CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004117	Burkholderia thailandensis E444 chromosome 1, complete sequence	1 crisprs	csa3,DinG,DEDDh,WYL,cas3,RT,PrimPol	0	0	9	0
NZ_CP004118	Burkholderia thailandensis E444 chromosome 2, complete sequence	1 crisprs	csa3,DinG,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004117_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004117_1

576098-576196

Orphan

Consensus_repeat	Method
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004117_1

>merge|NZ_CP004117|1|576098-576196|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATGCGGCGGTCAATGCGGTGGCGAAGCGGGGGGGCGATGCGGAGGAGCGAAGCGCGTGCGCGGCGGCGCGCATG

>NZ_CP004117|1|1|576098-576196|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CGGCGGTCAATGCGGTGGCGAAGCGGGGGGGCGATGCGGAGGA
GCGAAGCGCGTGCGCGGCGGCGCGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004117.1\|WP_009890512.1\|573704_574043_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004117.1\|WP_127462262.1\|579082_579724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004117.1\|WP_009890507.1\|570081_571035_+\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NZ_CP004117.1\|WP_025369320.1\|569072_569936_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NZ_CP004117.1\|WP_009890520.1\|576495_577908_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP004117.1\|WP_009890525.1\|581165_581609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004117.1\|WP_009890516.1\|574258_575461_-\|urate-hydroxylase-PuuD	unknown	unknown	gnl\|CDD\|368779
NZ_CP004117.1\|WP_009890502.1\|566720_567416_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP004117.1\|WP_009890503.1\|567529_569062_+\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404
NZ_CP004117.1\|WP_009890518.1\|575510_575864_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NZ_CP004117.1\|WP_004521233.1\|583913_584594_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP004117.1\|WP_009890522.1\|579778_579988_-\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NZ_CP004117.1\|WP_004192898.1\|581979_582411_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP004117.1\|WP_009890510.1\|572805_573318_+\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
NZ_CP004117.1\|WP_009909169.1\|571795_572809_+\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NZ_CP004117.1\|WP_011402255.1\|585110_587633_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP004117.1\|WP_009890521.1\|578097_579027_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP004117.1\|WP_009890543.1\|582594_583800_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP004117.1\|WP_038712608.1\|580076_581015_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP004117.1\|WP_038707963.1\|571034_571556_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|225736

Protein	Function_ID	Function_description	E-value
NZ_CP004117.1\|WP_004192898.1\|581979_582411_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	2.50619e-80
NZ_CP004117.1\|WP_009890507.1\|570081_571035_+\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NZ_CP004117.1\|WP_025369320.1\|569072_569936_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	9.19698e-81
NZ_CP004117.1\|WP_009890520.1\|576495_577908_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP004117.1\|WP_009890518.1\|575510_575864_-\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	3.76465e-65
NZ_CP004117.1\|WP_009890516.1\|574258_575461_-\|urate-hydroxylase-PuuD	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
NZ_CP004117.1\|WP_009890502.1\|566720_567416_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.67953e-47
NZ_CP004117.1\|WP_009890503.1\|567529_569062_+\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_CP004117.1\|WP_009890521.1\|578097_579027_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40332e-127
NZ_CP004117.1\|WP_009890522.1\|579778_579988_-\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01699e-32
NZ_CP004117.1\|WP_009890510.1\|572805_573318_+\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	4.0966e-102
NZ_CP004117.1\|WP_009909169.1\|571795_572809_+\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
NZ_CP004117.1\|WP_011402255.1\|585110_587633_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP004117.1\|WP_004521233.1\|583913_584594_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	5.00746e-22
NZ_CP004117.1\|WP_009890543.1\|582594_583800_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.23436e-06
NZ_CP004117.1\|WP_038712608.1\|580076_581015_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	4.30917e-79
NZ_CP004117.1\|WP_038707963.1\|571034_571556_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|225736	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown].	3.08249e-76

