CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006716	Bifidobacterium breve S27, complete genome	6 crisprs	cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	2	16	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006716_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_1

1455720-1455813

Orphan

Consensus_repeat	Method
ATTTCAGGGTGAAGCCGTTTATTTCCTGAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006716_1

>merge|NZ_CP006716|1|1455720-1455813|CRISPRCasFinder
ATTTCAGGGTGAAGCCGTTTATTTCCTGAATTTCTGTCACTGAGTTACTGTCAGCGACAGTATTTCAGGGCGAAGCCGTTTATTTCCTGAATTT

>NZ_CP006716|1|1|1455720-1455813|CRISPRCasFinder
ATTTCAGGGTGAAGCCGTTTATTTCCTGAATTT	CTGTCACTGAGTTACTGTCAGCGACAGT
ATTTCAGGGCGAAGCCGTTTATTTCCTGAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_003830628.1\|1441524_1442301_-\|DUF3159-domain-containing-protein	unknown	unknown	gnl\|CDD\|371490
NZ_CP006716.1\|WP_003830623.1\|1447510_1448437_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP006716.1\|WP_025263056.1\|1456173_1457190_-\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|235824
NZ_CP006716.1\|WP_003830626.1\|1443286_1444147_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP006716.1\|WP_003830613.1\|1461127_1461733_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP006716.1\|WP_016462767.1\|1446487_1447492_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP006716.1\|WP_003830625.1\|1444455_1446465_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP006716.1\|WP_025341807.1\|1448826_1450467_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP006716.1\|WP_025263055.1\|1455830_1456088_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_014483623.1\|1465734_1465959_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_025341808.1\|1462507_1465630_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP006716.1\|WP_003832122.1\|1458795_1460727_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP006716.1\|WP_025332342.1\|1452719_1455578_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP006716.1\|WP_016462761.1\|1457183_1458164_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270350
NZ_CP006716.1\|WP_015438937.1\|1461749_1462511_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP006716.1\|WP_025341809.1\|1466056_1467355_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP006716.1\|WP_025332341.1\|1450720_1451740_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP006716.1\|WP_021649177.1\|1442316_1443162_-\|DUF3710-domain-containing-protein	unknown	unknown	gnl\|CDD\|378867
NZ_CP006716.1\|WP_003830620.1\|1451910_1452723_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP006716.1\|WP_095256903.1\|1458222_1458639_-\|alcohol-dehydrogenase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_003830628.1\|1441524_1442301_-\|DUF3159-domain-containing-protein	gnl\|CDD\|371490	pfam11361, DUF3159, Protein of unknown function (DUF3159). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	1.55787e-71
NZ_CP006716.1\|WP_003830623.1\|1447510_1448437_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.90971e-109
NZ_CP006716.1\|WP_025263056.1\|1456173_1457190_-\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	1.51858e-66
NZ_CP006716.1\|WP_003830626.1\|1443286_1444147_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	2.74701e-117
NZ_CP006716.1\|WP_003830613.1\|1461127_1461733_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.65861e-09
NZ_CP006716.1\|WP_016462767.1\|1446487_1447492_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.92055e-91
NZ_CP006716.1\|WP_003830625.1\|1444455_1446465_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP006716.1\|WP_025341807.1\|1448826_1450467_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.59408e-141
NZ_CP006716.1\|WP_016462761.1\|1457183_1458164_-\|hypothetical-protein	gnl\|CDD\|270350	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.15299e-61
NZ_CP006716.1\|WP_025341808.1\|1462507_1465630_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.71039e-15
NZ_CP006716.1\|WP_003832122.1\|1458795_1460727_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP006716.1\|WP_025332342.1\|1452719_1455578_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.18539e-20
NZ_CP006716.1\|WP_025341809.1\|1466056_1467355_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.99525e-144
NZ_CP006716.1\|WP_015438937.1\|1461749_1462511_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.09406e-100
NZ_CP006716.1\|WP_025332341.1\|1450720_1451740_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.4061e-129
NZ_CP006716.1\|WP_021649177.1\|1442316_1443162_-\|DUF3710-domain-containing-protein	gnl\|CDD\|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	2.76849e-66
NZ_CP006716.1\|WP_003830620.1\|1451910_1452723_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.47586e-111

