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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP006954 Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome 4 crisprs csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas3,cas9,cas14j 2 18 3 0

Results visualization

1. NZ_CP006954
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006954_1 809211-809378 TypeI NA
2 spacers
cas2,cas1,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006954_2 817914-819546 TypeI NA
24 spacers
cas3,cas5,cas8c,cas7,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006954_3 1425185-1425415 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006954_4 1530974-1531801 TypeII NA
12 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP006954_2 2.20|819213|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819213-819246 34 NZ_CP006954.1 1225384-1225417 0 1.0
NZ_CP006954_4 4.11|1531670|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531670-1531699 30 NZ_CP006954.1 977004-977033 0 1.0

1. spacer 2.20|819213|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to position: 1225384-1225417, mismatch: 0, identity: 1.0

tgcttgaaattctgcttggcttattactcggcag	CRISPR spacer
tgcttgaaattctgcttggcttattactcggcag	Protospacer
**********************************

2. spacer 4.11|1531670|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to position: 977004-977033, mismatch: 0, identity: 1.0

aagattttgatacatgtcttgcaactgccc	CRISPR spacer
aagattttgatacatgtcttgcaactgccc	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP006954_2 2.8|818412|36|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 818412-818447 36 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 42889-42924 1 0.972
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 NC_008201 Mannheimia phage phiMHaA1, complete genome 25331-25364 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 25406-25439 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 25371-25404 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 25525-25558 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 25732-25765 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 NC_047750 Mannheimia phage vB_MhM_1127AP1, complete genome 26560-26593 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 NC_028898 Mannheimia phage vB_MhM_587AP1, complete genome 26568-26601 1 0.971
NZ_CP006954_2 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819279-819312 34 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 25331-25364 1 0.971
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NZ_CP054197 Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence 21959-21991 1 0.97
NZ_CP006954_4 4.6|1531340|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531340-1531369 30 NC_007206 Haemophilus influenzae biotype aegyptius plasmid pF1947, complete sequence 27680-27709 2 0.933
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NC_021724 Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence 5656-5688 3 0.909
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NC_021724 Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence 9067-9099 3 0.909
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 GQ866235 Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence 4686-4718 3 0.909
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 GQ866235 Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence 8535-8567 3 0.909
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NC_002579 Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence 6924-6956 3 0.909
NZ_CP006954_4 4.5|1531274|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531274-1531303 30 NZ_CP054197 Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence 36646-36675 3 0.9
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NZ_KX753679 Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence 24884-24916 5 0.848
NZ_CP006954_3 3.5|1425350|33|NZ_CP006954|CRT 1425350-1425382 33 NZ_KX753679 Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence 26890-26922 6 0.818
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN694671 Marine virus AFVG_250M145, complete genome 25900-25929 6 0.8
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN694753 Marine virus AFVG_250M144, complete genome 28198-28227 6 0.8
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN694231 Marine virus AFVG_250M143, complete genome 18426-18455 6 0.8
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN693981 Marine virus AFVG_250M146, complete genome 16038-16067 6 0.8
NZ_CP006954_4 4.10|1531604|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531604-1531633 30 MN850621 Escherichia phage dhabil, complete genome 144602-144631 6 0.8
NZ_CP006954_4 4.10|1531604|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531604-1531633 30 MN850609 Escherichia phage dhaeg, complete genome 58653-58682 6 0.8
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 NZ_CP025078 Enterococcus faecium strain LS170308 plasmid unnamed, complete sequence 12559-12588 7 0.767
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 43728-43757 7 0.767
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MG969411 UNVERIFIED: Salmonella phage GE_vB_MG, complete genome 53917-53946 7 0.767
NZ_CP006954_4 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531736-1531765 30 NZ_KX853854 Enterococcus faecium strain A120 plasmid pEMA120, complete sequence 26737-26766 7 0.767
NZ_CP006954_4 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531736-1531765 30 NC_016967 Enterococcus faecium plasmid pZB18, complete sequence 42283-42312 7 0.767
NZ_CP006954_4 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531736-1531765 30 NZ_KX976485 Enterococcus avium strain 19081 plasmid pEA19081, complete sequence 49676-49705 7 0.767