>NZ_CP004117.1|WP_009890518.1|575510_575864_-|hydroxyisourate-hydrolase
MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGTYELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS
>NZ_CP004117.1|WP_009890516.1|574258_575461_-|urate-hydroxylase-PuuD
MEGFIIDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPKDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRMLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAMLSNHYAMTYTNQYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPKPIAPEAQAANAPNVPKLAIKDVAPILQQRCVACHSAKPTLVGSAPAGVMFDTSDEIARNAPRIYQQAVQLKAMPIGNLTHMTDDERTKIAAWFESGATK
>NZ_CP004117.1|WP_009890512.1|573704_574043_+|hypothetical-protein
MVIVGCIYLLVFAPLVYVLFLLHGMTIRLGGACLGIAAWVALSIAAIGIVRGWAWSRHWLIGGLIGLWIVSSNAGANGGDVAARGLDYICVALPLFTRRSTAFFRSRRDIEA
>NZ_CP004117.1|WP_009890510.1|572805_573318_+|ureidoglycolate-lyase
MNTLAIEPLTRAAFAPFGDVIETAGAKQIPINLGTTVRFHDLARIDVADEGGRPLVNLFRGQPRTLPFEVTMLERHPLGSQAFIPLTDRPYIVVVAPAGVLDPPKIRAFVTSGWQGVNYAKGVWHHPLIALGGVSDFIVVDRGGGGGNLDEQDLAGSLWLTEDALLAVSA
>NZ_CP004117.1|WP_009909169.1|571795_572809_+|allantoicase
MALPLSDPNAPEFTRRYVNLADPRLGAQALEASDDFFAPKERMLSPEPAVFIPGKYDDHGKWMDGWETRRKRTTGYDWCIVKLARPGVIKGFDIDTSHFTGNFPPAASIEAAHVPDGVPNEATKWVEVVPSTTLQGNSHHYVEARDANAYTHLRVNIYPDGGIARLRVYGQPQLDWAGASRSELFDLAAMDNGGYVVAANNQHFGLASNMLLPGRGVNMGDGWETRRRREPGNDWAIVALAQPGVIRKIEVDTAHFKGNFPDRCSVQAAYVTGGTDSSLVTQAMFWPVLLGEQKLQMDKQHVFEAELAALGPVTHVRLNIIPDGGVSRLRVWGTLDK
>NZ_CP004117.1|WP_038707963.1|571034_571556_+|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MKAMRYTLEQLNAMSTEAFVAALSGIFEHSPWVAEAAAAARPFSSIDALHRTMRDAVDAAGDARQLALINAHPELAGKAAVRGELTAESTREQSGAGLDRCTQEEFDKLQRLNRAYREKFGFPFILAVRGYDRHGIIENFEARIDHTQDEELRASLGQIYRIARFRLDDLIDA
>NZ_CP004117.1|WP_009890507.1|570081_571035_+|allantoinase-PuuE
MAFDPNYPRDLVGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSRAGVWRILREFDKRGLPLTVFGVGMAIERHPELARAFVEFGHEIACHGWRWIHYQDMTPEREAEHMKLGMEAIERVTGVRPLGWYTGRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVPGGARAPQLIVPYTLDANDMRFATPQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVARRVDIARHWREHHPYRPHARREGDA
>NZ_CP004117.1|WP_025369320.1|569072_569936_+|aspartate/glutamate-racemase-family-protein
MKIKLINPNTTQRMTDAMGRCAREVAAAGTAIVAVSPAMGPPSIEGHYDEALATPGLLAEVAAGERDGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLARTCGMAWHLAERYGMKRFCRNVRATDVAVLDLDRPGSAARRVIVDECRRALDEDGADAIVLGCAGMAEFAHEIEAAIGAPVVEGVTAAVKWAEALIALKLATAKRGDFARPLAKRYDGEFARFSPDGAFALGAEAAAGAAVGPDAAAPGAAIQDARSPDAFAQPHIHSV
>NZ_CP004117.1|WP_009890503.1|567529_569062_+|NCS1-family-nucleobase:cation-symporter-1
MTIARLVRGRQGDVMAQFSVAQQSASYRPNEGRPGDPDGGAAMPAGYSKRLYNEDLAPLANQNWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLAALIVGISIVNVLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWMPYADVHRYGFLGLSALGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFVLAGYMVWRAGWRNIGLDLGGVKYHGAEVLPVMVTAISLVVSYFSGPMLNFGDFSRYCRSYGSVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGQLITDPVETVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLVKRGALRRDDLYTTSADGAYWYRDGVNRRAVAALLPAAAIAVACVMVPAPSGLANFSWFIGAALGGAFYRALAKA
>NZ_CP004117.1|WP_009890502.1|566720_567416_+|GntR-family-transcriptional-regulator
MTKKDSALTGASPESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAATIDKERHAFERRDFPAWIRLSGEFHTELAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELRMLDRPAQGAVDLREVFGHSG
>NZ_CP004117.1|WP_009890520.1|576495_577908_+|8-oxoguanine-deaminase
MERYSSARAGAQSQSPNRPRTLVVKHADVLVTMDGARRELRDAGLYVEDNRIVAVGPSAELPAQADEVLDLRGHLVIPGLVNTHHHMYQSLTRAIPAAQNAELFGWLTNLYRIWAHLTPEMIEVSALTAMAELLLSGCTTSSDHLYIYPNGSRLDDSVAAAQRIGMRFHASRGSMSVGQRDGGLPPDSVVEREPDILRDTQRVIETYHDEGRYAMLRVVVAPCSPFSVSRGLMRDAAALAREHRVSLHTHLAENANDVAYSRETFGMTPAEYAEDLGWVGRDVWHAHCVQLDESGIALFARTGTGVAHCPCSNMRLASGIAPVARMRVAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTARDALEIATLGGARVLNRDDIGALAPGMAADFVAFDLRTPQFAGALHDPVAALVFCAPSQAAYSVVNGRVVVREGRLTAFEIEPLVERHNALAKALCEAAR