>NZ_CP006716.1|WP_025332342.1|1452719_1455578_+|FtsX-like-permease-family-protein
MIKIGLRDARAHFGRFVMSIIAIALGVSFVVGSFCFREMMNNQVSDMMGTSADHDVYVRGSKEVKSDSSGLMAASSSSKTYNTINVDLASTIGDVKGVKSAEVVYSVSGTVLVGKDGAAVSTMGAPTLAVGFGKDVPWRSATFTSGTYPTSDDEIALHSFAAEKANLKVGDKTKVVYPDGPKDVTVTGIFDLDSSLAGAIIIDIPPSLAKTYATQQSDDPDKTDQIGIYGNLKTPLDEQAQQELADRINKALPAGSKAHAITGNQLRDESTQSAQEALGFVQPLILIFAVIALFVGSFIIANTFSMIVRESMRGYAVLRSIGASPAQVFTTVIVQAIVLGVVGSGIGIGLGWGMVKGIVAMMGQMGTPMTGSSNPSVSDMLVGLAVGLIVTLIGAALPASRAAMAPPIQAMNETVNPEKPVLTRGIIGTTMIVVGALTWAWTCRIALADGDPTLIGWLNDFASWTGTGWPLGVGAALIVIGVIVAGPAWVSPAGAVLGWIPAHVFPVTGRLATRNLSRHKRRTSNTAAALFVGVAIVSCLSVVATSAKASVNDIVDTGLKADFSISSAASGQIPDNAVEAIKGVDGLKSVSSNRMIFGAKYDGKQVKGMTFAAQDSLFTDVFAPEIIAGDANKALRGGELVVGEDIADDQGWKVGDTVKVSTENTTVDEEATAQAQADYQTQVQAQIQSLTEEAQKLALAGDAAGAQAKSDEIQQVTQQAQNVDPATLVKTKQVTVTKKLKVGAIISNSVYRSCVFVNDDLGDQLGTKQTMFTMQMYLVAKPGENLDKLEQRIKKAVKPYYVISVMNRDEYKSTMGSMVDQILLVLYALLALSIVIAIFGIVNTLALSVSERTKEIGLLRAIGTSRGQVRGMLGIEASIIAVFGTVMGMVVGVAAGAVIRAVYEADGLSVLSIPWDQLGVFLVLSILVGLIASVSPASRALKQPVLDAVASE
>NZ_CP006716.1|WP_003830620.1|1451910_1452723_+|ABC-transporter-ATP-binding-protein
MARHSAKGVAQSIEQAEEQHDHVVARAVDLTKTYGDADSQVVALDHVNVEFQRGQMTAIMGPSGSGKSTLMHCMAGLDQPTSGKVFIEGLEVSSMGQKQLTDLRRAQIGFIFQSFNLVPTLCAEENILLPLQIAKKPIDRDWFKQVVKVVGLEKRLTHRPSQLSGGQQQRVACARAMMARPSVIFADEPTGNLDSRSSREVLGFLKQSVTEYGQSIVMVTHDPRAASYADRVLVLADGHITQDLDHPTYEQILEVFADDGADEAGKVAQA
>NZ_CP006716.1|WP_025332341.1|1450720_1451740_-|tyrosine-recombinase-XerC
MRFSSDVDSFISYLRANRGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSSMARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEALQRKNRDISNDFSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRDVDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEGALFLGMRGKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA
>NZ_CP006716.1|WP_025341807.1|1448826_1450467_-|ABC-transporter-substrate-binding-protein
MKKKALAFAAMACSVAMLLSACGGSNSNAASGDTAGSNIITAYNSEPQNPLIPGNTNETGGGKPVDLLFSRLVSFDKDGKASNEVAESITSNDDATQYTIKIKSGWKFTDGTPVTAESFTKAWSYVANAKNAQKCSSFFSAIAGYDDLQKDGLKGDEQLSGLKVVDDTTFTVDLNQSDSVFPIKVGYSAFAPLPESFYKDPKAFGQKPVGNGPYKLDHWDHNKEIALVKNPDYKGNEQPKNDGVTFKVYTDDSAAYRDIQAGNLDVMESVPAAFTKTFKTDKKVQAYSEVGSVIQTFTIPSSLDHFKNDEEGQLRRQAISMAINRDQLIDKVLNGNASAATEFTSPKTPGYSDSLKGADNLKFNASKAKELWAKADAISKYDGQLTFSYNADGGAKPIFDAVVNQLKNNLGIDAATNPIPTFQEFRDAVTNRQMKGAFRTGWQPDYPSAENYLWQLYSTAAADGNGSNDGDYKNPAFDDMCKQAAAAKSVDDANKLYQQAEEILLNDLPAIPLYYSNANGAASLNVKSGYAFDWQNLPTYTEMSKK
>NZ_CP006716.1|WP_003830623.1|1447510_1448437_-|ABC-transporter-permease
MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQPFIVQYFIYLKNALTLNFGDTFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIISGLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWAILPVTAGADPGFLDLLMPAMVLGSASMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQDIGGLMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDMLYAALDPRIRYA
>NZ_CP006716.1|WP_016462767.1|1446487_1447492_-|ABC-transporter-permease
MANETTENELNQTGEPGTEYFMETLPGQDRYVAPLEETPLQDVDSVDESAPATSMWADAWRTLRRNPLFIISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCDVYTRVVYGTRTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRINDIFFALPMLLGAIVVLQMFKTSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNLFRHILPNSLAPIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPMVLFYPSAALAITVLAFIMMGDAVKDALDPKSRTA
>NZ_CP006716.1|WP_003830625.1|1444455_1446465_-|ABC-transporter-ATP-binding-protein
MTDNTNATMLAMQKEHGPLLEVRNLAIDFTTDTGKPVHAVRDANFTVYPGQWVAIVGESGSGKSTSAMAVLGLLPGTGHVVNGSIKLDGEEIAGAKQSEFDKLRGTKMGLVPQDPMSNLNPVWRIGTQVKEALKANNMDVDHEKRSALAKALAGDEVEVKGNDDETFLGAKELPELMTEAKKALTEAGVSGEAFDKAVARFTNEWVPGSETRWRVADDLIKAGVADDQAWYLAKKYVIGSTMDDRIAGLLSEAGLPDAATRARQFPHEFSGGMRQRALIAIGLACRPDLLIADEPTSALDVTVQKRILDHLHMLTDSLGTAVLFITHDLGLAAERAQRIVVMYKGQVVESGPSLEVLQHPQHPYTKRLVAAAPSLASQRIISAKERGENADALLGHHIAGESTLEKSEHIITVDHLTKEFKLPRKKEMFKAVDDVSFSVKRGTTLAIVGESGSGKSTVANMVLHLLKPTSGKVFYEGRDTSTFKAKDLLGFRRHVQPVFQNPYGSLDPMYSIFRSIEEPLRIHKIGDKKWRANRVKELLDMVEMPASVMGRYPNELSGGQRQRIAIARAMALDPDVIVCDEAVSALDVLVQDQVLRLLNDLQAEKGLSYLFITHDLAVVRQIADEVVVMQHGKLVEHATTDEVFDHPQKQYTRDLLDAIPGGKLQLGLD
>NZ_CP006716.1|WP_003830626.1|1443286_1444147_+|exodeoxyribonuclease-III
MTITITTSNVNGIRAAKRKGIEDWAGKHAPDVWCMQEVRAPQDDVDSIFDEFGFEYATAGKIDAPADLHTMNEVCRVKGRAGVGLLTDLEVLDKRYGLPGLSEDVDSGRWIETDVKTPEGYTITVASVYIHAGNTDDPTKMEQKYRFLDTMLARMGALRDEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYDKRWSDHAPLTITYEV
>NZ_CP006716.1|WP_021649177.1|1442316_1443162_-|DUF3710-domain-containing-protein
MGLFGFGKKKDKKETEPAVEPVDEDKVAAEAANAAAKAESAETVLAEPSSEYVGRGEERGPWDVNDEEVPDYDDYLDLGAYYLPFMQNIELRIKANRATQQVLGSTITYGKSSLEIEAFAAPKTLGLWDDVRADLIEANKAASEVEGVFGTELKLPVNVKGGKTVNTRIVGVDGPRWMLRGIFSGVAATDPDSPETEALNKFFADIVVERGEEPLAPRDLIPMHPPVAPAERKAAAEAGEENGKEHFKDIPDNKPKGPLSQDQQTEVKTTLSRGPMFSEVR
>NZ_CP006716.1|WP_003830628.1|1441524_1442301_-|DUF3159-domain-containing-protein
MADNKRTGLSALADAGNEGEDFSVIDAIGGPRGVIESMLPGVVFVVLFVVTSNLNLTIAVSAILAVLQVIARLIQRQSVMGAVSGLVAVGICLIWAWQTHEARNYYIFGFITNAGYAALLAVSLIARVPGLGLVVEFIRSLPTEHFKAWFNDWMSDKALKRAYMIITGLWVGLFLLRLAVQVPLYLTNHVAALGVARLLMGIPFWALAIWVSYLIIATPMHRHKAVATQNVTQSESGSAAEAVSEPVAGKTGKDSDAS
>NZ_CP006716.1|WP_025263055.1|1455830_1456088_-|hypothetical-protein
MTLPRQIPTGARVVVRVTEGVDPTDHRMKFRDYVGHVVSWDGYTLELVRDAAANGSRPAQNVTIHQEQIATLKPIPERPVTPLRP
>NZ_CP006716.1|WP_025263056.1|1456173_1457190_-|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein
MVNTVGIIGLGLIGGSLARRLAERGIRVVAWNHRPHPYAQAEADGIFCKSTLAELMDAEPDVVVLCNPLKAMPAMLDSLAPLMVEHSRTTITDVGSVKGMVREQVEAAGLGECYVGAHPMAGNELSGWQAADPHLYDDALWAVTVDSATNYQRFLDVAALITKGVGNRLIVLDDETHDKAAAMISHMPHVVSTALINELSAYPDRNIAAALAAGCWRDMTRVALTDPNRTRAMVEEDALNVEALLRRMAKRLTDMADQLHDGDETDVIRFFAEGNPFRQYKSALTHASDGAAESLPERELTVPESGWQQTLLFSARRGEAIIGFVNPRQAIIQLRPAM
>NZ_CP006716.1|WP_016462761.1|1457183_1458164_-|hypothetical-protein
MARMKLFYLGPEGTFTHQAAMTAANRFAPLGDFDLVALPDVPAIMQAVESRQGWGVIAWENNVEGYVVPNLDALIDATDVAGFARVSVDVAFNAFTVRGHGIYDCTGGIVSAHAHGLAQCKRFIAEHHLKPEPSSSNAAACRDLQPGQVALGPSICGELYNLDTLAEHVQDFEGARTEFLVIAPRDVVQDLNARAHRNNADDFETIITFIPLVTGPGVLADLLDVLRDAGLNMTSFISRPIKGNDGTYSFIATLDAAPREPKFHAVLEEIAEHGDWAKTLAVYPRRERPSPPVDAWMLPEGGVHVDAEHPSEGWQHTEEARRELLW
>NZ_CP006716.1|WP_095256903.1|1458222_1458639_-|alcohol-dehydrogenase
MRPWSHRQNVLVKVLITIAAGVASAFVGTFAHRMGAELNIPYGLVLAFLIIGLSTWCARSRMGVVGLALHLIASSLTAWGMALTTTSGKALIVAGFQGEMPFFTQHAGYIWLYGLILVQVILLVLPARWFSVMPKQSR
>NZ_CP006716.1|WP_003832122.1|1458795_1460727_-|translational-GTPase-TypA
MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILAKNTAVEYTGPLAAKYGHPEGITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLLLGLADDVQHEGIDLNLDQLLEMPVIYCAAKAGYASTNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANIDSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDSSLENFRVSELLRTQGLDRIPVESAGPGDIVAVAGVNDIMIGETIVDPNDPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARMIKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAEQMRREGYELTVGRPQVVTKKIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIGFRTALLSATRGTGISSSLSAGYAPWAGEITIRQNGSMVSDRQGVATPYAMQRLQARGNFFVEPQSPVYEGQVVGVNNKPDELDVNITLAKHMTNMRSATADVLETLTPPIKMSLEESLDFANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQGK
>NZ_CP006716.1|WP_003830613.1|1461127_1461733_+|PadR-family-transcriptional-regulator
MAIREALLALLERGPASAYQLKKDFDRTIGLTWPLNMGQVSTTLQRLNRDGLIEETAPTTSGSNDVGTAAAAPLWRLTNSGAQELDRWWRSPITPEQRGRDELVMKLAVAVEIPGLDVSELIQHQRHALQQLLHDITRLRRQTPPTELATRLVLDHHIFITEAELRWLDTVDETQLRAQLAQHPVSAPLTASSAALTATIQ
>NZ_CP006716.1|WP_015438937.1|1461749_1462511_+|ABC-transporter-ATP-binding-protein
MTSPVLSSLPQSSPCALELHDVTRVHGKDARRVTALSHANLTLRPGEFVAIMGPSGSGKSTLLNLAGGLDVPTQGHVLVEGRDLATLSVAERAAIRRKSIGYVFQDFNLLPSLSAAENVSFPLELDGWNPRKAREAAMQSLNEVGVADMADRRPEDMSGGQAQRVAIARALVGPRRLLLADEPTGALDSNAGMTILEVLRTRADRGAAVLLVTHEPRFAAWADRTVFLKDGRIIDETGSSNMDDLLNLEERGA
>NZ_CP006716.1|WP_025341808.1|1462507_1465630_+|ABC-transporter-permease
MMARAALNNLANATVGRSAQIPHAARPSLGARCNRYRAALRLGWRDALRHKARTLLSLLLVMLPIAAMVASIGMTTTIPPTRSRALATIPADTQAVITATARPRTGQPFRQSPESGGVWQDDPSQQPASAAELAKILPQQDRLLPYWQSPELIAITGTALQPGEQTKAGIDVKSGNDIDLNAASTATMTEASPEALQRMLPKLVKGSAPQNNTQIVISRTLADNLGASLGSTVTFVAPPFDGWMSLDGRIGEAVADTQRAWTVSGLTDESEAAAWGLEGWMSAILESDGVGVDGHYLVVGPEPVTWAHTRSMNLLQAIVISRHVLTDGYPPASQLYPIQIDAATMLNHMVTVVITMLVGMLLVLFLVTPAFTVSADQSRRVLGLAAASGAAPRDLSRIISSQGLVIGAIGGVLGSALGFALTLAAGPAIGALRGSTPLEILHGFSWGSLPMGIVTAIIIGFAATIAPARHVARMHPVDALKDRPTREEIGYGESANGVDTKLRRNPLRLLRVAVGPILVLAAIVCAALSLTLPLPTLADHNPGAVPAGTEAHMALLVATILLAVIGLALSIRTFARWCGKASSQLNIGARLALRDAAEHHRRFVPAACAVLITMCIASYTLVITGSMVADQRNSTMTMTYGPSGMAIGADVHVSNEFDRAVVSDAIRRLGKETPIRAHYPVYTEDVKRWSKLNDTTEVDSDKLNAEHGYMYAAALLPAGHTCDNPTIQEQPDTSTWVGQDAASALYPNVPIRCVPIDRSHQPTYSNILPSFRGVNLIMDGNAMRLSGFPNADEAAQVLDAGGVVVGDAGTIDAGGMVRVAISPNPAIANESQATHIEKRKAIYVRGAYPLVMSPATAQALGIKQLQYLGEYLDFAGGNSPITVKKASAYAIENLPLASTSTDGNRLPWGDNMALVPIGLLALLALMATLVSLLLARTQAQRDMATMVAVGAPPRFLRRYGLTQAAVILLAGAPVGVVSGVALGWLHVAWNRRIGVDGHWLETVPIWGLQAALAFGVVATGLLVAWLVTKPPRNLTRRSLD
>NZ_CP006716.1|WP_014483623.1|1465734_1465959_-|hypothetical-protein
MSTTTSAQPAQLTRNERLDRLPFNKAHRKLLVASGVGWAFDAMDVGLVSFAAAFILACIAALCLPERKGLNLED
>NZ_CP006716.1|WP_025341809.1|1466056_1467355_-|cysteine-desulfurase
MADTPNTSSEAGELYLDAAATEPVSPAVLEAMTPFLTDAYANPASVHQPGKTAARALDAARASFAAALGARPDDVIFTSGGTESDNLAIKGIAMARMRQLGLQPFYGLAEADGEQFGTDLADPSASSQTGEQTTNHRPRIIISAIEHPAVAQSAAWLHEWFGFDVVHIPVDAQAHLDLDALEHELDGEAGERTALVSTMLANNEVGTVEPVEELVRIAHKHGVPIHVDAVQAAGQIPIRFRDWDVDALSVSGHKFGTPKGLGALLVRGRTSIEPVLSGGGQERGLRSGTQNVAGAVALAIGLNESNARMQAHYRELVASRDMLIDAVRRVAPRADLTGDPERRLPGHASFIFPGVTGEALLVDLDARGIAASSGSACAVGRHEIPPTLLAMGLEPSIAKSALRMTFRTPLTREQVERISLAIEESYTDLTRY

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Crispr_ID: NZ_CP006716_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_2

1678264-1679105

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGA	CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	PILER-CR

12 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP006716_2

>merge|NZ_CP006716|2|1678264-1679105|CRISPRCasFinder,CRT,PILER-CR
ATAGGAACCCACGCTCCCCAGATGGGGAGCGACGCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAGATTTCAATCCACGCTCCCCGAATGGGGAGCGACTGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCAATTTCAATCCACGCTCCCCGGATGGGGATCGACGTCGAAACATGTGTTTTCGCGCAACCTGAGATTTACATTTCAATCCACGCTCCCCGGATGGGGATCGACCGGTTCGGACGGCGCCATCGACCAGTGGGTGGACATTTCAATCCACGCTCCCCGGATGGGGAGCGACAGAATCGGAAGCGTCGTTCCAATCAGATGAAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACATCCGGGTGTGATTTTGAAGACCCTGCTTGACGAATTTCAATCCACGTTCCCCGGATGGGGAGCGACATACACGTCGCCTTTGCCGTACATTGACGCGTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTGTCGAAGTTGGGGATGCGTCCCACGTTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTTATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP006716|2|2|1678264-1679105|CRISPRCasFinder
ATAGGAACCCACGCTCCCCAGATGGGGAGCGAC	GCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	GTCGAAACATGTGTTTTCGCGCAACCTGAGATTTAC
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	CGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP006716|2|1|1678264-1679100|CRT
ATAGGAACCCACGCTCCCCAGATGGGGA	GCGACGCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACCAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGA	GCGACTGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGA	TCGACGTCGAAACATGTGTTTTCGCGCAACCTGAGATTTAC
ATTTCAATCCACGCTCCCCGGATGGGGA	TCGACCGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACAGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGA	GCGACATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACCTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGA	GCGACTCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGA

>NZ_CP006716|2|1|1678333-1679105|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	GTCGAAACATGTGTTTTCGCGCAACCTGAGATTTAC
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	CGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_025341850.1\|1668703_1671013_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP006716.1\|WP_014484097.1\|1688162_1689194_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP006716.1\|WP_003833383.1\|1687815_1688106_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP006716.1\|WP_080685065.1\|1679260_1680718_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP006716.1\|WP_095256858.1\|1667903_1668656_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP006716.1\|WP_021649099.1\|1671257_1671962_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP006716.1\|WP_003830263.1\|1667187_1667883_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP006716.1\|WP_014483522.1\|1665559_1667134_-\|proteasome-ATPase	unknown	unknown	gnl\|CDD\|200312
NZ_CP006716.1\|WP_014484098.1\|1689195_1689885_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP006716.1\|WP_014484096.1\|1687121_1687355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_074525147.1\|1673408_1675271_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP006716.1\|WP_014484099.1\|1689923_1690775_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP006716.1\|WP_025341852.1\|1680714_1681476_+\|ATPase-AAA	unknown	unknown	gnl\|CDD\|366760
NZ_CP006716.1\|WP_015439067.1\|1692739_1693444_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP006716.1\|WP_021649100.1\|1672100_1673114_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP006716.1\|WP_014484101.1\|1693450_1695889_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP006716.1\|WP_003830251.1\|1675437_1675722_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP006716.1\|WP_014483515.1\|1676007_1677228_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP006716.1\|WP_014483523.1\|1664786_1665500_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP006716.1\|WP_014484100.1\|1690778_1692737_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_025341850.1\|1668703_1671013_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP006716.1\|WP_014484097.1\|1688162_1689194_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP006716.1\|WP_003833383.1\|1687815_1688106_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP006716.1\|WP_080685065.1\|1679260_1680718_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.9506e-19
NZ_CP006716.1\|WP_095256858.1\|1667903_1668656_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.9082e-100
NZ_CP006716.1\|WP_021649099.1\|1671257_1671962_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.4378e-46
NZ_CP006716.1\|WP_003830263.1\|1667187_1667883_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.02095e-44
NZ_CP006716.1\|WP_014483522.1\|1665559_1667134_-\|proteasome-ATPase	gnl\|CDD\|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP006716.1\|WP_014484098.1\|1689195_1689885_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP006716.1\|WP_014484099.1\|1689923_1690775_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP006716.1\|WP_074525147.1\|1673408_1675271_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP006716.1\|WP_025341852.1\|1680714_1681476_+\|ATPase-AAA	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP006716.1\|WP_015439067.1\|1692739_1693444_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP006716.1\|WP_021649100.1\|1672100_1673114_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.33225e-126
NZ_CP006716.1\|WP_014484101.1\|1693450_1695889_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.5575e-49
NZ_CP006716.1\|WP_003830251.1\|1675437_1675722_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NZ_CP006716.1\|WP_014483515.1\|1676007_1677228_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP006716.1\|WP_014483523.1\|1664786_1665500_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.86359e-35
NZ_CP006716.1\|WP_014484100.1\|1690778_1692737_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90

>NZ_CP006716.1|WP_014483515.1|1676007_1677228_+|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NZ_CP006716.1|WP_003830251.1|1675437_1675722_+|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP006716.1|WP_074525147.1|1673408_1675271_-|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRIVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP006716.1|WP_021649100.1|1672100_1673114_+|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAETIDRQIRACTPHPGAWTELFAEGLIADSGEANEESADLTTAVKPLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWAGTGTGTLELTQVKAQGKKAMRAADWARGAHLSPTACVK
>NZ_CP006716.1|WP_021649099.1|1671257_1671962_+|HAD-family-phosphatase
MKGWPGEPDMDYNVLVADGEAATNAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDAFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNDAGIRGVRFQNPVKLRELLIANGVNIPDVQ
>NZ_CP006716.1|WP_025341850.1|1668703_1671013_+|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVGGVIWSRTSTSDTPRSSIRYIERVLSPDALVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVEAEQRLTASFRRPVGGSLPDNVQGGFAGRGTLPDGTHPSGSSFEVADSVSEGAAQAYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMVATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMANARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAASIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP006716.1|WP_095256858.1|1667903_1668656_+|phosphoserine-phosphatase-SerB
MSQGFSRIESMTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP006716.1|WP_003830263.1|1667187_1667883_-|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE
>NZ_CP006716.1|WP_014483522.1|1665559_1667134_-|proteasome-ATPase
MGEAENLAELNDRLMAKNHALAEALNRAGKELTKAKSQLAQLAQPPLTFATMVKIDSTHTDEDGVQHASAEVISGTRRMIVPVAANVNASRLAAGSTVVLNEKLVLVEQRDADTVGQIRVVKQILDDGRLIVVDASGNPVLVRRSSALSLTAISQGDRIIVDPSVRLAIELLPNEGDRDLVLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANALCEGGCDMDGDGSINGREQQVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAAEGKLVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVDMIDPAVLRPGRLDVKIRIDRPSGEAAASIVRHYLTDDLPLEQGLDADALSRVLVRDIYTRSERRHLADVRDERGTWNALFLADVVSGASLKNIVDRAKTHAVKASIASGKDVALDATLLGRAVEDEFAETRDSLLDADPVQWARVNGFDAGRVTAIRAVGR
>NZ_CP006716.1|WP_014483523.1|1664786_1665500_+|HAD-family-phosphatase
MKGWPGESELNIPFNEVIAYDAAAAHARQPIANVIFDFGNVLVDWDPQALFMPRYSEKRIEDFLDNDISGFYDACDRMDAGASPAEGIAWIRETHGERWAEMLAYYFDNFLDSLTGTIPGMRVLVHDIKAAGLGVWGLSNWQRETIGEAENAYEILRMLNGRVISSEVHMRKPDTAIYMKALESFGIDAATTVFVDDRASNVIGANRAGIRCIRFRDERGLRETLIDAGVPIPAVAE
>NZ_CP006716.1|WP_080685065.1|1679260_1680718_+|IS21-family-transposase
MPQIQSIRSRRRNGESIASIARSERVSEPTVRKYLRVDGLSARPPVRRRRGSVIDEWLPMIEGMLAEDRETWRKQRHTATRIHERLRDEYGAGVSLSTVTRTVARLRREAAAEREAGFLDLSWHPGECQADFGQVDVRYRGVVTRMRHFVLDFPYSNIGPSRLMPGENAECTCQALRNLFEWLGGVPERIVYDNAAGVGRKRFDRIRLTRLFQAFQAHYGFEYTFRNPYSGHEKGGVEARVGAVRRRLFVPVPGVWNLDSFNLRLPGRCLGLGDKDHYRKGESQTGLFDEDRKALLPLPAKPFDVVTWTRMKADKYGNITVQGRHRYAAGPEHAGHEMIVGLRALEVEILDAEGKRVITHPRSYGDKPTDSGDPSSQLGLLCDRPAAWRNSRVRDAMPDPLREWIDAQDEATRRDSLRALLHADGESGWRAAVAGMLEILESTGGTDRAGVCLAAARHASGLGPVAYDDPVDLSEYDIAYTKEDE
>NZ_CP006716.1|WP_025341852.1|1680714_1681476_+|ATPase-AAA
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP006716.1|WP_014484096.1|1687121_1687355_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP006716.1|WP_003833383.1|1687815_1688106_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP006716.1|WP_014484097.1|1688162_1689194_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP006716.1|WP_014484098.1|1689195_1689885_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP006716.1|WP_014484099.1|1689923_1690775_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP006716.1|WP_014484100.1|1690778_1692737_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP006716.1|WP_015439067.1|1692739_1693444_-|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE
>NZ_CP006716.1|WP_014484101.1|1693450_1695889_-|CRISPR-associated-helicase/endonuclease-Cas3
MGHALMPKDLLLARKDDDGNTQTLYDHLHNTAKLAAGFEKRSSVTAFAAGLLHDSGKATDDFKRYLLTGNRKRGEVVHAKQGAFIVDDCAADFPSSAASMITAEVLELAIANHHGHLPDCLDACGGTAYFRKLTGENKKAEQYHYQEVLSHVSSLNLDINTNFANSVAETNRLLETVDSCGISPRNTRNSRSFFLGLYAKYIYSRLVDADRVDAANFTAHQPYTSQTPNWEELTRRLENAISGFDTSSKISKIRMRISEDCLAASTRDTGIYRLGVPTGGGKTLASLRFALHHAQETGKHHIIYITPYLSITEQTVQVFRNVLDLDKDDEILLEHYSSVVPDKDDEKEQQRRLAAERWDKPIIVTTMVQFLETVMSAKATKLRKFHNLADSVIVFDEVQALPTNTINVFNEVVSFLSKILGSTILLCSATQPLLEQTDRRNLLLSDKPDLIDPDNDYAEQLRRTNIVASSQGLTLDDFAAEIYSKALDNGNCLAVVNLKGEAKQLYQLVKELDVDHRFTLVHLSTAMCGAHRKNQLAVLKKCLPKKTGDSGQPVICISTQLIEAGVDISFSCVIRAMAGLDSILQAAGRCNRNGESQMPRNVYVYPIKDESGLRYLPEIQLGKEITDQLIHDYPEQDLLSAFMIEEYYRAYLIRYPKLVDSKSRNIGTMDYSILGGEETVYDLLSFNRRRRGLYCNRVGEQYPYAFAQAFQTVGDSFHVIPGGTTDVVVHYGQAMELIDQLSGEGDFASKIKILRSLQEYTVSLFDYEFKALDKSKSIGEANGDFGILVLNEENYSQDFGFLLKAEMPLLMK

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Crispr_ID: NZ_CP006716_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_3

1683289-1686297

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder

44 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP006716_3

>merge|NZ_CP006716|3|1683289-1686297|CRT,PILER-CR,CRISPRCasFinder
GAAACACCGACTTGACTAAAAACAGGGAGCGACTCGCCAGACCGAAATCCACGCTCAGGCACTCCAAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACCTCGCGGACCTCATCCTCGACACCATCAGCAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGTGGCGGGAAACATCATCGGTCGTGGACAAATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCAGACACCACGACCCCGGCTGCGGTACACGATACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGATCGCCGTGATCACGGAGGTCACCACGGTTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGACGAATGGCGGAATCCACTGCCTACGCCTCAAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACAGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGGGCTCCTGATCGTCATCATCTACTTCCAGATATTTCAATCCACGCTCCCCGGATGGGGAGCGACCATCCAGTCGAGCATGTGGCCGGTCTCGTGGAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCATGGAGGCCCCGCGCAACAGTGATAATTATGATATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTAATGCTTTTAGAGGCTGTTCACGGCATTGTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCATACACCGTCCTTGGCTGGGTTCGACTGCAAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCACGGCTTACTGCCGTGGGGTATATTATTGTTTATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTACGTTCCCCGGTTGCGATTTGTTTCACGTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAATCGGCAGACCGTATCCTCGGTCGTTAATCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGAAGCAAGACCGCGCCATGGGCCACCCGACTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTCCGGTTTGTTCCATACGGTCACGCCACGTTCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTTAATGTGATTTAATGGGACTGTTGCTGAATTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGGTTGGTCTGCTGGGTCATCTCATTGATAACGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGGAGGTTGCCACGCCCTGCTGTTCCATCTCGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGATATGATGCAATGTATCATCCAGCCCAATGGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCACAATGGAGTTTCGGACGCCGCTTGCAGGTCTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACAAGTCGCCACGTCGAAATTCGGACAGTTTCTACGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTATTTCAACATGCGCTACCGGACGCTGGACATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACATAGTTGTAATAAAGTCCGTGCGATTTACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTTGGTACGCCCAGTCAGCGGACTGTTGACTGTAGATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP006716|3|2|1683289-1686297|CRT
GAAACACCGACTTGACTAAAAACAGGGAGCGAC	TCGCCAGACCGAAATCCACGCTCAGGCACTCCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTTGGTCTGCTGGGTCATCTCATTGATAACGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACATAGTTGTAATAAAGTCCGTGCGATTTACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTGGTACGCCCAGTCAGCGGACTGTTGACTGTAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP006716|3|2|1683357-1686297|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTTGGTCTGCTGGGTCATCTCATTGATAACGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACATAGTTGTAATAAAGTCCGTGCGATTTACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTGGTACGCCCAGTCAGCGGACTGTTGACTGTAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP006716|3|3|1683357-1686297|CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTTGGTCTGCTGGGTCATCTCATTGATAACGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACATAGTTGTAATAAAGTCCGTGCGATTTACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTGGTACGCCCAGTCAGCGGACTGTTGACTGTAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_025341850.1\|1668703_1671013_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP006716.1\|WP_014484097.1\|1688162_1689194_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP006716.1\|WP_003833383.1\|1687815_1688106_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP006716.1\|WP_080685065.1\|1679260_1680718_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP006716.1\|WP_095256858.1\|1667903_1668656_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP006716.1\|WP_021649099.1\|1671257_1671962_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP006716.1\|WP_003830263.1\|1667187_1667883_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP006716.1\|WP_025341857.1\|1697507_1700816_-\|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP006716.1\|WP_014484098.1\|1689195_1689885_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP006716.1\|WP_014484096.1\|1687121_1687355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_074525147.1\|1673408_1675271_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP006716.1\|WP_131068280.1\|1696547_1697090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379250
NZ_CP006716.1\|WP_014484099.1\|1689923_1690775_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP006716.1\|WP_025341852.1\|1680714_1681476_+\|ATPase-AAA	unknown	unknown	gnl\|CDD\|366760
NZ_CP006716.1\|WP_015439067.1\|1692739_1693444_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP006716.1\|WP_021649100.1\|1672100_1673114_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP006716.1\|WP_014484101.1\|1693450_1695889_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP006716.1\|WP_003830251.1\|1675437_1675722_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP006716.1\|WP_014483515.1\|1676007_1677228_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP006716.1\|WP_014484100.1\|1690778_1692737_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_025341850.1\|1668703_1671013_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP006716.1\|WP_014484097.1\|1688162_1689194_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP006716.1\|WP_003833383.1\|1687815_1688106_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP006716.1\|WP_080685065.1\|1679260_1680718_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.9506e-19
NZ_CP006716.1\|WP_095256858.1\|1667903_1668656_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.9082e-100
NZ_CP006716.1\|WP_021649099.1\|1671257_1671962_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.4378e-46
NZ_CP006716.1\|WP_003830263.1\|1667187_1667883_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.02095e-44
NZ_CP006716.1\|WP_025341857.1\|1697507_1700816_-\|mupirocin-resistant-isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP006716.1\|WP_014484098.1\|1689195_1689885_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP006716.1\|WP_014484099.1\|1689923_1690775_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP006716.1\|WP_074525147.1\|1673408_1675271_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP006716.1\|WP_131068280.1\|1696547_1697090_-\|hypothetical-protein	gnl\|CDD\|379250	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3.	8.25072e-05
NZ_CP006716.1\|WP_025341852.1\|1680714_1681476_+\|ATPase-AAA	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP006716.1\|WP_015439067.1\|1692739_1693444_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP006716.1\|WP_021649100.1\|1672100_1673114_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.33225e-126
NZ_CP006716.1\|WP_014484101.1\|1693450_1695889_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.5575e-49
NZ_CP006716.1\|WP_003830251.1\|1675437_1675722_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NZ_CP006716.1\|WP_014483515.1\|1676007_1677228_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP006716.1\|WP_014484100.1\|1690778_1692737_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90

>NZ_CP006716.1|WP_025341852.1|1680714_1681476_+|ATPase-AAA
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP006716.1|WP_080685065.1|1679260_1680718_+|IS21-family-transposase
MPQIQSIRSRRRNGESIASIARSERVSEPTVRKYLRVDGLSARPPVRRRRGSVIDEWLPMIEGMLAEDRETWRKQRHTATRIHERLRDEYGAGVSLSTVTRTVARLRREAAAEREAGFLDLSWHPGECQADFGQVDVRYRGVVTRMRHFVLDFPYSNIGPSRLMPGENAECTCQALRNLFEWLGGVPERIVYDNAAGVGRKRFDRIRLTRLFQAFQAHYGFEYTFRNPYSGHEKGGVEARVGAVRRRLFVPVPGVWNLDSFNLRLPGRCLGLGDKDHYRKGESQTGLFDEDRKALLPLPAKPFDVVTWTRMKADKYGNITVQGRHRYAAGPEHAGHEMIVGLRALEVEILDAEGKRVITHPRSYGDKPTDSGDPSSQLGLLCDRPAAWRNSRVRDAMPDPLREWIDAQDEATRRDSLRALLHADGESGWRAAVAGMLEILESTGGTDRAGVCLAAARHASGLGPVAYDDPVDLSEYDIAYTKEDE
>NZ_CP006716.1|WP_014483515.1|1676007_1677228_+|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NZ_CP006716.1|WP_003830251.1|1675437_1675722_+|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP006716.1|WP_074525147.1|1673408_1675271_-|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRIVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP006716.1|WP_021649100.1|1672100_1673114_+|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAETIDRQIRACTPHPGAWTELFAEGLIADSGEANEESADLTTAVKPLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWAGTGTGTLELTQVKAQGKKAMRAADWARGAHLSPTACVK
>NZ_CP006716.1|WP_021649099.1|1671257_1671962_+|HAD-family-phosphatase
MKGWPGEPDMDYNVLVADGEAATNAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDAFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNDAGIRGVRFQNPVKLRELLIANGVNIPDVQ
>NZ_CP006716.1|WP_025341850.1|1668703_1671013_+|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVGGVIWSRTSTSDTPRSSIRYIERVLSPDALVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVEAEQRLTASFRRPVGGSLPDNVQGGFAGRGTLPDGTHPSGSSFEVADSVSEGAAQAYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMVATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMANARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAASIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP006716.1|WP_095256858.1|1667903_1668656_+|phosphoserine-phosphatase-SerB
MSQGFSRIESMTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP006716.1|WP_003830263.1|1667187_1667883_-|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE
>NZ_CP006716.1|WP_014484096.1|1687121_1687355_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP006716.1|WP_003833383.1|1687815_1688106_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP006716.1|WP_014484097.1|1688162_1689194_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP006716.1|WP_014484098.1|1689195_1689885_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP006716.1|WP_014484099.1|1689923_1690775_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP006716.1|WP_014484100.1|1690778_1692737_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP006716.1|WP_015439067.1|1692739_1693444_-|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE
>NZ_CP006716.1|WP_014484101.1|1693450_1695889_-|CRISPR-associated-helicase/endonuclease-Cas3
MGHALMPKDLLLARKDDDGNTQTLYDHLHNTAKLAAGFEKRSSVTAFAAGLLHDSGKATDDFKRYLLTGNRKRGEVVHAKQGAFIVDDCAADFPSSAASMITAEVLELAIANHHGHLPDCLDACGGTAYFRKLTGENKKAEQYHYQEVLSHVSSLNLDINTNFANSVAETNRLLETVDSCGISPRNTRNSRSFFLGLYAKYIYSRLVDADRVDAANFTAHQPYTSQTPNWEELTRRLENAISGFDTSSKISKIRMRISEDCLAASTRDTGIYRLGVPTGGGKTLASLRFALHHAQETGKHHIIYITPYLSITEQTVQVFRNVLDLDKDDEILLEHYSSVVPDKDDEKEQQRRLAAERWDKPIIVTTMVQFLETVMSAKATKLRKFHNLADSVIVFDEVQALPTNTINVFNEVVSFLSKILGSTILLCSATQPLLEQTDRRNLLLSDKPDLIDPDNDYAEQLRRTNIVASSQGLTLDDFAAEIYSKALDNGNCLAVVNLKGEAKQLYQLVKELDVDHRFTLVHLSTAMCGAHRKNQLAVLKKCLPKKTGDSGQPVICISTQLIEAGVDISFSCVIRAMAGLDSILQAAGRCNRNGESQMPRNVYVYPIKDESGLRYLPEIQLGKEITDQLIHDYPEQDLLSAFMIEEYYRAYLIRYPKLVDSKSRNIGTMDYSILGGEETVYDLLSFNRRRRGLYCNRVGEQYPYAFAQAFQTVGDSFHVIPGGTTDVVVHYGQAMELIDQLSGEGDFASKIKILRSLQEYTVSLFDYEFKALDKSKSIGEANGDFGILVLNEENYSQDFGFLLKAEMPLLMK
>NZ_CP006716.1|WP_131068280.1|1696547_1697090_-|hypothetical-protein
MRQMWGAWPAVRPAGRAPLAASRHRLRQAPAGARAPEGRLRGARGDRRDGAVARRKSAYTRDFERQVAWLSVHAPRSAVSALMRVDWKSVGPICRRVPLGHRGVLEARREDRPPPLRHPAHHPVRTIQRSPGGRQQQDQDHHQDRLRLQEPRQPHRPGHAQMRRPQPPTPRTPITRKPDQ
>NZ_CP006716.1|WP_025341857.1|1697507_1700816_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENVYPKANEGGETAHVAPNPSFPQMEETVLNYWDKDDTFQKSVERNPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQIEKMGIDKFNDACRASVLKYTHEWQDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYFGKPLLEHYTKELGENYEVVRELKGSELAGRRYYPVFPYFAGEKAETEGNVPGPNGYTIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAHGVKSTDVLDAGCRFTSQCPEYEGMYVFDANLPILRNLRAGDGPLAEIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPENVKGGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDKDGNVNMHRPWIDNLTRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQHFPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFDKYGSDAMRWFLMSSPILRGGNLIVTAEGIRDTVRQVMLPVWSSYYFFTLYANAANGGAGFDARQLRADEVAGLPQMDRYLLARTRRLVERVEKSLNEFAISDACDAVSDFIDVLTNWYIRNTRDRFWNEDATAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWPYVVDEKTGADTELGRVLVDDPVLVAAMEKVREVVSGTLSLRKSAKIRVRQPLAKLTVVAEDVDAVKAYDELLKSELNVKDIEFCTMEDAGSQGLKIVHELRVNARAAGPRLGKQVQFAIKASKSGDWSVNASGAPVVSTPSGDLELVEGEYELINRVEEENAAEAAASVSAALPTGGFVILDTALDDDLLAEGYARDAIRAVQDARKAADLDIADRISLVLTVPAADVAKVEQFKDLIAHETLATSFEVKEGAELAVEVAKA

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Crispr_ID: NZ_CP006716_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_4

2035357-2035503

Orphan

Consensus_repeat	Method
AATCTCCTAAAATCCTGTCACTAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP006716_4

>merge|NZ_CP006716|4|2035357-2035503|CRISPRCasFinder
TTCGTCCTAAAATCCTGTCACTGAGTCAAAGCCAATGACAGATATTTAGGAAACCAACCCCAATCTCCTAAAATCCTGTCACTAAGACTCACTTAGCGACAGTAATTTAGGACGACTGGGATAATCTCCTAAAATCCTGTCGCTAAG

>NZ_CP006716|4|4|2035357-2035503|CRISPRCasFinder
TTCGTCCTAAAATCCTGTCACTGAG	TCAAAGCCAATGACAGATATTTAGGAAACCAACCCC
AATCTCCTAAAATCCTGTCACTAAG	ACTCACTTAGCGACAGTAATTTAGGACGACTGGGAT
AATCTCCTAAAATCCTGTCGCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_014484324.1\|2044320_2044629_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP006716.1\|WP_025341916.1\|2036926_2037754_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP006716.1\|WP_025341918.1\|2039690_2040953_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NZ_CP006716.1\|WP_003829777.1\|2042288_2043980_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NZ_CP006716.1\|WP_021649514.1\|2032731_2033589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP006716.1\|WP_003829785.1\|2034569_2035001_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP006716.1\|WP_025341913.1\|2015285_2024768_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NZ_CP006716.1\|WP_003831625.1\|2035617_2036571_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_003829776.1\|2044046_2044298_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP006716.1\|WP_025341919.1\|2041048_2042182_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP006716.1\|WP_025263277.1\|2026422_2028303_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP006716.1\|WP_025341914.1\|2024807_2026430_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP006716.1\|WP_025341917.1\|2038343_2039549_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP006716.1\|WP_003831622.1\|2037786_2038014_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP006716.1\|WP_025341920.1\|2044815_2047869_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP006716.1\|WP_106622436.1\|2029416_2030376_-\|biotin--acetyl-CoA-carboxylase-ligase	unknown	unknown	gnl\|CDD\|223417
NZ_CP006716.1\|WP_003829786.1\|2033861_2034554_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP006716.1\|WP_003829790.1\|2028815_2029415_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP006716.1\|WP_077320687.1\|2013974_2014409_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223508
NZ_CP006716.1\|WP_025341915.1\|2030547_2032653_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_014484324.1\|2044320_2044629_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
NZ_CP006716.1\|WP_003831622.1\|2037786_2038014_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	4.48776e-12
NZ_CP006716.1\|WP_025341918.1\|2039690_2040953_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	1.94735e-61
NZ_CP006716.1\|WP_003829777.1\|2042288_2043980_-\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP006716.1\|WP_106622436.1\|2029416_2030376_-\|biotin--acetyl-CoA-carboxylase-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	2.57451e-30
NZ_CP006716.1\|WP_021649514.1\|2032731_2033589_+\|hypothetical-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.21655e-16
NZ_CP006716.1\|WP_003829785.1\|2034569_2035001_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	8.69761e-91
NZ_CP006716.1\|WP_025341913.1\|2015285_2024768_-\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NZ_CP006716.1\|WP_025341914.1\|2024807_2026430_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP006716.1\|WP_025341920.1\|2044815_2047869_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.67498e-152
NZ_CP006716.1\|WP_025263277.1\|2026422_2028303_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP006716.1\|WP_003829776.1\|2044046_2044298_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49
NZ_CP006716.1\|WP_025341917.1\|2038343_2039549_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP006716.1\|WP_025341919.1\|2041048_2042182_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	5.6731e-176
NZ_CP006716.1\|WP_025341916.1\|2036926_2037754_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.63049e-66
NZ_CP006716.1\|WP_003829786.1\|2033861_2034554_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143
NZ_CP006716.1\|WP_003829790.1\|2028815_2029415_+\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	6.07077e-28
NZ_CP006716.1\|WP_077320687.1\|2013974_2014409_+\|hypothetical-protein	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	6.28896e-15

>NZ_CP006716.1|WP_003829785.1|2034569_2035001_-|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>NZ_CP006716.1|WP_003829786.1|2033861_2034554_-|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>NZ_CP006716.1|WP_021649514.1|2032731_2033589_+|hypothetical-protein
MSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGPQRTGAEGAMRSVQATLYCLKAAPALAATAQSLPRPLRTDDALPERALIGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>NZ_CP006716.1|WP_025341915.1|2030547_2032653_+|hypothetical-protein
MTSPASSLPAAAAHPRLARVGAAARWMLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTAFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLSRAGQQHSNQALEPSQSQSVVADSNVSKRHATAASRFATLGRWITRGTNRFWKLALVFFIGWLWVPTTLLAAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDPTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTSTGNVSSTTSARIAQDSAPQLAGGRARFLILVFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPAGKRKGLTATVPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVTPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFTRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLVERRIARQAQSSALTTMTLPQ
>NZ_CP006716.1|WP_106622436.1|2029416_2030376_-|biotin--acetyl-CoA-carboxylase-ligase
MGGFVRFFARHRESGRANRGNVVPMMIALQAATPQLPRTKAVADQVVAVGETDSTNALAARMIGDGSLTLPERKGGTLAVGVVATDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGEADDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDGTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>NZ_CP006716.1|WP_003829790.1|2028815_2029415_+|biotin-transporter-BioY
MQTSHTTSSTAATASLGRRIVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLTALVGGVVVVYALGFVIQSALTGVPIAAVALASMGFVAGDAIKAVVASLAAAGLSKLGR
>NZ_CP006716.1|WP_025263277.1|2026422_2028303_-|ATP-grasp-domain-containing-protein
MAHIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVNAGKAKAEDSKKEGGND
>NZ_CP006716.1|WP_025341914.1|2024807_2026430_-|acyl-CoA-carboxylase-subunit-beta
MTDIMDSPAVKAVTAASATNASQPPAHQPLRAAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPTNERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>NZ_CP006716.1|WP_025341913.1|2015285_2024768_-|type-I-polyketide-synthase
MSTFFLNRLTTEPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAANRLLTPAAADLLATTGRPVDLFGFTPNPARLSAAADATASVEGVALTQLGALLDLEHLGYSVAQAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGYPEDLAAFAFETEREHQHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLNHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLSERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELDSRRKEIIEALNKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARVSDTDSGEFTSKLFAADGVSADEAAAAGLLTRDGILADPAPALEKLALSYPQTAELKVVPADVAWFPVLVREYPKPMPFLPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNASESNDFAALGEAVSAEDFIRKSPNISWVGHIADNPAYGTALGDQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTELGRVPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTEMPTLSVPSDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPATLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHAEVAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLAAPLVHGMWLSATAQHAVQALDEKGAHYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIGGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGIEEYVEVGLGNAPTLANLGTKTLRLPEFAGNDTVVYNVGRDEGRVYMTDTDSLVPDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAAAAPAPAAPVSAAPAGAPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAVVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSNNDELKAAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTMILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADANVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAEKEASSEKAAIEGEKPEGGAAGSTLKALPTPIVTKQAPVDLADWQNVTARPEDEIVIVSVGELGPWGSGRTRAQAELGIHSDGTVDLSAGAVLELAWNMGLLTWVDSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTRDVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWSIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGMGGKDSKLVRDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANVSLDCVDPKLQRDDHMVWIRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALGSPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKAMLLNPDARLGADGYYEA
>NZ_CP006716.1|WP_077320687.1|2013974_2014409_+|hypothetical-protein
MRALPTTNANPPAAVAAARKAVVEADGVWIFSPEYNYSYPGVLKNLLDWLSPPAGAVPGRVRFRDGRQEGRPVRCRRSVRRRRHARQAQRGAGLWQDRTAAHRQAGRSGSGSRGLGDTDKLTLSDEDEARLAAEADAFLALVAE
>NZ_CP006716.1|WP_003831625.1|2035617_2036571_+|hypothetical-protein
MKTHKEVAALLQTAQREQRCAIGDGGKLYTALRRRTKIGEVVSPYPNLFAATSYWKSLNVEQQSMHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWTYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>NZ_CP006716.1|WP_025341916.1|2036926_2037754_-|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADAPAEAVEPAEPVAEAPVASPETVAESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>NZ_CP006716.1|WP_003831622.1|2037786_2038014_-|preprotein-translocase-subunit-SecE
MAKTSTNEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>NZ_CP006716.1|WP_025341917.1|2038343_2039549_-|pyridoxal-phosphate-dependent-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKAAGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVSADQVVVTNGGKQAVYEAFQILLNDGDEVIIPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQRAALAAVSGPLDEVYEMRKAFDVRRRAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>NZ_CP006716.1|WP_025341918.1|2039690_2040953_+|polysaccharide-deacetylase-family-protein
MAKHHESHGSRGTRRSTVEPRVAYSRHAETHSAHGSQLHYGQHASHRSAAAIAAQRTRRIAVLVVAAVATVALVITVGVVAHGWFARQSAPSMQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGAPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVKETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAAIQ
>NZ_CP006716.1|WP_025341919.1|2041048_2042182_-|glutamate-5-kinase
MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALAAALAQVRLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>NZ_CP006716.1|WP_003829777.1|2042288_2043980_-|GTPase-ObgE
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAIPIPERPRIVILNKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALAELVHEMREEVASREEAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>NZ_CP006716.1|WP_003829776.1|2044046_2044298_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>NZ_CP006716.1|WP_014484324.1|2044320_2044629_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>NZ_CP006716.1|WP_025341920.1|2044815_2047869_-|Rne/Rng-family-ribonuclease
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALSDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRSTRRRAVADDDDAPRPVRRRRTVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDDLEDDDAPRSSRRRTAIDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRHDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDSRNNRRRNETQDDFDADDQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYAPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE

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Crispr_ID: NZ_CP006716_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_5

2149897-2149981

Orphan

Consensus_repeat	Method
CCTTCCCGAATATGTACCACTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006716_5

>merge|NZ_CP006716|5|2149897-2149981|CRISPRCasFinder
CCTTCCCGAATATGTACCACTGACAACGTCGTAGCGTCACATATTCAGGAAACAACCCCACACCTCCCGAATATGTACCACTGAC

>NZ_CP006716|5|5|2149897-2149981|CRISPRCasFinder
CCTTCCCGAATATGTACCACTGAC	AACGTCGTAGCGTCACATATTCAGGAAACAACCCCAC
ACCTCCCGAATATGTACCACTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_003829645.1\|2139425_2140931_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
NZ_CP006716.1\|WP_003832357.1\|2156391_2156640_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350118
NZ_CP006716.1\|WP_106629801.1\|2143136_2143877_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP006716.1\|WP_003832377.1\|2161324_2161996_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_025263324.1\|2154435_2154606_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_025263331.1\|2159221_2161087_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237029
NZ_CP006716.1\|WP_025341948.1\|2146275_2148687_-\|KUP/HAK/KT-family-potassium-transporter	unknown	unknown	gnl\|CDD\|376906
NZ_CP006716.1\|WP_025263316.1\|2136433_2137393_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP006716.1\|WP_025301483.1\|2141235_2142696_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_CP006716.1\|WP_003832351.1\|2150099_2151905_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP006716.1\|WP_025263325.1\|2154722_2156039_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP006716.1\|WP_025341947.1\|2145131_2145992_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|238889
NZ_CP006716.1\|WP_153246528.1\|2156179_2156320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_100218455.1\|2162064_2162334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_155266492.1\|2152104_2153967_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP006716.1\|WP_025341944.1\|2137489_2139151_-\|glycosyl-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119376
NZ_CP006716.1\|WP_025341949.1\|2148885_2149845_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP006716.1\|WP_025341946.1\|2144237_2145002_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|129396
NZ_CP006716.1\|WP_016462700.1\|2158418_2158712_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_003829648.1\|2135511_2136228_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_003829645.1\|2139425_2140931_-\|transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	1.26328e-36
NZ_CP006716.1\|WP_003832357.1\|2156391_2156640_-\|family-43-glycosylhydrolase	gnl\|CDD\|350118	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases. This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been annotated as xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase, EC 3.2.1.8) activities, as well the Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (EC 3.2.1.55) (BT3675;BT_3675) and (BT3662;BT_3662). It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	8.50008e-28
NZ_CP006716.1\|WP_106629801.1\|2143136_2143877_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.07531e-23
NZ_CP006716.1\|WP_025263331.1\|2159221_2161087_-\|methionine--tRNA-ligase	gnl\|CDD\|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP006716.1\|WP_025341948.1\|2146275_2148687_-\|KUP/HAK/KT-family-potassium-transporter	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
NZ_CP006716.1\|WP_025263316.1\|2136433_2137393_-\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.85752e-18
NZ_CP006716.1\|WP_025301483.1\|2141235_2142696_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	4.99814e-11
NZ_CP006716.1\|WP_003832351.1\|2150099_2151905_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.42968e-176
NZ_CP006716.1\|WP_025263325.1\|2154722_2156039_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	8.89501e-27
NZ_CP006716.1\|WP_025341947.1\|2145131_2145992_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|238889	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	3.56777e-38
NZ_CP006716.1\|WP_155266492.1\|2152104_2153967_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.25848e-171
NZ_CP006716.1\|WP_025341944.1\|2137489_2139151_-\|glycosyl-hydrolase-family-25	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	2.95505e-69
NZ_CP006716.1\|WP_025341946.1\|2144237_2145002_+\|HD-domain-containing-protein	gnl\|CDD\|129396	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters. [Hypothetical proteins, Conserved].	3.28559e-14
NZ_CP006716.1\|WP_025341949.1\|2148885_2149845_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	5.74078e-81