NZ_CP006954_4 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531736-1531765 30 MG592433 Vibrio phage 1.052.A._10N.286.46.C3, partial genome 40892-40921 7 0.767
NZ_CP006954_2 2.9|818480|37|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 818480-818516 37 NZ_CP045223 Achromobacter xylosoxidans strain DN002 plasmid unnamed 120350-120386 8 0.784
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 MN694439 Marine virus AFVG_250M296, complete genome 4136-4169 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 MN694282 Marine virus AFVG_250M297, complete genome 4153-4186 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 GQ443085 Clostridium phage CP26F, complete genome 37097-37130 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 JF767210 Clostridium phage phi9O, complete genome 37503-37536 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_011318 Clostridium phage 39-O, complete genome 36601-36634 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_019496 Clostridium phage phiCP26F, complete genome 37097-37130 8 0.765
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_015917 Borreliella bissettii DN127 plasmid lp28-4, complete sequence 12351-12384 8 0.765
NZ_CP006954_4 4.1|1531010|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531010-1531039 30 NZ_CP010111 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence 63955-63984 8 0.733
NZ_CP006954_4 4.3|1531142|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531142-1531171 30 NZ_CP022536 Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence 16419-16448 8 0.733
NZ_CP006954_4 4.4|1531208|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531208-1531237 30 MT234670 Pseudanabaena phage PA-SR01, complete genome 106347-106376 8 0.733
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 415673-415702 8 0.733
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MK448712 Streptococcus phage Javan237, complete genome 26250-26279 8 0.733
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MK448880 Streptococcus phage Javan238, complete genome 26250-26279 8 0.733
NZ_CP006954_4 4.9|1531538|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531538-1531567 30 NZ_CP017591 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence 75366-75395 8 0.733
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_011251 Borrelia duttonii Ly plasmid pl41, complete sequence 348-381 9 0.735
NZ_CP006954_3 3.2|1425285|32|NZ_CP006954|PILER-CR 1425285-1425316 32 MG592459 Vibrio phage 1.084.O._10N.261.49.F5, partial genome 88697-88728 9 0.719
NZ_CP006954_4 4.4|1531208|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531208-1531237 30 NZ_CP032532 Bacillus megaterium NCT-2 plasmid pNCT2_4, complete sequence 96830-96859 9 0.7
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN693046 Marine virus AFVG_25M413, complete genome 14633-14662 9 0.7
NZ_CP006954_4 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531472-1531501 30 MN693008 Marine virus AFVG_117M9, complete genome 14614-14643 9 0.7
NZ_CP006954_4 4.11|1531670|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT 1531670-1531699 30 MK250029 Prevotella phage Lak-C1, complete genome 260871-260900 9 0.7
NZ_CP006954_2 2.6|818278|35|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 818278-818312 35 NZ_CP017773 Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence 23790-23824 10 0.714
NZ_CP006954_2 2.7|818345|35|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 818345-818379 35 KT588073 Acinetobacter phage Ab105-3phi, partial genome 57805-57839 10 0.714
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NZ_CP024238 Escherichia coli O15:H11 strain 90-9272 plasmid unnamed 166303-166336 10 0.706
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_013507 Escherichia coli ETEC H10407 plasmid pEntH10407, complete sequence 38240-38273 10 0.706
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NZ_CP024249 Escherichia coli O182:H21 strain D181 plasmid unnamed1, complete sequence 6097-6130 10 0.706
NZ_CP006954_2 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR 819414-819447 34 NC_017722 Escherichia coli ETEC H10407 plasmid p666, complete sequence 65168-65201 10 0.706
NZ_CP006954_3 3.2|1425285|32|NZ_CP006954|PILER-CR 1425285-1425316 32 MN036035 Leviviridae sp. isolate H4_Bulk_46_scaffold_683 RNA-dependent RNA polymerase (H4Bulk46683_000001), hypothetical protein (H4Bulk46683_000002), and hypothetical protein (H4Bulk46683_000003) genes, complete cds 2110-2141 11 0.656
NZ_CP006954_3 3.2|1425285|32|NZ_CP006954|PILER-CR 1425285-1425316 32 MN032827 Leviviridae sp. isolate H2_Bulk_35_scaffold_543 RNA-dependent RNA polymerase (H2Bulk35543_000001) gene, partial cds; and hypothetical protein (H2Bulk35543_000002) and hypothetical protein (H2Bulk35543_000003) genes, complete cds 1811-1842 11 0.656

1. spacer 2.8|818412|36|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.972

atgtcgctggataagattaaggagctgggcggctat	CRISPR spacer
atgccgctggataagattaaggagctgggcggctat	Protospacer
***.********************************

2. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

3. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

4. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

5. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

6. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

7. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

8. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

9. spacer 2.21|819279|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

cacggcaaagtggaatttatgcaagggcatatta	CRISPR spacer
cacggtaaagtggaatttatgcaagggcatatta	Protospacer
*****.****************************

10. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NZ_CP054197 (Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.97

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggttttgcataccgttaccccctcaagc	Protospacer
********************************.