>NZ_CP004117.1|WP_009890521.1|578097_579027_-|LysR-family-transcriptional-regulator
MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKSGMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVERFRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDEIVCLMSNAHPFAKRGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLAPYVLVKSDLIFTTTRLFADHYAKFLPLSVVPAPLDFPPMQYYQLWHERCHYSDEVRWLRGLVAEATRTLIDA
>NZ_CP004117.1|WP_127462262.1|579082_579724_-|hypothetical-protein
MERSFAREATVAPRHTRNACRILPLPRCGIRRNRHASRRTSRVSGERSSCPHDDLRRTARRRSFTAFRTAGPLAEIDAESATPSRATHNDNIAPTRIDTRDAPVRRADVRGRRVTGLASFARRRIDLFSSLVSPSSLAIHFLPPFLPPLFRTPFRIPFCAPFRHPFRDPHRRAFARLHRKLVTRRPRRSPVANRPRRARRLECAALDAPLCPY
>NZ_CP004117.1|WP_009890522.1|579778_579988_-|dodecin-domain-containing-protein
MNDHVYKLLELTGSSRQSSDDAIRNAISKAAKTMRNLHWFEVTDMRGHIEGDQVIHWQVTLKVGLRIED
>NZ_CP004117.1|WP_038712608.1|580076_581015_+|NAD(P)-dependent-oxidoreductase
MMGGNFNRYSNERKGEDVDVGFCGPGLMGAPMIRHLLSAGHRVHVWNRTRAKADALAAHGAQVVDTPAELAARAQTVMLCVLDAQAVGDVVFGASGVLAGDAAVRCVTRIVDHSSIPPAATRAYAARAAALGASWVDAPVSGGVPGAEAGTLAVMAGGAQADVDAVRGLIGAYASRVTHLGDAGAGQTAKLCNQAIVTASVTAIAEAVGLAQASGIDAARLAEALAGGWADSVLLQTFVPRMTSTGHPPIGALKTFQKDVDAIADAARDAGAVMPVAATVQQVLRLGAAMGLAQADFAAFIDIVRPQAKRGE
>NZ_CP004117.1|WP_009890525.1|581165_581609_-|hypothetical-protein
MSFPKKRRRAQPDGQESFLAVLRHAKPFAQLDTKIARARAQDEPVLYAHVLPGLDVLLCSVRGAQPPYPAIVELRKRCIESIANALEQPLDGLENGGYWYEANGFGFLVFASRARARILPEFGAGVKAGLRSGIGQPNAGDTTPRSL
>NZ_CP004117.1|WP_004192898.1|581979_582411_-|large-conductance-mechanosensitive-channel-protein-MscL
MSIIKEFKEFAVKGNVMDLAIGVIIGGAFSKIVDSVVKDLIMPVIGVLTGGLDFSNKFVLLGQIPASFKGNPESFKDLQAAGVATFGYGSFITVLINFIILAFIIFLMVKFINKLRKPEEAAPAATPEDVLLLREIRDSLKQR
>NZ_CP004117.1|WP_009890543.1|582594_583800_-|tetratricopeptide-repeat-protein
MKKLLAAVGLSLILVSAAANAAVPSLQQIQQSIAQGNWQRADAQLSQVIDAYPDNARARYLYGQVLDREGRPAEALAQIERAKSLDPQLRFTDPSRFAQTEARVRADARRATSAQSSRSATSGGMLVAPQTQGQAQSQFAAAPAAPAHRGPSAGMWIGFAVLIGAIVLVLRRTLRRARSADDQRAGDERRAQLKRATDVLNDVRPLKLDARLSTAPGAGALNGEIEALEAQARELVETLSNGQNPVPPYRLDELEKQFASLKARVEGRPDPGAASAAANAPGQTGSVFAQEADRLTGAQGQPPYSPYPPQPQQQPPVVIQQGGGFGGGMGGLLTGVLLGQAMSNGRDRVIEREVIVDDEARRRAGADPGIDFGQGDSWDSGGSDGGGIDLGSSGDDWSNNG
>NZ_CP004117.1|WP_004521233.1|583913_584594_-|PspA/IM30-family-protein
MSLFDSISRTIKGLLNDAADSVQDPSRDARQIVRELDDSIGRAENSLIEIEAQVATQRSKRDTADERAKKYEDGAKRALQSGDEALAREALAAQANAEAERDALARELDTLEPSVDKLKGQIADMRARRNDLNARSNILQAKQEIAQAKDVAATALGGIGGKNLSEDFQKLEDKVALSNARSDARLNSADTNSGRALDDKLAALNKGPSVEDRLEALKKQLNTPAQ
>NZ_CP004117.1|WP_011402255.1|585110_587633_+|penicillin-binding-protein-1A
MPIIKRPPSSRATNEHHYSLRRSPAGAYYTDDDDGDDHASRRTNRDGGSRTFGSRVALWFVGLFATLLVVGALIVGYALVVMGPQLPSLDALTNYQPKVPLRVYSADHVLLGEFGEERRSLVRFADIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVADLLHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKDLKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILKRMLEIGYITQQQYDQAVKEEIHVRTPGNQYAVHGEYVAEMVRQMMYAQYKDETYTRGLTVTTTINAADQEAAYQAVRRGIMDYERRHGYRGPEGFVALPPAGDGRDEAIDDALADHPDNGDLQSAVVLAASPAALDVQFVGGATATINAAGLRFAAGALSSRASAALKIKPGSIVRVMKDAKGAWQIVQLPQVEGALVAVAPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSASLEKGLGPATIINDAPLYFPPSVPGGQPWEPKDDDQPDGPMSMRTALQRSKNLVSIRILASIGTSYAQDYVTKRFGFDPAKTPPYLPMALGAGLVTPLQLAAGYAVFANGGYKVDPYLIAEVDDARGQALQKAQPVVAGASATRTIDARNAYVMNSLLHTVATAGTGAGTNALGRGDLQGKTGTTNDAKDGWFAGYQQSLVAVAWMGFDQPRSLGSREFGAQLALPIWVNYMRTALSGVPEQQMAMPDGLTTIDGELYYADRTPGAGFIANVDFNPAASPTVSANDALGSAGAAGLTPPPVTPEEKRQIIDMFEGNKP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46161 : 54809

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009908912.1\|46161_47562_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7
WP_080511617.1\|47593_48517_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
WP_009889856.1\|48574_49567_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009889858.1\|49638_49956_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_009904404.1\|50290_51193_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_009889862.1\|51287_52529_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009889864.1\|52707_53631_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_025369235.1\|53966_54809_-	alpha/beta hydrolase	A7K906	Acanthocystis_turfacea_chlorella_virus	3.8e-11	24.6

DBSCAN-SWA_2

324463 : 419454

103

uncultured_Caudovirales_phage(23.91%)

integrase,lysis,capsid,portal,tRNA,tail,head,protease,terminase,plate

attL 343925:343944|attR 427585:427604

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009890173.1\|324463_325990_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.3e-85	36.2
WP_080554852.1\|326062_327091_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.0e-06	37.1
WP_009909025.1\|327394_329089_-	single-stranded-DNA-specific exonuclease RecJ	A0A0K2FM92	Brevibacillus_phage	1.4e-28	27.5
WP_025369276.1\|329104_330190_-	hypothetical protein	NA	NA	NA	NA
WP_009890181.1\|330543_331797_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_011402197.1\|331789_332539_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	4.9e-34	38.4
WP_009890183.1\|332543_333332_+	TatD family hydrolase	NA	NA	NA	NA
WP_009909028.1\|333385_335923_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_009890187.1\|335959_336787_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_009890189.1\|337029_338691_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.4e-150	52.0
WP_009890191.1\|338687_339542_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.0e-48	41.3
WP_009890193.1\|339646_340930_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	9.3e-150	62.1
WP_009890195.1\|341021_341453_+	cell division protein FtsB	NA	NA	NA	NA
WP_009904688.1\|341614_341959_-	hypothetical protein	NA	NA	NA	NA
WP_009904690.1\|342047_342998_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_009890200.1\|343036_343561_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_009890202.1\|343739_344558_+	ferritin-like domain-containing protein	NA	NA	NA	NA
343925:343944	attL	NA	NA	NA	NA
WP_009909029.1\|344844_345735_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009904694.1\|345945_346776_+	PHP domain-containing protein	NA	NA	NA	NA
WP_009890207.1\|346839_347469_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_009890209.1\|347567_348233_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_009890211.1\|348241_349444_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_025369277.1\|349440_350058_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025369278.1\|350102_351005_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_009890216.1\|351115_352258_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_009890218.1\|352264_353041_+	MBL fold metallo-hydrolase	U5PVD0	Bacillus_phage	1.9e-09	26.6
WP_025369279.1\|353707_354895_-	cupin	NA	NA	NA	NA
WP_009890223.1\|354963_355509_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_009890224.1\|355488_356787_-	hypothetical protein	NA	NA	NA	NA
WP_009890225.1\|356773_359455_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.2e-28	24.0
WP_004547867.1\|359614_360916_+\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	2.3e-148	58.9
WP_009890227.1\|360866_361109_-	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
WP_009890228.1\|361117_361591_-	hypothetical protein	B5TA88	Burkholderia_phage	3.0e-05	71.4
WP_004531944.1\|361599_361929_-	hypothetical protein	NA	NA	NA	NA
WP_025369281.1\|362042_363359_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_025369282.1\|363358_363808_-	hypothetical protein	NA	NA	NA	NA
WP_025369283.1\|363804_364410_-	hypothetical protein	NA	NA	NA	NA
WP_004534202.1\|364406_364742_-	hypothetical protein	NA	NA	NA	NA
WP_128972336.1\|364793_364982_-	NlpBDapX lipoprotein	NA	NA	NA	NA
WP_004555253.1\|365116_365605_-	hypothetical protein	NA	NA	NA	NA
WP_004555254.1\|365558_366059_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024430958.1\|366175_366385_+	hypothetical protein	NA	NA	NA	NA
WP_009944042.1\|366471_367002_+	hypothetical protein	C7BGG0	Burkholderia_phage	4.4e-29	46.8
WP_004555255.1\|367015_367348_+	hypothetical protein	NA	NA	NA	NA
WP_143293908.1\|367375_367891_-	hypothetical protein	NA	NA	NA	NA
WP_024430957.1\|368054_368513_+	hypothetical protein	NA	NA	NA	NA
WP_009909046.1\|368886_369357_+	hypothetical protein	NA	NA	NA	NA
WP_025369284.1\|369478_371971_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	3.6e-97	41.8
WP_025369285.1\|372188_372776_+	hypothetical protein	NA	NA	NA	NA
WP_004538506.1\|373156_374005_+	DUF4747 family protein	NA	NA	NA	NA
WP_144241902.1\|374173_374605_+	hypothetical protein	NA	NA	NA	NA
WP_004547883.1\|374756_375326_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_025369286.1\|375288_377274_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.7e-180	53.4
WP_004533700.1\|377284_377491_+	hypothetical protein	NA	NA	NA	NA
WP_025369287.1\|377487_378981_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	7.5e-135	51.2
WP_004547849.1\|378977_380072_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.3e-48	36.2
WP_004533707.1\|380098_380443_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	3.0e-15	49.5
WP_004550216.1\|380477_381503_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-109	59.1
WP_004539695.1\|381506_381797_+	hypothetical protein	NA	NA	NA	NA
WP_014917510.1\|381798_382329_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.0
WP_004533675.1\|382318_382852_+	hypothetical protein	Q9JML9	Wolbachia_phage	6.2e-23	39.5
WP_004533661.1\|382854_383535_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-18	34.4
WP_025369288.1\|383599_383806_+	hypothetical protein	NA	NA	NA	NA
WP_004533690.1\|383802_384147_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_009964528.1\|384143_385037_+\|plate	baseplate J/gp47 family protein	A0A1J0I2M3	Salmonella_phage	8.4e-49	40.1
WP_025369289.1\|385029_385605_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.0e-32	43.2
WP_038712562.1\|385592_387056_+	hypothetical protein	A4JWL8	Burkholderia_virus	8.0e-214	78.0
WP_025369292.1\|387071_387524_+\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	7.0e-44	76.8
WP_025369293.1\|387589_388759_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	3.7e-161	73.2
WP_009964536.1\|388769_389273_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.0
WP_004552769.1\|389342_389645_+\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
WP_025369294.1\|389732_392144_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.2e-62	35.5
WP_025369295.1\|392152_393034_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-30	37.4
WP_004540041.1\|393008_393215_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.0e-15	61.2
WP_025369296.1\|393224_394277_+	phage late control D protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.0e-79	44.8
WP_004533694.1\|394352_394547_+	hypothetical protein	NA	NA	NA	NA
WP_025369297.1\|394539_395082_+	lysozyme	A4JX20	Burkholderia_virus	9.8e-85	90.6
WP_038712566.1\|395081_395627_+\|lysis	lysis protein	Q8W6S5	Burkholderia_virus	1.0e-81	95.0
WP_025369299.1\|395770_396559_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.8e-151	96.9
WP_004539736.1\|396599_397310_-	immunity 52 family protein	A4PE26	Ralstonia_virus	1.4e-38	41.5
WP_171462683.1\|397321_397990_-	hypothetical protein	NA	NA	NA	NA
WP_025369301.1\|398274_398781_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.5e-18	39.4
WP_025369302.1\|398777_399203_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.4e-14	46.0
WP_025369303.1\|399264_399546_-	hypothetical protein	NA	NA	NA	NA
WP_009890265.1\|399545_400010_-	hypothetical protein	C7BGE3	Burkholderia_phage	9.7e-49	60.4
WP_024430645.1\|400091_400661_+	SOS response-associated peptidase family protein	A4JX27	Burkholderia_virus	2.0e-88	82.3
WP_144399193.1\|400958_401429_+	hypothetical protein	NA	NA	NA	NA
WP_025369304.1\|401781_402243_+	excisionase family DNA-binding protein	K4ICM4	Acidithiobacillus_phage	8.4e-45	62.1
WP_024430643.1\|402517_403144_+	hypothetical protein	NA	NA	NA	NA
WP_143292436.1\|403225_403528_+	hypothetical protein	NA	NA	NA	NA
WP_024430642.1\|404006_405146_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024430641.1\|405142_405976_+	hypothetical protein	NA	NA	NA	NA
WP_009910405.1\|407599_407872_+	hypothetical protein	NA	NA	NA	NA
WP_009890278.1\|408136_408940_-	inositol monophosphatase	NA	NA	NA	NA
WP_009890280.1\|410363_411146_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_009890284.1\|411488_412289_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_009890286.1\|412312_412804_-	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	8.2e-06	29.8
WP_009890287.1\|412884_413460_-	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	2.4e-12	40.0
WP_025369305.1\|413515_414238_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_009890291.1\|414468_415866_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.4e-42	33.8
WP_009890293.1\|415913_416852_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_009890295.1\|416954_417926_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_011402215.1\|417969_419454_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
427585:427604	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1225919 : 1299018

Stx2-converting_phage(23.08%)

transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891643.1\|1225919_1228787_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	6.7e-148	39.3
WP_009891646.1\|1228873_1229758_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-69	48.3
WP_009891648.1\|1229834_1230440_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_009891650.1\|1230529_1232923_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_009891653.1\|1232933_1234298_-	FecR domain-containing protein	NA	NA	NA	NA
WP_004193573.1\|1234294_1234999_-	response regulator transcription factor	NA	NA	NA	NA
WP_009891660.1\|1235289_1235676_-	hypothetical protein	NA	NA	NA	NA
WP_004193727.1\|1235934_1236165_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_009891663.1\|1236324_1237362_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_025369419.1\|1237374_1238394_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_009891665.1\|1238386_1239268_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_009891666.1\|1239513_1240563_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009891668.1\|1240663_1241809_+	ABC transporter permease	NA	NA	NA	NA
WP_009891669.1\|1241821_1242622_+	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.8e-11	26.2
WP_011402440.1\|1242635_1244636_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_043037268.1\|1244646_1246650_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_009891675.1\|1246646_1247567_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_025369421.1\|1247566_1248370_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_009891678.1\|1248434_1249139_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-09	31.8
WP_009891679.1\|1249135_1251361_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A2R8FFL6	Cedratvirus	1.6e-08	27.9
WP_009891680.1\|1251353_1252289_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_009909721.1\|1252293_1252743_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_009891683.1\|1252966_1254115_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_009891685.1\|1254304_1254640_+	YbjQ family protein	NA	NA	NA	NA
WP_009891687.1\|1254732_1255287_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_011402443.1\|1255749_1257258_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-10	25.2
WP_025369422.1\|1257809_1259312_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_009891696.1\|1259456_1260422_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009891699.1\|1260860_1263485_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.1e-80	39.2
WP_009891700.1\|1263926_1265147_+	CoA transferase	NA	NA	NA	NA
WP_009909736.1\|1265236_1266043_+	hypothetical protein	NA	NA	NA	NA
WP_009891704.1\|1266573_1266816_-	ornithine acetyltransferase	NA	NA	NA	NA
WP_009891706.1\|1267063_1268773_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.8e-186	56.9
WP_009891707.1\|1269067_1269544_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	2.0e-20	41.3
WP_009891709.1\|1269562_1269949_-	hypothetical protein	NA	NA	NA	NA
WP_025369423.1\|1270235_1272335_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_009891712.1\|1272436_1273297_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_009891714.1\|1273342_1274734_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_025369424.1\|1274967_1276551_+	acid phosphatase	NA	NA	NA	NA
WP_009891718.1\|1276775_1277969_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_025369425.1\|1277986_1278829_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_154660009.1\|1279073_1279316_+	hypothetical protein	NA	NA	NA	NA
WP_009891722.1\|1279526_1280159_-	response regulator transcription factor	NA	NA	NA	NA
WP_025369426.1\|1280159_1282232_-	response regulator	A0A1V0SGR3	Hokovirus	5.0e-12	25.9
WP_009891727.1\|1282642_1283608_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025369427.1\|1283623_1286035_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009909750.1\|1286079_1286919_-	molecular chaperone	NA	NA	NA	NA
WP_009891731.1\|1286936_1287461_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891732.1\|1287543_1288104_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025369429.1\|1288156_1288702_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891734.1\|1289504_1290398_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011402450.1\|1290813_1292103_+	MFS transporter	NA	NA	NA	NA
WP_009891736.1\|1292147_1293074_+	amidohydrolase family protein	NA	NA	NA	NA
WP_009891740.1\|1293559_1293841_+	H-NS histone family protein	NA	NA	NA	NA
WP_009891742.1\|1294040_1294304_-	hypothetical protein	NA	NA	NA	NA
WP_009891744.1\|1295053_1296367_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_009889500.1\|1296665_1298237_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|1298266_1298614_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009888727.1\|1298610_1299018_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2

DBSCAN-SWA_4

1896863 : 1907745

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009892610.1\|1896863_1899164_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9
WP_009892611.1\|1899160_1899475_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_004196460.1\|1900005_1900209_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892613.1\|1900320_1901916_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_009892614.1\|1902077_1903337_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_009892615.1\|1903601_1904180_+	pseudouridine synthase	NA	NA	NA	NA
WP_080511442.1\|1904440_1904656_+	hypothetical protein	NA	NA	NA	NA
WP_011401863.1\|1904851_1905367_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
WP_009892620.1\|1905630_1907745_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8

DBSCAN-SWA_5

2051855 : 2092516

Burkholderia_virus(27.27%)

integrase,transposase,plate

attL 2063341:2063358|attR 2102767:2102784

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025369564.1\|2051855_2053214_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_126877593.1\|2053271_2053814_+	hypothetical protein	NA	NA	NA	NA
WP_080713218.1\|2053810_2054677_+	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_025369567.1\|2054863_2055403_+	PAAR domain-containing protein	A4JX23	Burkholderia_virus	1.3e-49	60.1
WP_025369568.1\|2055399_2056134_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	6.3e-111	79.5
WP_025369569.1\|2056161_2057244_+	DUF3396 domain-containing protein	Q8W6S0	Burkholderia_virus	1.4e-159	76.3
WP_025369570.1\|2057410_2057869_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144241913.1\|2059160_2059874_+	hypothetical protein	NA	NA	NA	NA
WP_025369573.1\|2059909_2060290_+	hypothetical protein	NA	NA	NA	NA
WP_144241914.1\|2060585_2061425_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_120514916.1\|2061930_2063907_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
2063341:2063358	attL	NA	NA	NA	NA
WP_144241915.1\|2064097_2064754_+	hypothetical protein	NA	NA	NA	NA
WP_025369578.1\|2064863_2065937_-\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	2.5e-07	23.2
WP_144241916.1\|2065935_2066193_+	hypothetical protein	NA	NA	NA	NA
WP_144314122.1\|2066535_2066964_+	hypothetical protein	NA	NA	NA	NA
WP_025369580.1\|2066991_2070027_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_025369581.1\|2070165_2070777_+	hypothetical protein	NA	NA	NA	NA
WP_009889500.1\|2070793_2072365_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|2072394_2072742_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009888727.1\|2072738_2073146_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_155719072.1\|2073285_2073447_+	hypothetical protein	NA	NA	NA	NA
WP_144241917.1\|2074292_2074613_-	hypothetical protein	NA	NA	NA	NA
WP_038713188.1\|2074645_2074897_-	hypothetical protein	NA	NA	NA	NA
WP_025369584.1\|2075111_2075600_-	SocA family protein	A0A0N9SGM1	Paenibacillus_phage	3.3e-23	39.5
WP_025369585.1\|2075693_2076395_-	Eco29kI family restriction endonuclease	NA	NA	NA	NA
WP_025369586.1\|2076391_2077615_-	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.2e-26	28.6
WP_025369587.1\|2077601_2078033_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	3.9e-36	51.6
WP_144241918.1\|2078512_2079067_-	hypothetical protein	NA	NA	NA	NA
WP_009892808.1\|2079313_2081377_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_009892809.1\|2081327_2081645_-	hypothetical protein	NA	NA	NA	NA
WP_011401823.1\|2081668_2082235_-	sel1 repeat family protein	NA	NA	NA	NA
WP_080713221.1\|2082267_2082669_-	hypothetical protein	NA	NA	NA	NA
WP_009908505.1\|2082739_2083615_+	response regulator	NA	NA	NA	NA
WP_009908504.1\|2083639_2084140_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_011401822.1\|2084136_2085945_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.0e-29	24.1
WP_009892817.1\|2086061_2087036_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144314123.1\|2087107_2087308_-	hypothetical protein	NA	NA	NA	NA
WP_025369590.1\|2087304_2089698_-	penicillin acylase family protein	NA	NA	NA	NA
WP_025369591.1\|2090701_2092516_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
2102767:2102784	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2842050 : 2849794

Pseudomonas_phage(28.57%)

integrase

attL 2843222:2843273|attR 2854009:2854060

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009910245.1\|2842050_2843079_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.2e-46	41.3
2843222:2843273	attL	NA	NA	NA	NA
WP_144314124.1\|2843349_2844633_-	hypothetical protein	K7PHS1	Enterobacteria_phage	2.5e-78	39.2
WP_025369693.1\|2844625_2844958_-	transcriptional regulator	A0A088CD40	Shigella_phage	2.9e-15	48.5
WP_025369694.1\|2844950_2845283_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	5.2e-20	54.9
WP_025369695.1\|2845323_2845911_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.8e-44	49.4
WP_025369696.1\|2846258_2847038_-	hypothetical protein	A0A1W5LU59	Ralstonia_phage	1.9e-33	40.5
WP_025369697.1\|2847503_2848892_-	hypothetical protein	NA	NA	NA	NA
WP_009910232.1\|2848888_2849794_-	hypothetical protein	Q6UAZ2	Ralstonia_phage	4.9e-28	36.1
2854009:2854060	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3103746 : 3154704

uncultured_Mediterranean_phage(33.33%)

transposase,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009888488.1\|3103746_3104460_+\|transposase	transposase	NA	NA	NA	NA
WP_009888489.1\|3104750_3109454_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_009888490.1\|3109548_3111015_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_009888491.1\|3111294_3112806_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_025369749.1\|3112802_3113381_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_009888495.1\|3113537_3113732_-	hypothetical protein	NA	NA	NA	NA
WP_009888497.1\|3113728_3115495_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_009888499.1\|3116124_3117258_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_009888501.1\|3117312_3117510_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_009888503.1\|3117562_3118378_+	thiazole synthase	NA	NA	NA	NA
WP_009888505.1\|3118374_3119469_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_009888506.1\|3119568_3120387_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-20	29.4
WP_004199929.1\|3120383_3121151_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_009888512.1\|3121163_3121694_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_009888514.1\|3121741_3122677_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_009888516.1\|3122791_3123424_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009888518.1\|3123420_3123690_+	STAS domain-containing protein	NA	NA	NA	NA
WP_009888520.1\|3124004_3124931_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-21	29.7
WP_009888522.1\|3124927_3125683_+	ABC transporter permease	NA	NA	NA	NA
WP_004199917.1\|3125778_3126018_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_009888526.1\|3126031_3127381_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_009888527.1\|3127377_3128034_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_009888528.1\|3128073_3129411_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_009909979.1\|3129565_3130636_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.9e-15	26.7
WP_009888530.1\|3130698_3131286_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_004199909.1\|3131341_3131962_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_009888535.1\|3131958_3132600_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_009888536.1\|3132767_3133523_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_009888537.1\|3133605_3134379_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_009888538.1\|3134378_3134792_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_009888539.1\|3134788_3135157_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_009888541.1\|3135209_3135599_+	membrane protein	NA	NA	NA	NA
WP_009888543.1\|3135627_3135993_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_009888545.1\|3136081_3136315_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_009909978.1\|3136341_3136869_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_009888550.1\|3136907_3137690_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-25	29.3
WP_009888560.1\|3138084_3139290_-	Do family serine endopeptidase	A0A1B1IRD3	uncultured_Mediterranean_phage	6.5e-12	31.9
WP_009888562.1\|3139311_3140058_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_009888563.1\|3140278_3140899_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_009888565.1\|3140899_3142282_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_009888567.1\|3142304_3143063_+	cytochrome c1	NA	NA	NA	NA
WP_004185176.1\|3143155_3143767_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_009909975.1\|3143836_3144349_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	52.5
WP_158338514.1\|3144930_3145059_-\|transposase	transposase	NA	NA	NA	NA
WP_009888580.1\|3145692_3146478_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009888581.1\|3146474_3147821_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_025404121.1\|3147929_3148544_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_043036367.1\|3148917_3149607_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_009888592.1\|3149643_3150162_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009888594.1\|3150178_3151669_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009906860.1\|3151741_3152245_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009888597.1\|3152302_3152785_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009888599.1\|3152865_3154704_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_8

3455579 : 3464810

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889255.1\|3455579_3457532_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5
WP_009889258.1\|3457795_3458926_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_009889260.1\|3458957_3460967_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.7e-52	35.2
WP_025369782.1\|3461142_3461958_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.4e-36	32.9
WP_009889263.1\|3462022_3462706_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_009889265.1\|3462702_3463230_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889266.1\|3463265_3464810_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2

DBSCAN-SWA_9

3712282 : 3721227

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889661.1\|3712282_3713419_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.7e-49	36.0
WP_155295660.1\|3714116_3714899_-	hypothetical protein	NA	NA	NA	NA
WP_107645277.1\|3714826_3715456_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.5e-31	69.6
WP_009891862.1\|3716137_3717397_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_190275328.1\|3718429_3718735_-	hypothetical protein	NA	NA	NA	NA
WP_009889671.1\|3718795_3719023_+	transcriptional regulator	NA	NA	NA	NA
WP_009889673.1\|3719019_3719403_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	9.9e-07	43.6
WP_009889675.1\|3719446_3720076_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-26	36.2
WP_011402095.1\|3720090_3721227_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-42	32.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP004118

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004118_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004118_1

2437714-2437805

Orphan

Consensus_repeat	Method
CGCTTCCGCCTTGCGCGCGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004118_1

>merge|NZ_CP004118|1|2437714-2437805|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGCCGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCCCGCTTCGGCCTTGCGCGCGTCGC

>NZ_CP004118|1|1|2437714-2437805|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGC	CGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCC
CGCTTCGGCCTTGCGCGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004118.1\|WP_025370245.1\|2435806_2436427_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NZ_CP004118.1\|WP_009896604.1\|2446063_2448094_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP004118.1\|WP_009907539.1\|2430957_2431848_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP004118.1\|WP_025370244.1\|2434182_2435445_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP004118.1\|WP_011401142.1\|2429260_2430739_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277318
NZ_CP004118.1\|WP_009896595.1\|2438639_2439149_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183009
NZ_CP004118.1\|WP_011401150.1\|2442271_2443663_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP004118.1\|WP_009896586.1\|2426024_2426297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_127446362.1\|2443778_2444060_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_011401139.1\|2425507_2425720_-\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP004118.1\|WP_011401144.1\|2431899_2433207_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP004118.1\|WP_009896587.1\|2426610_2427471_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP004118.1\|WP_009899924.1\|2433256_2433982_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP004118.1\|WP_009899936.1\|2441452_2442094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_009896597.1\|2440533_2440692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_009896599.1\|2441011_2441365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_025370246.1\|2439341_2440358_+\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP004118.1\|WP_009896602.1\|2444084_2444426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004118.1\|WP_009907544.1\|2444599_2445790_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP004118.1\|WP_009896584.1\|2424686_2425196_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584

Protein	Function_ID	Function_description	E-value
NZ_CP004118.1\|WP_025370245.1\|2435806_2436427_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.01245e-67
NZ_CP004118.1\|WP_009907539.1\|2430957_2431848_-\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.26079e-68
NZ_CP004118.1\|WP_025370244.1\|2434182_2435445_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27954e-73
NZ_CP004118.1\|WP_011401142.1\|2429260_2430739_-\|metallophosphoesterase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.48527e-09
NZ_CP004118.1\|WP_009896595.1\|2438639_2439149_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47
NZ_CP004118.1\|WP_011401150.1\|2442271_2443663_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	2.05264e-98
NZ_CP004118.1\|WP_009907544.1\|2444599_2445790_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.37834e-55
NZ_CP004118.1\|WP_011401139.1\|2425507_2425720_-\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NZ_CP004118.1\|WP_011401144.1\|2431899_2433207_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.05988e-132
NZ_CP004118.1\|WP_009896587.1\|2426610_2427471_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	4.81736e-51
NZ_CP004118.1\|WP_009899924.1\|2433256_2433982_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.20406e-58
NZ_CP004118.1\|WP_009896604.1\|2446063_2448094_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP004118.1\|WP_025370246.1\|2439341_2440358_+\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP004118.1\|WP_009896584.1\|2424686_2425196_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.02403e-15

>NZ_CP004118.1|WP_025370245.1|2435806_2436427_+|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADMRRRMHARASDVRLFAGIDATLRALAQRGTRIAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYIGDEVRDAQAADRAGIAFRGVAWGYTAPDALQAHCRMPLIERPEELLAL
>NZ_CP004118.1|WP_025370244.1|2434182_2435445_+|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLCFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NZ_CP004118.1|WP_009899924.1|2433256_2433982_-|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP004118.1|WP_011401144.1|2431899_2433207_-|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSASSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAVAHATADARADRIGAPGARHR
>NZ_CP004118.1|WP_009907539.1|2430957_2431848_-|amidohydrolase-family-protein
MSGQEWSACAHAAAMRRAASDITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFALARQWMRDDAMRRAIFVETPARLFRFGELHGA
>NZ_CP004118.1|WP_011401142.1|2429260_2430739_-|metallophosphoesterase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKGVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQIALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NZ_CP004118.1|WP_009896587.1|2426610_2427471_-|class-I-SAM-dependent-methyltransferase
MSNQSIAAPDSTAVRVALWRALHVEIDAPPHVLDDGIGLELAAPDDDWRSRPDMAPQATRGYRASIVGRARFVEDLIGEQAERGVAQYVVLGAGLDTFAQRRAKLASHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASGAWRAQLSAAGFDDSRPAVVSSTGVSMYLTRDAIAGTLRRIATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFFSPAEMLALAREAGFREVRHVSTDDLVRRYFEGRPDGLRPSSGEAFLVAST
>NZ_CP004118.1|WP_009896586.1|2426024_2426297_-|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAVCRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NZ_CP004118.1|WP_011401139.1|2425507_2425720_-|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR
>NZ_CP004118.1|WP_009896584.1|2424686_2425196_+|GNAT-family-N-acetyltransferase
MISIRLLEPADAAAFSALRLVAINTSPTAIWPTRAEEAGRSRMEVEARLRASGTQAVFGALTVDGELIGVAGVRREALVQIGHKATLWGVFVAPAHRGSGLARRLVDAALTHASRDWGVAQVNLCVNTGNEPAKALYASLGFETFGVERRAMRIGDRFYDEQHMVRVLR
>NZ_CP004118.1|WP_009896595.1|2438639_2439149_-|Lrp/AsnC-ligand-binding-domain-containing-protein
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP004118.1|WP_025370246.1|2439341_2440358_+|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGYKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP004118.1|WP_009896597.1|2440533_2440692_+|hypothetical-protein
MVSNNIVALHNFEIACDAISISGEVTVRSRQARGALAGRPMPIAGWMRARSN
>NZ_CP004118.1|WP_009896599.1|2441011_2441365_+|hypothetical-protein
MGFVGGERRRARIAESNEIDGATLITKVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGIWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NZ_CP004118.1|WP_009899936.1|2441452_2442094_-|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAVPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NZ_CP004118.1|WP_011401150.1|2442271_2443663_-|alkaline-phosphatase-family-protein
MAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTRTSDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFERFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NZ_CP004118.1|WP_127446362.1|2443778_2444060_-|hypothetical-protein
MTTEPARASGGARSFTHRADRAAIRRHRQRHLRHQRGYRRNESVFMGGGANSAPGDEFAAMIETAPARAHPPARRVAGTPAAPPCFSRNIGYT
>NZ_CP004118.1|WP_009896602.1|2444084_2444426_-|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NZ_CP004118.1|WP_009907544.1|2444599_2445790_+|serine-hydrolase
MNLESVTPATAAAAATDHAALAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NZ_CP004118.1|WP_009896604.1|2446063_2448094_-|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGAGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVAEELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLASDTRTHLLNRAPEHAGPDGLTQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