>NZ_CP006716.1|WP_025341949.1|2148885_2149845_-|TatD-family-hydrolase
MSKHHHRDRSWAPAPEPLPQDAQTIDNHTHVASVIPFARAMSHEAQEKGQPEVPVYDVDQLLAQAQAVGIGGIIDCGCELPHLMTAVQMAFDHPGNVHAALAIHPNESVLHGHRGVPGPDGLPLKYKPYHDTSFEDALAEVHRLATTYPEQVVAIGETGMDLFRTGEGAKELQREAFRAHIALAKELNLPMQIHDRDSHREVIETLLADGAPERTVFHSYSGDREMGEIAREHGWYLSFSGTVSYKGNDGIRESLRIVGLDHAMVETDAPYLTPMPYRGRTNAPYMIPYTLRAMADTLDLPIADVARGTRNTTRVVYGV
>NZ_CP006716.1|WP_025341948.1|2146275_2148687_-|KUP/HAK/KT-family-potassium-transporter
MAESDKQAERAQKVAKPQKAQKTNAKAGANKAKAKQEEEALLRADTFTNAPKVSRRTLTKEEREAIAKQREAETREAEKIASASSKGRLGRWWARLQSGPDKVTWGMAIVALGVVYGDIGTSPLYTAQTFLAGQGGLGNVDREAVLGMLSLVFWSITLITTVKYVLIAMRIDNNGEGGIFALYSLIRKYGAWLAIPAMLGGAAFLADSVLTPAVSISSAVEGLQTLPPLEQLFDENPSLTLMITVVIIVILFSVQSRGTESIGKVFGSMVLVWFSFLAVVGVVNLNNDWSVFAALNPVYGVKFLFSPHNAAGIALMGTVFLSTTGAEALYSDMGHVGRGNIYFTWPFIKIALVLNYFGQGAWMLNNARNPQFNTMKSLNPFFQMMTPNVRYLAVILSVTAGVIASQALITGAFTMVSEATRLNWMPHLQVRYPARTRGQLYIPVVNGVLCVSTLAVLAIFKDSEHISAAYGLALTITMITTTVLLGVYLWYDRKRVGAIVFTVLFLAIQIMFFIASMAKFLHGGWFTCLLTIAILFVMYTWNEGTKLERAQRRHMRPKDFLPALDKLHGDFRIPYFADNIVYLTSDSETKRLDTDIFFSIFADHPKRARAWWAVSVETTDEPFTREYSVENFGTNYIFRVRFRLGFKVSQSIPAYIHQIMHDLSKTGELPKQKSIYPKVDADPDIGTVRYVLVHKALMPESKVSARGALSLQAKYAIRHVAGSPVKWFGLAPYNPLIEVQPLFVSTRRPPRLKRTDGTKTVPAPTPTRSVADPAAVPDPMDTTAGLSRLVQELDAAMSAEEKK
>NZ_CP006716.1|WP_025341947.1|2145131_2145992_-|class-II-glutamine-amidotransferase
MCRLLGYATAGFNLSLNAVLGQGNVEDFRELSEIHNDGWGVAQLADPASAPYVRDGGAPTPETGTKIYKSTIAARADSTFEALASEPARGAIWHLRLASSNLPLIMENQHPFYANGLSFIHNGDISDANGRNIVTNRSYPVDHSVFLSTGGRSDSAIFFAVILEYVGFGFPLDEAVAQAVRELRQAYPKSSYNCMIQSEDQLIALCAAGREKTSPRIVEIYDEYGRGEQAADYRVMRYHALNDENGDPAGVVVSSSGYEQEGWDVLENDQMLIASNRNGTYRLRSI
>NZ_CP006716.1|WP_025341946.1|2144237_2145002_+|HD-domain-containing-protein
MTGYIPTLEQIDELHRKIAPSEAAYELVHTHCVIVATIGCQIVRRQNALFTRRCTLPKDAPEWGSNRRTENTVDAAVSATPMPPTAGVTGGQVPPRLLDEHLVLIGGLLHDIGTYRVFKHDGSDGEPLKFSKKRYILHGLKGYEYLLDEGVDEYIAQFCRNHTGVGLTCEDVVKQELPLPPADYVPMNLEQEVVMYADKFHSKSVPPKFLQVEAYTARAERFGEDNKRRWLDLVAKYGVPDIPALAEKYGMRVI
>NZ_CP006716.1|WP_106629801.1|2143136_2143877_+|ATP-binding-cassette-domain-containing-protein
MTLASRIDRVLVGGGADDILLKTYPTFALNKVTVPGAKGKINVLDSVEFACYAGHAYALLITDNPDSGLTADTKRRALMGVMSGLVQPKSGTVMNKSANIAELEPVDLRGHRLGIVPQLHAVQPGLDAEQNVLYAMHASNRNFLKPKPVIARELLAKVGFSEATSGVAVSKLPVVQQRLVAIARAISTEAEVLILDEPTRGLNVDDTVTVFAALAKLAHSGDPKHCIIVLTASREIAEAADQMFEI
>NZ_CP006716.1|WP_025301483.1|2141235_2142696_+|ABC-transporter-permease
MFVLSNAWRALMRSKGRTTLTAFITLAVTFGTVAGLAIVQENTTAHTTTYNSQKANMAIRPSAATWKKVSATDSATTKHYMTWSSYTDYASAIQTAGTTLDFTVTGTVPARVSGDLKALDGGSLGSASDDKTGGQLVWRAFWTKDAAKASDLGTFEIVDGKGLSYNNKSANPDTTGALVSEAFAKANNLKVGDTFKVATATSASDTAELKVRGIYKYTSESTVDNPVVAARNRENAIFTNYQTFSKAGLDPQYSNETASGWELPDLNVVFNVTDSATYDSLLKTLKKAKLPVKGYTISSPSLEAYTKSLEPLDTLAARAKTGVIVLLTVGGVLLLALVLLAVWTPKRNDEIGMALVSGVTRGRLGWQFMLEVFFATLPFYVIGLVGGAFAAKPIGAALTSGHTTAVTSSLIWQMVWGGLGAILVLAILAALRLAFFSAAKLFAADGDWGTVSEIETIEEADDEVAELGKAVTTTTTTTNDDAEAKA
>NZ_CP006716.1|WP_003829645.1|2139425_2140931_-|transcriptional-regulator
MRNGLDIGKSIARLGRLQHMPDASVLRNREAKDMANRHAQNNLPNFGWQKVRGPHHIMAYRTSRKAAAAVSMAVIAVLVFVGTFAAATWADVSGAVSSQKVQVIQQKGAKKVDDSPVDPYANKVINILLIGQDTRDGAGNSAIGGSGSDVADLHNSDTTMILQIAADRKSMNLVSIPRDLMVSTPGCQTTNGEIAAQSSVMFNSIFANGYSQGGDVASAASCTMNEVNHLSGLDIQNFMVVDFGGLVNMIDAIGGVDICIPTQMTDVYTGLNLSPGMQHLTGGLATQYARMRHGTGTDGSDTMRTTRQQYLIRQLVKTALSKNYFTQTSELYQLAKSALDSVQMSEGLANVGTLAGLATSLKNFSMDNLYSMTIPITPWVEDPNRSQLADGADAVWEKLRKGQPLVDKAETAATVDGTTTTDGTTADGATADGTTADGTVTDSSTYNEKIGVITQADGTLIDAQTGGIIDPETGAIRSSVTGQFIGMNNRYIEVTYCGVTY
>NZ_CP006716.1|WP_025341944.1|2137489_2139151_-|glycosyl-hydrolase-family-25
MSAKRMMSAVAVLASMTLVSAVCAAPASALSDVSVDARANASTDPFRTQTISDDTAADAMPDNPDAALPDQVSAAIPDDATVVSEDHAVTADGELKNITTGETVTDPALVGTQDSQPDPLAKTDGESFIPVQADEVKQKVAANGGDANAGAADAQTAPDTSDTQPEQTRPNDSSESEQPNQSDSSAPSDSASTSDSGEAAGNASDSATATNGAAKATTKGSVRLAALQNNEYGAHWGSYNGTAAFFDASNNLFVQQAKGVIDVSAWQGNINWQAVKNSGVEGAIIRIGYGWDNGFDKQALRNISECRRLGIPFGIYLYSYAYDANTGAAEGSSLVNLLQKAGVSSSDLGYPVYYDLERWTWTGHEVPNDPGTYDGIVNAWYGRLQSAGYNNLAVYSYTSYLNTALNSGNIHSKTRWVAQYGSSMGYTAFPTNDRGWQYTSRGSVSGISGTVDLNAFGNQTATSSAPSVPVYRVYNPNDGNHLFTMNSYERDNLARLGWHDEGVSWYVPSGGSINVYRLYNPNNGEHVFTTEYGEYVLVGRAGWHQEGVAWTSL
>NZ_CP006716.1|WP_025263316.1|2136433_2137393_-|L,D-transpeptidase
MRRTITKHAFVVIAVMAAFMAVLLPPIPQASADEGSRDMYRLYNPNSGEHFYTADSNERDHLTGVGWVYEGIGWRAPVQSSVPVYRLYNSNAGDHHYTLNSYERDMLVSKGWRYEGIGWYSSDTNRSYPLYRQYNPNAKAGAHNYTLNSNEKDMLVRAGWHDEGLAWYGVGPGEGAPVPQYQRPSGGTYPNLSVTPNLSINVSIADQRVYVKSGSNVIYTLIASTGVNNATPRGTFRIGNRGSSFYNAREGMGANYWVAFEPTNTYLFHSVPTNSSGQYIVSEGYKLGQPASHGCVRLSIPDAQWFYQQLPSGTVVHIF
>NZ_CP006716.1|WP_003829648.1|2135511_2136228_-|hypothetical-protein
MRITMKRICAVISGLMMVLSIAMAVSGPAHVAYADEGSQEMYRMYNPNSGEHFYTANSYERDNLKSLGWHYEGVGWVAPVTSSVPVYRLYNSNAGDHHYTMNSYEKDMLVSKGWRYEGIGWYSADTTNEFPLYRQYNPNAKAGAHNYTLNSNERDALVRAGWRDEGLAWYALGLGGPAQSQPSTPSRPSGPATVPGAITPGAWCKKIEAGQYGRSEDGDLYQCSYQPGDKIPHWYRVQ
>NZ_CP006716.1|WP_003832351.1|2150099_2151905_-|ABC-transporter-ATP-binding-protein
MAQRNTFREDEELEESINLHDIARVGKYLKPYISRIVRILAVVVSMSCIVVSVPYLTKIMIDDAIPNKDLGKLAMLAGGLFCLIVIYELALRYRTVAITRVGQLMLKDMRRDLFTHIQTLPFSYFDSRPHGKILIRVVNYVNTLSDTLSSGLINVFSDIFTFFVTLIVMFAIDWQLALWSLVLFPVLIIWVRVLQYFQRKAYQVLSNKQSNLNAFIHESIAGVKTTQTFAREKEQFDTFQQQQDDVRTAWMAAKHIEFLMWPGVQTISVMTIAFIYFVGITGFGGVSVTTGMLIAFVGYANNFWNPVINIGNFYNQLVTCSAYLERIFETLDVKPEIANKPGATELPAIQGKVDFNDVVFRYEDDGRNILNLVDFHVTPGKTIALVGPTGAGKTTIVSLLSRFYDVSEGSVTIDGHDVRDVTLESLRRQMGVMLQDTFIFSGNVRDNIRYGKLDATDEEIEAAAKAVHAHEFIMELPDGYDTTVEERGSTLSAGQRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLRHLLKGRTSFIIAHRLSTIENADQIFYIDHGQIVEHGTHAELLEAKGAYYRLYESQYAMIRVATGATE
>NZ_CP006716.1|WP_155266492.1|2152104_2153967_-|ATP-binding-cassette-domain-containing-protein
MLPYCKPDLPRVAGALLLFIANNTMALTIPILSGIIVDRVIVGGHTDELPRLCGLMILMTIIRVGARYGYQMWMERFGQNSVYRLVSDEYEKLHELDFTYFNHTRTGDIMSRLTSDTDAIRHCLSWVSYQIADCVVMFIGALCVMFAIDWRLALALACATPFIFVLTRGLSTHAHPLFFAIRNSLASLNSMVEENIEGNRVVKAFVREPYETEKFDEHNDDYMQRNMALAYNSRKYMPWLDGLGFSLQLITLGLGGFLVIKGYMTLGNLVSFNSFLWMIDGPVRASGWLINDWQRFNASCIKIRKLLTEQPRIVEKPDAAEAVKQAVTIVEQVKRDDEATGVTGAPGASGTSGAQQSAERKSCPLRIKGDIRFAHVSFAFPDDPETPILKDLDFTVPAGSKLGILGETGAGKSTLVSLISRFYDPTVGHVLIDGIDARDWPLATLRSQVCIVAQDTFLFSDTIGGNIGFGASDDSDDRYIQKMAQIAGADNFIRSMPQGYDTVVGERGVGLSGGQKQRLSLARALADNPSILIMDDTTSAVDMETEAEIQKHLKEMDGGKTIVAIAHRISSVKDSDLILVLEHGRIVERGTHAELVAAHGRYWDIYHKQLGLQSGAAQGF
>NZ_CP006716.1|WP_025263324.1|2154435_2154606_+|hypothetical-protein
MPSGLQQLEVLRNRARLLHPETSHYMLFSKSGFDEHVATRAAQDGTVTLVDFADMD
>NZ_CP006716.1|WP_025263325.1|2154722_2156039_-|ATP-binding-protein
MLKRHAYDQLLNWKNRKTKQGLLITGARQVGKTTLIEQFGADHYEHVAKVNFIEMPQAVETVSKAKDTEDLILRLSVLSGTEITPGKTLLFLDEMQACEDMLTWTKFLSGAKGLDVIVSGSLLGIDVFNVRSIPVGFLQTMRMYPLNFYEFCAACRLPQPALDTLRECYVDRREVPDYLHERLTDLWYKYLLIGGMPDAVQSFVDSADIVKVRNTQQAIFDTYEYDITKYVSDLVERRHIKSIYEAIPSQLNAENKRFKFSKLGKNIRFAHMQTAFDWLANAGIALPTSRVQDPEYPLTEHADENTFKLYMNDVGLLTSRLIRSVDLEIVNHRSSMNYGSIFENAAAQELFAQGLELHYFNQNRIGEVDFVVQQGLDDISLVEIKSGKDYTRHRAMNNLLDTDNYRFAHAYVFHDGNVETVGRTEYLPIYMLGCLSVI
>NZ_CP006716.1|WP_153246528.1|2156179_2156320_-|hypothetical-protein
MSFVRSADFTRFAQCRTLIAIQRAALLHISRVAGDADSVAQYVKRE
>NZ_CP006716.1|WP_003832357.1|2156391_2156640_-|family-43-glycosylhydrolase
MLLEQDPARKLYATGHHNIVNVPGTDEWIIAYHRFAYNPAGRWAGGDGCHREVVFAPLDYNPDGSLVPVRPQVGSYVRSLAF
>NZ_CP006716.1|WP_016462700.1|2158418_2158712_-|hypothetical-protein
MYSVTFPGNLTQAESALVKRGTIQIAALLAAKITGRGLIINDGDIEYSWDFILVDASSDEQNTFDERLLRMLSDYIHAGFPDAVVRYTKHEAPKLSK
>NZ_CP006716.1|WP_025263331.1|2159221_2161087_-|methionine--tRNA-ligase
MSHVLVNVAWPYANGPRHIGHVAGFGVPSDVYARYERMKGNDVLMVSGTDEHGTPILVEAEKEGLTAQELANRYNRVIAKDLCDLGLSYDLFTRTTTGNHEHVVQEMFKQCLENGYIYKGTQQVAISPSTGRTLPDRYIEGECPICHAEGARGDQCDACGNELDPDELINPVSKINGETPRFEQTEHYFLDLPALAEANKAWLETRKGWRTNVINFSLGLFKEVKPRAITRDIDWGIPVPVKGWIDNPNKKLYVWFDAVIGYLSASIEWARRQGDPEKWREWWNDPKCPAYYFMGKDNITFHSQIWPSEMLAYNGKGSKGGETGPMGPLNLPEQVVASEFMTMEGKKFSSSRGIVIYVKDILARYPVDAVRYYISVAGPESSDSDFTWAEFVRHNNEELASSWGNLVNRVANLINKNFGEIPPLDEDSMTNEDRGLLEETSAAFDVVGSSIETHHQKHALSEAMRVVGDINKYISATEPWKIKDDQARLGTVLHVAAQAVADANHLLAPFLPHSAQKVWEALGGAGTFSPLPELKEVEDLDKPGFTYPIITGNYELGVNVHPWKSEAIEVGAVVPKPTPIFAKIPTEAVKEELARFDEALAARRAVEAERLAAEKAKLAAE
>NZ_CP006716.1|WP_003832377.1|2161324_2161996_+|hypothetical-protein
MRMVGHMNAPNRSMTSTIANAGTARHTTVSPSVPPVLFTKDLPGPLSLSRLETFGTIRKFDESAGYWNEHASTLYGRAMIVSTVAPFGTVACALTAAWVWLGGPDFPRTIDVISTSHFRSTSAGRRIRVFRRVTSPEHIIRLGNLPVTTPQRTACDLVMGMDDAPDPSAINTLVCRLMTAYSFRASECLQIIKEHRHHKHAGRARIFFESLQRESEPALGQCA
>NZ_CP006716.1|WP_100218455.1|2162064_2162334_+|hypothetical-protein
MQSHSPHASAAVNHDAPPSPPIALTPSVACSPDTPIEVLWHIAQHAPELRRWLIANPRADAALLEFISQAGGPGVKRALAVLLESMEEE

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Crispr_ID: NZ_CP006716_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006716_6

2178594-2178670

Orphan

Consensus_repeat	Method
CCCAACCAATCGAAGAACCACCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006716_6

>merge|NZ_CP006716|6|2178594-2178670|CRISPRCasFinder
CCCAACCAATCGAAGAACCACCCCGTCCACGGACCCTCAACGGGGCAAATCTCCCAACCAACCGAAGAACCACCCCG

>NZ_CP006716|6|6|2178594-2178670|CRISPRCasFinder
CCCAACCAATCGAAGAACCACCCCG	TCCACGGACCCTCAACGGGGCAAATCT
CCCAACCAACCGAAGAACCACCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006716.1\|WP_025332520.1\|2164132_2165551_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP006716.1\|WP_003829602.1\|2181072_2181915_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP006716.1\|WP_019727589.1\|2166605_2168435_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP006716.1\|WP_106648951.1\|2184362_2185691_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
NZ_CP006716.1\|WP_025341957.1\|2183138_2184155_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP006716.1\|WP_025341955.1\|2180316_2180922_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377412
NZ_CP006716.1\|WP_100199007.1\|2186103_2186802_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP006716.1\|WP_021648767.1\|2188296_2191044_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP006716.1\|WP_003829589.1\|2186888_2187266_+\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NZ_CP006716.1\|WP_025341951.1\|2168566_2170435_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP006716.1\|WP_100218455.1\|2162064_2162334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006716.1\|WP_003829614.1\|2170618_2171140_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP006716.1\|WP_025263338.1\|2187361_2188129_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP006716.1\|WP_100199006.1\|2162453_2163503_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP006716.1\|WP_103619685.1\|2173841_2177600_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP006716.1\|WP_021648760.1\|2177609_2178311_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP006716.1\|WP_025332521.1\|2165655_2166597_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|376782
NZ_CP006716.1\|WP_025341952.1\|2172065_2173589_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP006716.1\|WP_025341956.1\|2181914_2182769_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP006716.1\|WP_025341954.1\|2178792_2180265_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038

Protein	Function_ID	Function_description	E-value
NZ_CP006716.1\|WP_025332520.1\|2164132_2165551_-\|sodium:solute-symporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.61993e-45
NZ_CP006716.1\|WP_003829602.1\|2181072_2181915_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.68174e-62
NZ_CP006716.1\|WP_019727589.1\|2166605_2168435_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.71034e-178
NZ_CP006716.1\|WP_106648951.1\|2184362_2185691_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	3.39373e-34
NZ_CP006716.1\|WP_003829589.1\|2186888_2187266_+\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	4.09412e-11
NZ_CP006716.1\|WP_025341955.1\|2180316_2180922_-\|DUF624-domain-containing-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	6.16924e-08
NZ_CP006716.1\|WP_100199007.1\|2186103_2186802_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.05315e-50
NZ_CP006716.1\|WP_021648767.1\|2188296_2191044_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.95062e-89
NZ_CP006716.1\|WP_025341951.1\|2168566_2170435_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.64215e-142
NZ_CP006716.1\|WP_025341957.1\|2183138_2184155_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	7.21367e-78
NZ_CP006716.1\|WP_003829614.1\|2170618_2171140_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.75867e-15
NZ_CP006716.1\|WP_025263338.1\|2187361_2188129_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	2.15807e-78
NZ_CP006716.1\|WP_100199006.1\|2162453_2163503_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	6.41448e-106
NZ_CP006716.1\|WP_103619685.1\|2173841_2177600_-\|FtsX-like-permease-family-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.51797e-20
NZ_CP006716.1\|WP_021648760.1\|2177609_2178311_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.05112e-99
NZ_CP006716.1\|WP_025332521.1\|2165655_2166597_+\|FAD:protein-FMN-transferase	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	2.06667e-23
NZ_CP006716.1\|WP_025341952.1\|2172065_2173589_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.17319e-154
NZ_CP006716.1\|WP_025341956.1\|2181914_2182769_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.44829e-53
NZ_CP006716.1\|WP_025341954.1\|2178792_2180265_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	5.35461e-180

>NZ_CP006716.1|WP_021648760.1|2177609_2178311_-|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMVITHNSALAPMAHKVIHFRSGTVTSEEINTAPQPIADIEW
>NZ_CP006716.1|WP_103619685.1|2173841_2177600_-|FtsX-like-permease-family-protein
MATARHSHTGFPGGRPVKHLVKQRSQSVKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYDQQGLHDLQVLSTYGLTGDDVAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQEIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNSGSSKSSDGDTGTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPAGYSGMTAFRSTSSEDYVFFAPSDVVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIAGARAQLESGKTQLTSARQQLDAARAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDIDSSTWQTVKQLLTSLGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKQKTELQQTLDGTIAPAQNALDQQNAQLTAKEQEAAAGEAELNAKLAELESNTAQLETQSAQLEAQAAQLASGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRRIDDVVNARWYMQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGVVVSLRYLLFALLACLFGGGVGLLVGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWSRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAAMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLSNFFGASGGGTVTLDDSGVIVAQSAANSLGVHAGDTVTVSNGGSSRAKIKVAAVVRNLIGSDVYISERLYDQKFAARGIDSSASDGESSTLTWNAMLAKLKGPDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAVTLAFALLVQLFTNPVLDRIEPVSSLKSVE
>NZ_CP006716.1|WP_025341952.1|2172065_2173589_-|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIATAVVMIVIGYHYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPREVLPKAVNEIIVRVLIFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLSEVSPSPMLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPAWKVLNTVAIAFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>NZ_CP006716.1|WP_003829614.1|2170618_2171140_-|MarR-family-transcriptional-regulator
MGFEQEAVGELYASVWGNRSKMQREFTRGAHGEQFVLRELSFKGTQTPSQLATALQASSGRISTVLSSLEKKGWITRDIDSNDRRIIRVSLTDSGREESRRMIDEMRSAICWIFSQMGERRTREFVDLLSEFTTYMSICHPGQPRPTPEQVRGAFAERDKRVAEHMAAKHAEG
>NZ_CP006716.1|WP_025341951.1|2168566_2170435_-|ABC-transporter-ATP-binding-protein
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAVNDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA
>NZ_CP006716.1|WP_019727589.1|2166605_2168435_-|ABC-transporter-ATP-binding-protein
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRVTNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
>NZ_CP006716.1|WP_025332521.1|2165655_2166597_+|FAD:protein-FMN-transferase
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNAAEHTGAIHGRATWDHAIEHHGTTLVTHGPAALDFGACGKGYLVDLIAERLGAAQSDLRYVIDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATTQADGLATALFTTPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>NZ_CP006716.1|WP_025332520.1|2164132_2165551_-|sodium:solute-symporter
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETISQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFSDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLALMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHMLGA
>NZ_CP006716.1|WP_100199006.1|2162453_2163503_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLFGLGNTGSMTSADELNEQRDAEQSVAQVFERNDGNDGIDAGEPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVVAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>NZ_CP006716.1|WP_100218455.1|2162064_2162334_+|hypothetical-protein
MQSHSPHASAAVNHDAPPSPPIALTPSVACSPDTPIEVLWHIAQHAPELRRWLIANPRADAALLEFISQAGGPGVKRALAVLLESMEEE
>NZ_CP006716.1|WP_025341954.1|2178792_2180265_+|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWFPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPKITIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSDLAGKSGQEALGAIHFKLPFAKVTPWVVLVFLAPVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>NZ_CP006716.1|WP_025341955.1|2180316_2180922_-|DUF624-domain-containing-protein
MNWLAPDSKFMRAWSNLIDGVWVNILMLVTSLPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>NZ_CP006716.1|WP_003829602.1|2181072_2181915_-|carbohydrate-ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>NZ_CP006716.1|WP_025341956.1|2181914_2182769_-|sugar-ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWVGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLAMNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>NZ_CP006716.1|WP_025341957.1|2183138_2184155_+|LacI-family-transcriptional-regulator
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRDRVLAIADELNFSLSRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLSFSVQNRFGTFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDISLIGYDDSFYTDDIGLTTIRQDPVDMARKAAHMTLDLIEEKPVDEPYIVAPAHLVVRSSTAKIR
>NZ_CP006716.1|WP_106648951.1|2184362_2185691_-|ABC-transporter-substrate-binding-protein
MMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSKTDVYKELTNQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQSRKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDTGKKAISQDMGFTTPFKTFDDVKFDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKVGQALLEYAQGTGKWDAVKTAFVDGWASEYEASH
>NZ_CP006716.1|WP_100199007.1|2186103_2186802_-|histidine-phosphatase-family-protein
MDGTVAVDASCGKAGFLVLLRHGQTFWSESGQHTGRTNIPLTEVGRQQAMDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTAIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>NZ_CP006716.1|WP_003829589.1|2186888_2187266_+|DUF4235-domain-containing-protein
MSDETSTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>NZ_CP006716.1|WP_025263338.1|2187361_2188129_+|NADPH-dependent-oxidoreductase
MATNATIETLLNRRSIRKFKDEPIDDDATATLETVAQHAASSQFLNDWSAIRVSDPAIKARLAEIGNQPYIATAPLLYVFVIDEHRNARIAQRKGIDPGSDEFHLKYSYRFTQAQNDAVLALHAMETAAYSLGLGGVILGSLLNDIPALIDLLNLPEYTYPVLGLALGKPDQEPTLKPRMPRSMQFFDNTYPADADGMLEQLPDFDNKVHQYYDLRQTDRPVDAFSDQIASVSRQGVSGKTLLDKAAAQGFQLDK
>NZ_CP006716.1|WP_021648767.1|2188296_2191044_+|YhgE/Pip-domain-containing-protein
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIKLKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSQVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAVDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLGGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006716_3	3.15\|1684274\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684274-1684308	35	NZ_CP006716.1	1299268-1299302	0	1.0
NZ_CP006716_4	4.1\|2035382\|36\|NZ_CP006716\|CRISPRCasFinder	2035382-2035417	36	NZ_CP006716.1	2036719-2036754	1	0.972

1. spacer 3.15|1684274|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to position: 1299268-1299302, mismatch: 0, identity: 1.0

gtggtcggcgggcagaagcccttctggtcgctgag	CRISPR spacer
gtggtcggcgggcagaagcccttctggtcgctgag	Protospacer
***********************************

2. spacer 4.1|2035382|36|NZ_CP006716|CRISPRCasFinder matches to position: 2036719-2036754, mismatch: 1, identity: 0.972

tcaaagccaatgacagatatttaggaaaccaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaatcaacccc	Protospacer
****************************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MG878892	Salmonella phage vB_SpuP_Spp16, complete genome	34705-34732	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448960	Streptococcus phage Javan492, complete genome	7017-7044	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448762	Streptococcus phage Javan447, complete genome	7143-7170	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448795	Streptococcus phage Javan527, complete genome	12700-12727	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	NC_028700	Streptococcus phage T12, complete genome	6980-7007	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448790	Streptococcus phage Javan515, complete genome	7430-7457	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448954	Streptococcus phage Javan476, complete genome	7098-7125	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448950	Streptococcus phage Javan464, complete genome	7026-7053	6	0.786
NZ_CP006716_1	1.1\|1455753\|28\|NZ_CP006716\|CRISPRCasFinder	1455753-1455780	28	MK448683	Streptococcus phage Javan149, complete genome	8908-8935	6	0.786
NZ_CP006716_2	2.11\|1678971\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678971-1679004	34	NC_017767	Thermus thermophilus HB8 plasmid pVV8, complete sequence	58815-58848	6	0.824
NZ_CP006716_2	2.5\|1678571\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678571-1678604	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1174959-1174992	7	0.794
NZ_CP006716_2	2.7\|1678704\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678704-1678737	34	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231088	7	0.794
NZ_CP006716_3	3.22\|1684749\|33\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684749-1684781	33	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	200364-200396	7	0.788
NZ_CP006716_3	3.23\|1684815\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684815-1684849	35	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	541728-541762	7	0.8
NZ_CP006716_3	3.34\|1685558\|33\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685558-1685590	33	MN856085	Myoviridae sp. isolate 322, complete genome	5771-5803	7	0.788
NZ_CP006716_2	2.11\|1678971\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678971-1679004	34	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	456877-456910	8	0.765
NZ_CP006716_2	2.11\|1678971\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678971-1679004	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	623506-623539	8	0.765
NZ_CP006716_2	2.11\|1678971\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678971-1679004	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	105074-105107	8	0.765
NZ_CP006716_3	3.5\|1683593\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1683593-1683627	35	NZ_CP038637	Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence	109705-109739	8	0.771
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP034568	Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence	92066-92099	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	27712-27745	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	73144-73177	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP013250	Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence	25345-25378	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	67777-67810	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	48573-48606	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP007006	Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence	19195-19228	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	33412-33445	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	33869-33902	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	48036-48069	8	0.765
NZ_CP006716_3	3.16\|1684342\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684342-1684375	34	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	88964-88997	8	0.765
NZ_CP006716_3	3.17\|1684409\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684409-1684442	34	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	947-980	8	0.765
NZ_CP006716_3	3.17\|1684409\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684409-1684442	34	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	947-980	8	0.765
NZ_CP006716_3	3.18\|1684476\|36\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684476-1684511	36	MN908687	Gordonia phage Skog, complete genome	10742-10777	8	0.778
NZ_CP006716_3	3.38\|1685829\|33\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685829-1685861	33	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	220380-220412	8	0.758
NZ_CP006716_3	3.17\|1684409\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684409-1684442	34	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	181373-181406	9	0.735
NZ_CP006716_3	3.17\|1684409\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684409-1684442	34	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	241595-241628	9	0.735
NZ_CP006716_3	3.23\|1684815\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684815-1684849	35	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	55617-55651	9	0.743
NZ_CP006716_3	3.27\|1685086\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685086-1685120	35	NZ_CP020540	Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence	80070-80104	9	0.743
NZ_CP006716_3	3.27\|1685086\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685086-1685120	35	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	235171-235205	9	0.743
NZ_CP006716_2	2.5\|1678571\|34\|NZ_CP006716\|CRISPRCasFinder,PILER-CR	1678571-1678604	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	149248-149281	10	0.706
NZ_CP006716_2	2.17\|1678566\|39\|NZ_CP006716\|CRT	1678566-1678604	39	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1174954-1174992	10	0.744
NZ_CP006716_3	3.11\|1684004\|33\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684004-1684036	33	NZ_CP006371	Aureimonas sp. AU20 plasmid pAU20d, complete sequence	39703-39735	10	0.697
NZ_CP006716_3	3.23\|1684815\|35\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1684815-1684849	35	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	362265-362299	10	0.714
NZ_CP006716_3	3.38\|1685829\|33\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685829-1685861	33	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	336171-336203	10	0.697
NZ_CP006716_3	3.40\|1685962\|34\|NZ_CP006716\|CRT,PILER-CR,CRISPRCasFinder	1685962-1685995	34	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	354984-355017	12	0.647

1. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MG878892 (Salmonella phage vB_SpuP_Spp16, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
tagctactgagttactgtcagctaaagt	Protospacer
. *..***************** * ***

2. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

3. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

4. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

5. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

6. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

7. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

8. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

9. spacer 1.1|1455753|28|NZ_CP006716|CRISPRCasFinder matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 6, identity: 0.786

ctgtcactgagttactgtcagcgacagt	CRISPR spacer
atgtcactgacttactgtcagagataaa	Protospacer
 ********* ********** **.*.

10. spacer 2.11|1678971|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 6, identity: 0.824

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
aggttcagggccgcgttcaggtcccggtccagct	Protospacer
* ********* ******* *********  **

11. spacer 2.5|1678571|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.794

cggttcggacggcgccatcgaccagtgggtggac	CRISPR spacer
tggttcggacggcgccatcgagcggtgggccatc	Protospacer
.******************** *.*****. . *

12. spacer 2.7|1678704|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atccg--ggtgtgattttgaagaccctgcttgacga	CRISPR spacer
--ccggcgaggtgattttgatgaccctgcttggcgg	Protospacer
  ***  *. ********** ***********.**.

13. spacer 3.22|1684749|33|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

-catccagtcgagcatgtggccggtctcgtggaa	CRISPR spacer
gcgggc-gccgatcatgtggccggtctcgaggaa	Protospacer
 *.  * *.*** **************** ****

14. spacer 3.23|1684815|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
cagcctgcgtcgctgccgaccatgccggccatgat	Protospacer
* ***.*************.*********  **..

15. spacer 3.34|1685558|33|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to MN856085 (Myoviridae sp. isolate 322, complete genome) position: , mismatch: 7, identity: 0.788

ctccggtttgttccatacggtcacgccacgttc	CRISPR spacer
gttcgggttcttccatacggtcacgcccttttc	Protospacer
 *.*** ** ***************** . ***

16. spacer 2.11|1678971|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

17. spacer 2.11|1678971|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

18. spacer 2.11|1678971|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

19. spacer 3.5|1683593|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038637 (Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cgttcgactgcgcggcgatgtgcgccgtgtacaag	CRISPR spacer
catgcgtctgcgcggcgatgtgcgccttgttaatc	Protospacer
*.* ** ******************* ***  *

20. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034568 (Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

21. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

22. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

23. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013250 (Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

24. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

25. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

26. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

27. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

28. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

29. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

30. spacer 3.16|1684342|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

31. spacer 3.17|1684409|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

32. spacer 3.17|1684409|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

33. spacer 3.18|1684476|36|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to MN908687 (Gordonia phage Skog, complete genome) position: , mismatch: 8, identity: 0.778

gtagctttcctcgacgtgcccgccgaaccggccggg	CRISPR spacer
gatgcgctcctcgacgtgctcgccgaaccgacctcg	Protospacer
*  ** .************.**********.**  *

34. spacer 3.38|1685829|33|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
ccgaggtggccgcgccctgctgttccaccgccg	Protospacer
  ***** ***.***************.* *

35. spacer 3.17|1684409|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

36. spacer 3.17|1684409|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

37. spacer 3.23|1684815|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040453 (Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
cgggggctggcgctgccgctgatgccggcgttggc	Protospacer
* *    .* ******** * **************

38. spacer 3.27|1685086|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020540 (Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence) position: , mismatch: 9, identity: 0.743

cggctca---tctccgacgaggtggcgcaggccaatga	CRISPR spacer
---cccaagctctccgaagcggtggcgcaggccaagct	Protospacer
   *.**   ******* * ***************

39. spacer 3.27|1685086|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 9, identity: 0.743

cggctca---tctccgacgaggtggcgcaggccaatga	CRISPR spacer
---cccaagctctccgaagcggtggcgcaggccaagct	Protospacer
   *.**   ******* * ***************

40. spacer 2.5|1678571|34|NZ_CP006716|CRISPRCasFinder,PILER-CR matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 10, identity: 0.706

cggttcggacggcgccatcgaccagtgggtggac	CRISPR spacer
ggtttcgggcggcgccatcgacgagtggcaccgg	Protospacer
 * *****.************* *****    .

41. spacer 2.17|1678566|39|NZ_CP006716|CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 10, identity: 0.744

tcgaccggttcggacggcgccatcgaccagtgggtggac	CRISPR spacer
tgacctggttcggacggcgccatcgagcggtgggccatc	Protospacer
* . *.******************** *.*****. . *

42. spacer 3.11|1684004|33|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006371 (Aureimonas sp. AU20 plasmid pAU20d, complete sequence) position: , mismatch: 10, identity: 0.697

tgatcgccgtgatcacggaggtcaccacggtta	CRISPR spacer
agatcgccgtggtcgcggaggtcacggaattct	Protospacer
 **********.**.********** . . *.

43. spacer 3.23|1684815|35|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.714

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
agaaccgcatcgctgccgatcatgcgggcgtacct	Protospacer
  . ****.**************** *****   .

44. spacer 3.38|1685829|33|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
gctgacgtgccacgccctgctgctccaactcca	Protospacer
*  ..  ***************.**** ***

45. spacer 3.40|1685962|34|NZ_CP006716|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

cacaatggagtttcggacgccgcttgcaggtctt	CRISPR spacer
atggttggggtttgggacgccgcttgcagtcaag	Protospacer
   . ***.**** *************** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006716

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection