_2	793542 : 803395	10	Hokovirus(16.67%)	NA	NA
DBSCAN-SWA_3	1869967 : 1879647	9	Enterobacteria_phage(66.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP006953|535579:543397|DBSCAN-SWA
TTTAGTTTACTGCTTTAAATTGAATCACGCCTGCATCGGTAAAATTATTGTCGTCATCTTCATCTAAGAAAGTTTTTGGTTCGATTTTGATGTTATCAAAAGCCGTGTCGCCCTCCACACCTTCGATCATTTGACCGTGTTTAATGCCTTTGAAATCGAATAAATTCGGGTCGCATAGGTGCGATGGCACAATATCTTGCAAGGCACTGAACATTGTTTCCAAACGCCCCGGATATTGGCGATCCCAAGTGTTCAGCATCTCTTTTACCACTTGGCGTTGTAAATTCGGTTGCGAGCCACAGAGGTTGCACGGAATAATCGGGAACTGTTTTGCTTCGGCATATTTGATGATGTCTTTCTCTTTACAATAAGCGAGCGGACGAATCACGATTTGCTTGCCATCATCGGAAATCAGTTTCGGAGGCATACTTTTCATTTTGCCGCCGTAGAACATATTTAAGAAAAGGGTCGCCAGCATATCATCACGGTGGTGTCCGAGTGCGATTTTGGTTGCCCCAAGTTCGGTGGCGGTGCGGTATAAAATCCCACGGCGTAAGCGAGAGCAGAGCGAGCAGGTGGTTTTGCCCTCCGGGATTTTCTCTTTCACGATGCCGTAAGTATTCTCTTCCACAATTTTATATTCCACGCCGATGCTTTCTAAATAGCGAGGCAGCACTTCTTCAGGGAAGCCTGGTTGCTTTTGGTCTAAATTCACCGCAACCACGCTGAAATTCACCGGGGCACTTTGTTGGAGATTCAATAAAATATCTAATAGCGTATAGCTATCTTTTCCGCCCGAAAGGCAAACCATCACACGGTCGCCCTCTTCAATCATACCGAAATCGGCAATCGCATTGCCCACGTTGCGGCGTAAACGTTTTTGTAACTTATTGAAATTATAAGTGATTTTTTTCTCAGCTTTTTGTTGAATATCGTCTGTCATAATGTTTTGGGTAGCCTGATAAATAAGCAGCGTATAGTAAAGATTTCGCTACATTTTGCAAGTTAATTATTGAGTGTGAGGGTGGCAATATAATTGCAACTCACATCATTGTTTAGCCAGAATTTTTCGGTTAATGGATTGAAATGGTAGCCTTTCATCTCTTGGCAGCGAAGATCGGCTTGATCGCACCACGTTAACAGCTCCGCTGGTTTAATAAATTTTTCAAATTCGTGCGTGCCTTTCGGGAGCATTTTCAGCACATATTCCGCCCCAATAATCACGAGCATATAGGCTTTAAAGGTGCGGTTGATGGTGGAGAAAAACAGCACGCCGTTTGGTTTGAGCAAGGCTTTGCAACTTTGAATAATGGAAAGCGGATCAGGCACGTGCTCAAGCATTTCCATACAGGTAATCACATCGAATTTTTCTGCATTACAAGCGGTCATTTTTTCCAAAAAATCTTCAATCGTGGTTTGTTGGTAATCGATCTCTAAACCGCTCTGTTTGGCGTGTTGCTTGGCAATTTCTAACGGTTCGGTTGTCATATCAATGCCGGTGACGATGGCCCCTTGTTTTGCCATCGCCTCACTTAAAATACCGCCGCCGCAGCCGACATCGAGCACTTTTTTGCCGAATAAACCGTTCAATTTGTCTAAAATGTAGTCTAAACGCAGCGGGTTAAGCAGATGAATCGGCTTGAAACTGCCGTTCGGATCCCACCAAGTTTGAGCCATTTTTTCAAATTTTGTAATTTCTTGTTGATCAACATTTTGCATAAGCTGTTCCTATGGTAAATTTGGGCGTTACTATACCCGATTTAGTTTAAAAGGAAAATCAGAATGACCAGAATTAACCTTGTGCCACCAGCGGAATTGTGCGATCAACATCTGCTTGCCGAACACCGAGAACTGACCCGAATTCCGAATGCAGTGGCGAAAGGGAAATTTAGCCTCAAAGGGCAGCCTGCAGATTATAAATTGGGCGAGGGACATGTCCGATTTTTCTTCAACAAACTCACTTTTTTGAAAAAACGTTACGATGCTTTACACGAAGAATGCCTAGCAAGGGGCTTTAACGTGCAGTATTTTTGGGCGGAGGAGCTGCCTCAAGATCCGAGTTTATGGCTGGATTACGAACCGACAGAAACCGCTCTTGCCGTCAACCGAGAGCGAATTGAAATCAGAATGCCAGCAAAACCGCGTTTTACGGAAAGAAAATAACCGCTTGCACGCCCTTTTTATTGCTTTTTATGCTATAATCTCGCCAATTTTTCGCCTTATTTAAGGCTCTTTTACTACTAAAAATTAGGAAATTTCAATGAGCGAATTAGCCAAAGATATTATTCCCGTAAGTATTGAGGACGAATTAAAAACCTCTTACCTTGACTACGCAATGTCGGTGATTGTTGGGCGTGCATTGCCTGATGTGCGTGACGGCTTGAAACCGGTTCACCGCCGTGTGCTTTTCTCAATGGATCAAAACAGCAACACCTATAACAAACCACACGTGAAATCAGCCCGTGTGGTGGGGGATGTGATCGGTAAATACCACCCGCACGGTGACTCAGCGGTGTACGACACCATTGTGCGTATGGCTCAGCCGTTCTCACTTCGTTATATGTTAGTGGACGGTCAAGGTAACTTCGGTTCTATCGATGGCGATGCTCCGGCGGCAATGCGTTATACCGAAGTGCGTATGCAGAAAATTACGCAGGAATTGCTCACCGATTTAGACAAAGAAACAGTAGATTTCTCGCCAAACTATGACGGCAAAGAGATGATTCCTGATGTGTTGCCAACCAAAATTCCAGCCTTGTTAGTGAACGGTTCATCGGGGATTGCGGTGGGTATGGCAACCAATATTCCGCCTCACAATTTAGGCGAAGTGTTAGACGGCTGCTTGGCATACATTGAAAATGAAAATATCAGCGTGGAAGAGCTAATGGCTCACATTCCCGGCCCGGATTTCCCTACAGGGGCGATTATTAACGGTCGTAAAGGGATCGAAGAAGCCTACCGTACCGGTCGTGGCAAGGTGTATGTGCGTGCGAAAGCGAGCGTAGAAACCACCGACAAAGGGCGTGAGCAGATTGTGGTGACTGAACTTCCATACCAAGTCAATAAAGCGAAATTGATCGAAAAAATCGCCGATTTGGTGAAAGAGAAGAAAATCGAAGGCATCAGCAAAATCGATGACTATTCCGACAAAAAAGGGATCTCGATTGTTATTGAAGTCAAACGTGATGCAGTGGGCGAAGTGGTGTTAAATCACCTCTATTCTTTAACCCAAATGCAAGTGACCTTCGGTATCAATATGGTGGCGTTGGACAACGGTCAGCCGAAAGTGTTGAACCTCCGCCAAATCATTGAAGCCTTCGTGAAACACCGCCGTGAAGTGGTGACTCGCCGTACCATTTTTGAACTACGCAAAGCCCGTGAGCGTGCCCATATTTTAGAGGGCTTGGCGATTGCATTAGCGAATATCGACCCTGTTATCGAATTAATCCGTGCCTCCAAAACCGCTGAAGAAGCCCGTGAAGGCTTGCTTGCTCGCCCTTGGGCATTAGGCAACGTAGCCCCAATGTTGGAGGCTGCTGGAGTGGGTGCTTCTCGTCCGGAAGATTTACCGGAAAATTTAGGCGTGCGTGATGGTCAATACTATTTATCAGAAGCCCAAGCCCGTGCAATTTTAGAGTTACGCTTACACCGTTTAACCGGCTTAGAGCACGAAAAAATTGTTGAAGAGTACAAAGAATTATTAACTGAAATTGGTGAATTATTACACATTTTAACCAGTCCGGAACGCTTAATGGAAGTGATCCGTGAAGAGTTGGAGTTAGTGAAAGCGACCTTTAACGATGAACGCCGCACCGAAATTACTGCAGCCTCAGGCGACATCAACATTGAAGATTTAATCGCCCAAGAAGATGTGGTGGTAACGCTTTCTCACGCAGGCTATGTGAAATATCAGCCGCTTTCAGACTACGAAGCCCAACGCCGTGGTGGTAAAGGGAAGTCTGCGACCAAGATGAAAGAAGATGATTTCATCGAAAAATTATTGGTGGCGAACACTCACGACACCATTCTCTGCTTCTCAAGCCGTGGTCGCTTATATCAATTAAAAGTGTACCAATTACCGCAAGCCAGCCGTGGGGCAAGAGGCACGCCGATTGTGAATATTCTGCCGTTGGTGAAAGAAGAGAACGAGCGTATTACCGCAATCCTGCCGATTCCAAATGGCGAATTTAGTGCCGATAAATTTATCTTTATGGCAACTGCAAGCGGCGTGGTGAAAAAAGTCTCGCTCGATGCGTTCAGCAACGTTCGTTCAAGCGGTCTAATTGCATTAAAACTTCGCGAAGGCGATGAATTAATCGGTGTGGATATTACCGATGGCGAGAGCGAAATTATGCTCTTCTCGGCACAAGGTCGAGTGGTTCGTTTCGCAGAAAAAGCAGTGCGTGCAATGGGACGTACAGCAACCGGGGTGAGAGGTATCAAACTTGCAACGACTGAAATTTCAAGTGAAGAGATCGAAGAAGCAGAAATCATCGAAATTGAAAATGAGGAAGCGGAAGATTTAACAAGCGTGAGCCTAGACACCGACCGTGTGGTTTCTCTTGTGATTCCTCGCACCGAAGGCGATATCCTCACTGTAACCCAAAACGGCTACGGTAAACGTACCGTCATTGGTGAATACCCAGTGAAATCTCGTGCAACCAAAGGGGTAGTTTCAATCAAAGTGAACGAACGCAATGGTAAAGTGGTAGCAGCTGTTCAAGTTGAAGAAGCAGACCAAATTATGCTGATAACCGATGCCGGCACGCTAGTTCGCACTCGAGTGGCGGAAGTGAGTTTAGTTGGACGAAATACCCAAGGCGTTCGCATTATCCGCACCGCAGAAGACGAACAGGTTGTGAGCCTAGAGCGAGTTTGCGAACCGGAAGAGGACGATGAAACGACAGAAGCATTCGATGCGGAAACCGTAGAAACCTCAACCGAAGAATAATCTTAATTACACAAGCGGTCGTTTTTTCAGAGTATTTTGCAATTTGCAAAAAATAAGGAAAATTCGACCGCTTTTAGATCATAAAGTTAGAAAACACTATGGCATTACTCAATTTATCCAACGCCTACTTAGGTTTTGGCAATCATCCTTTATTAGATCATACTGAATTACACATTGAGCCGAATGAGCGAGTTTGTTTGGTGGGCAGAAATGGGGCGGGCAAATCGACTTTAATGAAAGTGCTTGCCGGCGAAGTGCAGTTAGACGATGGCAAACTGATTTTTGAAAAAGACATTGTGGTTACACGTTTAGAGCAAGATCCACCTCGTCATATTCAAGAAACTGTCTTTGATTATGTAGCGGAGGGGATCGCCCATTTAAGCGACTTATTAAAGCAATATCACCACATTTCGCAGCAAATGCTGACAGATTATAGCGATGAGCTAATGGCGAAATTGTCTGCGGTGCAGGCTCAACTTGAGCATAACAACGGCTGGCAGTTTGAAAATCGGATTCAAGACACCTTGAAATTACTGGAACTCGATCCGGAAAAACGGTTATGCGAACTTTCTGGCGGTTGGGTTCGCCGTGCAGCATTAGCTCGGGCGTTGGTGGCAGATCCGGATATTCTGTTGCTCGATGAGCCGACCAACCATTTAGACGTGGAAGCGATCACTTGGCTTGAAGAGTTATTGCTCAATTTCAAAGGTTCGATCATCTTTATTTCTCACGACCGTTCCTTTATCCGCAAAATAGCGACTCGTATTGTGGATTTGGATCGTGGCAAGTTGGTTTCCTACCCAAGCAATTATGATAAATATTTGGAAGAAAAAGCCGAAGATCTGCGTGTGGAAGCGTTACAAAATGAGCTTTTTGATAAAAAATTGGCTCAAGAGGAAGTATGGATTCGCCAAGGGATTAAGGCTCGTCGCACTCGTAACGAAGGGCGTGTACGTGCGTTAAAGGCGTTGCGGGAAGAACGCCGCAACCGCCGAGAAGTGCAAGGCACGGCAAAAATTCAGATTGATAATACTGCACGCAGCGGCAAAATCGTGTTTGAAGTGGAAAATGCCAGTTACGAAATTGAGGGCAAAACGCTGCTCAAAAACTTCACCGCCACCATTCAGCGTGGTGACAAAATTGCCTTGGTGGGGGCGAACGGCTGCGGCAAAACCACTTTCATCAAATTATTACTCGGTGAGCTACAGCCCACTTCAGGTTCAATCCGTTGCGGCACAAAGCTCGAGGTGGCTTATTTCGACCAATATCGAGCTGAACTGGATTTAGAAAAAACAGTGATGGATAACGTGGCAGATGGCAAGCAAGATGTGGAAGTCAATGGCGTAAAACGCCACGTTCTCGGCTATCTGCAAGATTTCTTATTCCCACCGAAACGGGCGATGACACCGGTAAAAGCCTTATCGGGTGGTGAGCGAAACCGTCTATTGCTGGCAAAATTATTGCTGAAGCCGAACAACCTCTTAATTCTGGACGAACCAACCAATGATTTGGACGTGGAAACCCTCGAATTATTGGAAGAGATGTTGGCGGATTATCAGGGCACGTTGCTGATTGTCAGCCACGACCGTCAATTTATCGATAACACGGTGGAAGAGTGCTATTTCTTCGAGGGCGATGGCGTGCTGAACAAATATATCGGCGGCTATTTTGATGCGAAACAACAGCAGGAAAATTACCACGCTACACTGGCATCAAATTCGCAAAAAATTGAGAAAAAACAACCGCTTGTAGAAGAACAGCCTAATCAAGAAAAGCCAAAAGCAGAGGCAAAAAAAGTTAAACTCTCTTACAAAGACCAACGTGAGCTAGAAGAACTACCGGCAAAAATGGAAGCCTTAGAAGCGGAAATCGAAGCCCTGCAAGCGGAAGTTAATAGTGCGGATTTCTTCACCAAAGATCAGGCTTACACCAACGAAAAACTGCAAAAACTGGCAGACACCGAAGCTGCCTTAGAGCAAGCCTTTGAGCGTTGGGAAGAGCTGGAAAATATTAAAAACGGAAATATCTAACGTAGGGGCGAATTATTATTCGCCCTTTGGCTAAAATGATTGGGCGAAAAATTTTTCGCCCCTACAGATGTAACATAAAATGACAGAAAGACTAGACAACTACGAACAACGTTTTGGTGGCATCGGGCGGCTTTATACACCAGAGGGATTGGAAAAGCTCCGCCGTTCGCATATTTGTGTGATTGGCATTGGCGGAGTGGGTTCTTGGGCGGTGGAGGCGTTGGCACGTTCAGGCATTGGCAAGATTACGATGATTGATATGGATGATATTTGCGTAACCAATATCAACCGCCAAATTCACGCAATGAGTGGCACAGTGGCTCAACTTAAAACCGAGGCAATGAAAGAACGGATTGAACGAATTAACCCTGAATGTGTGGTAGAGATTATCGATGATTTTATCACTCCCGAGAACATTCCGGATTACCTCAACTGTGGCTATGATTATGTGATCGATGCCATTGATTCGGTGAAAAACAAAGCGGCACTGATTGCTTATTGTAAGCGTCATAAAATCAAGCTGATTACCACGGGCGGAGCCGGTGGGCAGACTGATCCAACCAAAATTCAAATTACTGATTTAAGCAAAACGGTGCAAGATCCACTGGCTGCCAGGGTTCGTACCTTGTTGCGTAAAGAATATGGATTCAGCAACAAGAGTAAATTTGGCGTGGATTGTGTTTCGTCCACTCAACAATTAATTTTCCCGAAAATGAGCGAAGGCTGTGAGGTCTCTGCCACGATGAATTGTGCCAATGGCTTTGGAGCAGTGACGATGGTCACGGCAACATTCGGCTTTTTTGCGGTAAGCCGTGTAATTGATAAACTATTGAAGTAA

Protein sequences of DBSCAN-SWA_1

>NZ_CP006953|535579:543397|535579_536521_-|WP_025342307.1|tRNA|DBSCAN-SWA
MTDDIQQKAEKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVMVCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLFLNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQPNLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPNLFDFKGIKHGQMIEGVEGDTAFDNIKIEPKTFLDEDDDNNFTDAGVIQFKAVN
>NZ_CP006953|535579:543397|540627_542559_+|WP_025342311.1|DBSCAN-SWA
MALLNLSNAYLGFGNHPLLDHTELHIEPNERVCLVGRNGAGKSTLMKVLAGEVQLDDGKLIFEKDIVVTRLEQDPPRHIQETVFDYVAEGIAHLSDLLKQYHHISQQMLTDYSDELMAKLSAVQAQLEHNNGWQFENRIQDTLKLLELDPEKRLCELSGGWVRRAALARALVADPDILLLDEPTNHLDVEAITWLEELLLNFKGSIIFISHDRSFIRKIATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKARRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENASYEIEGKTLLKNFTATIQRGDKIALVGANGCGKTTFIKLLLGELQPTSGSIRCGTKLEVAYFDQYRAELDLEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLELLEEMLADYQGTLLIVSHDRQFIDNTVEECYFFEGDGVLNKYIGGYFDAKQQQENYHATLASNSQKIEKKQPLVEEQPNQEKPKAEAKKVKLSYKDQRELEELPAKMEALEAEIEALQAEVNSADFFTKDQAYTNEKLQKLADTEAALEQAFERWEELENIKNGNI
>NZ_CP006953|535579:543397|537838_540529_+|WP_025342310.1|DBSCAN-SWA
MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENENISVEELMAHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKIADLVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELLHILTSPERLMEVIREELELVKATFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGRTATGVRGIKLATTEISSEEIEEAEIIEIENEEAEDLTSVSLDTDRVVSLVIPRTEGDILTVTQNGYGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPEEDDETTEAFDAETVETSTEE
>NZ_CP006953|535579:543397|537360_537741_+|WP_025342309.1|DBSCAN-SWA
MTRINLVPPAELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPADYKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFNVQYFWAEELPQDPSLWLDYEPTETALAVNRERIEIRMPAKPRFTERK
>NZ_CP006953|535579:543397|536583_537297_-|WP_025342308.1|DBSCAN-SWA
MQNVDQQEITKFEKMAQTWWDPNGSFKPIHLLNPLRLDYILDKLNGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTTEPLEIAKQHAKQSGLEIDYQQTTIEDFLEKMTACNAEKFDVITCMEMLEHVPDPLSIIQSCKALLKPNGVLFFSTINRTFKAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLTWCDQADLRCQEMKGYHFNPLTEKFWLNNDVSCNYIATLTLNN
>NZ_CP006953|535579:543397|542638_543397_+|WP_025342312.1|tRNA|DBSCAN-SWA
MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWAVEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVEIIDDFITPENIPDYLNCGYDYVIDAIDSVKNKAALIAYCKRHKIKLITTGGAGGQTDPTKIQITDLSKTVQDPLAARVRTLLRKEYGFSNKSKFGVDCVSSTQQLIFPKMSEGCEVSATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025342307.1|535579_536521_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.0e-125	84.5
WP_025342308.1|536583_537297_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	A0A1X9I669	Streptococcus_phage	2.7e-05	29.0
WP_025342309.1|537360_537741_+	deoxyribonuclease	A0A023NGV8	Nitrincola_phage	2.0e-28	52.3
WP_025342310.1|537838_540529_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	A0A172JHV7	Bacillus_phage	1.1e-107	30.9
WP_025342311.1|540627_542559_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.0e-51	28.9
WP_025342312.1|542638_543397_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.3e-13	27.4

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP006953|793542:803395|DBSCAN-SWA
TATGCAAGTAAAAAAATTTAGTCAAAAATATGTAAATTGGGTATTAAGATTAGGGCGATTAAGAGCCTCTTTACTCGGTTTTTTTGTGGTCGCCATTTCCGCAATTTTAATTCAAAGTGGATTAACTTATCTATTTATAGGCAGAGTAGTTGTGGTGGATATCTTACGTTCCATCGCATTTGGCTTAATTTCTGCTCCTTTTGTACTCTATTTTTTTACACTTTTAGTCGAAAAGTTGGAGCGTTCTCGTTTACGCTTAGAAAAAGCAGTAAAAGATCTGGAAGAGCTTCGAGAGCAAGATGCTTATCTCCACGCTAAATTAGAGAAAAATAACCGAGATAAAACGATCTTAATGGCAACTATCAGCCACGAATTACGCACACCGCTGAATGGCATTATCGGTTTAAGCCAAATTTTGCTTGATGAGCAACAGAGTGAAAAACAACAAGAATATCTTAAAACTATTAATATGAGTGCAACAGCGTTGGCTCATATTTTTGGCGATATTATCGACTTAGAAAAAATTGACAGTAGCCGCATTGAGTTGTTTAGAAAAGAGGTTGAATTTGAGCAATTAATTCAAGATATCGCCAATTTCGGCAACTTTATGGCGGGAAATAAAAATATTGATTTTAAATTAAAATATCCACCTAATTTACCTAAATATATTTATACAGACTACGCCCGTCTAAGCCAAATTTTATGGAATTTAATCAGTAATGCCGTGAAGTTTACCTCAACAAGCGGTCAAATTTTGCTGGAAATTTGCCAATTAGAGAAAGAGCAATTCAGCTTTAGCGTGGCGGACTCGGGCATTGGTATTCCTGAAAAAGAACAACGCAAAATTTTTGATATGTTTTACCAAGCCGAAAACTCAAAAGAGAAAAAAGCACAGGGGAGTGGTATTGGCTTATCAGTTTCCAAGCGTATTGCGAAATTAATGGGCGGCGATTTAACGGTAAAAAGCCAAGAAAATCAAGGTTCAACCTTTACCCTAACTATTCACGCAGAAAGTACGGAAACTAAGCCTGAATTAGATATTCAAAAGCACGGGTTAAAAGTACTTTTAGTTGAAGATATTGAGATGAATGTGGTAGTGGCTCAAGCAATGTTAGAAAAAGTGGGCTGTGAGGTTGATGTCGCAATGACAGGAGAAGAAGCTTTTAAATGCTTTGAGCAAAATAGCTATGACTTAATTTTGTTAGATATTCAATTGCCAGATACTACAGGATTTGATATTGCACAAACATTAAGAAACCGTTATGAAAACGAGGAAATTGATTATTTACCGCTACTTATCGCTTTAACGGCGAATGTCATTCAAAATCAAAAAGATTATCAAGCACAAGGTATGGACGATGTACTTCGTAAGCCGCTCTCTTTAGAAGCCTTAGTGAATTGCCTAAATCACTATTTTGATAATGACTTTTTGCAAAAAAATGAAGAAAAACAACCGCTTGTAGATAATAATTCTGAAAATTTATCTTATAACATCACAATGCTAAATGAATTGGTTGAGGTAATGGGGAAAGCGAATGTTCTTGCTAATATGGATTTATTTGCTGAGTTAATGCCAGCTTATTTGGAAAATTTACAGCGTTATTTAACTGATTGGCAAATCACAAATTCTGCTGAAAGCCGTAAATTAACGGCGGACGAAGTCCATAAGATCAAAGGAGCATTGGCATCGGTTGGGTTACATCAACTACAACAAATTGCTCAACTTGCTCAATCAGATAATGGTGAGCAGTGGGAGCAAAATATTGCACAATGGGTAAGTGTGATTTATTCCGAATGGCAGACTGATTTACAATTAGCTAAGGAATATGTAGAGACGCACTGAGTGCGTCCTACGCTACCATTTCTTTATTTTCGGATTCACAAATTCAATCCCTTGATCTTGATAGGCTATTCCTTCCAACGTTAGCAGAAAACGTTTATTTGGCAAGCCGCCACCAAAACCGGTTAATGCTTGATTTTTACCGAGCACCCGATGGCAGGGGATAAGAATAGAAATAGGATTACGCCCGACCGCTCCACCTACCGCACGCATAGCACTTGGTTTGCCTAATTTTTTTGCAATTTCACCGTAGGTTGTGGTTTCGCCGTAAGGAATTTCACGCAAAATGCTCCAAACAGACTGTTGAAATTCCGTACCTTGTGGAGCAAGAAAATCTAACTGCTGAAAGGGAATTTTTTCCCCTGCGAAATAGCGGTCTAAAATCTCTTTTGTTTTGCAAAAAATTTCTAAAATTGAACCGCTTGTAGAGCTTGCTTTGGTAAATGGCTCAATAGAAGTTGTGCGTTGCTCTTGTTCAAATTCAATATAAATTAACCCTTCGTTTTGGGCGAGTAAAAGTAATCTACCTACTGGGCTTTGGTAATAATCGTAGTAAATTTGAGATTTCATTTTTAATCCAATAAAAAAGAGATGTAATTTAGTTTACACCTCTTTTAACATTAATTCATTAAATTAGAATTTATAGTTTACGTTTAAGCCGTAAAGGTTTGCACGTGATTTAACATTAAATACGGCACTACCTTCTTTAAAGCTATTTTTTGAACCTCTAAGATGAGCATAGCCTAAATCAGCAGAAAGGTTTGGAGTGAAACGGTAAGTTGCACCAACTGTGTACCAAGTACGATCTGTATCAGGAATTGAAATAGATGGGCTTCTTACACTTGCTGTTTCATCATAAGCAATACCTGTACGTAAGGTTAATGCTTCGTTTACATCATAAGAGAAACCTAATGCAACACGCGAAGAATCATTGTAATTTTCTTCTTTATGAAGAAGGACATTGCCTGATTCGCCATAAGCGGTTAAGGCTTTGAATTTTTCCCATTCTGTACGTTTGTAGCTATATTGCATTGCTAACTTGTCGGTTAATTTGTGATAACCTGAAATTTCCCAGTAAGCTGGAAGATGTAATGTTAAACGACCCGGGATCTCGTGTCCGCTGGTTGCTTGGCTCATTTTTGCTTGTTCTGCAATGATTGGATTGGCTAACAAAGGATTAAATGCCGTTGGGAAGGCATTTGAGTAATGACCTTTAAATTTCACATTTACTGCTGAGTGATAAGCAACACCTAAACGGTTTCTTTCATTGATTTCATACATTAAACCTGCGTTCCAACCTAGACTCCATTTATCACCTTTAACACGGGCAAGTTCAATATTATTCTGCATTTGTTTAAGCGAAGCTGCTGCCATAGGGGCTGCCACTTGTAGCATAGGACTTTGAGATAATAATTTACCTCCCACGCCTAAATGACGAATAAATTCTGCTTCGGAGTAAAGCACATTTAAGCCTGCGCCAGCACTGAAACCATAGCCTAAATTATAAGCACCGCTTAAATTAAAATTGATTGCTTTTAATTCGGTATTACCGCCGTACATACCGGCATTGAAATCAGGATCGAAGTGTGACTTCATACCATAGTTTACGTTCATTCCACCACCAATGACGAAACGATCATTGATTGGAGAAACAATGTATAAATTTGGAACTACTGCTGTAGGAATAATATTTTTTTGTGAAGCTTTGAATACGCCACCAAGAGAGCCATCAACATCAACATCAGCATTTACAACAACTCCACCCGCAGAAAGCTCAGTTTGTTTGAATAATGTCATTAATGCAGGGTTGGTTGCCACAACAGATGCGTTATCTGCTACAGCAGCATCACCTGCATAAGCTCTACCCAAGCCGGATGTTGAAACTTCAGCTAATTGGAAGGCCGCCGCCTGAGCAGCGTTTGCTGAACAAAGTGTAACTAATGATGCAAGTAATGTTTTTGAAAAAATTTTCATAATAAGTCTCTTAAATAATATGAAAAAGAATTAGTTATCAATAATAAATTGGGGATTGTTAAAAAGTATAACGGACCGATTTTAGAGAGCAAGGCGTATGCTATCAATCACTTTTTACAAAATTTCAACTGTTCCGATCAGTTAATATAAATAGTAATGAAGTTATATTGTTTAGAAATAAGTTTATTCTTTGGTATTTGGAGTTATTTTTTCGTATAATATTTTTACTTTTTTTAATATATAAAACCTTTCACACTAATTAGTACTAAATGATTGACTAAATTGGTAGGTTATATCAAAATTTACACATTATCCTAGAGACTTTTTTCTAGGTAAAACTATGAGGATATTTTATGAAACTTACCTCAAAAGGGCGTTATGCAGTAACAGCTATTATAGATATTGCCTTACACGGTAAATCAGAGCCTGTAAGTTTAGCGGATATTTCAGATCGCCAAGCGATCTCCCTTTCTTATTTAGAGCAGCTTTTCGCACAGCTTCGTCGAGATGGTATTGTGCAGAGCGTTCGAGGTCCGGGGGGCGGTTATCAATTAGGTAAAGACCCAGAAGAAATTAGCGTAGGAATGATTATTTCTGCGGTTAATGAAAATATTGATGTTACTAAATGTAAGGGTAGTGGTAACTGCCGTAAAGATTCTCAATGTTTAACGCATTCTTTGTGGGAGCGATTAGAAGATCAAATTGAGCAGTTTTTAGGGACAATTTCAGTGGCAGATTTAGCCGCAGAACATGCAGATCACGATTGTGAAAAAGCTCATTGTCACGAACGCCCTCATCATCACTAATTGCAAAATTTTTAATAAAAACAACCGATTGTGAGTTGTTTTAACTAGGAGTAACAATGAAATTACCAATTTATTTGGACTATGCGGCAACCACGCCAATGGACGAACGTGTTGCGAAAAAAATGATGGAATATATGACCAAAGACGGTATCTTTGGTAACCCGGCTTCTCGCTCGCACAAATTTGGTTGGGAAGCGGAAGAAGCGGTTGATGTGGCTCGTAACCAAATCGCAGACTTAATCGGTGCCGACAGCCGTGAAATCGTATTCACTTCAGGTGCAACAGAATCTGACAACCTTGCAATCAAAGGTGCTGCACACTTCTACCAAACAAAAGGTAAACACATCATCACAGTTAAAACTGAACACAAAGCGGTATTAGATACTTGCCGTCAGTTAGAGCGTGAAGGTTTTGAAGTGACTTACTTAGATCCTGAAGAAGACGGTATCTTAGATTTAGCAAAATTAGAAGCGGCGATTCGTCCTGACACTATCTTAATTTCGGTAATGCACGTCAACAACGAAATGGGTGTGATTCAACCAATTAAAGAGATCGGTGCAATCTGCCGTGCGAAGAAAATCATTTTCCACGTAGATGCAACCCAATCTGTAGGTAAAATCGAAGTAAACGTACAAGACTTAAATGTAGATTTAATGTCTTTCTCAAGCCACAAATTATACGGACCAAAAGGTATCGGTGGTTTATACGTTTGCCGTAAACCACGTGTTCGCTTAGAAGCGATCATTCACGGCGGTGGTCACGAGCGTGGTATGCGTTCAGGTACATTACCTGTTCACCAAATCGTAGGTATGGGCGAAGCGTATCGCATTGCTAAAGAAGAAATGGCAAGCGAAATGGCTCGTTTAACCGTATTGCGTGACCGTTTATATAACGGCTTCAAAGATATCGAAGAAGTGTATGTAAACGGCTCAATGGAAGAAGGCAAACGTGTAGGTTCAAACTTAAACATCAGCTTTAACTTCGTTGAAGGTGAATCATTAATGATGTCATTGCGTGATATCGCCGTATCATCAGGTTCAGCTTGTACTTCTGCAAGTTTAGAGCCATCTTACGTGTTACGTGCTATCGGCCGTGATGATGAATTAGCTCACAGCTCAATTCGTTTCACCTTAGGTCGTTGGACAACAGAAGAAGAGATCGATCACACTATCGAAATCGTGAAAAGAGCAATCGTGAAATTGCGTGAACTTTCACCACTTTGGGAAATGTTCAAAGAAGGGATTGATTTAAGTAAAATCGAGTGGAACCATCATTAATTAATAAATTAAATTGGAAGGAATACAAAAATGGCATATAGCGAAAAAGTAATCGATCATTACGAAAACCCACGCAATGTAGGTACATTCGATAAAGAAGCTGCAGACATCGGTACAGGTATGGTGGGCGCTCCGGCGTGTGGCGATATTTTACGTTTACAAATTAAAGTAAATGATCAAGGTATCATCGAAGATGCACGCTTTAAAGCGTATGGTTGTGGTTCTGCAATTGCATCAAGCTCATTAATCACTGAGTGGGTAAAAGGTAAATCTTTAGATGAAGCGGGTGCAATTAAAAACAGCGACATCGCAGAAGAGTTAGAATTACCACCAGTAAAAGTTCACTGTTCAATTCTTGCAGAAGATGCGATTAAAGCAGCAATCGCAGACTATAAAGAAAAACAAGCGAAGTAATATGATACAATGAATGCAAGCGGTCGATTTTTGCAAAAAATTTGCAAAATTTCACCGCTTGCATTTGCTATTTCTATCTTGATTTAATCCATTCACATAAGGACAGCTATGAGTATTACCTTAACAGAAGCCGCCGCAAACCGAGTTCGTACATTTTTAGAAAACCGTGGAAAGGGCATTGGCTTAAGGCTCGGCGTGAAAACATCAGGTTGTTCGGGGTTAGCCTATGTGCTGGAATTTGTTGATGTATTAAATGAAGACGATCACGTATTTGAGCAACACGGGGTAAAAGTGATTGTGGACGAAAAAAGCCTCACTTATCTTAACGGTACGCAATTAGACTTTGTGAAAGAAGGCTTAAACGAAGGCTTTAAATATACCAACCCAAATGTCAAAAATGAATGTGGTTGTGGCGAAAGTTTTAGTGTGTAAGGAGAATAGATGAGTAACCCATTTACGCTTTTTGATTTGCCTGTTCAATTCCAACTTGATAACGCCCAGCTTTCTGAGCGTTATCTTGCTTTACAAAAACAGCTTCATCCGGATAATTTTGCTAGCCGTTCAAGTGCGGAACAACTTGAAGCGGTGCAAAAATCCGCAGATGTGAACGATGCACTAAATATCCTTAAAGATCCCATTTTACGAGCGGAAGCGATTATTGAAATCTACACAGGCGAAGCGAAAAATCTCGAAGAAAAAAGTATGCGAGATGTGGATTTCTTAATGCAACAGCTTGAATGGCACGAAAAGCTCGAAACCATTGAATATCGTAAAGATGAAACTGAGTTAACCGCTTTTTTAAAACAGATTAAAACAGAACAAAAAGCGGTATTACAACAGCTTGAAACAGAATTAAATGCAGAACAATGGCAAAAAGCGAATGCCCTAACTGATAAATTACGCTATTTCAAAAAGTTGATTATTCAAATTGAGAAAGTAGAAGAAAAATTGTTTGAAATGTAAATACAAGCGGTCTAATTTTATTAGGATTTTGCAAATGAAAAGTTTAGAAGAATTATTAGATAAACAATCCGCTTGGTTAATTTTAAGAGACTGGTTTACCCAAGCAAAAAACCATTACCAGATTTTGGCAAGCTATCCTGAAGATGCTGGCACGGCTTTAGTCGGAATGCAGCTTTCTACTCGCTCTCCACTTGGAGCAATGCTTTATGAAACAGGTGGAGTATTAATTGATCACGGTTGGTTACGCATTTTAGGCTCGGGTAATGAGAAATTACCTCGTGGCTTATTCGATTGGAACTTTGGTAAAACATTTAAACAATCGGGCGAGCAGCCAAGCCATTTATTAATCGCTGATGATGCGATTGGTGGTTATTTTGCCATTAATGCAGGTGGAATTGGCTCAGATATCGGCAAAGTGTATTACCATCACCCGAAAACGTATAAATGGGAAAATTTAAATTTCGGCTATTCTGAGTTTTTAGGCTGGGCGTTAGCGGGCGATTTAAACGATTTTTACAACGCATTACGCTGGGAAAATTGGCAAGCTGATGTGGAAAAATTACAAGGTCATCAAATTTTAGACTTAAACAGTAAAATTGCTGTGCCGATTGAACGTCATTACCAAGGTGTATTCGCACCTGAAAATATGGGATATTCGGTGGCTTAAATATTTACTCACTTCCCACAAGGGGACAGAGCAATAGAATTTAAAGAGATAAAAATATAATGGCATTATTACAAATTTCTGAACCAGGTCAAACAGCTGCACCACATCAACATAGATTAGCTGTGGGAATTGATTTAGGCACGACAAATTCTTTAGTAGCGACTGTTCGTAGTGGGCAGGCTCAGGTGTTGCTTGATGAAAAAGAGAGAGCATTAGTGCCGTCTGTGGTGCATTATGCTGAAATGGAGAAAACTATTGGGGTGGAAGCCTTTGAAAAGGCAGCATTAGATCCGCAAAACACCGTGATTTCAGCAAAGCGTTTGATTGGGCGTTCGTTGGTGGATGTGCAAAATCGTTACCAAAATTTACCTTATCAATTCACTGAAACGGAAAATGGTTTACCACTTATTCAAACAGCACAAGGTAAGAAAAGCCCAATCGAGGTGTCGGCGGATATTTTAAGCCACTTAGCACAATTCGCAGAAAAACGTTTAGGTGGAGAATTATCGGGCGTGGTAATTACCGTGCCGGCTTATTTTGATGACGCTCAACGCCAAAGTACCAAAGACGCGGCACGTCTTGCAGGTTTAAATGTATTACGTTTATTAAACGAACCAACTGCAGCAGCGATTGCTTACGGTTTAGATAGCGGACAAGAAGGCGTGATTGCTGTTTACGACTTAGGTGGTGGTACTTTCGATCTGTCTATTTTGCGTTTACGTAAAGGAGTGTTTGAAGTATTGGCAACCGCTGGTGATACTGCTCTTGGTGGCGATGATTTCGACCATTTATTAGCGGATTGGATTGCCGAGCAAGCGAATTACAAACCACAGACTGCGAGCGAGCAGCGTGAGTTACTCACCCTTGCCACTCAGACCAAAGTTGCATTATCACAAGCGGACGAAATTGAAGTAAATTTTGCAAATTGGACAAGCAGCGTAAGCCGTTCGCAATTTAATGAGTTAATTCAACCGCTTGTAAGACGCTCTTTAATGACTTGCCGTCGAGCGTTAAAAGATGCCGGTGTGGAAGCCGAAGAAGTGCGTGAAGTCGTGATGGTAGGTGGTTCAACTCGCGTGCCGTTTGTGCGTGAGCAAGTAGGTGAGTTTTTCGGCAAAACGCCTCTGACTTCAATCGACCCAGATAAAGTGGTTGCCATTGGTGCGGCGGTGCAGGCGGATATCTTAGTCGGCAATAAACCTGATGCAGATATGCTGTTGCTAGACGTTGTGCCGCTTTCGCTCGGTATTGAAACAATGGGCGGATTGGTGGAAAAAATTATTCCACGCAATACCACTATTCCTGTTGCCCGAGCTCAAGAGTTTACCACTGGCAAAGATGGACAAACCGCAATGACAATCCACGTGCTACAAGGCGAACGTGAGCTCGTGGAAGATTGCCGGTCGCTCGGCAAAATCAGCTTACGTGGTATTCCGGCAATGGCGGCAGGTGTGGCACAGGTGCGAGTGACTTATCAAGTTGATGCTGACGGTTTACTAAATGTTACGGCGATGGAAAAATCTACCAAAGTGCAAGCTTCCATTCAAATTAAGCCATCTTACGGCTTAACCGATGAAGAGGTCACGCAGATGATTAAATCCTCAATGACGAATGCGAAAGAGGATATGGAAGCTCGCCAGCTTGTTGAGCAACGTGTTGAGGCTGATCGTGTGATTGACAGCGTAGTCACAGCGTTGAAAGAAGACGGGGCGGAAGTCTTAAGCGTGGAAGAATTTAAGGCGATTGAAGCAGAATTAGCCCGATTAATTGAGCTAAAAGCCGGTTCTGACCGTTTAGCTATTCAACAAGGTATTAAAGATTTAGATTTAGCCACGCAAGAATTTGCCGCTCGTCGTATGAATCTATCTATTCAAAAAGCGTTGGCAGGGAAAAAAATGGACGACCTAGCATAA

Protein sequences of DBSCAN-SWA_2

>NZ_CP006953|793542:803395|800293_800815_+|WP_025342460.1|DBSCAN-SWA
MSNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFASRSSAEQLEAVQKSADVNDALNILKDPILRAEAIIEIYTGEAKNLEEKSMRDVDFLMQQLEWHEKLETIEYRKDETELTAFLKQIKTEQKAVLQQLETELNAEQWQKANALTDKLRYFKKLIIQIEKVEEKLFEM
>NZ_CP006953|793542:803395|797708_798161_+|WP_025217577.1|DBSCAN-SWA
MKLTSKGRYAVTAIIDIALHGKSEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRGPGGGYQLGKDPEEISVGMIISAVNENIDVTKCKGSGNCRKDSQCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKAHCHERPHHH
>NZ_CP006953|793542:803395|801541_803395_+|WP_025342462.1|DBSCAN-SWA
MALLQISEPGQTAAPHQHRLAVGIDLGTTNSLVATVRSGQAQVLLDEKERALVPSVVHYAEMEKTIGVEAFEKAALDPQNTVISAKRLIGRSLVDVQNRYQNLPYQFTETENGLPLIQTAQGKKSPIEVSADILSHLAQFAEKRLGGELSGVVITVPAYFDDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDLSILRLRKGVFEVLATAGDTALGGDDFDHLLADWIAEQANYKPQTASEQRELLTLATQTKVALSQADEIEVNFANWTSSVSRSQFNELIQPLVRRSLMTCRRALKDAGVEAEEVREVVMVGGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDADMLLLDVVPLSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSLGKISLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEVTQMIKSSMTNAKEDMEARQLVEQRVEADRVIDSVVTALKEDGAEVLSVEEFKAIEAELARLIELKAGSDRLAIQQGIKDLDLATQEFAARRMNLSIQKALAGKKMDDLA
>NZ_CP006953|793542:803395|793542_795384_+|WP_025342457.1|DBSCAN-SWA
MQVKKFSQKYVNWVLRLGRLRASLLGFFVVAISAILIQSGLTYLFIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLERSRLRLEKAVKDLEELREQDAYLHAKLEKNNRDKTILMATISHELRTPLNGIIGLSQILLDEQQSEKQQEYLKTINMSATALAHIFGDIIDLEKIDSSRIELFRKEVEFEQLIQDIANFGNFMAGNKNIDFKLKYPPNLPKYIYTDYARLSQILWNLISNAVKFTSTSGQILLEICQLEKEQFSFSVADSGIGIPEKEQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLTVKSQENQGSTFTLTIHAESTETKPELDIQKHGLKVLLVEDIEMNVVVAQAMLEKVGCEVDVAMTGEEAFKCFEQNSYDLILLDIQLPDTTGFDIAQTLRNRYENEEIDYLPLLIALTANVIQNQKDYQAQGMDDVLRKPLSLEALVNCLNHYFDNDFLQKNEEKQPLVDNNSENLSYNITMLNELVEVMGKANVLANMDLFAELMPAYLENLQRYLTDWQITNSAESRKLTADEVHKIKGALASVGLHQLQQIAQLAQSDNGEQWEQNIAQWVSVIYSEWQTDLQLAKEYVETH
>NZ_CP006953|793542:803395|796014_797355_-|WP_025342459.1|DBSCAN-SWA
MKIFSKTLLASLVTLCSANAAQAAAFQLAEVSTSGLGRAYAGDAAVADNASVVATNPALMTLFKQTELSAGGVVVNADVDVDGSLGGVFKASQKNIIPTAVVPNLYIVSPINDRFVIGGGMNVNYGMKSHFDPDFNAGMYGGNTELKAINFNLSGAYNLGYGFSAGAGLNVLYSEAEFIRHLGVGGKLLSQSPMLQVAAPMAAASLKQMQNNIELARVKGDKWSLGWNAGLMYEINERNRLGVAYHSAVNVKFKGHYSNAFPTAFNPLLANPIIAEQAKMSQATSGHEIPGRLTLHLPAYWEISGYHKLTDKLAMQYSYKRTEWEKFKALTAYGESGNVLLHKEENYNDSSRVALGFSYDVNEALTLRTGIAYDETASVRSPSISIPDTDRTWYTVGATYRFTPNLSADLGYAHLRGSKNSFKEGSAVFNVKSRANLYGLNVNYKF
>NZ_CP006953|793542:803395|795396_795951_-|WP_025342458.1|DBSCAN-SWA
MKSQIYYDYYQSPVGRLLLLAQNEGLIYIEFEQEQRTTSIEPFTKASSTSGSILEIFCKTKEILDRYFAGEKIPFQQLDFLAPQGTEFQQSVWSILREIPYGETTTYGEIAKKLGKPSAMRAVGGAVGRNPISILIPCHRVLGKNQALTGFGGGLPNKRFLLTLEGIAYQDQGIEFVNPKIKKW
>NZ_CP006953|793542:803395|799960_800284_+|WP_025217574.1|DBSCAN-SWA
MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEFVDVLNEDDHVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCGESFSV
>NZ_CP006953|793542:803395|800849_801482_+|WP_025342461.1|DBSCAN-SWA
MKSLEELLDKQSAWLILRDWFTQAKNHYQILASYPEDAGTALVGMQLSTRSPLGAMLYETGGVLIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSHLLIADDAIGGYFAINAGGIGSDIGKVYYHHPKTYKWENLNFGYSEFLGWALAGDLNDFYNALRWENWQADVEKLQGHQILDLNSKIAVPIERHYQGVFAPENMGYSVA
>NZ_CP006953|793542:803395|798217_799438_+|WP_025217576.1|DBSCAN-SWA
MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFGWEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKTEHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLEAAIRPDTILISVMHVNNEMGVIQPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYVCRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMASEMARLTVLRDRLYNGFKDIEEVYVNGSMEEGKRVGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSASLEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKRAIVKLRELSPLWEMFKEGIDLSKIEWNHH
>NZ_CP006953|793542:803395|799468_799852_+|WP_025217575.1|DBSCAN-SWA
MAYSEKVIDHYENPRNVGTFDKEAADIGTGMVGAPACGDILRLQIKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLDEAGAIKNSDIAEELELPPVKVHCSILAEDAIKAAIADYKEKQAK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025342457.1|793542_795384_+	response regulator	A0A1V0SGX0	Hokovirus	1.2e-41	29.8
WP_025342458.1|795396_795951_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.9e-28	44.0
WP_025342459.1|796014_797355_-	porin	NA	NA	NA	NA
WP_025217577.1|797708_798161_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_025217576.1|798217_799438_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.0e-28	29.4
WP_025217575.1|799468_799852_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.3e-51	75.0
WP_025217574.1|799960_800284_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.7e-23	46.7
WP_025342460.1|800293_800815_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_025342461.1|800849_801482_+	DUF2625 family protein	NA	NA	NA	NA
WP_025342462.1|801541_803395_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.9e-109	43.2

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NZ_CP006953|1869967:1879647|DBSCAN-SWA
TTTAACCGCTTGTTATACGATTCTGCTCTAAAAAAAAGTACTCTTTTTTCTCATCGTCAGTTAAACCTACCGTTCTGTCTTTGGCAATTAGCTCTTCTTTTCGTAATTCCACTAATTTTGCGTAGAGAAAATCGAGAGTTTCGATAAAGGTCGTCTCAACATTTTCCGGTAACACTAAATGTTCCCAACTTGCGAGTGTTTCAACTATTTTATATTGGGGATGCTCTCGATAATGTTCAAGTAGCCCCCCCATACTAATGCCAGCATTTTGCTGACAAATCGCCACAACATCCGTTAATAATTCAAAACCCGGCTCTTTTAATACTTTTAGAGAACTCACATCTGGCACAAATTTCACTAAATGCGGGTTTTGCAATAATAAGGCGATCAGTAATCGCATTGGCGTTCTCTTGATTTTAATAGCTTGATGAGCCGCTCTCTCTTCTGCTTTTTTATTCGGTAATAATGCTTCTATCTGTGTTGGATCAAGAATGCCTAACTTCTGTCCTAAAATATTGCGTAAATAAACACGTAACATTTCGCCCGGAATACGGTTAATCAGCGGTACGGCTAAAGCTGCGAGCTTTGATTTTCCTTCTTTTGAGGAGAGATCTACATCAGCAAGTAAACTATCAAACAAGAAGTTGCTTAGGGGTTTGGCATTCTCCGCTAAATATTGCTCAAAGCCGGCTTTACCTTGCGAGCGAATGAAGGTATCCGGATCTTCGCCATCAGGCAAGAAAATAAATTTGAGCTGACGCCCATCTTGCAAGTAAGGTAAGGCATTTTCTAACGCACGCCACGCAGCATCTCGTCCTGCTCTGTCGCCATCATAACAACAGATAATTTGCTCAGTACAGCGGAACATTTGCTGAATTTGCTCACCTGTGGTTGCCGTGCCTAGTGAGGCTACTACATTAGCCACCCCAAATTGAGCTAGAGCCACCACATCCATATAACCTTCAACTACAAAGAGATAATCTGGATTTTCATTCACTTTGAGAGCTTGATATAAACCGTACAGCTCGCTGCCTTTGTGGTAAATTACAGTTTCAGGCGAGTTCATATACTTCGCCCCTTGCTCATCATTCGGTAACACTCGACCGCCAAAGGCAATTACTCGTCCACGTTTATCTCGAATTGGGAACATCACCCGATTACGAAATTTATCGTAAATTCGACCGCTATCATTTTTGGTTAAAATGCCCGTATCCAGCAATTTTTGTGTTTCTTCAGGGGATTGCCCGAAAGTACGCAAAGCGGCATCAAACGCATTCGGGGCAAAACCAATTTCAAAACGTTCGATAATCTCCGCCGATAAACCACGCTGTTGCAAATAACTTTGTGGCTCAATTTGATGAGTAAGATTTTGCTGATAAAACTTCGCCACCGCCTCCATTAATTCATAGAGATTACGCTTGGTTTTGAAATTTGCTTGCGGCTTACCATCACGGTTAATCACATTCTCTCTTGGTACTTCCAACCCGTGCATAGCCGCAAGCTCTTCAATTGCTTCTGGAAATTCCAATTTGTCGTAATCCATCAGGAAAGTGATGATATTACCATGAGCACCACAGCCAAAGCAGTGGTAAAACTGTTTGGATTGACTGACTGAAAATGAAGGAGTTTTCTCGTGATGAAAAGGACAACAGGCTTGGTAATCTCGCCCTGCTTTTTTGAGCTTAACCCGACTGTTGATAACCTCAACAATATCGGTACGAGCAATAAGATCATCAATAAACGAACGTGGAATTGTGCCTTTCATCGATTTCCTCCTGCTCTTGTGGTTGAGACAAGCAATTAAATTTTACAAATTTTTTGCAAAAAACAACCGCTTGAAATAGAAACGTTAAAAACACCAAAACCGTGAACCAAATAGGAATCACGGTTTCGATATATTTGCGCCAATTAGTGAACTAATTAGTATAAACGTGTGTTGCGTGCATTCTCACGGAAGTTACGTTTAGCGTGGCGTTTAGCAAGTGATGCTTTTTCACGTTTACGAATTGTAGTTGGTTTTTCGTAGAATTCACGAGCACGAACTTCTGCTAAGATACCTGCTTTTTCGCAAGAGCGTTTGAAACGACGTAATGCTACGTCAAATGATTCATTTTCACGAACTTTAATTACTGGCATATGCCATCACCTCAGAAAAATAGATTAAATTATTAACCGCACACAATTTTGGCGGCATAGAACAAAAAAGGTAGTGCATTCTACCTCAACAAAAAAGCAAAGTAAAGAGCAGATTTGCTTCCTAAAACCCAGTTTGTACATACTAAATTGAACGGAGAAATTTTTTAGTTTTACTCAAAAATAGATAGATGGCGTAATACCCTTAGTATAAAATGAGAACAATTTTTTCATTATTTTAGGATCTTTTAATGCACTTTAACTTCAAAAAAATAGACAGTTCACACATTGCCCTTTTCTGCAATGCTCTAGTTGCTACCTTTTTTGTTACTGTTTTAGCCTTTAAAAAAGGCTATAGTTATGTGCCAATGATCTTAGGCGTTATCGCTACACTTAGCTTCTTATTTTATCACTTTAAATTAAAACAAAAGTGGTTGTTTGGCAAAGAAGATAAATTTTTTGTTTTCTCACTTATTGGTTATTTTTTAACTTTTGCAATGTCTGCCATTTTTAATAACGATGGCATTCGTGAAATTGATAATCCGAGTAAAATATTATTATTAATCCCAATAATTTTTTTCTTTCAGATTTATCCAATCAAGAAAGAAACACTTTTTCATTTTATTCCTATGGGAGCATTGGTAGTTGGAATTTTGGCAATATACCAAAAATTTATTCTTAATTTGCCAAAACCATTTCCTGAAATAATGCATATTCAGGCAGGTAATATTTCAATATTATTAGCACTATTTAGCATCGCCATTGCTTTTTACTGGTTTTCACAGAAAAAAATCAAGACTTGTATTCTCTATTTTACCTTCTCTGCTTTTGGGTTATTAGCTAGTATTCTAACTGGAGCAAGAGGTGGCTGGATTGCTTTTCCTATCTGTATTTTACTCATTCTATTTTTTAACTTTAGATATATTCGTAAACAAGTTGTTTATGTAATAGTATTAATGTTAACCATTCCTTTAGCATTATTTATTTATAAACCCGAATTTGGTATTCAGAAAAGATTGAGTGAAGCAGAATCAGATATTACTCGCTATATTGAAAAAAAGGATAAAACAACCTCTTTAGGTGCTCGTTTTGATATGTGGGAAAACGCGGTAATTGCTATTTCTGAAAAACCTATATTAGGACACGGTAGTTCAGGTTATGAAGAATTTAAACAGAAGCAAGTCAAAGCCGAACAAATGGCTAAAACCACATTAAAATTCAATAGTCTACATAATCAATATTTAGAGTCTTTCGTAAAAAGAGGAATTATCGGATTTATTGCATTAATTGCAGTATTATTTATTCCACTCAGTATTTTTGTTAGACGATTAAATACTAATAATGATGCATTAAAATGTATAGCTGTTCTAGGAATAATACATATTATTGCCCACTCCTTCTTTTTCTTGAGTCAATCCTTCTTGGCTCATAATTCAGGTTCAATATCTTATTTCTTTGTATTAATTTTGTTATATCATTTGGTTAAGCAGAAAGAGCATCAAATTTAATATAAAAAATAAAGGCAGAAATTTCATTTCTGCCTTTTTCAAAGTATTCTTACTTACTCAAAAAGCATAGATTGTTCCAAGAGCTTTCCATTTGAATCCTTATCAGATAGGCTTGGAAGATCATTAATATTCCAGTCAATTCCAATAGTAGGATCATTCCATATTAGAGTATGCTCCGCTTTTGGATTATAGTAATTTGTACATTTATAAATCAGTTCAGCCTCATCAGTTAACACATAAAATCCGTGGGCAAATCCTTCAGGTATCCAAAGCTGGCGTTTATTTTCAGCAGACAAAATTTCACCTACCCACTTTCCAAATGTTGAAGAACTTTTTCGTAAATCTACTGCAACATCAAATACAGTACCATTTACTACTCTAACTAATTTACCTTGTGTATTTTCAGTTTGATAATGAAGCCCTCGTAATACACCTTTTACAGACTTAGAATGATTTTCTTGAACAAAAGCACGATTAGCCACATTTTGCTTAAACCACTCATCACGAAAAATTTCCATAAAAAAACCTCGTGTATCGCTGAATATTTGAGGTTCCAATAACTTTACATCAGGGATCTTAGTTTCAATTATTTTCATTAAAAAACCTATTCAAAATAGTGTAAATTTGTTAATGCTTTGTGCCAATTACTAGGTTTAATACCAAAAGTCTGTTGAATCTTATTTAAATCCAAACAAGAATTAGCTGGACGCTTTACCACTGAAGGATAATCAGAAGTTGAAATTGCATTTACAAGCGGTGCTTTTTTTAATATTTTTTGCAAAACTGCTTGCTGAAAAATAGACTCAGCGAAATCATACCAACTAACATAAGGCTGACCACTAAAATGATATATTCCATAGCTATCATTTTTACCATCTATAATCTGATTAGCGATATCAATTAAGGCAGCAGAAATATCATCAGCATAAGTTGGTGCTCCAAATTGGTCAGAAACAACATTAAACTCTTTTCCCTCTTCAGCCAAGCGAAGCATTGTTTTCACAAAATTATTACCACATTCACCAAAAACCCATGCTGTTCGTAAAATGATGCTTCTAGTGTTTGCATTTTGTACCGCTATTTCGCTCTCTAACTTAGTACGCCCATAAACCGTTTGGGGATCAGGAGTCTCATCTTCAGTATAAGGCTTAGAACTCATACCATTAAATACATAATCAGTTGAAATATGTAACATTAGCGCATCAATTTCAGAGGCGGCTTCAGCAAGATATTTTGCACCATTTACATTTACTGCTCTGGCAAGTTCTATTTCACTTTCTGCCTTCTCAACTGCAGTATATGCTGCAGCATTGATAATGACATCAGGACGAAAATCTTTCACTATATTAAACACTGCATTACGATCAGTAATATCTAACTTATCTCGCTCAAGAGCTAAAACATTCGAAACACCTTGTAATTGCTTATTTAGACAAAAACCGACCTGCCCATTAGCTCCTGTAATCAGAAATTTCTTCATTATTTACTGCCTTGCACTAAACGAAGCAGATATTGCCCATAATCATTCTTTTCCATAGAACCTGCTATTTTTTCTACTTGTTCACTTGATAACCAACCATTACGCCATGCAATTTCTTCTAAACACGCAACTTGTAAATTTTGAATATTTTGGATAGTACGAACAAAAGAAGATGCCTCATGTAAACTTGAGTACGTCCCTGTATCTAACCAAGCAAATCCTCGCCCAAGTAGCTGAACATTTAAATCACCTTTTTTTAGGTAAATTTCATTTAATGTCGTAATTTCCAATTCACCTCTTGTTGATGGCTTTACCTGTTTAGCAAACTCAATCACCCTATTATCATAGAAATATAAGCCTGTTACTGCCCAATCCGATTTTGGCTTAATTGGCTTTTCCTCAATAGATATAGCACGAGAATTTTTATCAAATTCTACCACACCAAAACGTTCTGGATCTTTGACTTGATAAGCGAAAACTGTCGCTCCGCCTTGTTCTACATTTTCTCTGGCTCTACGTAATGTTTGAGTAAAACTTTGTCCGTAGAAAATATTATCTCCTAGTACTAAGCAAACAGGTTCTTTTCCAATAAATTTCTCGCCAATTAAAAATGCTTGAGCTAAACCATCTGGTTTTTCTTGAATCGCATACTCAATTTTTATACCAAAACTTGAGCCATCACCTAATAAACGACAAAAATTTTTATTATCTTCAGGTGTAGTAATCACTAAAATTTCACGAATACCGGCTAGCATCAAAACGGAAAGAGGATAATAAATCATCGGTTTATCATAGACAGGTAATAACTGTTTAGACATACCTAGAGTGATCGGATAAAGCCTTGTTCCTGAACCACCAGCAAGAATAATACCTTTCATTCTAACCTCTATTTTTTCCTAAACGCTCCATATTATAAGAGCCGTCTAATACTCTCTTCCACCAATCTTCATTTGAAAGGTACCATTCTACTGTTTTTCTGATACCGCTCTCAAAGGTTTCTTCCGGCACCCAAGCTAATTCTTGTTTAATTTTACTCGCATCAATTGCATAACGTAAATCGTGCCCTGGTCTATCTGCTACATAGGTAATTAGATCTTCATACTTTTTAATACCTGATGGCTTATTCGGTGCAAGTTCTTCCAATAACGCACAAATTACACGTACAACTTCAATATTTGTTTTTTCGTTATGTCCACCAATATTATAGGTTTCGCCTACTTTACCTTCAGTAACTACCTTGTATAATGCTCTAGCGTGATCTTCAACAAATAACCAATCACGAATTTGCATACCGTTGCCATATACAGGTAATTCTTTACCTTTAATAGCATTTAATATCATTAATGGGATCAACTTTTCAGGAAAATGGAAAGGGCCATAGTTATTAGAACAATTCGTAACAATTGTCGGTAAACCATAAGTACGAAACCAAGCACGTACTAAATGATCACTAGATGCTTTTGATGCTGAATAAGGGCTACTTGGAGCATAAGACGTTTTTTCTGTAAAAAAATCTCCCGTATCCTCCAAATCACCATATACTTCATCGGTAGAAATATGATGAAAACGGAATTTAGCTTTCTTCTCAGAAGGTAATTTACCCCAATAATATCGAGCAACCTCTAACAAGGTATAAGTACCGATAATATTAGTCTCAATAAAAGCTGCTGGACCATCAATAGAACGATCTACATGGCTCTCTGCCGCTAGGTGCATAACAACATCAGGTTGATATTTGCAAAAAATCTCAGCAATTTGACCGCTTGCACAAATATCTACTTGCTCAAAATGATAGCGAGGATCATTTTCCACGCTAGCCAAAGACTCTAAATTACCCGCATAAGTCAATTTATCTACGTTAATTACCGTATCCTGAGTATGATTAATAATATAGCGAACAACCGCTGACCCTATAAAGCCGGCTCCACCTGTAACTAAAATATTCATATTCCCAACCTACACTATTGAAACATACTAAAATAACGCCAATACTGCTTAGGGATTTTGTCTGCATTTTTACCTAGATAAAACCCCATCGCTTTACTAAAAATAGCTAGCAATGAATAAGGCAACCACAAAGGTGCATTTTTCAATAGATAATCCCACTCTGCTAATACTAACCTTTTTCCTTCCCCTGTCGCTTTTCCAAAAGTTTGCATTATCCAAGCTTCTTCTAAATGAAAACAGCCCGTATCAAAATAACGCTTAAATTCTTGCATCAATGTATAGTTATGTGAATGATAAACGCAAGCCTCAGCACAATATGCAATTTGATATCCTGCCATTACCATTTTAGCGGCTAAATACATATCCTCAGCAAGAATCACATCATTTGGAAAGCCACCTAATTTATCAAATACACTTTTACGATAAGCAGCAAACGAATTAGACATAAATACCGTTTTAATGCCTAACTGAGGAATACTATTTTTATCCTTAATCATAGACTGATCTGAATAATTAAATTTGCGAGCAAAAGCAGCTAAAGGATTAGCATTTTTATGAGGTAATTGTCGCCCACAAGCAGCAGCAATATTAGGCTTAGCAAAACAGTTCATCAACTCACGCAATGCTGAAGGTTCAGCTAAAATTGCATCTTGAGTCAAATAAACTAAAATATTGCTATTAGGATCACATAACATTGCCGCTTTATTACGAGTAGCCCCGTGATTAAATTCAGCTTTATCAATTTGTATAACTTTAAAGCCAGCCTGTTTTGCTAACAAGGCGGTTTCATCAGTAGATGATGAATCAATGACAATTACTTCCGTAGGCTTTAAATCCTGTATCGTAATTGCAGTAATCCAGTCTTTCCAAAGTGAGCCCGCATTATAAGTAGGTACAATTACACTAAATTTCATTCTGTTGTTTATAACGTTGCAATTTATCTGCTAATTTTCTTTCACTACCTTTAATCATCTCTGTATAAACACTATTATTTATACCCCATAGGGTTGAGTCTGCATCTTCTCGATGAGAAACTAAATAAGGTAAAGTAGTAACTACTCTAAGAGAGCCTTGATTTTCAATATAACGATCTATAGCGTTACTCGAAACATTATGATCCTTTTCGTTCCAGTTAATGAGCTTATCATAGAATGATTGATGATAAATATTCATTACCATACTGGTCATTTTATCTAAATAAACATATTCCTGTTGGTGTCTATATTCTGCATTAATAATCTCAGTTTCTGAATGTAAATCAGCAATTAATCCGGCAAATATTTGCCAGTCATTTCTTTGCTGTAAGAAATCCTTAACCTGTAAATAACGGGTATAAGAATCTCGATGAAATAGAACATCATCTTCACAAATAGTAAGCTGAGGAAGAGAAAACTCTTTTGCTTTTTTCAGCAAAAATTTATAACTCATACCACAGCCGACCCAACCTTTGGTATGCCTTAATCCAGAAAAAAGTTGGATTCCATACTGATTTTGCTGCTTGAACAAGCGAGTTCTTTCTGCTGTTTCTGGCAAACTAATACAAATAAAATCATTCTCTAATTTTATATGATGAGCAGCTAAACGATAAAATTCATCAAACTCTATCCAGTCATTTGCCAACATAAAGCGTAAAAAATAAAATTCAAATGGGTTTGGAGAACGAGTAAGATAATTAATATTATCTTGAATTTTCTGCTTTCTCTCTTGCTCATTCTCAAGCCAAAAATCAATTCGGCTACACATTTGCTCAATATCGCCCACTTCAACAAAATCAACCGTGTTTTCAAGCTGTGGATGTAAATTTAAATCTGAACTACTTTCTGAAACCACTAATTTATTCAATGACAAACATTCATATAAACGAGTTGTTTCCAATAAAGCATTATCATAATAATGAATATTAACAATGATTTTTGCTTTAGCTATTTCTTGATAAAGCTTATCTCCAAAGCAACTCTTTAATACCTTAACCTTATATTTAGAGGACAGTTTTTCAATATAATTTTTCCTACGCTCATTTTTTACATCACCATAGAATAAAACATCATAAACTTCATTTTCATCTGCTTGATGATAAAAATCAGAATGAAAACCTAAAGGTGTAAAAAATAGCTGCTGAAAAGATAATCCCTTTGTTTGTAAATAGGAAATGTTATCTACTGAATAATCTAATACTGCATAAGCGTTATTCAGTTTATGTTGATACTCATCATTAAACCAACGAGAGGTAACAGATTGCTCTAGCTGAAAAGCAACATAATGCTTAGGCAGCTCATTAAACATTTGTGGACAAATTACAAAATGAACTCCATTACCACCCCCATCCCTCGGTGCTTCAAAAACAATTTCACTTCTTAAAGAAAGATTACTTAACTGCCTTTGAATAAGTTTAGCAATGAAATAGCAATGTTTTGTGGTTAAAATAAATATTAGCTTTTGATCTTTTATACTTACCCACTCATACTGCCTATTAAAATTAGGCGTATAGGGGGTTAGTGCTTTTTTCAATGCATACTTAATGCCATATTTTTTAGCCGATGCAATCCCTTTTAATATTAAAGATGGATTTTTTAGCAAACCAGAAGCCAAGTGTATTATTTTCGTACAAATCAT

Protein sequences of DBSCAN-SWA_3

>NZ_CP006953|1869967:1879647|1877937_1879647_-|WP_025343030.1|DBSCAN-SWA
MICTKIIHLASGLLKNPSLILKGIASAKKYGIKYALKKALTPYTPNFNRQYEWVSIKDQKLIFILTTKHCYFIAKLIQRQLSNLSLRSEIVFEAPRDGGGNGVHFVICPQMFNELPKHYVAFQLEQSVTSRWFNDEYQHKLNNAYAVLDYSVDNISYLQTKGLSFQQLFFTPLGFHSDFYHQADENEVYDVLFYGDVKNERRKNYIEKLSSKYKVKVLKSCFGDKLYQEIAKAKIIVNIHYYDNALLETTRLYECLSLNKLVVSESSSDLNLHPQLENTVDFVEVGDIEQMCSRIDFWLENEQERKQKIQDNINYLTRSPNPFEFYFLRFMLANDWIEFDEFYRLAAHHIKLENDFICISLPETAERTRLFKQQNQYGIQLFSGLRHTKGWVGCGMSYKFLLKKAKEFSLPQLTICEDDVLFHRDSYTRYLQVKDFLQQRNDWQIFAGLIADLHSETEIINAEYRHQQEYVYLDKMTSMVMNIYHQSFYDKLINWNEKDHNVSSNAIDRYIENQGSLRVVTTLPYLVSHREDADSTLWGINNSVYTEMIKGSERKLADKLQRYKQQNEI
>NZ_CP006953|1869967:1879647|1872350_1873607_+|WP_025343027.1|DBSCAN-SWA
MHFNFKKIDSSHIALFCNALVATFFVTVLAFKKGYSYVPMILGVIATLSFLFYHFKLKQKWLFGKEDKFFVFSLIGYFLTFAMSAIFNNDGIREIDNPSKILLLIPIIFFFQIYPIKKETLFHFIPMGALVVGILAIYQKFILNLPKPFPEIMHIQAGNISILLALFSIAIAFYWFSQKKIKTCILYFTFSAFGLLASILTGARGGWIAFPICILLILFFNFRYIRKQVVYVIVLMLTIPLALFIYKPEFGIQKRLSEAESDITRYIEKKDKTTSLGARFDMWENAVIAISEKPILGHGSSGYEEFKQKQVKAEQMAKTTLKFNSLHNQYLESFVKRGIIGFIALIAVLFIPLSIFVRRLNTNNDALKCIAVLGIIHIIAHSFFFLSQSFLAHNSGSISYFFVLILLYHLVKQKEHQI
>NZ_CP006953|1869967:1879647|1874211_1875087_-|WP_025343028.1|DBSCAN-SWA
MKKFLITGANGQVGFCLNKQLQGVSNVLALERDKLDITDRNAVFNIVKDFRPDVIINAAAYTAVEKAESEIELARAVNVNGAKYLAEAASEIDALMLHISTDYVFNGMSSKPYTEDETPDPQTVYGRTKLESEIAVQNANTRSIILRTAWVFGECGNNFVKTMLRLAEEGKEFNVVSDQFGAPTYADDISAALIDIANQIIDGKNDSYGIYHFSGQPYVSWYDFAESIFQQAVLQKILKKAPLVNAISTSDYPSVVKRPANSCLDLNKIQQTFGIKPSNWHKALTNLHYFE
>NZ_CP006953|1869967:1879647|1871886_1872102_-|WP_006252283.1|DBSCAN-SWA
MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTIRKREKASLAKRHAKRNFRENARNTRLY
>NZ_CP006953|1869967:1879647|1875966_1877034_-|WP_025216595.1|DBSCAN-SWA
MNILVTGGAGFIGSAVVRYIINHTQDTVINVDKLTYAGNLESLASVENDPRYHFEQVDICASGQIAEIFCKYQPDVVMHLAAESHVDRSIDGPAAFIETNIIGTYTLLEVARYYWGKLPSEKKAKFRFHHISTDEVYGDLEDTGDFFTEKTSYAPSSPYSASKASSDHLVRAWFRTYGLPTIVTNCSNNYGPFHFPEKLIPLMILNAIKGKELPVYGNGMQIRDWLFVEDHARALYKVVTEGKVGETYNIGGHNEKTNIEVVRVICALLEELAPNKPSGIKKYEDLITYVADRPGHDLRYAIDASKIKQELAWVPEETFESGIRKTVEWYLSNEDWWKRVLDGSYNMERLGKNRG
>NZ_CP006953|1869967:1879647|1875086_1875965_-|WP_025216596.1|DBSCAN-SWA
MKGIILAGGSGTRLYPITLGMSKQLLPVYDKPMIYYPLSVLMLAGIREILVITTPEDNKNFCRLLGDGSSFGIKIEYAIQEKPDGLAQAFLIGEKFIGKEPVCLVLGDNIFYGQSFTQTLRRARENVEQGGATVFAYQVKDPERFGVVEFDKNSRAISIEEKPIKPKSDWAVTGLYFYDNRVIEFAKQVKPSTRGELEITTLNEIYLKKGDLNVQLLGRGFAWLDTGTYSSLHEASSFVRTIQNIQNLQVACLEEIAWRNGWLSSEQVEKIAGSMEKNDYGQYLLRLVQGSK
>NZ_CP006953|1869967:1879647|1869967_1871731_-|WP_025343026.1|DBSCAN-SWA
MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHHEKTPSFSVSQSKQFYHCFGCGAHGNIITFLMDYDKLEFPEAIEELAAMHGLEVPRENVINRDGKPQANFKTKRNLYELMEAVAKFYQQNLTHQIEPQSYLQQRGLSAEIIERFEIGFAPNAFDAALRTFGQSPEETQKLLDTGILTKNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNENPDYLFVVEGYMDVVALAQFGVANVVASLGTATTGEQIQQMFRCTEQIICCYDGDRAGRDAAWRALENALPYLQDGRQLKFIFLPDGEDPDTFIRSQGKAGFEQYLAENAKPLSNFLFDSLLADVDLSSKEGKSKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPNKKAEERAAHQAIKIKRTPMRLLIALLLQNPHLVKFVPDVSSLKVLKEPGFELLTDVVAICQQNAGISMGGLLEHYREHPQYKIVETLASWEHLVLPENVETTFIETLDFLYAKLVELRKEELIAKDRTVGLTDDEKKEYFFLEQNRITSG
>NZ_CP006953|1869967:1879647|1873660_1874203_-|WP_025216598.1|DBSCAN-SWA
MKIIETKIPDVKLLEPQIFSDTRGFFMEIFRDEWFKQNVANRAFVQENHSKSVKGVLRGLHYQTENTQGKLVRVVNGTVFDVAVDLRKSSSTFGKWVGEILSAENKRQLWIPEGFAHGFYVLTDEAELIYKCTNYYNPKAEHTLIWNDPTIGIDWNINDLPSLSDKDSNGKLLEQSMLFE
>NZ_CP006953|1869967:1879647|1877048_1877948_-|WP_025343029.1|DBSCAN-SWA
MKFSVIVPTYNAGSLWKDWITAITIQDLKPTEVIVIDSSSTDETALLAKQAGFKVIQIDKAEFNHGATRNKAAMLCDPNSNILVYLTQDAILAEPSALRELMNCFAKPNIAAACGRQLPHKNANPLAAFARKFNYSDQSMIKDKNSIPQLGIKTVFMSNSFAAYRKSVFDKLGGFPNDVILAEDMYLAAKMVMAGYQIAYCAEACVYHSHNYTLMQEFKRYFDTGCFHLEEAWIMQTFGKATGEGKRLVLAEWDYLLKNAPLWLPYSLLAIFSKAMGFYLGKNADKIPKQYWRYFSMFQ

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025343026.1|1869967_1871731_-	DNA primase	A0A1B0WMR3	Flavobacterium_phage	1.2e-38	30.6
WP_006252283.1|1871886_1872102_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_025343027.1|1872350_1873607_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_025216598.1|1873660_1874203_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	53.1
WP_025343028.1|1874211_1875087_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.3e-41	40.8
WP_025216596.1|1875086_1875965_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.1e-109	66.0
WP_025216595.1|1875966_1877034_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-100	52.2
WP_025343029.1|1877048_1877948_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_025343030.1|1877937_1879647_-	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	1.5e-14	31.0