11. spacer 4.6|1531340|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NC_007206 (Haemophilus influenzae biotype aegyptius plasmid pF1947, complete sequence) position: , mismatch: 2, identity: 0.933

cgttgtggttcgtggaacatctcaaagagg	CRISPR spacer
cgttgtggttcgtggagcaactcaaagagg	Protospacer
****************.** **********

12. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 3, identity: 0.909

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttaccccctcattt	Protospacer
********** *******************  *

13. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 3, identity: 0.909

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttaccccctcattt	Protospacer
********** *******************  *

14. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 3, identity: 0.909

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttaccccctcattt	Protospacer
********** *******************  *

15. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 3, identity: 0.909

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttaccccctcattt	Protospacer
********** *******************  *

16. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 3, identity: 0.909

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttaccccctcattt	Protospacer
********** *******************  *

17. spacer 4.5|1531274|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054197 (Glaesserella parasuis strain YHP170504 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.9

aagcaaggcaaggttgtggtacagaaaata	CRISPR spacer
aggcaagacaaggttgcggtacagaaaata	Protospacer
*.*****.********.*************

18. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 5, identity: 0.848

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcataccgttacccccctcatt	Protospacer
********** ****************.. * *

19. spacer 3.5|1425350|33|NZ_CP006954|CRT matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 6, identity: 0.818

ttaatggttttgcataccgttaccccctcaagt	CRISPR spacer
ttaatggtttagcatactgttacccccctcatt	Protospacer
********** ******.*********.. * *

20. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 6, identity: 0.8

ttgaatcatcaacaatcgc--ttttgattgtg	CRISPR spacer
ttgaatcattaacaatctcttttttaatgg--	Protospacer
*********.******* *  ****.** *  

21. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 6, identity: 0.8

ttgaatcatcaacaatcgc--ttttgattgtg	CRISPR spacer
ttgaatcattaacaatctcttttttaatgg--	Protospacer
*********.******* *  ****.** *  

22. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 6, identity: 0.8

ttgaatcatcaacaatcgc--ttttgattgtg	CRISPR spacer
ttgaatcattaacaatctcttttttaatgg--	Protospacer
*********.******* *  ****.** *  

23. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 6, identity: 0.8

ttgaatcatcaacaatcgc--ttttgattgtg	CRISPR spacer
ttgaatcattaacaatctcttttttaatgg--	Protospacer
*********.******* *  ****.** *  

24. spacer 4.10|1531604|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN850621 (Escherichia phage dhabil, complete genome) position: , mismatch: 6, identity: 0.8

tttcggtataactctaaatcgtcttgggtt	CRISPR spacer
tgttgtaataaatctaaatcgtcttgggat	Protospacer
* *.*  **** **************** *

25. spacer 4.10|1531604|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN850609 (Escherichia phage dhaeg, complete genome) position: , mismatch: 6, identity: 0.8

tttcggtataactctaaatcgtcttgggtt	CRISPR spacer
tgttgtaataaatctaaatcgtcttgggat	Protospacer
* *.*  **** **************** *

26. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025078 (Enterococcus faecium strain LS170308 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
ttttatcatcaacaatcacttgtgatttgt	Protospacer
**  *************.*** *****   

27. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
ttgaatcttcaacaagcgcttttcgctctt	Protospacer
******* ******* ******* ..* * 

28. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 7, identity: 0.767

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
tgagcttatcaacaatcgtgtttgattgtg	Protospacer
* .. *.***********. **********

29. spacer 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX853854 (Enterococcus faecium strain A120 plasmid pEMA120, complete sequence) position: , mismatch: 7, identity: 0.767

gaaaagcttgagatggaatttaaaatcggc	CRISPR spacer
accatacttgaaatggaatttaaaattggc	Protospacer
.  * .*****.**************.***

30. spacer 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NC_016967 (Enterococcus faecium plasmid pZB18, complete sequence) position: , mismatch: 7, identity: 0.767

gaaaagcttgagatggaatttaaaatcggc	CRISPR spacer
accatacttgaaatggaatttaaaattggc	Protospacer
.  * .*****.**************.***

31. spacer 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX976485 (Enterococcus avium strain 19081 plasmid pEA19081, complete sequence) position: , mismatch: 7, identity: 0.767

gaaaagcttgagatggaatttaaaatcggc	CRISPR spacer
accatacttgaaatggaatttaaaattggc	Protospacer
.  * .*****.**************.***

32. spacer 4.12|1531736|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MG592433 (Vibrio phage 1.052.A._10N.286.46.C3, partial genome) position: , mismatch: 7, identity: 0.767

gaaaagcttgagatggaatttaaaatcggc	CRISPR spacer
caaaagctttagatggaattttaaggaggg	Protospacer
 ******** *********** **.  ** 

33. spacer 2.9|818480|37|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045223 (Achromobacter xylosoxidans strain DN002 plasmid unnamed) position: , mismatch: 8, identity: 0.784

gtttagctgt---gaccgatacaccggcaagtctcggcac	CRISPR spacer
---aggccgtccagaccgatacaccggcaattctcgccac	Protospacer
    .**.**   ***************** ***** ***

34. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to MN694439 (Marine virus AFVG_250M296, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
tcaacatcttttattctttctttagaaattttac	Protospacer
 ****.****************** ** * .*  

35. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to MN694282 (Marine virus AFVG_250M297, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
tcaacatcttttattctttctttagaaattttac	Protospacer
 ****.****************** ** * .*  

36. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to GQ443085 (Clostridium phage CP26F, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
acaacttcttttgttctttctttataccttctct	Protospacer
.**** ******.************* .* **. 

37. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to JF767210 (Clostridium phage phi9O, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
acaacttcttttgttctttctttataccttctct	Protospacer
.**** ******.************* .* **. 

38. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_011318 (Clostridium phage 39-O, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
acaacttcttttgttctttctttataccttctct	Protospacer
.**** ******.************* .* **. 

39. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_019496 (Clostridium phage phiCP26F, complete genome) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
acaacttcttttgttctttctttataccttctct	Protospacer
.**** ******.************* .* **. 

40. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_015917 (Borreliella bissettii DN127 plasmid lp28-4, complete sequence) position: , mismatch: 8, identity: 0.765

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
ccattttatttttttctttctttataatttctaa	Protospacer
 ** . * **** **************** ** *

41. spacer 4.1|1531010|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010111 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence) position: , mismatch: 8, identity: 0.733

agaaacgattgacgtagaattagaacagca	CRISPR spacer
agaaacgattgacgtagcatttatgaaaga	Protospacer
***************** *** . . *. *

42. spacer 4.3|1531142|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022536 (Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tctcccataattcctgtgtaatatttactt	CRISPR spacer
agttgaataatacctgtgtaatatttccta	Protospacer
  *.  ***** ************** ** 

43. spacer 4.4|1531208|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MT234670 (Pseudanabaena phage PA-SR01, complete genome) position: , mismatch: 8, identity: 0.733

tgccctacataaccaatgatttttacttcg	CRISPR spacer
agagctacatgaccattgatttttactgta	Protospacer
 *  ******.**** *********** ..

44. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.733

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
tgatttcaacaccaatcgcttttgattgaa	Protospacer
* .  *** ** **************** .

45. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MK448712 (Streptococcus phage Javan237, complete genome) position: , mismatch: 8, identity: 0.733

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
tgatggcatccacagtcgcttttgattgtt	Protospacer
* . . **** ***.************** 

46. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MK448880 (Streptococcus phage Javan238, complete genome) position: , mismatch: 8, identity: 0.733

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
tgatggcatccacagtcgcttttgattgtt	Protospacer
* . . **** ***.************** 

47. spacer 4.9|1531538|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017591 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence) position: , mismatch: 8, identity: 0.733

cttgtgttgttacttttgaacaatgcggat	CRISPR spacer
tctgtgtagttatttttgaacaatgggtcc	Protospacer
..***** ****.************ *  .

48. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 9, identity: 0.735

gcaacgtcttttattctttctttataattgctta	CRISPR spacer
gcaaaatcttttattctttctttattgtataaca	Protospacer
**** .******************* .*    .*

49. spacer 3.2|1425285|32|NZ_CP006954|PILER-CR matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 9, identity: 0.719

gcaaaggttgggtaaatcgtgtagcaggtaat	CRISPR spacer
caaaaggttgagtaaatcgtgtagcttcactt	Protospacer
  ********.**************      *

50. spacer 4.4|1531208|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032532 (Bacillus megaterium NCT-2 plasmid pNCT2_4, complete sequence) position: , mismatch: 9, identity: 0.7

tgccctacataaccaatgatttttacttcg	CRISPR spacer
acggtaaaataatcaatgatttttacttca	Protospacer
    . * ****.****************.

51. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.7

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
atgaatcatccacaatcgctttaatgaaag	Protospacer
 ********* *********** .   . *

52. spacer 4.8|1531472|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.7

ttgaatcatcaacaatcgcttttgattgtg	CRISPR spacer
atgaatcatccacaatcgctttaatgaaag	Protospacer
 ********* *********** .   . *

53. spacer 4.11|1531670|30|NZ_CP006954|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.7

aagattttgatacatgtcttgcaactgccc	CRISPR spacer
aagattttgaaacatgtcttgaagagaata	Protospacer
********** ********** *.  . . 

54. spacer 2.6|818278|35|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017773 (Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence) position: , mismatch: 10, identity: 0.714

tgagcaaggttttaatgcctggaaagctcagaaga	CRISPR spacer
ggttcaaggttttaatgcctggaaggatctagggc	Protospacer
 *  ********************.* ** ...* 

55. spacer 2.7|818345|35|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to KT588073 (Acinetobacter phage Ab105-3phi, partial genome) position: , mismatch: 10, identity: 0.714

ttttaaaaacttaaagtattattaaggcataattt	CRISPR spacer
tttttaaaagttaaagtattattaaatgaaagcaa	Protospacer
**** **** ***************.  * *..  

56. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024238 (Escherichia coli O15:H11 strain 90-9272 plasmid unnamed) position: , mismatch: 10, identity: 0.706

gcaacgtctttt-attctttctttataattgctta	CRISPR spacer
-tattatcctttgattctttcattataattgcggt	Protospacer
 .* ..**.*** ******** **********   

57. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_013507 (Escherichia coli ETEC H10407 plasmid pEntH10407, complete sequence) position: , mismatch: 10, identity: 0.706

gcaacgtctttt-attctttctttataattgctta	CRISPR spacer
-tattatcctttgattctttcattataattgcggt	Protospacer
 .* ..**.*** ******** **********   

58. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024249 (Escherichia coli O182:H21 strain D181 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gcaacgtctttt-attctttctttataattgctta	CRISPR spacer
-tattatcctttgattctttcattataattgcggt	Protospacer
 .* ..**.*** ******** **********   

59. spacer 2.23|819414|34|NZ_CP006954|CRISPRCasFinder,CRT,PILER-CR matches to NC_017722 (Escherichia coli ETEC H10407 plasmid p666, complete sequence) position: , mismatch: 10, identity: 0.706

gcaacgtctttt-attctttctttataattgctta	CRISPR spacer
-tattatcctttgattctttcattataattgcggt	Protospacer
 .* ..**.*** ******** **********   

60. spacer 3.2|1425285|32|NZ_CP006954|PILER-CR matches to MN036035 (Leviviridae sp. isolate H4_Bulk_46_scaffold_683 RNA-dependent RNA polymerase (H4Bulk46683_000001), hypothetical protein (H4Bulk46683_000002), and hypothetical protein (H4Bulk46683_000003) genes, complete cds) position: , mismatch: 11, identity: 0.656

gcaaaggttgggtaaatcgtgtagcaggtaat	CRISPR spacer
ttgaaggttgggtaaatcgactagcaataggc	Protospacer
 ..****************  *****.  ...

61. spacer 3.2|1425285|32|NZ_CP006954|PILER-CR matches to MN032827 (Leviviridae sp. isolate H2_Bulk_35_scaffold_543 RNA-dependent RNA polymerase (H2Bulk35543_000001) gene, partial cds; and hypothetical protein (H2Bulk35543_000002) and hypothetical protein (H2Bulk35543_000003) genes, complete cds) position: , mismatch: 11, identity: 0.656

gcaaaggttgggtaaatcgtgtagcaggtaat	CRISPR spacer
ttgaaggttgggtaaatcgactagcaataggc	Protospacer
 ..****************  *****.  ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 327890 : 333275 7 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_2 1019697 : 1034347 11 Bodo_saltans_virus(11.11%) NA NA
DBSCAN-SWA_3 1162498 : 1169456 6 Synechococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage