CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007127	Gemmatirosa kalamazoonesis strain KBS708 extrachromosomal	0 crisprs	NA	0	0	0	0
NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP007128	Gemmatirosa kalamazoonesis strain KBS708 chromosome, complete genome	2 crisprs	cas3,csa3,DinG,DEDDh,Cas9_archaeal	1	0	0	0
NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	0 crisprs	csa3	0	0	1	0

1. NZ_CP007128

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007128_1

• CRISPR_ID: NZ_CP007128_1
• CRISPR_location: 1463089-1463156
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007128_1

Consensus_repeat	Method
ACGGCGGGACGTCTACGGCGGGACG	CRISPRCasFinder

spacers of NZ_CP007128_1

>1.1|1463114|18|NZ_CP007128|CRISPRCasFinder
ATCGACGGCGGGACGTCT

CRISPR arrays and Neighbor proteins around NZ_CP007128_1

CRISPR arrays

The CRISPR arrays of NZ_CP007128_1

>merge|NZ_CP007128|1|1463089-1463156|CRISPRCasFinder
ACGGCGGGACGTCTACGGCGGGACGATCGACGGCGGGACGTCTACGGCGGGACGTCTACGGCGGGACG

>NZ_CP007128|1|1|1463089-1463156|CRISPRCasFinder
ACGGCGGGACGTCTACGGCGGGACG	ATCGACGGCGGGACGTCT
ACGGCGGGACGTCTACGGCGGGACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007128.1|WP_025410351.1|1464147_1464774_+|HD-domain-containing-protein	unknown	unknown	gnl|CDD|223394
NZ_CP007128.1|WP_025410353.1|1468181_1469591_+|hypothetical-protein	unknown	unknown	gnl|CDD|185760
NZ_CP007128.1|WP_025410348.1|1461464_1462499_-|hypothetical-protein	unknown	unknown	gnl|CDD|274995
NZ_CP007128.1|WP_025410358.1|1474507_1475218_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007128.1|WP_025410354.1|1469766_1472196_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|274576
NZ_CP007128.1|WP_148306185.1|1476137_1476920_+|hypothetical-protein	unknown	unknown	gnl|CDD|173412
NZ_CP007128.1|WP_104022330.1|1475502_1476141_+|RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|274357
NZ_CP007128.1|WP_158508666.1|1447943_1449695_-|ATP-dependent-DNA-ligase	unknown	unknown	gnl|CDD|236428
NZ_CP007128.1|WP_025410341.1|1445997_1447833_+|hypothetical-protein	unknown	unknown	gnl|CDD|349772
NZ_CP007128.1|WP_025410350.1|1463519_1464005_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|224867
NZ_CP007128.1|WP_025410345.1|1453055_1458986_+|Ig-like-domain-repeat-protein	unknown	unknown	gnl|CDD|379864
NZ_CP007128.1|WP_158508667.1|1473125_1474511_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007128.1|WP_104022328.1|1460639_1461290_-|hypothetical-protein	unknown	unknown	gnl|CDD|365838
NZ_CP007128.1|WP_025410344.1|1452741_1453041_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007128.1|WP_025410343.1|1449691_1452538_-|hypothetical-protein	unknown	unknown	gnl|CDD|226156
NZ_CP007128.1|WP_025410352.1|1465068_1468182_+|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl|CDD|274948
NZ_CP007128.1|WP_025410346.1|1459137_1460589_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007128.1|WP_025410340.1|1444922_1445846_+|UV-DNA-damage-repair-endonuclease-UvsE	unknown	unknown	gnl|CDD|235029
NZ_CP007128.1|WP_025410349.1|1462605_1463040_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007128.1|WP_025410355.1|1472392_1472992_+|hypothetical-protein	unknown	unknown	gnl|CDD|153378

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007128.1|WP_025410351.1|1464147_1464774_+|HD-domain-containing-protein	gnl|CDD|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.5433e-08
NZ_CP007128.1|WP_025410348.1|1461464_1462499_-|hypothetical-protein	gnl|CDD|274995	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated. Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.	6.23999e-63
NZ_CP007128.1|WP_025410354.1|1469766_1472196_+|ABC-transporter-permease	gnl|CDD|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	0
NZ_CP007128.1|WP_148306185.1|1476137_1476920_+|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	0.000793486
NZ_CP007128.1|WP_104022330.1|1475502_1476141_+|RNA-polymerase-sigma-factor	gnl|CDD|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.67121e-29
NZ_CP007128.1|WP_158508666.1|1447943_1449695_-|ATP-dependent-DNA-ligase	gnl|CDD|236428	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.	8.21913e-100
NZ_CP007128.1|WP_025410353.1|1468181_1469591_+|hypothetical-protein	gnl|CDD|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	1.10261e-06
NZ_CP007128.1|WP_025410350.1|1463519_1464005_+|GAF-domain-containing-protein	gnl|CDD|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	1.19902e-54
NZ_CP007128.1|WP_025410345.1|1453055_1458986_+|Ig-like-domain-repeat-protein	gnl|CDD|379864	pfam16640, Big_3_5, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold.	1.42488e-05
NZ_CP007128.1|WP_104022328.1|1460639_1461290_-|hypothetical-protein	gnl|CDD|365838	pfam00052, Laminin_B, Laminin B (Domain IV).	7.57044e-14
NZ_CP007128.1|WP_025410343.1|1449691_1452538_-|hypothetical-protein	gnl|CDD|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	2.41785e-24
NZ_CP007128.1|WP_025410352.1|1465068_1468182_+|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl|CDD|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	4.59534e-111
NZ_CP007128.1|WP_025410341.1|1445997_1447833_+|hypothetical-protein	gnl|CDD|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	6.62026e-21
NZ_CP007128.1|WP_025410340.1|1444922_1445846_+|UV-DNA-damage-repair-endonuclease-UvsE	gnl|CDD|235029	PRK02308, uvsE, putative UV damage endonuclease; Provisional.	5.24118e-112
NZ_CP007128.1|WP_025410355.1|1472392_1472992_+|hypothetical-protein	gnl|CDD|153378	cd07366, 3MGA_Dioxygenase, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.	0.00635148

Protein sequences

>NZ_CP007128.1|WP_025410349.1|1462605_1463040_+|hypothetical-protein
MWSDTFLSLERAHFYRIVVWGAACVVVGTALLALAVARRQRVPLVRHFALQTAGWGAVDVALALLALRQLRLPDYAAATRFDRFVWWSLGIDLGGVAVGATLALAGWLLGRRLGAVGAGLGVAVQGLALAAIDLVVIGQIGASV
>NZ_CP007128.1|WP_025410348.1|1461464_1462499_-|hypothetical-protein
MLVTRTPHGLYLPAAGLHLDARTAPGTVFVSHAHSDHCTAAERILCTPETAALHEARRGAREAVRLPYGESLGIGEARVTLTPAGHALGSAMIVSESAEGRAAYTGDFKLRANPFSPPAEIPRVDELVMECTFGEPRYRFPPDEELIARLYAFVDAAFAEGAVPVVLAYALGKGQEALWHLVRAGYDVAVHGAIANLCDLHVALGHPFPGPGSWSRYRRAELQVPNARRVLLTTPNTRKAPMVQKLPAKRTCLLTGWALHPGAWNIYKDLDLVLPLSDHADFDELVRTATESGARKVYTVHGLHKFAEHLRSLGIDAEHLADHPQTDELAPTTEPDEGQLGLAL
>NZ_CP007128.1|WP_104022328.1|1460639_1461290_-|hypothetical-protein
MQKRTLAVAVLGSLLTSVASAQSSSFNNGSDGWRIGELYGTGGGNRAATFLSDGFVQTSDAYGWNAYWAPEEYLGDKSSYYGGSLSLDLRVSDANDVLHPTLLISDGTTRLQYRFDAPETWWDTYVVPLSEDGWEMARFDGSAGAPVSHALFMQVLSHLAFIHVDADWKSSGGHVDLDNVRMGTNALAVVTPEPVPLALLASAALGLGLVATRRRD
>NZ_CP007128.1|WP_025410346.1|1459137_1460589_+|hypothetical-protein
MRPCLVRSAIVPLVLAPFAAGAQLVTPKTVPVRQGEQFEIFPAARAGMAGVRLALDDTLADPFANPARATWVGAPVIFGAPFFHSLSRGGGGRTMPLGAAGARGHWGAAGAVAFQQLDRAGPTWNLPTSERTAINRYAAGALARRAGAWSFGGGAFAASLGAVDGVDQLYAGSDRIEQDGSLLDVRLGATRQWQDGRALDLVLVHNRTDVTHDVHYTTFTWNAATRTQDRAERGEHNVDRTHIWGAHGRFVQPFGVDGWRVGTQLTVNRLSHPKIPNYTVMNIPRDPGTTYAGDVGLGLARLVGRSSFGVDVVYEPMTSATWATAAHDTTGGAGRPIVRTGERTVDNRFRFGNTHLRLGVGRAAAPRDSGSSFGYELGLGLYAIDYVLRQTDHVRGTFRRQHEQWVEWTPTFALQWRRREFDLRYSFRVTCQGAGDCLPLPQGDDVTVAAPSTGGVIVAPSAPLRFDGGRASVHQFAIVVPIR
>NZ_CP007128.1|WP_025410345.1|1453055_1458986_+|Ig-like-domain-repeat-protein
MRFSLSRLLSVLTAVVVYGAPVAGQQVEPPQPAQPASPALPAPSQAPDTSHLPPPPHDGRPKGPPPADSVRLAAGTSTPSSPIETAPAASTGKALVYCPPSDATGCGAIVAALSGTFPVGVERGYDGSAGTVDLASADLSRYALFVIPSLADGGAARPYDLLRSTAIAARLKDGVTGRVAVWSGTPDLGASDRPSKDRLLVGLARWAAATFETRGTTGLVALQDLSDDATTRYGWLAGISAAVVGADAALASHASVTGLTAAGEAVVGSGAPTLAYDNMASYGLTLGAGAPAGEEVAARGADGSKAVLVTYVPAAVAGVSASRAIGAFGAANLLAGVGTTTYSYAQYVTYGRGTYQLYAYAFTGTINTGSNYVTCGSMAFTDAASGAAVATGTALYASSGSPWFYAPSQAPYISSTLYPLGTYTLRAAFQPAAVGCDYQASSTTMSLIVRRGARWQSQQIDGAPTTSTYVTAGATHTVSAVALDELANAPMASSPTLVYVYEEVPNGSCWNGYYYYTCTTWQYVGQTTVNTDATGKLTYSYAIPANTTHTYIFEARTRDDDTYAGEWTYFYLYPRTATTASIGANPANGSAFGQTVAFSTTVTGAGGTPTGTVYLKVDNSYVVAQPLVNGSATLSYAGMSSGVHTVSIYYLGDATYAQTGTAGSTSQSITYTVGKATPIVTWSAPAAITYGTALSGTQLNATASVPGTFTYSPAAGTTLGVGEDQPLTVTFTPTNTTSYETVTKTVTIDVAQATQTITFAGAPASAVYGATFDVTASASSQLPVAVQASGACTASGPTVTMSAGTGTCTLTATQAGNASYAAAAPVTLTTTAARKTTAITLDASAATYDGAAHAATASTPELGAAGIAITYDGAAAAPTAAGSYAVVATLTDANYQAPNATGTLVIGKATATLTLGALSATYDGAAKAAAVTTSPAGLTGVAVTYDGASAAPSGAGSYAVVATLANPNYQATNATGTLEIGKASSTVTVTCSPASVGYDGTPKTPCTASVAGAGGLSQSLTPTYAANTNVGTATATGTFAGEANHLGSTSTATFTITKATPAIAWNAPAAITYGAALGAAQLNATASVPGSFVYSPAAGALPNAGDAQSLSVTFTPTDAANYTTATATVTIDVRKAPSVATVTCPASVTYDGTARTPCSATVTGAGNFSATPAPTYANNTNAGTATASVSYAGDANHEASSGSATFAIEKAASAVVVSCPATAVFTGAALAPCTAAANGVGGLAASLAPTYAANTNVGTATASAAFAGDANHVGSSGSATFGITKAPAAVTVSCPTAPLTYDGSAQTPCTANVAGAGGLSRSLTPAYSGNTNVGAATATAAFDGDANHDAATGSATFSIAKAPAAVTVTCASATQTYDGTPKTPCAATVTGAGGLSAAVTPVTYTANTNAGTASAGAAFAGDANHDPASGSATFTIGKAASSVAVSCPASVVYTGGALAPCTAAVSGPGTVTGAAALTYAANTNAGSASVSASYPGDANHDGSAGTGGFTIAKAPSTVTVTCTPATLTFDGTARTPCAARATGAGGLDVAVSPLTYANNTNVGAAKASAAFAGDANHDGSAGAGGFAITAAATTASLTVSPSSQQYSDQVTLTAKLSPAALGTVAPATGVTFKIAGQTVGTATLAPAAGGLVGTLVVTLGTSLPPGVKAVTADFTGVNANFTVNSASTSFTVAPEDARVTYTGATYASTAGVNSTTAAVTLSATIMDATAAAGDPAYDASAGDVRNASVRFVDRASGATLCSAPVGLVSSADTKTGTVSCNWSASLGSQESATWTVGVVVDGFYARNSADDNTVVTVALPIGGMISGGGFLVNSASGGQYAGQAGLKTNYGFNVKYNKQLTNLQGSLNVIVRNGGRTYQIKANSMTSLATDAVNTPYTAQFAAKASIQDITDPTNVIAVDGNATLQVTLTDRGSPGSNDSLGIAVFNKSGGLWFASNWNGTKTVEQTIGGGDVVVR
>NZ_CP007128.1|WP_025410344.1|1452741_1453041_+|hypothetical-protein
MQHRRLVVSAAFLAVGVLGALAACDSKKDAAAPTAPVSTPALSASPNVATAIGERVASVCRGYQREQARVAAELAKAPKDAELSRQATAIASMIRTTCE
>NZ_CP007128.1|WP_025410343.1|1449691_1452538_-|hypothetical-protein
MLRLRTLGGLSLDRDGVPVHAGMQRRVLALLAVLAAAGEDGISRDRLVTLFWPDAGEEQGRNSLRQALFRLRRDVRVEEPTLGSIDLRLNPTAISSDLAEFRAAVHGHRPEHAVTLYRGPFLDGFALSGAPQFERWVEEERARIRRRVLDTLDVLATEAEARGDCEVAAGWWRRLSVLDPLGARAALGLMRTLASAGDIPAALQHARVHDALMRQELDISPDPAVAALAERLRQREGETTPARRETPPRATTAAPPVPALPPVSVDASLPAPIGSATSARRRLLVPAAVVGAVALALTGSSAARLIAPSLGGPVDQATVVVAPFQVLDPHLGYWREGMVDVLSRNLDGAGPLRTVSPSVAIGRLPDRPERASVTALGRATGAGFAVFGDLIRSGADSVRVRAVVLDVSRSRVVAEVTRRDAITRMDRLTDSLTVAVLRVLSTRVALAAAREGSLGQFRSLDALKAFLLGEQHFRRTRWDSARVHYEAAVAADSTFALPLRRLGQVLAWQRVSTDPASAQYLLRAGALNHGLSPHDSLLVLADSLSAAATSTADALTAWRATRRLFATLDSAVARYPGDPEAWFQLGEAGYHFGFGPEVGQPEQRVLSHFDRAILLDSAFAPAYIHPVELALNLHGPDSAEGYATRYLALNPMEAAHRGVRLVIRLLDPQAAAAEETTRLLDTAATDALVSARTTLRRWPDPAETATRVGRLLAAGRPSDYPLFADVRFMRQRLAEQLAFRGHLAEAVTTLGPRDALIFAELAYLGAVPSTAARARFAAWTRSRPDLARHALAWWSANADTASIDAFERAARGSALAAYDEPAARAHRSLARGDSALALRELTMLPDTLCATCYLDRLTRARLLAAAGRARDALPVLREPLAAFLTPMEVVFAIERARVARLAGATTEAESACSFARAAWASADPAPRRLLDEACGSAAIAARPARAGS
>NZ_CP007128.1|WP_158508666.1|1447943_1449695_-|ATP-dependent-DNA-ligase
MTTEREVPVQPDGFHAWTAAADAVRATTKRLEKRAALAAYLATLDGDALAVAARFLSGLVFPRHDMRTTQVGGRAVFDALVALSGLDADALHARAVDAGELGDLARELFADQPSSGVSLTWVADEFARIAATSGSTAKRALVRELLASLGGAEAQYAVKLLLGSGELRIGLKEAQVEEAVAAAFGQPLELVRHANLLRGDVGEVAVLAREGRLADARLSLFHPLGFMLASPLATAEEITDALPTPFAVEDKYDGIRCQAHIGPGPEGSVRVALYSRTLDDITRGYPEVVAALSALHAPRSTLAASSDGASVERGAWSVEDGGLILDGELLAYDPADPARALPFKALQRRLGRKAPDDAVLAEVPVQFVAYDALAWDGALVIDEPYARRRERLASLDWPGPHARLAPNALVSTADALEAAFAGARAAGNEGIIAKSLASPYTPGRRGKLWVKLKKALATLDVVITGAERGHGRRAKVLSDYTFAVRASETDPTLLNVGKAYGGLTDVEIASLSERLHALTVQKFGRFHLVRPEVVLEVTFDIVQPSTRHKAGYALRFPRIVRIRDDKPVDEIDTLEAVRALAGG
>NZ_CP007128.1|WP_025410341.1|1445997_1447833_+|hypothetical-protein
MSAPTYPTPVRHTGSFRVPREELGSGASRTQLSAMWAAARARNALRRRWPLTSACAAALVLSLVTITLLPRQAARLANLALPRPGEKVDTLALAADAAAARAAFTTADSALQAKRGAAARARAAEIAAIQARRAAEALAAGGVARRDSLSAAVADLDRLVARAQTSPLPTSYRALAEAPGVREDPRTRVLVDSLDDIEREREAFGVVSGVDPVYVQLTNAINRFGRGIMAIADARRTALHDQLAALGDPSAAPTPTQVLPSEALPADSAALAARAPVAIDTAAEIAATQATQLRRDSVEAKLTAARAKNLAVDRRVEAARARANVDAPPSAMLVAAFALALVIGFAVMLGAEVKRPRVADAREAERVSRTRVLAVVRPESSISDRARRAADVEIGGLIDSSIESYRMLYLSLAATGAAIPVVAVTGDDPAIAATVAANVAAVAAEDGRSTLVVDEDMGRGLLSTALGVRNRTGLSDLARSNLPLAEAIVPVTVGRGLTIDVVPAGVAPPPPHVAATTASTPVPVVSSVLDALRLDLGRLTRRYDFAVLGMPPSEAEADARGFRIAPDVVVCARAGHTPLAGLAREVERLQQAGARVRGLVLWDDERPSLDE
>NZ_CP007128.1|WP_025410340.1|1444922_1445846_+|UV-DNA-damage-repair-endonuclease-UvsE
MLRLGLCCLFVDAPIQFRTATHKHVATLGPDGGRAYLSGAARANADALRRAVERCHALGIGAFRITSGILPLATHPISGYTVASLDDGATIGRAFETVRPLARALDVRLSFHPDQFVVLNSERESVRDASARELEFQCEVAEVVGADTVTLHAGGGAGGKPAALDRLTRTIDTLSDRARARLALENDDRIFTVEDLLPICVRTGVPLVYDAHHHRCNPDALTVDEATDRAAATWAVRDAALGPHAHEPWFHISSPRDGWGAPNPRPHADYIDPADVPDAWRDLTLTVDVEAKAKERAVLDLMERLRR
>NZ_CP007128.1|WP_025410350.1|1463519_1464005_+|GAF-domain-containing-protein
MAEQTLDLRHLPKPAAYDELAEQIDAVLAGVDDPIAAMATVSCLVHHAFGHLWTGFYRVVEPDRLLRVGPYQGTLGCLDIAFGRGVCGTAAAERRTVVVEDVNEFPGHITCDARSRSEIVVPVVDRSGTLVAVFDVDSEYPGAFDDDDRAGLERLLGWFAR
>NZ_CP007128.1|WP_025410351.1|1464147_1464774_+|HD-domain-containing-protein
MTTGYSDRINHALAFAAKHHDQEVRKGTRLPYFTAPANAAVILTRYGQDDVTVVAAILHEAVEDYLRDGLSEDAVRHRLEDKFGPDVLTAALGAVRRRLDDDGVELSHEEQKLDHLDRLASASDRSRWVLAAHQVHEGSTLLTDLRRTAFPDAVWHRFAEGRETKVRWYRQVSDRLEAAGFTGAIAAELRSVADALEPFAVDGVRAVR
>NZ_CP007128.1|WP_025410352.1|1465068_1468182_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MRGSILRRPLLRSGFAAVLLVGGAGVAGAQQATISGQVTAAGTAQPLPDSRVYVVGTTLIATTNAEGRYSIRGVPAGQAQVRVIRVGYTEQKKPVAVSAGQSLTVDFSLSPSVVQLSEIVTTATGPQRRVELGNSVASLPNVGEHVAEVPTHNVSDLLVGKVAGVNVLPGSMTGTAGTIRLRGLNSISLSNAPIWIVDGVRFNAGSVGVPTGGQRTTLLSSLAPDDIDNIEIVKGPSAATLYGTDAVNGVIIVTTKKGRAGGAQWNWFGETGAIKDKADYPLSYMIWGHSPTATTVQRRCELTQISAKTCIQDSITTFNPLNVAAYSPIQTGNRKQFGGQVSGGTEKVRYFSSGGWEVEEGPVRLPDSELARLQSANTPIREEWKKPEMLGRTNVRGNINAAVNDKFDLSVQSSYIKTNQRLTQTDNNSWSIFYQAAMNPGFNGAGPSRTNKDALGRDLNGNASYVYGDIFQDVVVEDIQRMLGSVNGNYRPFSWLQADGNIGVDLSDRRDGEVCRFNECPPSGTTRLGYATSQHSNDRNLSAKLAATATWSARDWANLKTTVGADYTNIEGENTNSSSQQLPPGAQTVGAGAVQFGGNGLPSATKTLGYYVQEQISLRDRMFVTLAARSDKNSAFGVNYKNAIYPKAQLAWVISDEPFFPHYSWLNSLRLRSAYGKAGQNPGATAALYTYSSRVVNVVSSSNGQSGTDTPGLRAAAVGNPNLRPESATEVEAGFESQLFNRVSVDFTYYTRRSQDALISRPIASSSGASTLSVLQNLGSIGNQGLELSVNATLASTRNFGWDLGVIGAHNTNKIRTLGTENGVPVPDIGTGTQRNAVGYPINAWFVRDRKWSDANGDNILTVDEISVDTAYHFLGASQPTYTASLTNGFDFLNRKLRVRAMFDYKGGFYVFNDNAQFLCANNAAVAARSNPNAPLRDQADCLAQRVTVPTTSSGYIENGAFIRFRELSATIGVPNRYLRLVHASNANLSLGARNLAVFTKYRGQDPEANYSTGDVQTGFMASAPRSYYTARLNLYF
>NZ_CP007128.1|WP_025410353.1|1468181_1469591_+|hypothetical-protein
MSRDRLTTKTLLALGAAAGLAGCGVQDQLLEPQQPGLITPEAVQAAGATGAQALYVGALGALQSWTGGGGNGNSQNLWIYSDLVTDVWKVTDTFTQRIDMDRRQIANLDAEVTGAYNVAQQSRGRFREALNSLKALIPNEPEKQGEMYFAMGLEELTVSEDFCNGIPFGEVVNGVITYTKPITNAEGFQLAIAHLDSAIALASGTNALSVKVRTAATIAKARAQVDLAQFSAAAQTVANVPTSYQYTLTFSQTTQSNTIWTVNASNPSSARVAVGDSVTLANGVEVRIRNAIPFGSAKDPRVPTTGSYKDNTRTGFDGQTPWVGQLIWSTREAPVVLASGIDARLIEAEAKLNNNDITGMMTTLNALRTSAQTLGAFSVPVMAPLATPASKEAAIDLLFREKAFWQFGRGMRLGDLRRLIRQYGRTEDSTFPEDGFHKTPFKFGDDVNLPVPDAEKTNPNFKGCIDRKA
>NZ_CP007128.1|WP_025410354.1|1469766_1472196_+|ABC-transporter-permease
MLDDLRLAVRALAKAPAFALAAVLCIALGIGANTAIFSVVDAVLLRPLPVRDLDRMVVIREDLPKLDLLDAELDPPSTLELATRGDLFERAAGVAETRVNLTTDAAEPARVGAARTLGDYFQLLDAHPVVGRLYAADQSRDGRHRVVVLSYGFWRDRFGGDRAIVGRTLHLSGTPYEVIGVAGPELRYPRAAEVWMPYPVDSTTQSQHGVLVMKVVAKRRADVSAERLRDALARQGRAWGEALAGNGGGNDFARSLVIRPVPLTAFLAGELRPIVLLLAGAVGLVLLIACANVACLQLVRATGRVRELAVRAALGAGSARLVRPLVAESAAVAAIGGALGAAGGAVAVAALARWGPAQYPMLRDARLDPLVLLFAFALAAASALLFGVAPAVRASRVDPQDALRASARGTSAGAERHRFLQGAVVMQVALALALLLSSGLMIRSLSRLIATDPGFRAERVLTAQVALPPRVYQQAAVAPFVDRLLERLRAVPGVQAVGIAASLPFVGSGTASSSPFEVVGRAPDASGEKPHANFNMVSDDYFRAMGMTLKAGRAFAATDAKGAPPVVVVDEQLARQFFPGESAIGKHLRQLGGVGDGDLTIVGVVGDVTPKELGQERHATIYYTYRQTMTPSFGVAVRGVLPPASFAGALRAIVAEQDRQVPVYDVRPMRERVDESLGARRLAVWVLGAFAALALTLALLGITGVLSYTVSQRAHELGIRLAIGAQRGDIVRLVVRQGATLTLAGLGAGLALFLAGGRLLAAALYGVGPHDPATIVASATLLGTVALVASWLPARRAARADATSVLRQS
>NZ_CP007128.1|WP_025410355.1|1472392_1472992_+|hypothetical-protein
MHALRLPAAALLLVPVAARAQRAAPDSLPFSPGQWGIEAGVGGGGSVGALKFLSRATALAANLAVNYNTRTTDPQLASVPVSEFSNTFVTATLGVRHYSPVARSIGALFTVGAALSRQSSHANPGDIRGHETDVGAFGEVGLSYFVLPRLTLNGTYGLTVQHQDGAQLQNLLNSQVSTVKTHGWLVQTTGVRATVGIFF
>NZ_CP007128.1|WP_158508667.1|1473125_1474511_+|hypothetical-protein
MALLSFALLAVLGAAPAAQAAPSRLAVTVTVTGAGAGTGTIASNPSGIDCRISAGTATGTCSASFAEGTVVTLIPTGSASGSFTGWSGGCSGNANCTLTLPTTPGSVSVVATFAASTNAAVAVAGAGTGSGRVTSVPAGIDCTVTNGVASGACNILFPLGGPVTLTAAAASGSAFGGWAGACSGAATCQIQLTANASVTATFNRATGGTTSTLTVTGAGTGSGTVASVPSGISCTIAAGVASGTCSASFAAGSVVTLVPTGSASGSFTGWSGACVGTANCVVTMPAAGGTATVSATFVLSTNAAIVVAGAGNGGGRVTSAPAGIDCGVTNGAASGACNILFPLGATVTLTATAQPGSGFAGWSGACTGTAPCQIRLAAAANVTATFAVLPNVTAAVNDLFDGRSLTAAERSVLDALGNADGTFNLGDVLSLLDRTGQRLSVRTLERLLALPPSPPSARRTP
>NZ_CP007128.1|WP_025410358.1|1474507_1475218_+|hypothetical-protein
MRTRRISARGALGAALGTLLGGCGGGGGGIAPVTPPPPPVTFALSVTGSDVGSGRVTSADGKIDCRLGAGGGGTCSASFNSGASVSLTATPSGTDQFAGWTSGPCTGTTNPCTVVVSTNVALAAGFRPAVKQVTLSLQTPNADDGAVLLTLTGPSLLAIRPSAGLEIKEVRDTVAGAPRSRMLLRGALASGVVAQLDIAGSATPAQYTAQIQQVAARASGRYAQRTSLAGYALTVQ
>NZ_CP007128.1|WP_104022330.1|1475502_1476141_+|RNA-polymerase-sigma-factor
MSRPSATTAVVSIQPAAALHAAAGASESALVARASGGDGDAFATLVARLLPLVYRWALVLADDVDDADDITQDAFVQMHLRLAQFRGEAPLEAWLYGIVRRAAGQRRRRARRRARLAALPRALPERDVYVTDPGARVDRQQLLMKVRAFFAALPARQREIVDLVDLQGYDPIEVALMTGIKPATVRANLFKARAAVRAHLIARHPGVAEVER
>NZ_CP007128.1|WP_148306185.1|1476137_1476920_+|hypothetical-protein
MMAMTCDQCREIIAVADLTDWGDMDAVAAHCRTCETCAGVVTEVRDSARRVADLLDGIGPGMPAALVARRAAAQAALERQQRRRRRAFLYPTAAAMVAAAGFAVFVSRSGMRHYPELHLPLRCLGPEQATTLVMPIVGREGTVAVKGMGPHMLTISGPREMLQRAEHAVAQYDNEGSLLPGESCLLPAGPPNVGMAATMPPDVETQQAFDEMIREQARLEAEQARRTAEEMRRAAEEQRHAAEEARRAMREDARAAARKP

Crispr_ID: NZ_CP007128_2

• CRISPR_ID: NZ_CP007128_2
• CRISPR_location: 5262581-5262678
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007128_2

Consensus_repeat	Method
GCGCGTCGCGCTGCGCGCCGGCA	CRISPRCasFinder

spacers of NZ_CP007128_2

>2.1|5262604|52|NZ_CP007128|CRISPRCasFinder
CCCGATCGGCCGCACGCTACCTGTCGGTCGCGCCGACCAGCGACAGCACGAG

CRISPR arrays and Neighbor proteins around NZ_CP007128_2

CRISPR arrays

The CRISPR arrays of NZ_CP007128_2

>merge|NZ_CP007128|2|5262581-5262678|CRISPRCasFinder
GCGCGTCGCGCTGCGCGCCGGCACCCGATCGGCCGCACGCTACCTGTCGGTCGCGCCGACCAGCGACAGCACGAGCGCCGTCGCGCTGCGCGCCGGCA

>NZ_CP007128|2|2|5262581-5262678|CRISPRCasFinder
GCGCGTCGCGCTGCGCGCCGGCA	CCCGATCGGCCGCACGCTACCTGTCGGTCGCGCCGACCAGCGACAGCACGAG
CGCCGTCGCGCTGCGCGCCGGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007128.1|WP_025413482.1|5257114_5258857_+|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl|CDD|350129
NZ_CP007128.1|WP_025413486.1|5264944_5266018_+|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl|CDD|223700
NZ_CP007128.1|WP_104022970.1|5274455_5275478_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP007128.1|WP_162178530.1|5266020_5268726_-|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl|CDD|225789
NZ_CP007128.1|WP_025413474.1|5241755_5242844_-|galactose-mutarotase	unknown	unknown	gnl|CDD|185696
NZ_CP007128.1|WP_025413477.1|5248382_5249504_-|endo-1,4-beta-xylanase	unknown	unknown	gnl|CDD|366032
NZ_CP007128.1|WP_025413479.1|5250688_5252200_-|MFS-transporter	unknown	unknown	gnl|CDD|225121
NZ_CP007128.1|WP_104022969.1|5268743_5269211_-|Plug-domain-containing-protein	unknown	unknown	gnl|CDD|369481
NZ_CP007128.1|WP_025413480.1|5252338_5254678_-|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|185053
NZ_CP007128.1|WP_025413485.1|5262859_5264932_+|hypothetical-protein	unknown	unknown	gnl|CDD|226064
NZ_CP007128.1|WP_025413490.1|5277971_5279120_-|DUF1080-domain-containing-protein	unknown	unknown	gnl|CDD|368908
NZ_CP007128.1|WP_025413491.1|5279238_5280864_-|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl|CDD|223745
NZ_CP007128.1|WP_104023206.1|5242840_5245333_-|glycoside-hydrolase-family-9-protein	unknown	unknown	gnl|CDD|199881
NZ_CP007128.1|WP_025413489.1|5275563_5277792_+|hypothetical-protein	unknown	unknown	gnl|CDD|238858
NZ_CP007128.1|WP_025413476.1|5245368_5248353_-|glycosyl-hydrolase-115-family-protein	unknown	unknown	gnl|CDD|379757
NZ_CP007128.1|WP_025413488.1|5270999_5274053_-|TonB-dependent-receptor	unknown	unknown	gnl|CDD|274948
NZ_CP007128.1|WP_025413481.1|5254787_5256782_-|beta-galactosidase-jelly-roll-domain-containing-protein	unknown	unknown	gnl|CDD|377084
NZ_CP007128.1|WP_025413478.1|5249526_5250681_-|endo-1,4-beta-xylanase	unknown	unknown	gnl|CDD|366032
NZ_CP007128.1|WP_025413483.1|5258856_5260791_+|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl|CDD|369609
NZ_CP007128.1|WP_158508877.1|5269329_5270967_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl|CDD|369630

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007128.1|WP_025413482.1|5257114_5258857_+|glycoside-hydrolase-family-43-protein	gnl|CDD|350129	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB). This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been characterized to have alpha-L-arabinofuranosidase (EC 3.2.1.55) and beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activities. Beta-1,4-xylosidases are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Also included in this subfamily are Bacteroides ovatus alpha-L-arabinofuranosidases, BoGH43A and BoGH43B, both having a two-domain architecture, consisting of an N-terminal 5-bladed beta-propeller domain harboring the catalytic active site, and a C-terminal beta-sandwich domain. However, despite significant functional overlap between these two enzymes, BoGH43A and BoGH43B share just 41% sequence identity. The latter appears to be significantly less active on the same substrates, suggesting that these paralogs may play subtly different roles during the degradation of xyloglucans from different sources, or may function most optimally at different stages in the catabolism of xyloglucan oligosaccharides (XyGOs), for example before or after hydrolysis of certain side-chain moieties. It also includes Phanerochaete chrysosporium BKM-F-1767 Xyl, a bifunctional xylosidase/arabinofuranosidase. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	2.6465e-168
NZ_CP007128.1|WP_025413486.1|5264944_5266018_+|prolyl-oligopeptidase-family-serine-peptidase	gnl|CDD|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.45015e-19
NZ_CP007128.1|WP_104022970.1|5274455_5275478_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.18616e-117
NZ_CP007128.1|WP_162178530.1|5266020_5268726_-|glycoside-hydrolase-family-2-protein	gnl|CDD|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	2.2078e-59
NZ_CP007128.1|WP_025413474.1|5241755_5242844_-|galactose-mutarotase	gnl|CDD|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	6.78726e-179
NZ_CP007128.1|WP_025413477.1|5248382_5249504_-|endo-1,4-beta-xylanase	gnl|CDD|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	5.63008e-128
NZ_CP007128.1|WP_025413479.1|5250688_5252200_-|MFS-transporter	gnl|CDD|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	6.11938e-124
NZ_CP007128.1|WP_104022969.1|5268743_5269211_-|Plug-domain-containing-protein	gnl|CDD|369481	pfam07715, Plug, TonB-dependent Receptor Plug Domain. The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.	0.00284377
NZ_CP007128.1|WP_025413480.1|5252338_5254678_-|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl|CDD|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP007128.1|WP_025413485.1|5262859_5264932_+|hypothetical-protein	gnl|CDD|226064	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].	7.2546e-58
NZ_CP007128.1|WP_025413490.1|5277971_5279120_-|DUF1080-domain-containing-protein	gnl|CDD|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	1.19616e-47
NZ_CP007128.1|WP_025413491.1|5279238_5280864_-|Gfo/Idh/MocA-family-oxidoreductase	gnl|CDD|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.09852e-23
NZ_CP007128.1|WP_104023206.1|5242840_5245333_-|glycoside-hydrolase-family-9-protein	gnl|CDD|199881	cd02850, E_set_Cellulase_N, N-terminal Early set domain associated with the catalytic domain of cellulase. E or "early" set domains are associated with the catalytic domain of cellulases at the N-terminal end. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually categorized into either exoglucanases, which sequentially release terminal sugar units from the cellulose chain, or endoglucanases, which also attack the chain internally. The N-terminal domain of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.	5.7389e-18
NZ_CP007128.1|WP_025413489.1|5275563_5277792_+|hypothetical-protein	gnl|CDD|238858	cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.	5.85343e-58
NZ_CP007128.1|WP_025413476.1|5245368_5248353_-|glycosyl-hydrolase-115-family-protein	gnl|CDD|379757	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115. Glyco_hydro_115 is a family of glycoside hydrolases likely to have the activity of xylan a-1,2-glucuronidase, EC:3.2.1.131, or a-(4-O-methyl)-glucuronidase EC:3.2.1.-.	0
NZ_CP007128.1|WP_025413488.1|5270999_5274053_-|TonB-dependent-receptor	gnl|CDD|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP007128.1|WP_025413481.1|5254787_5256782_-|beta-galactosidase-jelly-roll-domain-containing-protein	gnl|CDD|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	8.0168e-09
NZ_CP007128.1|WP_025413478.1|5249526_5250681_-|endo-1,4-beta-xylanase	gnl|CDD|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	1.16337e-116
NZ_CP007128.1|WP_025413483.1|5258856_5260791_+|glycoside-hydrolase-family-127-protein	gnl|CDD|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	0
NZ_CP007128.1|WP_158508877.1|5269329_5270967_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl|CDD|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	9.43808e-32

Protein sequences

>NZ_CP007128.1|WP_025413483.1|5258856_5260791_+|glycoside-hydrolase-family-127-protein
MPAPDSLSRRDAIALLGLGALGARMLPRILTRASWAAPASAGVTPFALTDVRLLDGPFRDAQERDARYLLALDADRMLHNFRVNAGLPPKAPVYGGWESEEPWVGIRCHGHTLGHYLGAVAMMYASTGDRRFAERATYIVSELRACQQARGDGLVCAFPDGAKPLEDAVAGRRFAGVPWYTMHKIFAGLRDAHVHAATPDALPALVALAEWTWNATRDMSDDAMQRMLDTEHGGMTEVLADVSALAHEPKYLALARRFAHHKVLDPLAEGRDVLDGLHSNTQIPKFVGYQRVRELSGDAAYGAAARHFWETVTQRRSYATGGNGDGEHFFPVTEFARRLGSAKTMETCCTHNMLRLTRALFTAAPSSAVTDYYERALYNGILASQDPDSGMMTYFQATRPGYVRLYHTPEESFWCCTGTGMENHAKYGDSIYFRGDDALYVNLFVPSTVAWRARGVTVTQTTRFPETDATRLAVAAVRPARWTLMLRRPAWCAGMTVAVNGRRVRASPDAAGYLAVARTWREGDVVDVRLPMTLRAEPLPNAPDLVAFAYGPIVLAGALGTAGVTPSAQIIKNERESGNMLNAAVEIPALAGTAADVVRATRRVSDAPLAFETAGVGRPRDVRLVPYHRVAHERYNLYWKVQPT
>NZ_CP007128.1|WP_025413482.1|5257114_5258857_+|glycoside-hydrolase-family-43-protein
MRPALRIATLAASLSLAVTAPGHGAGAQPVQKDGAARGAPPHVARFDWFEYAGHDAVYDTNRPRPGEYTNPILMGFHPDPSITRAGDDYYLVNSTFAYFPGIPVFHSRDLVSWTQIGSVIDRPSQLRLDSLGVSRGVFAPAIAFHAGTFYVVNTCVDCGGNFLVTATDPAGPWSDPIWLGFDGIDPSLFFDDDGKAYVVNNGAPVGPPLYSGHRAIWIQELDLATKQLVGERTLIVNGGVDIRTKPSWIEGPHLLKRDGRYYLIAAEGGTGDFHSEVVFGAPSVRGPYTPWSGNPILTQRNLDRNRPDPITSTGHADFVTLPDGDTWAVFLGTRPYADDTYNTGRETFLMRVSWRDGWPVLTSGQEGVPYVAPRPTLPAQPAPTIPTRGNFTVRDDFSGRALAPYWLMLRTPRETWWDLTSAPGSLSLAARPVPLSSRGQPSFLGRRQQHLTATVTTSMRWAPTQDGDRAGLVAFQSENAWYFLAVGRDGGKPVVQVVRRAGRGPSVADSVLASAPLPTGTTSPIELRITARRDRYDFAYATTPNRWTTLLANADATVLSTRSAGGFVGVLFALHAYAAP
>NZ_CP007128.1|WP_025413481.1|5254787_5256782_-|beta-galactosidase-jelly-roll-domain-containing-protein
MPPSAVSASRHVPLRARRALLALAVGAAPVAAQPVRKDAPALRLPKLFTDGMVVQRGVPIRVWGWAAPNAPVAVTFRGTTGRATADARGAWAVQLPPAAAGGPYAITVAAARDTLRVRDVLVGDVWVASGQSNMEWPVSAVTDAPAVIAAAHDSALRQFKVPISWAERPEDDLAGGSWAPADPAHVGAFSGVAYFFAKELREHERVPIGIVNTTWGGSAIETWLSADVQGLAPDAPAKTLAAERARLEKLRDSIQARIGVVPERDPGLVGGKAVWADPALDDASWSTIAVPGYWEGQGFASVDGVAWYRTTFTLSADEARAPVRLLLGAIDDDDVTWVNGVEVGRTAGYNVPRTYTVPTSALHAGANSLVVRVSDYSGGGGIAGGDSPRLEIGGASRSLAGQWKFKVAELAVRMDAQRTNKVAAITYDKMVHPLLPFPIKGVIWYQGESNANDDAQARAYRGQFASLITSWRKAWQGSAPTFPFLWVQLPNYTAPDSVPSASGGGWALQRESMEAALALPNTGRAVIIDVGGANLLHPTNKQDPGHRLALVARRVAYHENVLASGPTYRSHEVRGDSVIVTFDHVGGGLTSKAPDASVGAFALAGADHRWAWANARIEGNRVVVWSDRVHRPVAVRYAWANNPVDANLYNRDGLPAAPFRTDDW
>NZ_CP007128.1|WP_025413480.1|5252338_5254678_-|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MTTNAQITLPYKDATLSPEQRTADLLARMTLEEKAAQMVGVWQLKTETLVDDAGNFDVAKARAAFGHGNGLGQVGRPSDAGGSGAGGGGHEPTKGRNARQQATLTNDIQRFFVEESRLGIPVVFHEECLHGQAAIDGTSFPQPIGLASTFDPALVESLYAMTAAEARSRGTHQALTPVVDVARDPRWGRVEETFGEDPYLVTRLGVAAVRGFQGDATFRDKSRVMATLKHFVAHGQPEGGQNCAPANVSMRELRDVFLPPFKAAVQEAGCVSLMASYNEVDGVPSHANRWLLRDVLRDEWGFEGFIVSDYYAIWELHDRPDTHGHHVAADKKEACALAVRAGVNVELPEPDCYRHLVELVREGTLAESQLDDLVVPLLEWKFRAGLFDDPYVDPDVAERTVASDANRELALQAARETMVLLKNDGDVLPLDLATLGTIAVIGPNANRSLLGGYSGIPRHDVTVLDGIRAHVGDRARVVHAEGCRITIGGSWVQDEVVPSDPEEDRRLIAEAVDVARGADVIVLAIGGNEQTSREAWSRKHMGDRTSLDLVGRQNELVDAMLATGKPVVALLFNGRPLAITRVADRVPAIVECWYLGQECGRAVADVLFGEHTPAGKLPISFPRSAGHLPVFYNHKPSARRGYLWDDVTPLYPFGYGLSYTTFRVSNVRLDDGTIGVDGATRVRCDVTNTGARAGSEVVQLYVRDVASSVTRPVKELKGFRKVRLAPGETTTVELQIGRDALAFHDVDYRYVVEPGEFRIMVGTSSRDEDLQTVTLTVGK
>NZ_CP007128.1|WP_025413479.1|5250688_5252200_-|MFS-transporter
MAQHSERLSFIEKAGYSLGDAAANFVFMTMILFQLNFYTDTLGISAAVAGSMLLVGRLWDAFFDPMMGVLADRTNTRWGKFRPWVLWTALPWGVVMVLAYTVPGFGTTGKVLWAAVTNVLLMTLYSANNTPYSAMGGVMTGDSDERTKLSSYRFVAAMLAQLIVGGFTLPLVAKLGQGNNAKGWQMTMGLWAIVCVVCFVITFAVSRERIQPPKEQRADPKRDFSALLKNGPWVAMFVLTISHFVFVAMRGGTMFYYFQYYVDPTRLLAFLQRVGLPQATAASPDGGHSLLNVLGLILNADRSNVASVGFSLFNIMSQAVTVVGVVASTALAARYGKRAVALVGFSLAALFLAAFILLPADAVGATFGLEVLRALSYAPTIPLIWAMFADVADYAEWRTGRRTTGVVFATILFGLKTGLSLGGAIAGWLLSGYGYVANAAQSARALQGIRMTASVYPALFLVVVVVCLVFYRITRALNIQIQDELSARRAEFTGIAEAAASAR
>NZ_CP007128.1|WP_025413478.1|5249526_5250681_-|endo-1,4-beta-xylanase
MKTTSSLVRAAWCGALMAAACGHPSASPSPAAASLKNAFRNDFRIGTAIAPRVFDETDSVDVRLVKTHFNAITPENVLKWEVVHPRPNEYDFSQSDRYVAFGERNGMFIVGHTLVWHSQTPRWVFQDSAGQPLTRDALLARMKDHIEHVMGRYKGRIKGWDVVNEALNEDGTMRQSPWYRIIGDDFVVKAFEYAHAVDPAAELYYNDYNLATPAKRDGAIALAKRIRAAGIPVAAINSQDHHKLDPNVPSVALVDSMFQAIGAAGFHANVTELDVDVLPRPMGGNTADVSARAQMAAASNPYTASLPDSVQQQLARRYAALFAVYEKHRDIIDRVTFWGVTDATSWLNGFPVRGRTNWPLLFDRQGRPKPAFDAVLAAARRQAM
>NZ_CP007128.1|WP_025413477.1|5248382_5249504_-|endo-1,4-beta-xylanase
MTQKHTPWTTIVLLALAACGGGSDAPTTPTTPATPTTPTTPTTPTTTASPLRELAAAKGRSFGVALDAKFFANDAAYNALVAREFDMVVAGNVMKWEPLNRNGRFTYRWANPDALVAFAQTNGMKVRGHTLAWHQQNPTWLTGATWSADTLRQLLKEHVDSVVGHYKGKIHAWDVVNEALNDGSGSLRTTGSPWAPALGRDYIDVAFTEARRVDPGALLFYNDYNLEFPGAKQDSAFALIQGMKARNVPIDGIGFQAHLQVGGGATAPSRQALVNTFNRFAALGLKIEITELDVRVRTPGATAADLAAQAQAYGDVVAACLAVSACDAILVWGVNDGESWINTTFPGWGQALLFDDALGTKATYTAVRTALGG
>NZ_CP007128.1|WP_025413476.1|5245368_5248353_-|glycosyl-hydrolase-115-family-protein
MLTRSIVIRWLALACVVAAPAARADAQADSSYVTARAGGDRFALAADGRTAPLYASSADFAGVLRAATDLRADLQRVTGAAPRLVVDSAPNANRAVIVGTIGHSPLVDRLVRERKIDTSGVANRWETYLLQVVDRPLPGVDRALVIAGSDKRGTIYGIYDLSAQIGVSPWYWWADVPVRRHEALYVAAGRRTAGTPAVKYRGIFINDEAPAFSGWTREKFGGVNHVVYEKMFELILRLKGNYLWPAMWGNAFADDDSLNAKLADEYGIVMGTSHHEPMTRAQQEWRRYGKGVWDYGVNDSTLRDFWRKGIERMGSRENVVTIGMRGDGDRPMTTNGESNVALLERIVADQRKIIADVTRKDPAQTPQLWALYKEVQEYYDKGMRVPDDVTLLFSDDNWGNLRRLPNPKDRGRAGGFGIYYHFDYVGGPRNYKWLNTNPIARVFEQMRLAYEYGANRIWVVNVGDLKPMEMPIQFFLDYAWNPRAVTADRLPEWTRRWAAQQFPAEHAAEIADVVTTYLKYAGRRKPELLDTATFSLVNYGEAERVAADWDSLLARAERVSHEIPAPYVDAYYELVLHPVQAMQNLNALYFTVARNRVYAQEGRASTNDLADSARRLFDRDAEITRRYNTQLAGGKWSHMMDQTHIGYTYWQEPPRNAMPRVDVIQVPAPADMGVAMVEQNRPAPAPRGPGGGPPPGFFRPPPPTLPTFDAFQRQTYHIDVFDRGTAPFEFTATSVAPWLRVTPEKGTVTKDQRLAVTVDWSRAPAGTTPGTIAVVGPNGARVTVQATAFNPPAPKRDAIVGFIEGGGVVSMEAEHFTRAVNASPVTWERIPDLGRTLSGMTPTPVTAASVTPGGASPRLEYRVFMFDSGTVSVHAFVSPTLNFTAGQGIRYGVSFDDEAPQIVNIHADSSSSGRTDGNGAWEQGVSNSIKIHVTQHQLARPGDHVLKLWMVDPGLVLQKLVIATTDLPRTYLGPPESYHRGGGTVTTSRAADDK
>NZ_CP007128.1|WP_104023206.1|5242840_5245333_-|glycoside-hydrolase-family-9-protein
MAWLVPAALAAQQPLRVDSLGVLRGRGADVLVFNDYYGQFGDEKISGVELIHHGVRTATNGDVRLSPTPEQWDPTPRLVGRDVDRASGRVTARLSYPAYDFSYRVEASPSGDGVLVRVLLDAPLPERLVGRAGLNIEFLPSAYFGKTYLADGAPGLFPRRESGAVERAPAPLGNAVGGPTSVPGLEASAMASGHTLVLAPEDAERRVTITARGGATVALYDGRNKAQNGWFVVRTLLPAGRTGAVVEWLLIPNRIPGWTRPPVIAHSQVGYLPDAPKVAVIETDPNDAARPVARLLRVEADGRLTPRVARAPVRWGRYLRYDYARFDFSSEKEPGVYVIEYGAARSEPFRIARDVYADVWQPSLDTYLAVQMDHVLVNDRYRVWHGAPHLDDARQAPTSYVHFDLYAQGPTTDTKYAPGEHIPGLNVGGWHDAGDFDLRTQSQYATVLALVQARETFGVDWDQTTVDERRRWVDLRHPDGVPDVVQQIEHGTLALLAQYRAVGHAIPGIVEPTLGQYTHLGDAVTMTDNLVWDPRLDSLAVDSARWRSGTSDDRMAFTSKNTPLDYGAIAALAAASRVLRARDAALADECLRTATRVWDEEHARETPIVFRAGNTTGGPLEAEELKAAVELLITTRDAKYARRLDAMWPTIESRFDGYAELAVRAMPLMDASWRERVERAVRAYRTRLDAASAQNPFGVPITTGGWAGSGAVLGFAMRNAVLHEAFPEIIGAEHVLRAVDFLLGAHPASSTSLVSGVGAHSKTVAYGNNRADYSFIPGGVVPGVLIVKPDFPELKEDWPFLWYEGEYVIPEAAMFVYVANAAQRLYRSTP
>NZ_CP007128.1|WP_025413474.1|5241755_5242844_-|galactose-mutarotase
MSTTSLDLTRGVRCEPFGVTSSGETVHAYTLTNANGVALRFLTLGGIIASLHVPDRDGALDDVVLGYDTLDAYEADPRYLGTLVGRYANRIAGGRFTLDGTEHVVDANDGPNHLHGGPGGFHTAVWATEPFADERGVGAVLRHVSPDGDEGYPGALAAHVRYTLTQDDALVVEYHATTTRATPVNLTQHAYFNLAGHGAGDVCEHLLTLSASRYTPVDALLIPTGELRAVQDTPFDFRTPTAIGARIDDADPQLAHAGGYDHNFVIDGDAPGLRFAARVHEPRSGRALDVFTTEPGVHFYSGNALAEGPPGKGGVRYGARSGLALETQHFPDSPNQPHFPSTILRPGDTYTSRTVFRFSSTG
>NZ_CP007128.1|WP_025413485.1|5262859_5264932_+|hypothetical-protein
MRSHRTTIATILAAAVFAGDASAQAITATIDAGAKGPPISPLIYGMFIEHAGGLLEQGFRAELLDDRKFYFAIGQRAPAGAAPGRRGAARGWQPLGAADAVRMDSAHAYASDHVPLVMLAGSEPRGIAQDGVALKSGVGFTGRIVVAGDPGAHVTVSLVWGPGAADRGTVRLAPLTSRWTTRRFEFARHPTSTDSARIEIAGTGHGAFRVGAVSLMPADNVRGFRREVVAALATLHSGVYRFPGGNFVSGPYDWRDAVGDPDRRPPRWDPVWGALQPNDFGLDEFMTLCELLDVAPYVTVNAGFGDAVSAAQEVEYANGAATTPMGRRRAANGHPAPYGIKYWGIGNEMWGDWQFGYMSLDQWIAKQGQFARAMRRVDPTILRVAPGAMPDAMTGSGMARKLTGQPVAEPLGKADWSAALLSRSIDDFEVLSQHFYVYGGTHFDLEQGKQVPDDPSLSFLEWSRKPANMVRVDYEHFQTYREHIPAIRRKPITVALDEWAYSGSPPGAFKPVPAYAWALNELFRHSDTFTLGGFTFAGSTLSATRTDAVLNPIGLMFRLYRAHFGTVPLGVSGTSPQPERTGRVGGEVPNVNAGSPTYPLDVAAALTADGKTLTVSVVNPSDRPQMLRLDLRAIAVAGPGTVWRMAPGSVTAANVVGREPQVRVDQATADATEPLVIPAISVGVYGFPIR
>NZ_CP007128.1|WP_025413486.1|5264944_5266018_+|prolyl-oligopeptidase-family-serine-peptidase
MLRHALLFTAGAIAAATSLGAQPARPAPNVPVPVPNAAPVVTERVKVHGTSLEGNLEGDSPDRDVIVYLPPSYAKSGRRRYPVLYALHGYSISNERWTTEIHTPQTIEGAFATGTREMIVVLANAQTLHNGSMYSNSVTTGNWEDFIAHDLVAYVDTHYRTIADRRSRGVAGHSMGGYGTVRIAMRHPDVFSAFYAMSPCCMSARGAPSAESATRLEAVVAGGDTAGSRSLDFGTRATLASAAAWSPNPNAPPFYLDLPTKDGVPQPQVLARWAANAPLAMVDQYVANLRRYAAIALDVGDQDGLRRDTAELHRILDAYGIANTFELYPGDHVSAVADRMQNHVLPFFGKYLAFDAR
>NZ_CP007128.1|WP_162178530.1|5266020_5268726_-|glycoside-hydrolase-family-2-protein
MALAAALLIPSGALGAQPSPRSRVSLDDDWRFTRGDPAGLTVDLRYDVRPEVRDDRDDRPADAQPRAATVPNATATTVLKPWILPTGNRFIADPARRHAPPATPWTGDVPYLRADFDDGAWQRVRLPHDWAIAGPFLTTGNTGGMGRLPTAGVGWYRRKLRVPASDAGKSVFLDVDGAMSYATVWLNGALVGGWPYGYTSWRVDLTPYVVPGGINQLAIRLDNPPQSSRWYPGAGIYRHVWLTTTDRVHVAQWGTVVRARDVSGEAATLDIDVDIDDDAASDATVRTTTRIYALDAAGRRGAAPVASLPAVDTTIAAGTRVVVRRSVVLRHPRRWGPPPTQRPNRYVAVTTLTRGGRTIDTYETRFGVRDVRFHPDSGLLVNGEHVPIRGVNDHHDLGALGAAFDARAAERQLLTLRAMGANAVRMSHNPPAPELLALTDSLGFLVLDEAFDVWERAKTPLDFHLVFDDWHEPDLRAMVRRDRNSPSVILWSIGNEVGEQYTDTAGARIAARLRDIVRSEDPTRPVTSAMNYAKADMPLPAVLDVIGLNYQGEGIRQEPEFEGTDRIRTPPQYPAFHARFPDKAVLSTETASAFSSRGVYLFPVEKGITSPVRDGRGGDAKIRQVSAYELYAVDFGSSADKVFASLDRHPYVAGEFVWTGFDYLGEPTPYYSSRSSYSGIIDLAGFPKDRFWLYQAHWRPDLPMAHLLPHWTWPERVGLVTPVHVFTSGDAAELFLNGKSLGRKTKGPYEYRLRWDDVVYEPGTLEVVAYKNGRRWATDRVTTAGAAARLTATPDRPTIRGDGRDLAFVTVRVTDAAGVTAPRASDAIRFTVDGPGEIVATDNGDPTSFEPFPSHTRRAFNGLALVIVRATPGRTGRITVTATADGLRAGAATISSVHAPR
>NZ_CP007128.1|WP_104022969.1|5268743_5269211_-|Plug-domain-containing-protein
MRSHSGLLPRLATLAVLGAAAWGGGCAANQRRPERRLDRTVITREQMLDGNYTNAFDAVSALHSIWLRPRGVDSFLVPSIVWVYVDGIRVGGVDALQSIQPRLVNTIRFYDGASATSRWGVDNGAGVIHVSTWKEGAPGMLVPDSTRRPARPDST
>NZ_CP007128.1|WP_158508877.1|5269329_5270967_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRTHTVLALTALVGAAGCSDLKEVPVTGVAADYFQSTAGANAAVTGTYAQLRAFYGGEQEIRMTMVGTDSWDKGGQLLDQSYWNDYTPQLNGSAGGSANDLLGKWQAGYSAINAANTASASIGSATGIDATTKNTRLGEARFLRALLYFNLVRTYGALQLNLEPTQGVVTTATRTSPDSVYAVGIIPDLQFAIANLPVKQTELYRATKGAAQTLLAEVYLTRAKQGDFDLARDLATAVINSGAYKLNPNYRSLFCANTDDLTGPCSYAPAQKTDPEIIFSVQFVGDGGTDTFGNNLHLYWVMAYDLSGIAVPTLARTPAYGRPYRRVRPTLHLLNLWNRATDSRYDATFQTLWRQPNGDTAIFMPGTATANKVGQGRKYGQNEYGVDLFPTMKKWLDQTRADANTFPGHRDRTLWRLADAYLLRAEANIRAGRPSEAIADINVLRTRAAKPGADNTISASEMTSFNASPIDFLLDERERELAGEEGRWYTLARQGTDVFLRRIKSFNASAAPNVKATHIVRPIPQTQIDRTEGGAAAFPQNPGY
>NZ_CP007128.1|WP_025413488.1|5270999_5274053_-|TonB-dependent-receptor
MQRWVLTAVVALCFAGTAQAQTAGRLTGTVSIEGRGLPNATVIVVGTNPVLGTTTDAAGRYSLNAVPAGPRQVQARLIGYAPLTLPVTITAGQTATLNFGLTSQAVQLQGIVTVGYGTQSRREVTGAVSSLKAEDLHQVVSANPLDAIKGRIPGVDITSSSFEPGAAAAIRIRGTRSISASNNPLYVVDGVPITGDLRDIDQNSIDRIEVLKDASAAAVYGSRGANGVIMITTKKGGTNGITEFTLNSTYGASKIRREVPMMGAQEFANFRREAYRNGSVAAAAQACANYMTNPAPCDVFALDPTMRANLAAGVNTDWQQELLRTGSLGNTQLGFAGGNAETRFRAGFGYLNQTGIAITQDYNARTFSFNVDHNHKRLNLQLGVQAAKNHRDAGLGAIMWDEALFNPPLGRVRDSTGAYVFLPTEDGLLVNPVMNAQSYIHQIDRTNLLGTLTGSFELLNGLRFHTNFGPQYTNQSDGALQGIYTRAKRGQGAPDATDRRTQNTNYTLSNFLDFDRTFRGDKHHVQATALYEIASFRTVFDSAAALALPFDNQLWYSLGTGSTPTLNGSYTKTALQSWMGRVNYTLLDRYTFSATGRYDGSSVLAEGHKFAFFPAASLGWQIGDEPFMQNVPGLSDLKLRLSYGRVGNSAIGAYQTLGLLGRTWYASGGNYLVGFQPGAIPNPDLRWETTDKFNLGVDFGFFQQRIAGSVDAYRENTHDLLLPRALPYSSGYTSVLQNVGATKNLGLEFALTTQNIEPGHGLEWSTDFNISVNRNRIVSLQSGLTADVGSNRYVGQPINVYFDYKYIGLWQIADSALARTSCGCTPGSIRVADLNGDGKITADDRTIIGRHYNNPRWQGSLNNRFKFGALDLSVLAAARVGYDINDSFQAAYNGLAGRFNNISTNYWTPENQSGTDPRPSTNGLGSYAGSRNYVDGSFVRVRDITLGYTLGKTLAQRISASRARLYVRAQDPFIFTKYKGWDPEAGFSAGNGNSQSSQPDVGGPAFRSLLAGIDVTF
>NZ_CP007128.1|WP_104022970.1|5274455_5275478_+|LacI-family-DNA-binding-transcriptional-regulator
MTPTTNARPTIIDVAARAGVSKSLVSLVMRGERTVSDEKRALVLAAAAELGYRPNAVARSLVRRRTNLFGVILSDLHNPFFAEVIDGVQEAAGAEGYRTIISTVNLSPAAEQRALDTLLELRVDGLILASPMFGVQSIAAASRELPMVLVARRSDVPRVDSVTNDDPTGARLVMEHLANLGHRRIAHIDGGRGAGAAERREGYERSMAERGLAEFVHVVPGSYTEEGGRHGVEALLAAGGPRPTAIFVANDLAALGALAVLAERGIRVPQDVSIVGYDNTSLAALRHINLTTVDQPRPDMGREAVALLLERLAGRREAARHVLVTPTLVVRGTTAPPNEG
>NZ_CP007128.1|WP_025413489.1|5275563_5277792_+|hypothetical-protein
MKPLLSLVLALAATTPAAQPPAIDRQALEQDHRNMMDQLGIRRLRPGPSGNEQAPNHANYDTALANPFPKLPDVLTLRNGRKVTTPALWAKRRAEIVDDFEREVYGRIPKNVPKVTWSVAETDTGTVGGRRVVGRQLLAHVDNSAYPAITVDFPVTLVLPADAKGPVPVMIMFRGGSLAQVLGTRDSGLGTRGGRVPSPESRVPSADAPPTEQLVVDGWGFAFVNPNTIQADNGAGLTRGIIGLVNKGQPRKPDDWGALRAWAWGASRTLDYLETDRAVNAKQVSVEGVSRYGKAALVTMAFDPRFAAVLIGSSGKGGATLHRRNWGEAVESLTGSGEYHWMAGNYLKYGADSAAFGHGDPSQLSVDSHELLALCAPRLTFVSYGVPEKGDAKWLDHQGSFMAAIAAQPVFRLLGAKDLGRSDDYTTERMPPVNVGLLDGQLAWRQHDGGHTDAPNVKYFLSWADRFYGRSYTPAPPVRDSGLGTRDSSAPSPQSRVPSPAIQPWPADRPRARTDSNSMIAHRQLLAKRTQGKIDVYYEGDSITRRWGATDYPQFLENWKQNFFGWNAADFGWGADRIENMLWRIDEGELDGVNPKVIVLLAGTNNLPGPGTEDEKVADITRGLRALVGRFRQKAPGATVVLTGITPRTGSPEMAHAIVRINENLARMADGRTIRYVNVNDKLGDADGKPLDGMTMDGLHPTVKGYQIWADALKPILREILGPPKATDQAPPPTGDPSAKKP
>NZ_CP007128.1|WP_025413490.1|5277971_5279120_-|DUF1080-domain-containing-protein
MTFRPRSARLRVVVPAIAALLLSSAADAQQPAYPSAWRQHELNRPHAKPVTPASTPGAPPSDATVLFDGRDLSAFVGGRGDSTVAPRWKVENGYVEVVPRTGSIRTKEAFGDVQLHAEWAEPDPPQLTGQNRGNSGMILMGQYEVQVLDSYGRTDTYADGTVGAIYGQYPPLANASRPPGQWQTYDIYFRRPRFRADGTLQEPARVTVVQNGVLVQNNEIITGPTSPIPPSGYVQHADELPLTIQDHGQAIRFRNIWVRRIEPRPEPPAGYVPNAVALSAALLNGTAGEFYRERAANAPAPANAANRPASPTYTIIVKGSEIWVSTGGFGGSTPAVRAIPTAPDRLWLTVRTGELVLTRDAQGRVTSVREADSNAPAAVRRE
>NZ_CP007128.1|WP_025413491.1|5279238_5280864_-|Gfo/Idh/MocA-family-oxidoreductase
MDNNDVSRRSFLGTVGTVASGAFAFTIVPRHVLGGPGYVAPSDRVNVAIVGAGGQGMSNARALVAGGQNVAVLVDVDYGFVDRQVANSTRPRPNAPNAPNPQQANVGAQLADQYAKATRYADFRVMLEKEKGIDGVVIATPDHGHAVQAIAAMQAGKAVYVQKPLTWSVAEARALAATAKRTGVVTQMGNQGHSFDGTRQMVEWIRAGLIGPVREVHIWTNRPIWPQGIPRPTTEALYTPPRGPVTAGGDGGVRAAAGGGPNGTPNGPTAPGGAPAIDWTARDMQRTFATLMASGLTAPPPGLNWDLFIGPSPMVPYHPIYHPFNWRGWTDWGMGALGDMGAHLVDQPFWALDLDLPTSIEATSSPFGLDVDASPATYPQAMTVHYEFAARGKMPPVKMSWYDGGLMPPRPEHLPDDVVLDRSGGGYFVGTKGIILYATYGNNPRLYPASLTEQAAKIPHSVKRITVSHEINWANAIMGKAEPSSDLAYASRLTETMLLGIVALRTGQGVKIAYDAANMRVTNRDDANQYLQREYRAGWTL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007128.1	1463085-1463102	0	1.0
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007128.1	1463431-1463448	0	1.0
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007128.1	1463460-1463477	0	1.0
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007128.1	1104373-1104390	1	0.944
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007128.1	1909101-1909118	1	0.944
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007129.1	861949-861966	1	0.944
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007129.1	120353-120370	1	0.944
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007129.1	221950-221967	1	0.944
NZ_CP007128_1	1.1|1463114|18|NZ_CP007128|CRISPRCasFinder	1463114-1463131	18	NZ_CP007129.1	460376-460393	1	0.944

1. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 1463085-1463102, mismatch: 0, identity: 1.0

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgtct	Protospacer
******************

2. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 1463431-1463448, mismatch: 0, identity: 1.0

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgtct	Protospacer
******************

3. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 1463460-1463477, mismatch: 0, identity: 1.0

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgtct	Protospacer
******************

4. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 1104373-1104390, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgact	Protospacer
*************** **

5. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 1909101-1909118, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atctacggcgggacgtct	Protospacer
*** **************

6. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 861949-861966, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgcct	Protospacer
***************.**

7. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 120353-120370, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacgcct	Protospacer
***************.**

8. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 221950-221967, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atcgacggcgggacggct	Protospacer
*************** **

9. spacer 1.1|1463114|18|NZ_CP007128|CRISPRCasFinder matches to position: 460376-460393, mismatch: 1, identity: 0.944

atcgacggcgggacgtct	CRISPR spacer
atcgaccgcgggacgtct	Protospacer
****** ***********

2. NZ_CP007129

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	41170 : 50843	14	Pseudomonas_phage(16.67%)	terminase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP007129|41170:50843|DBSCAN-SWA
ACTAGCCCAACGGGCTAGGTCTGGCGTTGCGGTCCTCGATGGCGCGCGCCGCGAGCTCCCCGCTCGGCCAGATGCGCGTCACGGCAGCGCAGCGGCAGTTGTAGTCGCCTTCGCCAACACGACGCCACACGCGGCCCGTGGCGGGGTCGCGGAACGGCTCGCCCTTCCGCACGGTGCGCCGGTGCATGCGGTGGTGCTGCGGGCGCTCGCGGCCGTCGAGCCGGGTCACCCACGTCGTGGTGATTCGATCGGCGGTCACGCGCCCGTCCGCGATCGCCTGGTCCCACACGCTGTCCTGCGCGAGACGCAGCGCATCGAGCGTCGCGGTGCGAGTCGCGGTCTCCGCGCGCCACGCGAGGAGGCGCCGCTGGTATGCGGCGACGCTCGTCTCGATCTGCTCGCGCGTGAGCGCCTTGCCGCCCTCCGCCGCACGCCGCAGCGGACCGTCGTAGCGCCGATCGCGCAGCGTGCGCGTGAGCGCCGTGCGGTCGGCGGTCTCCAGCTGGCGGCGGAAGCTCGCGACGAGCTGCACGTCATGCTCGCCGAGGCCGATGAGACTGCGCACCTGGCGAGCGGTCTCGCGCGGGTTCACGCCCGCCTCGATGCCGGCCGCGATCGCCGCGCGGAACCCCTCGCGCAGACTCTCGGTCATCGTGCGCAGCACCTCGGCGCGGTACGAGGCGAGCGTCGCCGACACTGCGGGGTGCAGCACGTCGAACGTGAAGCGGATCGCCGCACCGCCCGGGCGCGGCGACGGCACGGGTGGGAGGTCGCGTGCCCAGGCAGCACCGCCGGTCGAGAGCACGGCGCGCAGCGCGTCGCCGACGCCGTTGAGCGCCGCCACCGCGTGCGGCCCGCCGAACACCGCCTCGAGCGCCGCCTCCACGTCGCCGGTGGTGATCGCGCGCTCGATCGCCGAGAGCGTGGCGGCGTCGCGGATCTGGCGCACCGCGCGCAGCCAGGCGCGCGCGACGTCGGGCGTGAGCCGATCGGCGAGCGCTTCGAGGCGCGCGAGTGCGCGTTGGTCTGCGGTCGGCGCCGTCACGGATCGTCGGCGACCCGCCGATGCACGATGTGCAGCCCGACTATGCCGTCGTAGAGCTCCGGGATCGCACAGGGCTCCCAGCCCTTACCCTCACAGCGGTAGCAGTCGGCGCCGGCTTCGCCCTCGCACGCGGAACAGGCCTGCGAGACCGCCGGTCCGCACCAGCAGGTGAGCCCCTCGGTGTCGTGCGGCCGCACGTCGTCGAGCGGATAGGTGTGGACGTTAGGCACCTGCACCCCCCGGGGGGTCGACCCGATAGACCGCGGTCATGCTCACGACGCGCGGGTAGCGGTGCAGCCCCTGGAGCACGCCCCACCACGGGTCCAGCACGCGCCCGTCGCGCAGCAGCACAACAGCGTGCTGCCCGCTGCCGCGCGTGTTGATCACCTCGACGAGATGAAGGTCCGCCCACGGCGCACACGGCCACGACTCGCGCCGCGCTCCGTTCAGGCGGCTCAGGTAGTCGAAGCGGAGGCGCCACGCGAAGCCGTGGGCGTCGAGCACCTCCTGCCACTGGTAGCGGTGCGCGCCCTCGACGGTGAAGTCGTTGTGCGCGACGAAGTACTGCTTGGTCTCGAAGTACGTCTTGCCAATGATCATCGCGACGGCGGCGACGACGCAGCCGGAGTTCTCCGGCTGATACACGAACTTCACCGGTAGGTCCGTCGCCGTGCACGCGCAGGGCATCCGGTGGCGCTCTCCCGTGCCGCGATGGAGGATGAGGCGTGCCTTCTGATCGGCGCAGTCGGCGCACGCGATCGCGGCCGGCGCATCGGCGTTCAACGCGATCACGCCTCACTCCCAGCGTTCGGGTCGCCGTTGCCGTTCACCGCGGCCGCGTCGCGCACGGCCTGGTCCTGCGCGGCGAGCGTCAGCTCCTCCTCCTCGAGGTCGATCGACTCCGGCAGCACTCCGCCGCTCGCAAGCAGCTTCAGGAACGTGCCGCGCGTGAGCCCACCATCCTTCCGGATCGTGTTGAGCGCGGTGAGCGTCGGCGCATCGAGCTGCCGCACGTCGTACGTCGTCTGCACGCGCACGGGCAACGCCTCGACCGGCGCCGCCGCCGAGGACGCGAAGCGCGCCGAGAACCCGACGCCCTGATCAAGCATGTCCTGCAGCCCGAGCGCCGCCAGCGCGAGCGAGGCGTGCCCCGCCTGCGCGTCGTACGCGCGGCCGGTCGCCGTCTCGGGCGCCGTGTCGCGGCGCAGCAGGAAGTCGAGCGACAGCGTGGCCATCTCCACGCGCAGCCGCTCGAGCTCGACCTGGCTGGCGGCCATCGCGTCCGCCGGCGCCGCGACGTACTTCACGTCCCCATTTCGCGGCACGTCGATCGAGGTACCCGGGCCCACGGCGACCTGGGGGAACCGACCATCGTCGCCCGGCTCGCGGCCGACAAGCACGAGGATCGGCGCGAGGGAGAGCGCCATCGACCAACGGCGGTCGCTCGCCGTGCGGTAGTAGTCCGCGTTCGTGTCCGCGAGCGCGAGCAGCGGCGAGTCGGCGACGAAGGGCGCCGTATGCGGGCTGCCGTAGCCGACGGCGAACGGGATGACGCCGAACGAGCGGCCGGTGCCGTCGAGCACCCAGCCCGCCTCGCGTGCGACGAAGCGTACCGGCTCCGCCTCGCCGGGCCGCTCGACGCGGTCCCAGAGGACGTAGCGCACGCCGAGCGGTCGCTCGGCGTCGGTGCCCGCGGCGGGATCGTCCGTCCGCACGAGCAGGAGCTCGCGGAAGCGCCGCGTGGCCGTGACGCCGTACGCGCCGGCGTTCGTCTCGACACGCTCCTCGAGCACGAGCCGCGTGAGCGCGAGCCGCGTCCCGCCCTGCACGGGATCCACGGCGAGGCCGATGCGCCAGTTCAGGATCTGGTCGCGGCGGTAGGGCAGGAGCCGCGCGACGACGCGCGTGCTCGCGTCGGGCACCGTGCCGTCGAGCCGCGGCGGCACGTCGACGAGCAGCCCGGCCAGTCCGTCGGTGAGCATGTCGCGGAACACGCCGCGCGCGACCGTCGCGAGGTCGTGGCCCATGCCGTCGGCATCCTTCGCGAGCGCCTCGAGCGCGTCCGGCAGCGGCGCGGGTTCGGTGCTGCCCTCAGGGTCATCCCGCTTCGGACGCTGCGGCGGGACGAGCGCCGGCGGCGTGGAGAACACCATGCCGAGCGAGGCGATGAGCGCGCGCCCGGTGGCCGCGTACACGGAGCTGTACTTCGTGCGGGCCTTGTAGGTGTCCGAACTCTCGCCCTCCCACTTCGGGAGGTGGGTCGGACCTGCGCGGCGCACCGCGTCGGTGCCGGCGACGAAGTCGCGGACGCGACCGAGCTGCTCGCGCGCGTTCTCGAGCTCCTGCCGCGCGTAGTCGGGGCGCTGCTCGGGCGGCGCACTGCCCAGGATGTCGGCGGGGAGGGCGCCGTTAGGCGCGGCGGTCGTGGTAGCCATGGTGAACGACGGAGGGGATCAGAGGCGGCCGAACGCGAGCAGCATCGAACGCCGGCCGATGTAGAGGGCGAGGCCGGCGATCTCGTCGCCGCGTGGGCACGTGATGCCCCAGCGTGGCGACGTGAAGCGCGCGCGGGTGAGCGAGAGGCAGTGCGAGCGGGCGACGAGAATCCAGCCGGTCCACCCGTCGTGGCGGTGTGCGAGGAGGCGCATGGTCAGAGGGCGGTCTGGTCGGTGCGGGCGCCGTGCGCGACATTCGCGCGGCGCGCAGCCTGGCCGAACACGCTGTCCATGAAAGCGAACGGGTTGCCGGCAGCGCGCTGCGCGATCTCCTCCATGTCGGCGGCCCGGTGCGCGGCGTCGGCGACGGCGCGCTCGCGGCGCACGACGGCGGCGACGAACTGCGCGACGAGGCCGGAGAGCTCGCGGGCCTGCGTCGCGTCGGGGACGTTCGCGTTGACCCAGCGGGCGAGCGCGGCGTTCGTCTCGGCGACGGCCTCGTTGTGCGTGGTGGCCATGGTTTCGTTGGTGGTGATCAGCGGTAGGTGCCCGTGCCCCAGACGCCCACGGGCGCGGAGCGGCCGAGCCACGCGAGCATCTCGGAGACGAGCATGTCGCGGCCGTTCAGGTCGTAGCGCCCGTCCGCGCCGCGGCGCACCGCGAACGCGTCGCGCAGCGCGGCCTTCGACGGGTTGCCCGCGACACGCTCGACTGCGGCGGTCACGAGCTCGCGGCCGGCGTCGAGCATGAGCGGCTTCGACTCGGCCGTCGTCGCCCAGCCGATGCGGCCGGACTGCTCGCGCTGCGACTGGTCGTGCGCGACGCGATGGTAGATCGCGGCGAGCGGGTACTGGTGGTCGTCCACCAGGTGGCGCAGCACCGTGATGCCGTGCGCGTTCTTCTCGACGACGAGGAAGGCCGGCGTGCCGCCGACGGCGAGCCGACGGCCCCACGTGTTGAGCAGCGCCGCGAACTCGCGGGGCGTGATGTTCGGATCCTCGAAGGTCGCGCGCAGCTTCCACGTCGTGCGCGTGCGCGCCGTGAACGTGCTGCGGTCGCCGCCGGTGCCCTCCGCCGTGTCGGCGCCGATGATCACGCGCTCGTTCGTCGGCGCGTCGTAGAGCTGCAGCGCGCCATTCAGCTCGACCGAACGTGGCTCCGGCGCGGCGAGCATGAGCGCTTTGATCTGCTGCGCGTCGAAGAACATCCCGCCGACGGCGGCCCAGCAGCTCTCGGGATCCTCGGCGTACTCCTGGAGGAACAGCGTGCGCGTGAGCTCCGCGATCTTCGCGCGGCGCCACTTGAGCTGCTCAAGGTCCAAGCCGTGGGCCGTGAGGAGCAGCTGCTCCTCGTCGGTGAGCGCCCCGAGCTCGTCGTAGGCGAACAGCGGTAGGCGGTAGTTCGCGCGGTCGCAGAGCCACCACGGGTAGAACACGGCGCGGTAGCCGCGCGCGGCCGCCTCGCGCCAGAAGTTGTGCGCGGGGCTGTCGAAGCCCGAGGCGGTCGTCTCGAGGACGACGATCGAGCCCTGCGGCACGAGTGCCGGCGTGACGCTGCCTAACAACGCGACCGGGTCGCCCCAGAAGGCGAACTCGGAGCCGTGGAAGCGCTTGATCGTGAGCCCGCGGCCCGTGCGCTTCGATCCGGCGGTGCCGGTGTAGAGCCGCGCGTCGCGCCCGGGGAAGCTCACCTCGGTCGTACCCTTCTCGCCGAGGCGCGGCAGGAGCGCCGGCGGGAAGTGCTCGATCGCGCGCGTCGTGATGCCGAAGAGCTTCTCGGTGTCTTCCTTCGTGTGCGCGAGCGTGAGCGCGTCGAACCCGCGCTCGCTCCAGATCTGGTGCAGCGCGCGCCCCTGCTGGTCCGTCGACACGCCACCCTGCCGGGCCTTCAGGACCATGATGCGGGCCTGGCCCTTTGTGGTGAGCTCCTCGCGCTCGACGTCGCCGATCGCGCGCTGCACGTCGTTCAGCACGAACGGCAGGATCCGTCCGTGCTTGTCGCGGATGCGGTAGCAGCGCCGCGCCCACTCCGCGTAGTCGACGCGGAGCCGGTCGACGAACGCGATCGCGCGCGCGCGCCGCGCCGGCGGGGCTGACTTACTCGCCGTCGCCAGCATCGCCCGCACTCTCGCGCTCCGCCTCGTCGAGCAGGTCCTCGATCGTCTTGTCGCGCGTCTCCACGCGCTCGACGAGCATGCCGAGGTGCTTCGCGACGTTGAGCAGCGCGCCGTCCTGGTCGCGCATCCGCACGTCGACGCCGTGCTGCGTCTCCTTCACGCCGGCGTACAGGCGGAGCGCCGCCGGCGACAGCCGCCGCGTGTCCTTCACGAGCACGCGCGCGACGCCGTCGCCCCAGCAGCGCTGGCACTTCGGATTCGGGTCGCGCCGCGGGTCGTACCCGATGCCACCCTGCTCGTCGAAGGCCGGGAACGCGTCGGCCGCGCGCTTCTTCTTCCGCTCCCAGGCGGCGCGCTCGAGGTCATACTTCGCGCGATCGCGCTGCAGCTCCACGGCGGTGCGCTGGTACATCCCGCCGCGGCCGTGGCAGTAGCGGCACGAGCGGCGCTGCAACCTCCACCAGCTCGTTCGGGTTCGCATTCGCGAGGTCCCACCAGCGCTGGAGGACGTCGTCCGCCTCGATCTGCGTGCGGAGCGAGCGGGCCGCCTTCGCTTCCCGGATCGCCGCGGCGATCTGCGGTTTCTGGAGGTTCTCGTAGCCGATGTTGGCCGCCACGCGCGCCGAGTAGCCGGCCCGAATCGCCGCCTGCGTCGCGTTCAGGTCGACGATGAACTCCTCGACGAAGCGCTGCTGCTTGGGCGTCAGCGCGGGCGCATCGGACGTCACGACGCCAGCTGCAGCGGAGCCGCGGAGCCGTGCAGCGCGCGGTCGGCCGCGCGGTCCGCCTCGAGCATCCGGGCGAGGCGGCCGAGCCGGGGCCCTTCCCATGCGCAGCGGCTCGCGACCGCCTGGGCGAGCTGCTCGACGCGCGCGCGGCAGATGCCGAGCAGCGCCGCGGCCTCACGCTTCGAGTAGCCGGCGACCAGGAGCTCGGCGACCGCGCGCTCCCGGGGCGTCAGGGAACGCGAGGGCCGGCGAGCGGCAGGGCGCGCGGCCAGCGGCCGGGGAGTGCAGCGACGGAACGTGACGCGGTTCTCGGGCACCTTGCCACGAAACCCGATTGTAGCCGGCCCGACCATTGGCACATGCGGCTAGCCACATGTGTCTAGACACATGTGCCGAGAACCCGCCAGTCCGCAGAGGGCAGCGTTAGGCCGCGTGGTCCTGTGAGACGGGGAGCTCCCGGTCGCGCGGCGCCACCGACTCCGCCAGCCGCCGCATCGCGTACAGGACGACACGGTCCTTCGTCCCCGCGTTCGGGGCCCAGTCGTCGGGCAGCTGCGCCGCGATGTCCTCGACGTGCTGGCGCACCGTGCGCTTCGACACCCCCAGCGCGTGCGCGATCTGCTTGTAGCCCGGCGCCTCGGCGAGGAGGGCGAGGACACGGGCCTGGGCGGGCGTCAGCGGCCGCCGGAGCTCCACGACGGCGCGCATCGGCATCTCAGCCCTGCGCTCCTCGGGACTCGCTCATCGTGTCGTACACGTTGCGCATCGGCGTCGGCTACGGATCGGGGTGTGGCGCCGCGCGCTGGCGGTCTCGTTCGACCACCGAGCGCGCGGGCCCATCTCAACAGACGACCTGGGCTACTACCCCGTCACCGCTGCTGCAGCGCGCGGAACGCGCTGTCTCGCGACTCCAGCAGCTTCCGCAGCGCCACCGTGCGCTCCGCGGTGCGCGGCAGCGTGTTCACGATCAACTGGGCGTTCTCGAAGTAGACGCGGCCCACCGCCCGGAGCTGCGGCGGCAGCGTCTCGTACACGAAGAACCCGACGATCGGCTCGACCTGCGTGCCGCCCGCCTGGTCGCCCTGCTGCACGTTGCTCCCGGCCCAGGTGTTCGCCTGGGCGTTGTTGTCGGTTCCGCTGATGATGGTCGCCGGGCTGTCGGTCATGGTGCCTCTCCAATGGGAGTAAGGGTGAGACGGATCGACGCAGGTTCTTTCCGTGTCACGCGCTGCGTCGGGAACGCCCCCCACCGCACGCAGGTTCGGCGGTCGCTCGCGAGGTAGCAGCGTGCGACCAGCCAGTCGATTAGCCACTTGTGACGGCTCACCGCGCCGTCGTCGTCCCCCGCGCCGCCGAGCACCATGGCCGACGTGAGAAGCGCCCGCCGCATCGGCGTCGCCGGCGGGTCGGGCACGCGCCACGGTGCGGGCGGCGCGTGGCCGATCATTGCGAGCGTGTCGAGCTGCTCGAGGTACGTGCGCCGCTCGCGGTCGATCGCGCTCCAGTGCCGCGAGCTGCCATGCGCACGGTTCGCGACGATCGGCGGCACCGGCACGACCAGCTCGAGCGGCGCTGTTACGCCGCTGTTCTCTCGCGCCGCGTGGCCCGCAAACGACGCGGTAACACGAGACGGCGTCTCAGGTTTTCTGAGGTCCGATCGGGCCGCAGCGGGACGTTGGCGCGGCGCGCGGCCCTGTTTCGCGAGCTCGGCACGCGCGCGATCGCGCAGGTGCGCCGGCAGGTCGGAGAGGCGCATCAGGTGCGCGCTCCCGCCACGTCCCCTCCCTCTCTGATAGTCTCTCTTCTTTCTGGGAGACTAGGGACGGTTGGGAGGGTGGAATAGATAAAGTGCGTGCGCGTGCGCGCATGACACAAAATGCCCGGGAGAGCCTCCCAACTGTAGCAACTCCCCCAGACCGTCCCGCCACGCGCAGAGCACCTCACGGCGCCGGCTCCCACCGCGCGGCCGGCGCATCCTGCGATGCTAACCGTACGCCACGACGCCACACAAGGCGCTGGGCGCCGGTGCCGCGGAGCTCCTTGGTGATGCCGCGCTCCTCGAGGCGGCGGCCGAACAGGGTCTGCGACATCACGTACTCGCCGCCGTTCTCCGCCCACTTCTTGTACGACGCGTAGAGACTCGACGCCGCGTCGGCGGCGCCGTCCTCGCGCACGCAGCACTCGGCGATCCACGCGCCTAACACGTCGCTCTCCGCGCGATAGCTCGCGGTCGCGAGCAGCACGCGCTCCGGCGGCTGCAGCCGCCCGCGCCGCCAGGCCAGGCACCCGTCGAGCGCCCACCCCAGGATGCCGGGGAGTTCGCCCTGCAGCTTCGCATCGAGCTCGTGATCCTGCTCCTCGGGCGGGATCGTCACCTCGAACGGCACGAGCCGCACGCGCCGCCAGATGCCGTCGTCGGTCCCGCGCACCACCGGCTTGTGGTTCGCCGCGAGCCACAGCTTGAAGGTCGGCTTGAACTCGAACGCCTCGCTGTACAGGTAGCGCGCGCTCACGACGTCGTCGCCGGTCACGCTCTTGATCAGCCCCTCGGCGAGACGCTGCCCCTCGTTCGCTTCGCTCGCCGTCACCACGCGCGCGCCGAGCAGCCGCGCGACGTCGTTGCGTGGGCCCGAGTCGCGGCCGCGGTCGAGGAACGTCGCGAAGTCGGCCGCCACCGCGGCGTCGCCGACGAGCCACCGCAGCACCTGGAGGAACTTCGACTTCCCGTTCGACCCGGTGCCGTGCATGAGGAACATGCACTGCTCGCGCGTGTGGCCGGTGAGCGAGTAGCCGATCGCGCGCTGCAGAAACCCGATCATGTCCTGGTCGCCGCCCATGATGCGCTCGAGGAACGCGAGCCACGTGGGGCATCGCGCGTCGGCCTCGAGGCGAATGTCGACGAGCTTCGTGATCCGGTCCTCGCGGGCGTGGGGCCGCAGGCGTCCGGTGCGCAGGTCGAGCGTGCCGTTCGCGAGGGTGAGCAGGTCCGGGTCAGCGTCGAAGTCGGTCGGTCGTGCGGGGATGCCCTCCTCGCACTGGGCGCGCTCGATCATCGCGCCGATGCGGCCGTTCGATTCGCTCGCGATCGCGTGCTTCGCGAGCAGCTCCGCCTCGTCGCGGGTCGCCGCGTCGCGCGCCTCCTCGAGGATCGCGCGCACGGTCTCCTTCGCCAGCTGGTGGATGCGCTGCGTGTCGTCGACGGCCCACCGTCGGCCGTCCCAGACGAGCCACCGCTTCCACGCCGGCACGTAGTGGAGGTCGGCCCCGTGCCGCGCGACGAGCCGCTCGGCGTTGCCGAGGTCCGTCGGGTTGAAGGTCGCGACATCCGAGAGGACAGCTACGGCGTTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP007129|41170:50843|42210_42444_-|WP_148306502.1|DBSCAN-SWA
MPNVHTYPLDDVRPHDTEGLTCWCGPAVSQACSACEGEAGADCYRCEGKGWEPCAIPELYDGIVGLHIVHRRVADDP
>NZ_CP007129|41170:50843|47916_48207_-|WP_025413564.1|DBSCAN-SWA
MPMRAVVELRRPLTPAQARVLALLAEAPGYKQIAHALGVSKRTVRQHVEDIAAQLPDDWAPNAGTKDRVVLYAMRRLAESVAPRDRELPVSQDHAA
>NZ_CP007129|41170:50843|47489_47810_-|WP_025413563.1|DBSCAN-SWA
MPENRVTFRRCTPRPLAARPAARRPSRSLTPRERAVAELLVAGYSKREAAALLGICRARVEQLAQAVASRCAWEGPRLGRLARMLEADRAADRALHGSAAPLQLAS
>NZ_CP007129|41170:50843|41170_42214_-|WP_025413556.1|DBSCAN-SWA
MTAPTADQRALARLEALADRLTPDVARAWLRAVRQIRDAATLSAIERAITTGDVEAALEAVFGGPHAVAALNGVGDALRAVLSTGGAAWARDLPPVPSPRPGGAAIRFTFDVLHPAVSATLASYRAEVLRTMTESLREGFRAAIAAGIEAGVNPRETARQVRSLIGLGEHDVQLVASFRRQLETADRTALTRTLRDRRYDGPLRRAAEGGKALTREQIETSVAAYQRRLLAWRAETATRTATLDALRLAQDSVWDQAIADGRVTADRITTTWVTRLDGRERPQHHRMHRRTVRKGEPFRDPATGRVWRRVGEGDYNCRCAAVTRIWPSGELAARAIEDRNARPSPLG
>NZ_CP007129|41170:50843|48655_49249_-|WP_148306505.1|DBSCAN-SWA
MRLSDLPAHLRDRARAELAKQGRAPRQRPAAARSDLRKPETPSRVTASFAGHAARENSGVTAPLELVVPVPPIVANRAHGSSRHWSAIDRERRTYLEQLDTLAMIGHAPPAPWRVPDPPATPMRRALLTSAMVLGGAGDDDGAVSRHKWLIDWLVARCYLASDRRTCVRWGAFPTQRVTRKEPASIRLTLTPIGEAP
>NZ_CP007129|41170:50843|46745_47219_-|WP_158508882.1|terminase|DBSCAN-SWA
MQRRSCRYCHGRGGMYQRTAVELQRDRAKYDLERAAWERKKKRAADAFPAFDEQGGIGYDPRRDPNPKCQRCWGDGVARVLVKDTRRLSPAALRLYAGVKETQHGVDVRMRDQDGALLNVAKHLGMLVERVETRDKTIEDLLDEAERESAGDAGDGE
>NZ_CP007129|41170:50843|43002_44649_-|WP_025413559.1|DBSCAN-SWA
MATTTAAPNGALPADILGSAPPEQRPDYARQELENAREQLGRVRDFVAGTDAVRRAGPTHLPKWEGESSDTYKARTKYSSVYAATGRALIASLGMVFSTPPALVPPQRPKRDDPEGSTEPAPLPDALEALAKDADGMGHDLATVARGVFRDMLTDGLAGLLVDVPPRLDGTVPDASTRVVARLLPYRRDQILNWRIGLAVDPVQGGTRLALTRLVLEERVETNAGAYGVTATRRFRELLLVRTDDPAAGTDAERPLGVRYVLWDRVERPGEAEPVRFVAREAGWVLDGTGRSFGVIPFAVGYGSPHTAPFVADSPLLALADTNADYYRTASDRRWSMALSLAPILVLVGREPGDDGRFPQVAVGPGTSIDVPRNGDVKYVAAPADAMAASQVELERLRVEMATLSLDFLLRRDTAPETATGRAYDAQAGHASLALAALGLQDMLDQGVGFSARFASSAAAPVEALPVRVQTTYDVRQLDAPTLTALNTIRKDGGLTRGTFLKLLASGGVLPESIDLEEEELTLAAQDQAVRDAAAVNGNGDPNAGSEA
>NZ_CP007129|41170:50843|49433_50843_-|WP_025413567.1|DBSCAN-SWA
MNAVAVLSDVATFNPTDLGNAERLVARHGADLHYVPAWKRWLVWDGRRWAVDDTQRIHQLAKETVRAILEEARDAATRDEAELLAKHAIASESNGRIGAMIERAQCEEGIPARPTDFDADPDLLTLANGTLDLRTGRLRPHAREDRITKLVDIRLEADARCPTWLAFLERIMGGDQDMIGFLQRAIGYSLTGHTREQCMFLMHGTGSNGKSKFLQVLRWLVGDAAVAADFATFLDRGRDSGPRNDVARLLGARVVTASEANEGQRLAEGLIKSVTGDDVVSARYLYSEAFEFKPTFKLWLAANHKPVVRGTDDGIWRRVRLVPFEVTIPPEEQDHELDAKLQGELPGILGWALDGCLAWRRGRLQPPERVLLATASYRAESDVLGAWIAECCVREDGAADAASSLYASYKKWAENGGEYVMSQTLFGRRLEERGITKELRGTGAQRLVWRRGVRLASQDAPAARWEPAP
>NZ_CP007129|41170:50843|44667_44862_-|WP_025413560.1|DBSCAN-SWA
MRLLAHRHDGWTGWILVARSHCLSLTRARFTSPRWGITCPRGDEIAGLALYIGRRSMLLAFGRL
>NZ_CP007129|41170:50843|48362_48542_-|WP_104023368.1|DBSCAN-SWA
MVGFFVYETLPPQLRAVGRVYFENAQLIVNTLPRTAERTVALRKLLESRDSAFRALQQR
>NZ_CP007129|41170:50843|47127_47595_-|WP_104023214.1|terminase|DBSCAN-SWA
MGRAPARPPRPDARGGPRGRPRAARLRGSAAAGVVTSDAPALTPKQQRFVEEFIVDLNATQAAIRAGYSARVAANIGYENLQKPQIAAAIREAKAARSLRTQIEADDVLQRWWDLANANPNELVEVAAPLVPLLPRPRRDVPAHRRGAAARSREV
>NZ_CP007129|41170:50843|45184_46765_-|WP_148306503.1|DBSCAN-SWA
MLATASKSAPPARRARAIAFVDRLRVDYAEWARRCYRIRDKHGRILPFVLNDVQRAIGDVEREELTTKGQARIMVLKARQGGVSTDQQGRALHQIWSERGFDALTLAHTKEDTEKLFGITTRAIEHFPPALLPRLGEKGTTEVSFPGRDARLYTGTAGSKRTGRGLTIKRFHGSEFAFWGDPVALLGSVTPALVPQGSIVVLETTASGFDSPAHNFWREAAARGYRAVFYPWWLCDRANYRLPLFAYDELGALTDEEQLLLTAHGLDLEQLKWRRAKIAELTRTLFLQEYAEDPESCWAAVGGMFFDAQQIKALMLAAPEPRSVELNGALQLYDAPTNERVIIGADTAEGTGGDRSTFTARTRTTWKLRATFEDPNITPREFAALLNTWGRRLAVGGTPAFLVVEKNAHGITVLRHLVDDHQYPLAAIYHRVAHDQSQREQSGRIGWATTAESKPLMLDAGRELVTAAVERVAGNPSKAALRDAFAVRRGADGRYDLNGRDMLVSEMLAWLGRSAPVGVWGTGTYR
>NZ_CP007129|41170:50843|42436_43006_-|WP_025413558.1|DBSCAN-SWA
MIALNADAPAAIACADCADQKARLILHRGTGERHRMPCACTATDLPVKFVYQPENSGCVVAAVAMIIGKTYFETKQYFVAHNDFTVEGAHRYQWQEVLDAHGFAWRLRFDYLSRLNGARRESWPCAPWADLHLVEVINTRGSGQHAVVLLRDGRVLDPWWGVLQGLHRYPRVVSMTAVYRVDPPGGAGA
>NZ_CP007129|41170:50843|44864_45167_-|WP_025413561.1|DBSCAN-SWA
MATTHNEAVAETNAALARWVNANVPDATQARELSGLVAQFVAAVVRRERAVADAAHRAADMEEIAQRAAGNPFAFMDSVFGQAARRANVAHGARTDQTAL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025413556.1|41170_42214_-	hypothetical protein	W8VT12	Pseudomonas_phage	6.0e-22	29.1
WP_148306502.1|42210_42444_-	hypothetical protein	NA	NA	NA	NA
WP_025413558.1|42436_43006_-	hypothetical protein	NA	NA	NA	NA
WP_025413559.1|43002_44649_-	DUF4055 domain-containing protein	A0A2D2W2J8	Stenotrophomonas_phage	2.5e-22	26.4
WP_025413560.1|44667_44862_-	hypothetical protein	NA	NA	NA	NA
WP_025413561.1|44864_45167_-	hypothetical protein	NA	NA	NA	NA
WP_148306503.1|45184_46765_-	hypothetical protein	A0A0F7L2R8	uncultured_marine_virus	1.7e-20	28.6
WP_158508882.1|46745_47219_-|terminase	terminase small subunit	I6NV32	Burkholderia_virus	3.8e-24	42.0
WP_104023214.1|47127_47595_-|terminase	terminase small subunit	A0A0M3LS14	Mannheimia_phage	5.8e-17	69.1
WP_025413563.1|47489_47810_-	hypothetical protein	NA	NA	NA	NA
WP_025413564.1|47916_48207_-	hypothetical protein	NA	NA	NA	NA
WP_104023368.1|48362_48542_-	hypothetical protein	NA	NA	NA	NA
WP_148306505.1|48655_49249_-	hypothetical protein	NA	NA	NA	NA
WP_025413567.1|49433_50843_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	1.7e-96	41.6