505282 : 571941

Aeromonas_phage(25.0%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009907965.1\|505282_506233_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025369917.1\|506500_507445_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009898026.1\|507918_509622_+	M36 family metallopeptidase	NA	NA	NA	NA
WP_009898028.1\|509740_510967_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_009907969.1\|511025_512168_-	porin	NA	NA	NA	NA
WP_025369918.1\|512395_513433_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009907971.1\|513429_514983_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_009898036.1\|515145_516018_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009898038.1\|516161_517037_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009898039.1\|517123_518779_-	APC family permease	NA	NA	NA	NA
WP_009898041.1\|518958_519822_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009898043.1\|519931_521071_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171462515.1\|521091_522360_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_009898046.1\|522384_523170_-	drug:proton antiporter	NA	NA	NA	NA
WP_009907972.1\|523166_524348_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_009898050.1\|524352_526278_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_009898052.1\|526280_528344_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_009898053.1\|528404_528938_-	4-vinyl reductase	NA	NA	NA	NA
WP_009907974.1\|529085_530057_-	dipeptidase	NA	NA	NA	NA
WP_009898057.1\|530128_531403_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	53.4
WP_009898058.1\|531811_532837_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_025369919.1\|533022_534222_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	26.8
WP_009900983.1\|534567_535584_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_025369920.1\|535857_537342_+	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_011401416.1\|537460_539134_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	3.0e-55	31.0
WP_025369923.1\|543764_545336_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_009896560.1\|546881_547781_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009907980.1\|548353_548629_-	hypothetical protein	NA	NA	NA	NA
WP_011401419.1\|548945_549371_-	hypothetical protein	NA	NA	NA	NA
WP_009893756.1\|549393_549753_-	hypothetical protein	NA	NA	NA	NA
WP_009893757.1\|549811_553306_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009893758.1\|553302_555030_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009893759.1\|555112_556474_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009893760.1\|556470_557064_-	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_009893761.1\|557069_557459_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_009893763.1\|557498_558215_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_009893765.1\|558217_559288_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009893766.1\|559287_561504_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_025369925.1\|561507_563796_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_025369926.1\|563964_566256_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009893771.1\|566246_569090_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.2e-61	27.0
WP_009893772.1\|569092_570082_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009901011.1\|570078_571941_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

711359 : 720216

Stx2-converting_phage(30.0%)

integrase,transposase

attL 706219:706234|attR 729068:729083

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
706219:706234	attL	NA	NA	NA	NA
WP_009893915.1\|711359_711932_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.7e-55	65.9
WP_011401460.1\|712550_713048_+	hypothetical protein	NA	NA	NA	NA
WP_011401461.1\|713476_713893_-	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	1.2e-26	58.9
WP_009893919.1\|713936_714116_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_011401462.1\|714395_714923_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	6.2e-60	66.1
WP_011401463.1\|714919_715654_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	3.0e-52	50.9
WP_009893924.1\|715663_716779_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_009893925.1\|716849_717425_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.3e-23	39.0
WP_009889500.1\|717863_719435_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|719464_719812_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009888727.1\|719808_720216_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
729068:729083	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1295800 : 1376708

Ralstonia_phage(42.86%)

plate,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009894648.1\|1295800_1297996_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_009894655.1\|1299710_1300727_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009894657.1\|1300745_1301198_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009894659.1\|1301733_1302579_+	ABC transporter permease	NA	NA	NA	NA
WP_009907076.1\|1302565_1303420_+	ABC transporter permease	NA	NA	NA	NA
WP_009894662.1\|1303416_1304448_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_009894663.1\|1304996_1306067_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-62	43.4
WP_009894664.1\|1306226_1306532_+	H-NS histone family protein	NA	NA	NA	NA
WP_011400785.1\|1306853_1309634_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.8e-89	34.2
WP_025370043.1\|1309647_1311888_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	4.0e-23	28.9
WP_025370044.1\|1311906_1313562_+	DUF2875 family protein	NA	NA	NA	NA
WP_025370045.1\|1313571_1313835_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_082257331.1\|1314670_1316161_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	1.3e-06	28.4
WP_043285126.1\|1316179_1317838_+	DUF2875 family protein	NA	NA	NA	NA
WP_009894667.1\|1317847_1318111_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_043037684.1\|1318408_1319134_+	DUF3274 domain-containing protein	NA	NA	NA	NA
WP_041223674.1\|1319152_1320811_+	DUF2875 family protein	NA	NA	NA	NA
WP_009894681.1\|1320820_1321084_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004523721.1\|1321498_1321918_-	YjbQ family protein	NA	NA	NA	NA
WP_009894689.1\|1321937_1322264_-	thioredoxin family protein	NA	NA	NA	NA
WP_004523719.1\|1322736_1323429_+	hypothetical protein	NA	NA	NA	NA
WP_009894695.1\|1324238_1324595_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009894697.1\|1325069_1326212_-	porin	NA	NA	NA	NA
WP_009907082.1\|1326851_1327775_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009894700.1\|1328336_1328660_-	hypothetical protein	NA	NA	NA	NA
WP_127446348.1\|1328848_1329160_-	hypothetical protein	NA	NA	NA	NA
WP_009894702.1\|1329287_1329533_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_009894703.1\|1329665_1330865_-	transcriptional regulator CynR	NA	NA	NA	NA
WP_025370053.1\|1330864_1332289_-	TolC family protein	NA	NA	NA	NA
WP_009894706.1\|1332282_1333182_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009894707.1\|1333183_1333408_-	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_041223677.1\|1333404_1335471_-	FUSC family protein	NA	NA	NA	NA
WP_025370055.1\|1336480_1338022_-	membrane protein	NA	NA	NA	NA
WP_154660021.1\|1338369_1338726_-	hypothetical protein	NA	NA	NA	NA
WP_025370056.1\|1339570_1342054_+	YadA-like family protein	K4F7R4	Cronobacter_phage	9.0e-08	46.1
WP_025370057.1\|1342129_1343581_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_011400800.1\|1345011_1345566_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_011400801.1\|1345647_1346373_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_162465482.1\|1346421_1346580_-	hypothetical protein	NA	NA	NA	NA
WP_009894721.1\|1346532_1349229_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_025988574.1\|1349221_1349794_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_009907089.1\|1349824_1350514_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009894727.1\|1350516_1352193_+	OmpA family protein	NA	NA	NA	NA
WP_009894728.1\|1352536_1353076_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009894729.1\|1353109_1354609_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009894730.1\|1354809_1355292_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011400803.1\|1355419_1355962_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009894732.1\|1355967_1357317_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009894733.1\|1357313_1358615_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009894736.1\|1358629_1362538_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009894738.1\|1362707_1363277_+	hypothetical protein	NA	NA	NA	NA
WP_011400805.1\|1363377_1365996_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-35	26.0
WP_004523693.1\|1366070_1366340_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_025370061.1\|1366352_1369805_+	RHS repeat protein	NA	NA	NA	NA
WP_038707671.1\|1369697_1371056_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	2.6e-110	49.7
WP_009894750.1\|1371088_1372117_-	fimbrial protein	NA	NA	NA	NA
WP_009894751.1\|1372172_1373243_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_025370062.1\|1373261_1374311_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009894755.1\|1374307_1376188_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009894757.1\|1376189_1376708_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004117

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP004118

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection