CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP003181	Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome	7 crisprs	csa3,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas9,DEDDh,DinG	0	16	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003181_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_1

1531412-1532782

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CRT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGCAGGCGGGGAACAC	PILER-CR

22 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP003181_1

>merge|NZ_CP003181|1|1531412-1532782|CRT,CRISPRCasFinder,PILER-CR
TCCGGCCTTCGCTGACAGGCGGGGAACACGGCTCCTCTGGCGCTCGGTGCAGATGTGCCGCGGGTTCATCCCCGCGCAGGCGGGGAACACGCTCAATTCCATCGAGGGATGCTACGATCCGGCGGTTCATCCCCGCGCAGGCGGGGAACACATATGTGGTGGAACGCGAATAATGACGAAATCCGGTTCATCCCCGCGCAGGCGGGGAACACAGACGATTGGACTCCCGGTGACGCGGGATACTCGGTTCATCCCCGCGCAGGCGGGGAACACTACGTCCACTATGAAGGCGATGATCAAGCGGCCGGTTCATCCCCGCGCAGGCGGGGAACACGGGCCGAGTTCATCAAAATTCGCAAAGTTGACCGGTTCATCCCCGCGCAGGCGGGGAACACATGCAGTGGGCCGGTGGGCTCAGCGTGGACCACGGTTCATCCCCGCGCAGGCGGGGAACACTGTTGTCATTTTTTTCACCAAGTTTTTGATGACGGTTCATCCCCGCGCAGGCGGGGAACACTCTTTCGGCGGCCCTGATTTTGGCCATCTCCGCGGTTCATCCCCGCGCAGGCGGGGAACACAAGACGGGGGGCATTTTTTTGACATCCTCCGGCGGTTCATCCCCGCGCAGGCGGGGAACACTGCCAAGAGCTGATTTGTATACTGCGAGTAGGCGGTTCATCCCCGCGCAGGCGGGGAACACAGATGAAACAAATATTCTCACAAGGGATGGACCGGTTCATCCCCGCGCAGGCGGGGAACACCCAGATCGGCGGACTGACTGAGCTGCCGGCCCCGGTTCATCCCCGCGCAGGCGGGGAACACGTCCGGCGTCCGGCACTGTCCAGACTGCCGACCGGTTCATCCCCGCGCAGGCGGGGAACACCGCCGCCACCTGCGGGAAAAGCGGCGCGAGTTCGGTTCATCCCCGCGCAGGCGGGGAACACTGTGTTTAAGTGCCGGGAGCACAAAGGGGCGGCGGTTCATCCCCGCGCAGGCGGGGAACACTCATTTTCTAGCTCGTTCCGCAATTCCTGTCGCGGTTCATCCCCGCGCAGGCGGGGAACACTAATGCTGGGCGAAGGAGACGCGCAAGATGCGCGGTTCATCCCCGCGCAGGCGGGGAACACCTCGTGACGACCCCATGGGACAACGAACAGTCCGGTTCATCCCCGCGCAGGCGGGGAACACGGTAGAATTTGAATTCTGATTGTATCAGACATCGGTTCATCCCCGCGCAGGCGGGGAACACACTGCACCCCTCCCGGCATCTCTCAGCAGGACCGGTTCATCCCCGCGCAGGCGGGGAACACCAGATGGCGGATGCCGCCACTCACACCACGCCCGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003181|1|1|1531412-1532782|CRT
TCCGGCCTTCGCTGACAGGCGGGGAACAC	GGCTCCTCTGGCGCTCGGTGCAGATGTGCCGC
GGGTTCATCCCCGCGCAGGCGGGGAACAC	GCTCAATTCCATCGAGGGATGCTACGATCCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATATGTGGTGGAACGCGAATAATGACGAAATC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGACGATTGGACTCCCGGTGACGCGGGATACT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TACGTCCACTATGAAGGCGATGATCAAGCGGC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGGCCGAGTTCATCAAAATTCGCAAAGTTGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATGCAGTGGGCCGGTGGGCTCAGCGTGGACCA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTTGTCATTTTTTTCACCAAGTTTTTGATGA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCTTTCGGCGGCCCTGATTTTGGCCATCTCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AAGACGGGGGGCATTTTTTTGACATCCTCCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGCCAAGAGCTGATTTGTATACTGCGAGTAGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGATGAAACAAATATTCTCACAAGGGATGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCAGATCGGCGGACTGACTGAGCTGCCGGCCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GTCCGGCGTCCGGCACTGTCCAGACTGCCGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CGCCGCCACCTGCGGGAAAAGCGGCGCGAGTT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTGTTTAAGTGCCGGGAGCACAAAGGGGCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCATTTTCTAGCTCGTTCCGCAATTCCTGTCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAATGCTGGGCGAAGGAGACGCGCAAGATGCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CTCGTGACGACCCCATGGGACAACGAACAGTC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGTAGAATTTGAATTCTGATTGTATCAGACAT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ACTGCACCCCTCCCGGCATCTCTCAGCAGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CAGATGGCGGATGCCGCCACTCACACCACGCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003181|1|1|1531473-1532782|CRISPRCasFinder
GGGTTCATCCCCGCGCAGGCGGGGAACAC	GCTCAATTCCATCGAGGGATGCTACGATCCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATATGTGGTGGAACGCGAATAATGACGAAATC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGACGATTGGACTCCCGGTGACGCGGGATACT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TACGTCCACTATGAAGGCGATGATCAAGCGGC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGGCCGAGTTCATCAAAATTCGCAAAGTTGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATGCAGTGGGCCGGTGGGCTCAGCGTGGACCA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTTGTCATTTTTTTCACCAAGTTTTTGATGA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCTTTCGGCGGCCCTGATTTTGGCCATCTCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AAGACGGGGGGCATTTTTTTGACATCCTCCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGCCAAGAGCTGATTTGTATACTGCGAGTAGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGATGAAACAAATATTCTCACAAGGGATGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCAGATCGGCGGACTGACTGAGCTGCCGGCCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GTCCGGCGTCCGGCACTGTCCAGACTGCCGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CGCCGCCACCTGCGGGAAAAGCGGCGCGAGTT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTGTTTAAGTGCCGGGAGCACAAAGGGGCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCATTTTCTAGCTCGTTCCGCAATTCCTGTCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAATGCTGGGCGAAGGAGACGCGCAAGATGCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CTCGTGACGACCCCATGGGACAACGAACAGTC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGTAGAATTTGAATTCTGATTGTATCAGACAT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ACTGCACCCCTCCCGGCATCTCTCAGCAGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CAGATGGCGGATGCCGCCACTCACACCACGCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003181|1|1|1531534-1532782|PILER-CR
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATATGTGGTGGAACGCGAATAATGACGAAATC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGACGATTGGACTCCCGGTGACGCGGGATACT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TACGTCCACTATGAAGGCGATGATCAAGCGGC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGGCCGAGTTCATCAAAATTCGCAAAGTTGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATGCAGTGGGCCGGTGGGCTCAGCGTGGACCA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTTGTCATTTTTTTCACCAAGTTTTTGATGA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCTTTCGGCGGCCCTGATTTTGGCCATCTCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AAGACGGGGGGCATTTTTTTGACATCCTCCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGCCAAGAGCTGATTTGTATACTGCGAGTAGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGATGAAACAAATATTCTCACAAGGGATGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCAGATCGGCGGACTGACTGAGCTGCCGGCCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GTCCGGCGTCCGGCACTGTCCAGACTGCCGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CGCCGCCACCTGCGGGAAAAGCGGCGCGAGTT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TGTGTTTAAGTGCCGGGAGCACAAAGGGGCGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCATTTTCTAGCTCGTTCCGCAATTCCTGTCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAATGCTGGGCGAAGGAGACGCGCAAGATGCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CTCGTGACGACCCCATGGGACAACGAACAGTC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGTAGAATTTGAATTCTGATTGTATCAGACAT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ACTGCACCCCTCCCGGCATCTCTCAGCAGGAC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CAGATGGCGGATGCCGCCACTCACACCACGCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_025320493.1\|1527417_1527885_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184367
NZ_CP003181.2\|WP_081371691.1\|1528064_1529252_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755
NZ_CP003181.2\|WP_025286782.1\|1542545_1543583_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP003181.2\|WP_025286777.1\|1534769_1535444_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|378243
NZ_CP003181.2\|WP_051496993.1\|1526492_1527416_+\|P-type-conjugative-transfer-protein-TrbG	unknown	unknown	gnl\|CDD\|237543
NZ_CP003181.2\|WP_025286780.1\|1537007_1538465_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP003181.2\|WP_025320495.1\|1525695_1526388_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|319762
NZ_CP003181.2\|WP_025286776.1\|1534084_1534768_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003181.2\|WP_038515528.1\|1520446_1522945_+\|transporter	unknown	unknown	gnl\|CDD\|184375
NZ_CP003181.2\|WP_011632077.1\|1532853_1533141_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP003181.2\|WP_011632078.1\|1533137_1534085_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP003181.2\|WP_025286775.1\|1530016_1530580_-\|S26-family-signal-peptidase	unknown	unknown	gnl\|CDD\|172365
NZ_CP003181.2\|WP_025286779.1\|1536507_1537011_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003181.2\|WP_081366662.1\|1542082_1542526_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|235875
NZ_CP003181.2\|WP_025286781.1\|1538840_1541339_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003181.2\|WP_025286778.1\|1535443_1536508_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003181.2\|WP_025286768.1\|1520117_1520432_+\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|184348
NZ_CP003181.2\|WP_072490552.1\|1522925_1523687_+\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NZ_CP003181.2\|WP_051496885.1\|1523689_1525429_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_CP003181.2\|WP_025286774.1\|1529393_1529984_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_025320493.1\|1527417_1527885_+\|hypothetical-protein	gnl\|CDD\|184367	PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.	6.53916e-06
NZ_CP003181.2\|WP_081371691.1\|1528064_1529252_+\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.65802e-82
NZ_CP003181.2\|WP_025286782.1\|1542545_1543583_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP003181.2\|WP_025286777.1\|1534769_1535444_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|378243	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.	2.76077e-40
NZ_CP003181.2\|WP_051496993.1\|1526492_1527416_+\|P-type-conjugative-transfer-protein-TrbG	gnl\|CDD\|237543	PRK13885, PRK13885, conjugal transfer protein TrbG; Provisional.	5.06061e-89
NZ_CP003181.2\|WP_025286780.1\|1537007_1538465_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.36966e-106
NZ_CP003181.2\|WP_025320495.1\|1525695_1526388_+\|conjugal-transfer-protein	gnl\|CDD\|319762	cd16425, TrbF, conjugal transfer protein TrbF. This family includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer. This domain is similar to the type IV secretion system (T4ASS) component VirB8 and possibly has a similar fold to the nuclear transport factor-2 (NTF-2)-like superfamily.	6.26902e-52
NZ_CP003181.2\|WP_025286776.1\|1534084_1534768_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.03779e-57
NZ_CP003181.2\|WP_038515528.1\|1520446_1522945_+\|transporter	gnl\|CDD\|184375	PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.	0
NZ_CP003181.2\|WP_011632077.1\|1532853_1533141_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.21924e-58
NZ_CP003181.2\|WP_011632078.1\|1533137_1534085_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.39352e-136
NZ_CP003181.2\|WP_025286775.1\|1530016_1530580_-\|S26-family-signal-peptidase	gnl\|CDD\|172365	PRK13838, PRK13838, conjugal transfer pilin processing protease TraF; Provisional.	1.02094e-30
NZ_CP003181.2\|WP_025286779.1\|1536507_1537011_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.70848e-18
NZ_CP003181.2\|WP_081366662.1\|1542082_1542526_-\|cytidine-deaminase	gnl\|CDD\|235875	PRK06848, PRK06848, cytidine deaminase.	5.06475e-73
NZ_CP003181.2\|WP_025286781.1\|1538840_1541339_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.54936e-119
NZ_CP003181.2\|WP_025286778.1\|1535443_1536508_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.03403e-113
NZ_CP003181.2\|WP_025286768.1\|1520117_1520432_+\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|184348	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.	7.21181e-39
NZ_CP003181.2\|WP_072490552.1\|1522925_1523687_+\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	4.07283e-41
NZ_CP003181.2\|WP_051496885.1\|1523689_1525429_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	3.39783e-65
NZ_CP003181.2\|WP_025286774.1\|1529393_1529984_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	5.32817e-77

>NZ_CP003181.2|WP_025286775.1|1530016_1530580_-|S26-family-signal-peptidase
MNAHRFAGGAWIVTTAIALIVGGSYSAGLRINMTASAPRGLWLISRIEAGSVRPGEMVSVCPPAQRVVIAMLRHGFIGPGNCLGTDSEPLLKPVAAVAGNTVIIRPAGLIEVNGMLLPNSAPLANMPAWPAGTYTVKPGQVWLISSYDPGSFDSRYFGPVPTANILGQAIPILIDGDAKRMALRPLL
>NZ_CP003181.2|WP_025286774.1|1529393_1529984_-|lytic-transglycosylase-domain-containing-protein
MFVDPALIQTCAPTVAPSTVQSIIQVESKGNPLAINVNGTKLARQPRDIVDATALATAYIKAGYSVDLGLMQVNSKNLSKLGYTISDMFIPCKNLSAGAQILTKFYTSGREQMIDPQIALRAALSAYNTGNFISGFRNGYVARYFAGSLLTKFGQFTAENKAQEKDDSSSYGQQIMNPYTANTVVYVRHEETILQK
>NZ_CP003181.2|WP_081371691.1|1528064_1529252_+|TrbI/VirB10-family-protein
MNYVAKAPIESGKVVAKATPPVNPSDAVPPTPPSQLQPIVPKIAPIQTQTMSEEYKARLELIQHITSRRVDTELEALSAASDVQGFTKTATQKAVNESTPMPRPLVGLPNADAMLATQAGNLGSQTDGFMPIVPPINYSGGISGSGIGGFGGLANNLGGFGILPGLGSGQNNDQNQQREKNAFLSQKSDVNSPYLPYTRTAPLSNTEVKAGTVIPGVMISGVDSDLPGQIIAQVRQNVYDTATGRYLLIPAGARLIGSYDSRITMGQSRVLVGWKRIIYPDGSSVSLDFMPGTDQSGYAGFKDQVNNHMWKIFGNALLMSVFSAGVQLSQPQATNGQNFNSSQIVAGMLGQQLAEAGIVMANRGMNIQPTLEIRPGYEFNIMVTKDVILPPWNSN
>NZ_CP003181.2|WP_025320493.1|1527417_1527885_+|hypothetical-protein
MKKHFLIFSILTLSALTGCAALPDSSISYVSEKITNPSDASVMAYDAADYLTTVLPPAQTILLLDPPQSLHGNILTPTFETALRARGYALMQLPRYPSPVSKQPLGTQLRYLISPLDGGVLLQLQYQGVEAARFYYRDKNGALTFNAPFTVRESH
>NZ_CP003181.2|WP_051496993.1|1526492_1527416_+|P-type-conjugative-transfer-protein-TrbG
MAQNTTQPPEEPVKLTRTPATNASKPFAPLPAVPFLSSNIVPLTEKEAYGLKLADEWKNHPDRPRRGGDGSVVYLYGATMPVLICTPLEVCSIRLQPGEIVNDVHTGDIARWRINPATSGSGGSTTTFVVVKPTDSGLTTDLFITTTRRSYTIKLVSDQQRWIPILSFDYPDDIQAAWASYHQREGEAQQASAANYARNTMPETGQNLANLDFRFLLSGDNPSWIPLRVYTDGLKTYIQFPRAGFPNGAPALVALGEGGWFHSAPTKLVNYRVSGDRYVVDQVLHRAALITGVGGDQQRVIITYEGN
>NZ_CP003181.2|WP_025320495.1|1525695_1526388_+|conjugal-transfer-protein
MKRQVPDKQKTVNAPLSPYIAARREWNERYGEYIKKAKTWRLTAFFALGIALVAVGGLVSVSMQSRVVPYIVSLNGHNDVVRVERAEVLKQPDSNVIEAALANWVIGARTIYTDGQAMKNLIDTTYAMTLPQSPAYQALASYHREHNPYILSSSENISVQINLVVPVSNESWQVEWTETTKSPSGKVISTKDWKATLTISLAPPADPQQIMLNPLGVYVRQFAWSSRLPS
>NZ_CP003181.2|WP_051496885.1|1523689_1525429_+|P-type-conjugative-transfer-protein-TrbL
MHIKAAIQIIILVVLAVVDILIARQIDSGRRVSVTVNSHALVIFSDKQFFSPQPKIIDTYTIIKKSVVLILFVFGTVLLFSDASHAADLSNPTQSYQGLLDLIQSGANSWNARLLGYAKDLFWSLALIQLVWTFAPLVLKGADIGEIVGELLYFVMIIGFFYALLTNAVTWATDIVNSFRQAGAMAAGVGQQLEPGNMFGFAVQMAKTIGETRTVNPLIAGMVSLATVIVLLCFSFISAFMGVTLVESYIVINASVFFLGFGGSQWTRGYATAMARYAVAVGAKLFVLTLLIGIIIQSGNSWAAAYSRDQVSMWTMVGLSLVCAYLSKKIPDLVQSMISGSSIGNLSVVGARTAFTAATGGVSSIPPVAGGIGKAAEFDVNTAGRNIANAMDSSFTEHIKISGIMGSSESSSIQTASLLSPRVGGSTHISKSDTDSLAQNRSRQGDSYISRIPDGSSGISAPITIVADNMRTAAAAPDGASGGKTGTPQPFSQQTPSDSPSRPISMVFAQSALAGALGDTGLLSTLSVPGMERTHKLNLGQSPQNGGNGEGKTWARNDTFPSSKPENMLRPSPDPKKKT
>NZ_CP003181.2|WP_072490552.1|1522925_1523687_+|P-type-conjugative-transfer-protein-TrbJ
MKNLFSKLLFFRLMTFALGIVLFAGVNPAYAQWAVTCVNCSNLLSQMLQYGKEVETAAISAQQLETQIQQYQSMVRQGLSLPQSLFSQITSNLAKIQSLYNQSSAVAGNIANFENNFSAKFPDYNTYLTNNGQNPAYVQDFYKQWAQNGLDSNKAAMGVAGTNVNQIQAEDSQLASLINQSQSAAGQLQAIQAANQIAAQQVQQMQKLRELVNAQIQNEGNYYAQAIQRQAIDDAATAAFYSGTVNRSGAKGY
>NZ_CP003181.2|WP_038515528.1|1520446_1522945_+|transporter
MLALQQFRSKVAGLPDLLNYAALIDEGIILGKDGSLIAGFFFRGDDAAVATNSELNYLTAMVNTYLARFGAGWAIWIDAIRIDSPGYPEPEAAHFLEPISAMIDAERRAMFEQDAAHYETEYAIIVEYLPPLLRESRFSEMVYNDSEADHSAPPGNRHLEDFQKRLLDLEDGLGDLLHMRRMKTLRSETPEGESYDSDELVNYLHFCLTGEAMALRIPDCPMYLDAWLGFPELWPGDIPKLGEKFFMCVAIEGFPGMTEPGMLGMLDGLPLAYRWSSRFIFLEQHEAVAALNRYRLKWQQKVRGFWSQVIKSQKGMINTDALGMVHESEEAINEAKSDLVAYGYYTPVIVLIHKDRAFLEEQARYIKREVERRGFSARIESVNTLEAWLGSLPGHTYPNIRRPLVHTLNLADLLPLASIWPGERECPCNFYPAGSPPLMQTVTTGATPFRLNLHVGDVGHTLVFGPTGAGKSTLLAMILAQARRYCSRPQHDGTTLPMTITAFDKGRSLYALCAATGGRHYDIGSDDSPIAVAPLTEIDSDSNMLWAEEWVAICFELQANRAPSPQQKAEMHRAMRLLAQAPRENRSLTEFVTTIQDDEIRAAVSHYTISGAMGYLLDGQSDRVDLSPFTVFEIDELMKLGDKNAIPVLLYLFRRFEQSLKGQPAILSLDEAWVMLGHPVFRERLREWLKELRKKNCLVLLATQSLSDAVGSGLLDVLLEQCPTKILLPNKEADLRGTKDNPGPADLYQTFGLNQREIELLKNGQYKRHYYYKSSLGRRLFELGLGPLALSFVAVSDKESIAEIQLLQELHGVDWPLVWLDHRSVDYEKFVQ
>NZ_CP003181.2|WP_025286768.1|1520117_1520432_+|VirB3-family-type-IV-secretion-system-protein
MRKEHTLRQTRIHRALHRPQQIWGGERELMLFSMLVAGGLIIAAMNIVVTLIGTIMWLACVYGLRMMAKADPVMSKVYMRQLRYQEYYAPFSRPWRIDRIKRRS
>NZ_CP003181.2|WP_011632077.1|1532853_1533141_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVVVVTNAPPRLRGRLAAWLVEVRAGVYVGNYSARTREMIWRQVTEGLETGDAVMVWKAPTDQGYDFLTFGRNRRMPIDFDGLKLVTFLPEKSA
>NZ_CP003181.2|WP_011632078.1|1533137_1534085_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSKGSGIPGLAPPKLIPLKDRASLIFVERARLDVLDGAFVAVNADGTRTQIPIGGIAGIMLEPGARISHAAVSFAARTGTLIIWVGEAGVRLYSAGQPGGARSDKLLWQARIALDEAARLRVVRKMYAMRFGEEPPSRRSIEQLRGIEGVRVRESYALLAKQYGVPWKRRLYDPKDWDAGDIPNRCLSAATACLHGLSEAAVLAAGYAPAIGFLHTGKPLSFVYDIADLFKLETVVPEAFRIAGQAAKGRMDMGPDRAVRLACRDMFRRTGLLGRIIPAIEDVLSAADIPRPEPPPEAALPAFDEEKSGDEGHRG
>NZ_CP003181.2|WP_025286776.1|1534084_1534768_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYFSHLRLARNPSARALAVLLRPSESGGRASGERVSAQHHLLWSVFADSEERKRDFLWREERDGSFLTLSARPPLQSDLFQPHRIKSYAPDLAPGARLEFLLRANATRMKRGGKREDVVKAPIDALEQSERAERRMEIASSAGKAWLEQQGEKSGFRVITAIAEDYRQLSLPRPGATDRQAMKLGILDLSGHLEITDPALFLRNLPQGFGRAKSFGCGLMIIRRA
>NZ_CP003181.2|WP_025286777.1|1534769_1535444_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MQQPFLVFGLTASLGSMGELAGHERRGSLIWPTRSAIIGLMGAALGIERDGDFSALDALSIDVAIFDAGAPLRDYHTIETIPSAAAKNPNSRPEALRDARGRTNTTITHRDYRTSVFYGIAVRGAGLERIAAALLEPHFTLYLGRKSCPLAAPTGAKIIEVVSAEAALEHLKAPLWRKASVQAHLLVTDDPEGEVVTDVPLDRTSWHFATRRVGLRPVSIMAGG
>NZ_CP003181.2|WP_025286778.1|1535443_1536508_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFLQFHLLTTYGPSNPNRDDQGRPKQAIVGGVPRLRMSSQSIKRALRESTFFALDLADHEGKRTKRLYQNLVEHLLSNGVSEQKARSAADQVAAIFGKLEAPNKETKNRIGTTLAFISPEEWKLAEELAGKIAAGEKVPAEKELKKQVLRRADGAVDIGMFGRMLAGSSEYNRDAAVQVAHAITTHLAQSEEDWFSAVDDLNKSEDTGAGHLGETSFGSGVYYQYVCVNCDLLISNLAGDRELAVKGIEALAAALARTTPKGKQNSFAHHPLAHYILAEAGKQAPRDLSGAFFSPVRGERLLEQSVEALEKTRREIDDAYGKVWTSEQKLHVGKGGTLDEITAFVGATVRGA
>NZ_CP003181.2|WP_025286779.1|1536507_1537011_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSREEKGPGTIAFEWWAEYLEPRDPNTAARALSARLRRADPIKALCEPAVHQLAQALCVSGGERETEKLVRLACLLAEVREDDAAPLAHRLGGKEPVLSRGRFEKLIRAEGENLTDLMRRAIVMADRRCNVGALARDLWYWNDKTRTDWCFGYFHADAPKSDLKETV
>NZ_CP003181.2|WP_025286780.1|1537007_1538465_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSLNLIDDQWIPVLCADGSRRVIAPWQMAEPDVVQPDWPRPDLNIACLELLIGLVFLADPPVDGEDWEARRDADPQRLQEKLAPYAPAFNLLGDGPRFLQDLEPFTDEASSVDMLFIDSAGVQTAGNNADVMVHRSRYDRLDFPMAAMALYTFQADAPSGGRGNRTSMRGGGPLVTLVDPERMLWDLVWVNVPCGHPAKMETLPWMRPTRVSDTGQQTLPPDSALFGAEAFFGMPRRLRLTHAEGAVTGVIQKPWGTNYALWKHPLSPYYRLKSGTEWLPKHPRAGHFGYRNWLGVVVREKEGDLSELALCLREGRMGGGSILVAGWSMDNMKPRDFILSRQRRLSAMSEEAEYRIVNLIQAADAVAVALRNALTPVLAGGEAREAEREEFFLQTETKFLTHVQAIERGEDAADAWLTDLRRQALAQFDAKALPGLNQREVEAIGRITEARRYLGLALAGYGKQGGEIFKALGLPLPEKGKRKAA
>NZ_CP003181.2|WP_025286781.1|1538840_1541339_-|CRISPR-associated-helicase/endonuclease-Cas3
MQWKNWPGKSSVTPDGPEHPAAFHMLDVAAVAERLIEPFGVARPLRDALVVMTALHDIGKISESFRAMLREGVAQPGFRHWELSEVLFYVEDARIAARLGGTPLVRKMLYAAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVGEGREPAARLMDAFFDLWPEASLAGLTLAEATTLSWWLAGFCAAADWVGSNSEWFPPKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVREGDLFDFVLRPMQVACSTIPLPDGPTLAIVEDETGTGKTEAALILAHRFCQAGKGRGLFFALPTMATTDAMFDRASHIVGRMLDNPSVTLAHGRAGLSVPFRDLVQRSRTGGPEEITSSDWLAKSNRRALLADVGIGTIDQALLSVLPVRFQTLRMYGLSSKIIACDEIHEMGEPYIAEELTAFLKMHRAAGGSAILLTATLPMSLRSKLLATYDGASDNAAYPALTIAGGAAITQFQAEDRPVKGPVKVERLDTAADAVTFLSGMAVQGAACVWVRNAVDDAIEAVEALRAAGVEARLIHARFALCDRKRIEAEILATVGKNGKGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRAGRLWRHMDIRPASVRPVAGPVLYVLSPDPSVVEDERWLHGTLGKGAWVYAVADVWRSARVLFTQGQIGTSDRQRALIEAVYGTDAEPVPDALLKAEQDKYGKDSADRGLAWHNIVKFTDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTGTGLVPWAEGEGEDAWALSEVSAHRKRLDALPLTDQSSPEIMKITKNWPEWKRAQIRLCPVDEDGTICDGLHYDEECGLVFGSS
>NZ_CP003181.2|WP_081366662.1|1542082_1542526_-|cytidine-deaminase
MASGLRLDAAACPLDRADVELVEVARAVMRQHYRPLWHTVAAALRDANGRIWTGLHLGATVGRLQICAEAIALGRAKLEGAADIETVVAVRHPKQDEPDQDIAVVSPCGACREMFADFAPSTMVIVTGEQGLIKVPLALLLPLPYRR
>NZ_CP003181.2|WP_025286782.1|1542545_1543583_-|recombinase-RecA
MEKNKALDAALAQIERSFGKGSIMRMGARNVAEQIEVIPSGSLGLDLALGIGGMPRGRIVEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGSVNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQTRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQGRENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETAE

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Crispr_ID: NZ_CP003181_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_2

1541736-1542007

TypeI-E

Consensus_repeat	Method
GGTTCCCCCGCGTGCGCGGGGATAGTCC	PILER-CR
GGACTATCCCCGCGCACGCGGGGGAACC	CRISPRCasFinder
GGACTATCCCCGCGCACGCGGGGGAACC	CRT

4 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NZ_CP003181_2

>merge|NZ_CP003181|2|1541736-1542007|PILER-CR,CRISPRCasFinder,CRT
GGACTATCCCCGCGCACGCGGGGGAACCGAAATGCAACATAAGTGACGCCAGACAACACTGGGACTATCCCCGCGCACGCGGGGGAACCCTCATGGTAGGGGAATAACCTACCAGCGCAGGAGGACTATCCCCGCGCACGCGGGGGAACCTGGCATGGGTCAAGAGATGACGCGGAAACTCTGGGACTATCCCCGCGCACGCGGGGGAACCTCGCAGCCCAATCGCGGCCGCATGGTGGGGAGACCACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003181|2|2|1541736-1542007|PILER-CR
GGACTATCCCCGCGCACGCGGGGGAACC	GAAATGCAACATAAGTGACGCCAGACAACACTG
GGACTATCCCCGCGCACGCGGGGGAACC	CTCATGGTAGGGGAATAACCTACCAGCGCAGGA
GGACTATCCCCGCGCACGCGGGGGAACC	TGGCATGGGTCAAGAGATGACGCGGAAACTCTG
GGACTATCCCCGCGCACGCGGGGGAACC	TCGCAGCCCAATCGCGGCCGCATGGTGGGGAGA
CCACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003181|2|2|1541736-1542007|CRISPRCasFinder
GGACTATCCCCGCGCACGCGGGGGAACC	GAAATGCAACATAAGTGACGCCAGACAACACTG
GGACTATCCCCGCGCACGCGGGGGAACC	CTCATGGTAGGGGAATAACCTACCAGCGCAGGA
GGACTATCCCCGCGCACGCGGGGGAACC	TGGCATGGGTCAAGAGATGACGCGGAAACTCTG
GGACTATCCCCGCGCACGCGGGGGAACC	TCGCAGCCCAATCGCGGCCGCATGGTGGGGAGA
CCACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003181|2|2|1541736-1542007|CRT
GGACTATCCCCGCGCACGCGGGGGAACC	GAAATGCAACATAAGTGACGCCAGACAACACTG
GGACTATCCCCGCGCACGCGGGGGAACC	CTCATGGTAGGGGAATAACCTACCAGCGCAGGA
GGACTATCCCCGCGCACGCGGGGGAACC	TGGCATGGGTCAAGAGATGACGCGGAAACTCTG
GGACTATCCCCGCGCACGCGGGGGAACC	TCGCAGCCCAATCGCGGCCGCATGGTGGGGAGA
CCACTATCCCCGCGCACGCGGGGGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_025286785.1\|1546436_1547405_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP003181.2\|WP_025286788.1\|1549320_1549851_+\|UPF0262-family-protein	unknown	unknown	gnl\|CDD\|235077
NZ_CP003181.2\|WP_025286780.1\|1537007_1538465_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP003181.2\|WP_025286778.1\|1535443_1536508_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003181.2\|WP_011632088.1\|1544548_1545430_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP003181.2\|WP_125918898.1\|1547739_1548612_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286782.1\|1542545_1543583_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP003181.2\|WP_011632077.1\|1532853_1533141_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP003181.2\|WP_025286783.1\|1545565_1545979_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP003181.2\|WP_025286777.1\|1534769_1535444_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|378243
NZ_CP003181.2\|WP_025286776.1\|1534084_1534768_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003181.2\|WP_125918897.1\|1547495_1547738_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286779.1\|1536507_1537011_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003181.2\|WP_025286774.1\|1529393_1529984_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP003181.2\|WP_025286781.1\|1538840_1541339_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003181.2\|WP_011632087.1\|1543937_1544426_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|274523
NZ_CP003181.2\|WP_011632096.1\|1549931_1551020_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
NZ_CP003181.2\|WP_025286775.1\|1530016_1530580_-\|S26-family-signal-peptidase	unknown	unknown	gnl\|CDD\|172365
NZ_CP003181.2\|WP_011632078.1\|1533137_1534085_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP003181.2\|WP_081366662.1\|1542082_1542526_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|235875

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_025286785.1\|1546436_1547405_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.78459e-18
NZ_CP003181.2\|WP_025286780.1\|1537007_1538465_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.36966e-106
NZ_CP003181.2\|WP_025286778.1\|1535443_1536508_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.03403e-113
NZ_CP003181.2\|WP_011632088.1\|1544548_1545430_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	8.96582e-157
NZ_CP003181.2\|WP_025286782.1\|1542545_1543583_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP003181.2\|WP_011632077.1\|1532853_1533141_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.21924e-58
NZ_CP003181.2\|WP_025286783.1\|1545565_1545979_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.04655e-49
NZ_CP003181.2\|WP_025286777.1\|1534769_1535444_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|378243	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.	2.76077e-40
NZ_CP003181.2\|WP_025286776.1\|1534084_1534768_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.03779e-57
NZ_CP003181.2\|WP_025286788.1\|1549320_1549851_+\|UPF0262-family-protein	gnl\|CDD\|235077	PRK02853, PRK02853, hypothetical protein; Provisional.	7.84422e-81
NZ_CP003181.2\|WP_025286779.1\|1536507_1537011_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.70848e-18
NZ_CP003181.2\|WP_025286774.1\|1529393_1529984_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	5.32817e-77
NZ_CP003181.2\|WP_025286781.1\|1538840_1541339_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.54936e-119
NZ_CP003181.2\|WP_011632087.1\|1543937_1544426_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	2.42443e-52
NZ_CP003181.2\|WP_011632096.1\|1549931_1551020_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
NZ_CP003181.2\|WP_025286775.1\|1530016_1530580_-\|S26-family-signal-peptidase	gnl\|CDD\|172365	PRK13838, PRK13838, conjugal transfer pilin processing protease TraF; Provisional.	1.02094e-30
NZ_CP003181.2\|WP_011632078.1\|1533137_1534085_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.39352e-136
NZ_CP003181.2\|WP_081366662.1\|1542082_1542526_-\|cytidine-deaminase	gnl\|CDD\|235875	PRK06848, PRK06848, cytidine deaminase.	5.06475e-73

>NZ_CP003181.2|WP_025286781.1|1538840_1541339_-|CRISPR-associated-helicase/endonuclease-Cas3
MQWKNWPGKSSVTPDGPEHPAAFHMLDVAAVAERLIEPFGVARPLRDALVVMTALHDIGKISESFRAMLREGVAQPGFRHWELSEVLFYVEDARIAARLGGTPLVRKMLYAAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVGEGREPAARLMDAFFDLWPEASLAGLTLAEATTLSWWLAGFCAAADWVGSNSEWFPPKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVREGDLFDFVLRPMQVACSTIPLPDGPTLAIVEDETGTGKTEAALILAHRFCQAGKGRGLFFALPTMATTDAMFDRASHIVGRMLDNPSVTLAHGRAGLSVPFRDLVQRSRTGGPEEITSSDWLAKSNRRALLADVGIGTIDQALLSVLPVRFQTLRMYGLSSKIIACDEIHEMGEPYIAEELTAFLKMHRAAGGSAILLTATLPMSLRSKLLATYDGASDNAAYPALTIAGGAAITQFQAEDRPVKGPVKVERLDTAADAVTFLSGMAVQGAACVWVRNAVDDAIEAVEALRAAGVEARLIHARFALCDRKRIEAEILATVGKNGKGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRAGRLWRHMDIRPASVRPVAGPVLYVLSPDPSVVEDERWLHGTLGKGAWVYAVADVWRSARVLFTQGQIGTSDRQRALIEAVYGTDAEPVPDALLKAEQDKYGKDSADRGLAWHNIVKFTDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTGTGLVPWAEGEGEDAWALSEVSAHRKRLDALPLTDQSSPEIMKITKNWPEWKRAQIRLCPVDEDGTICDGLHYDEECGLVFGSS
>NZ_CP003181.2|WP_025286780.1|1537007_1538465_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSLNLIDDQWIPVLCADGSRRVIAPWQMAEPDVVQPDWPRPDLNIACLELLIGLVFLADPPVDGEDWEARRDADPQRLQEKLAPYAPAFNLLGDGPRFLQDLEPFTDEASSVDMLFIDSAGVQTAGNNADVMVHRSRYDRLDFPMAAMALYTFQADAPSGGRGNRTSMRGGGPLVTLVDPERMLWDLVWVNVPCGHPAKMETLPWMRPTRVSDTGQQTLPPDSALFGAEAFFGMPRRLRLTHAEGAVTGVIQKPWGTNYALWKHPLSPYYRLKSGTEWLPKHPRAGHFGYRNWLGVVVREKEGDLSELALCLREGRMGGGSILVAGWSMDNMKPRDFILSRQRRLSAMSEEAEYRIVNLIQAADAVAVALRNALTPVLAGGEAREAEREEFFLQTETKFLTHVQAIERGEDAADAWLTDLRRQALAQFDAKALPGLNQREVEAIGRITEARRYLGLALAGYGKQGGEIFKALGLPLPEKGKRKAA
>NZ_CP003181.2|WP_025286779.1|1536507_1537011_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSREEKGPGTIAFEWWAEYLEPRDPNTAARALSARLRRADPIKALCEPAVHQLAQALCVSGGERETEKLVRLACLLAEVREDDAAPLAHRLGGKEPVLSRGRFEKLIRAEGENLTDLMRRAIVMADRRCNVGALARDLWYWNDKTRTDWCFGYFHADAPKSDLKETV
>NZ_CP003181.2|WP_025286778.1|1535443_1536508_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFLQFHLLTTYGPSNPNRDDQGRPKQAIVGGVPRLRMSSQSIKRALRESTFFALDLADHEGKRTKRLYQNLVEHLLSNGVSEQKARSAADQVAAIFGKLEAPNKETKNRIGTTLAFISPEEWKLAEELAGKIAAGEKVPAEKELKKQVLRRADGAVDIGMFGRMLAGSSEYNRDAAVQVAHAITTHLAQSEEDWFSAVDDLNKSEDTGAGHLGETSFGSGVYYQYVCVNCDLLISNLAGDRELAVKGIEALAAALARTTPKGKQNSFAHHPLAHYILAEAGKQAPRDLSGAFFSPVRGERLLEQSVEALEKTRREIDDAYGKVWTSEQKLHVGKGGTLDEITAFVGATVRGA
>NZ_CP003181.2|WP_025286777.1|1534769_1535444_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MQQPFLVFGLTASLGSMGELAGHERRGSLIWPTRSAIIGLMGAALGIERDGDFSALDALSIDVAIFDAGAPLRDYHTIETIPSAAAKNPNSRPEALRDARGRTNTTITHRDYRTSVFYGIAVRGAGLERIAAALLEPHFTLYLGRKSCPLAAPTGAKIIEVVSAEAALEHLKAPLWRKASVQAHLLVTDDPEGEVVTDVPLDRTSWHFATRRVGLRPVSIMAGG
>NZ_CP003181.2|WP_025286776.1|1534084_1534768_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYFSHLRLARNPSARALAVLLRPSESGGRASGERVSAQHHLLWSVFADSEERKRDFLWREERDGSFLTLSARPPLQSDLFQPHRIKSYAPDLAPGARLEFLLRANATRMKRGGKREDVVKAPIDALEQSERAERRMEIASSAGKAWLEQQGEKSGFRVITAIAEDYRQLSLPRPGATDRQAMKLGILDLSGHLEITDPALFLRNLPQGFGRAKSFGCGLMIIRRA
>NZ_CP003181.2|WP_011632078.1|1533137_1534085_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSKGSGIPGLAPPKLIPLKDRASLIFVERARLDVLDGAFVAVNADGTRTQIPIGGIAGIMLEPGARISHAAVSFAARTGTLIIWVGEAGVRLYSAGQPGGARSDKLLWQARIALDEAARLRVVRKMYAMRFGEEPPSRRSIEQLRGIEGVRVRESYALLAKQYGVPWKRRLYDPKDWDAGDIPNRCLSAATACLHGLSEAAVLAAGYAPAIGFLHTGKPLSFVYDIADLFKLETVVPEAFRIAGQAAKGRMDMGPDRAVRLACRDMFRRTGLLGRIIPAIEDVLSAADIPRPEPPPEAALPAFDEEKSGDEGHRG
>NZ_CP003181.2|WP_011632077.1|1532853_1533141_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVVVVTNAPPRLRGRLAAWLVEVRAGVYVGNYSARTREMIWRQVTEGLETGDAVMVWKAPTDQGYDFLTFGRNRRMPIDFDGLKLVTFLPEKSA
>NZ_CP003181.2|WP_025286775.1|1530016_1530580_-|S26-family-signal-peptidase
MNAHRFAGGAWIVTTAIALIVGGSYSAGLRINMTASAPRGLWLISRIEAGSVRPGEMVSVCPPAQRVVIAMLRHGFIGPGNCLGTDSEPLLKPVAAVAGNTVIIRPAGLIEVNGMLLPNSAPLANMPAWPAGTYTVKPGQVWLISSYDPGSFDSRYFGPVPTANILGQAIPILIDGDAKRMALRPLL
>NZ_CP003181.2|WP_025286774.1|1529393_1529984_-|lytic-transglycosylase-domain-containing-protein
MFVDPALIQTCAPTVAPSTVQSIIQVESKGNPLAINVNGTKLARQPRDIVDATALATAYIKAGYSVDLGLMQVNSKNLSKLGYTISDMFIPCKNLSAGAQILTKFYTSGREQMIDPQIALRAALSAYNTGNFISGFRNGYVARYFAGSLLTKFGQFTAENKAQEKDDSSSYGQQIMNPYTANTVVYVRHEETILQK
>NZ_CP003181.2|WP_081366662.1|1542082_1542526_-|cytidine-deaminase
MASGLRLDAAACPLDRADVELVEVARAVMRQHYRPLWHTVAAALRDANGRIWTGLHLGATVGRLQICAEAIALGRAKLEGAADIETVVAVRHPKQDEPDQDIAVVSPCGACREMFADFAPSTMVIVTGEQGLIKVPLALLLPLPYRR
>NZ_CP003181.2|WP_025286782.1|1542545_1543583_-|recombinase-RecA
MEKNKALDAALAQIERSFGKGSIMRMGARNVAEQIEVIPSGSLGLDLALGIGGMPRGRIVEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGSVNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQTRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQGRENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETAE
>NZ_CP003181.2|WP_011632087.1|1543937_1544426_+|adenosylmethionine-decarboxylase
MNALNPLGMVSENPSENQNVTEAAAQANTQVSAAETEERKDYFVERDGMKFAGTHLLVDLWGATNLDDPGMIDVTLREAAVTAGATILHSHFHHFTPNGGVSGVVVLAESHISIHTWPERNFAAVDIFMCGACDPHKSIPVLRATFQPERIDLDEQRRGRVV
>NZ_CP003181.2|WP_011632088.1|1544548_1545430_+|polyamine-aminopropyltransferase
MSDQTTSSTGTWIAETLYSDWGQQFRVGKELARVKSDFQDIVVFESNSHGRVLLLDGVVQITEADEFVYQEMLTHVPLIAHGAAKNVLIIGAGDGGVLRRVLEHKTVERAVMVEIDGEVIRLSREFMPGISGNAWNDPRAEVIVGDGIDYVKKAADGSFDVIIVDSTDPIGVGEVLFTDDFYQNAARILTARGLIVNQCGVPFMQADELRETSLRRRNFFPRVGAYVAAVPTYVGGFMTLGFATKDADFTQADLETVRARAQAAGIANTRYWTPEVHVGSFYLPPYIAEQLPA
>NZ_CP003181.2|WP_025286783.1|1545565_1545979_-|RNA-polymerase-binding-protein-DksA
MVTLPPDYRPSEAEEFMNPLHVEYFRQKLLRWRADLLREADDTLASLSEGGIHEADITDRASVETDRALELRTRDRARKLISKIDQAMQRIESGTYGYCEETGEPIGLKRLEARPIATLSLEAQERHERMERVHRDD
>NZ_CP003181.2|WP_025286785.1|1546436_1547405_+|glycosyltransferase
MTDITLRARFAHDAKAAEEEAGQVFSTLMASSGQNSRIVIDGMSLPAFHHLPPSDLRCLTPLIHHPGAAGQRGDCPGPDMNVQQAEQTVLSAVSHAVVTLEQTRDRLIREYGVADAQISVVESGFTAYAPAPGTRNRDNSSPCAILSVGTLVKRKGYDVLLKALARLTDLSWQLTIAGNTQRDPAYVEMIREQAEQAGLSSRVTLLSCPGHGALQTLWDAADLYAQASWWDGPLSAALQSLRRGIPLAITASQEAAMKLPLNAGALCAPGDYETLSKVLRRLIFDDSLRKSYATAAWNFGSGLPGWDMQAQAFIHALPPTGF
>NZ_CP003181.2|WP_125918897.1|1547495_1547738_-|hypothetical-protein
MKPRRTRAASVVEETQDELLTPVRRAPRRSRSAEAPATQGKDTPAVKPRRGRKPSRPAEDSKKDSDLLDVLETSDPETLN
>NZ_CP003181.2|WP_125918898.1|1547739_1548612_+|hypothetical-protein
MLVTLRAVTRGVRVVAFVARVAGAFTVRGLRVTARVLAVFAVRAGVAARRVAAGVRAAVARGLVARVAGAFTARVAVRVVVARVDVALFAAGAFFTAEVVRVVLARVVFARADVARGVTARVFLVDATVRRLAVAVLAAGLRAVARVAVVLVAVMRFVAGVRLVAAARFVVVLAVVARVAGLRVVAAVLRVVVLLVAARVALTGVARVAVFRTDAAPVLVEAALVDGFLEVALVAVFVAVFLAAVLRVAVLAAPLLGAAVTAAVLRRAVVLRRVVTAALLRRVVERTAIG
>NZ_CP003181.2|WP_025286788.1|1549320_1549851_+|UPF0262-family-protein
MSAKQDDTQPIQAASKRLLKVILEGEALTRLSPLQEMDRAQAVADLEAENVFSLERPLPGMAPISEQGPYVLHLSIQEGRLIFDIRRQDDTFLTVLALALGPFRRLIKDYHLLVDSYVKAVQEAREARIQAIDMGRRGLHNEGAELMRHRLNGKISIDFETARRLFTLVCVLHQRI
>NZ_CP003181.2|WP_011632096.1|1549931_1551020_+|S-methyl-5-thioribose-1-phosphate-isomerase
MKIDGTPYRSVWVDDDGWSVRIIDQTKLPWSVDLLRLSRLDQVAHAIRSMQVRGAPLIGAVAAYGLCLALRDNATTDAMERAAVLLAETRPTAVNLRWAIDRMLARLRTTSEADRVAIAYDEAAAIADEDAAQNEAIGRHGLELIRDRVRPGQPVNILTHCNAGWLATVDWGTALAPIYMAHEEGIDVHVWVDETRPRNQGALLTAFELGKHGVPYTLICDNAGGHLMQHGKVDLCITGADRVTRNGDAANKIGTYLKALAAKDNGIPFWVALPSSTLDWSIRDGVKEIEIEERSATEVTTMSGRAMDGSVMTVRITPKDSPAANPAFDVTPARLLSGLITERGRCEASEEGLLSLYPDYRI

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Crispr_ID: NZ_CP003181_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_3

1579194-1579363

Orphan

Consensus_repeat	Method
CTGCTGCGGATTGCGGCAGCTTCTCGTTTTGCTACACT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP003181_3

>merge|NZ_CP003181|3|1579194-1579363|PILER-CR
CTGCCGCGGATTGCGGCCGCTTCTCGTTTTGCTACACTGCCACACCGCGTATCGTGCGCCCCCGTTTGGCTGCGGATTGCGGCAGCTTCTCGTTTTGCTACACTAAAACCGGTGCCCGTGATCGACGGGAAACTGCTGCGGATTGCGGCAGCTTCTCGTTTTGCTACACT

>NZ_CP003181|3|3|1579194-1579363|PILER-CR
CTGCCGCGGATTGCGGCCGCTTCTCGTTTTGCTACACT	GCCACACCGCGTATCGTGCGCCCCCGTT
TGGCTGCGGATTGCGGCAGCTTCTCGTTTTGCTACACT	AAAACCGGTGCCCGTGATCGACGGGAAA
CTGCTGCGGATTGCGGCAGCTTCTCGTTTTGCTACACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_025286818.1\|1578783_1579179_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP003181.2\|WP_025286816.1\|1577835_1578528_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286810.1\|1573005_1574094_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP003181.2\|WP_025286821.1\|1581054_1581426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_072632655.1\|1577604_1577784_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227786
NZ_CP003181.2\|WP_072632656.1\|1579658_1579952_-\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|310261
NZ_CP003181.2\|WP_025286817.1\|1578584_1578767_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP003181.2\|WP_025286812.1\|1574436_1574892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286825.1\|1587186_1587531_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226653
NZ_CP003181.2\|WP_025286828.1\|1589224_1589467_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP003181.2\|WP_025286814.1\|1576345_1576579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286813.1\|1574944_1576111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286826.1\|1588060_1588813_+\|phage-antirepressor-KilAC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377029
NZ_CP003181.2\|WP_025286827.1\|1588812_1589184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_125918903.1\|1576674_1577436_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286822.1\|1581489_1581822_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP003181.2\|WP_025286823.1\|1581818_1582073_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP003181.2\|WP_025286824.1\|1582145_1587116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379113
NZ_CP003181.2\|WP_025286811.1\|1574090_1574444_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_081371632.1\|1580305_1581055_+\|phage-antirepressor-KilAC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377029

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_025286818.1\|1578783_1579179_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.30674e-57
NZ_CP003181.2\|WP_025286810.1\|1573005_1574094_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.64985e-72
NZ_CP003181.2\|WP_072632655.1\|1577604_1577784_-\|hypothetical-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	3.00554e-14
NZ_CP003181.2\|WP_072632656.1\|1579658_1579952_-\|Arc-family-DNA-binding-protein	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.000252017
NZ_CP003181.2\|WP_025286817.1\|1578584_1578767_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	1.17457e-16
NZ_CP003181.2\|WP_025286825.1\|1587186_1587531_+\|transcriptional-regulator	gnl\|CDD\|226653	COG4190, COG4190, Predicted transcriptional regulator [Transcription].	4.7313e-17
NZ_CP003181.2\|WP_025286828.1\|1589224_1589467_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.09948e-05
NZ_CP003181.2\|WP_025286822.1\|1581489_1581822_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	3.53272e-49
NZ_CP003181.2\|WP_081371632.1\|1580305_1581055_+\|phage-antirepressor-KilAC-domain-containing-protein	gnl\|CDD\|377029	pfam03374, ANT, Phage antirepressor protein KilAC domain. This domain was called the KilAC domain by Iyer and colleagues.	2.33518e-27
NZ_CP003181.2\|WP_025286824.1\|1582145_1587116_+\|hypothetical-protein	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	0.0055778
NZ_CP003181.2\|WP_025286826.1\|1588060_1588813_+\|phage-antirepressor-KilAC-domain-containing-protein	gnl\|CDD\|377029	pfam03374, ANT, Phage antirepressor protein KilAC domain. This domain was called the KilAC domain by Iyer and colleagues.	2.73324e-24
NZ_CP003181.2\|WP_025286823.1\|1581818_1582073_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.87817e-08

>NZ_CP003181.2|WP_025286818.1|1578783_1579179_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRYPIVIERGSDTDAFGVVVPDLPGCFSAGDTFDEAVTNAAEAIALWVEDALDQGREIPHPSLLDDLRQQADWAAPEWIWGFASVDPALFDDTTERVNITLSRRILARLDSRAREAGETRSGFIAKMALMF
>NZ_CP003181.2|WP_025286817.1|1578584_1578767_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKSDDLIREMKKAGWTEIRSRGSHHIFRHPDHGHSVTVPHPKTDLGKGLVAAIRKQAGLK
>NZ_CP003181.2|WP_025286816.1|1577835_1578528_+|hypothetical-protein
MVSITAHVTEKGYLAQAEDPEKFMDAALGGLTRAANILQADLRMQTRAAGLGPGLERAWALNVYNDEPAALIYSKSEVLHRVFAEGTTVSATRKRYLAIPTKEAEAMGLGLTDRSRKGGPVPAGQYRHLARLDMIADKVGEKNIRVVSAPRGRKLIIYDVPGSSRKNARRGRTIRGVAGRSVSVLKGRSIVLFILVPQVRLARRLDVTAAEDRAALALPSEIETALSRLE
>NZ_CP003181.2|WP_072632655.1|1577604_1577784_-|hypothetical-protein
MMDPRPVETEADYDWALAAIEQYFDQEPAPGTPEAERFNMLAALIEHYETKAWPIGASE
>NZ_CP003181.2|WP_125918903.1|1576674_1577436_+|hypothetical-protein
MTIVTSARDLRRFTPAHYGDDPSAPVYMVAPLSWRDRARWRAAMAEGGASTYPTDEMILDAVKRAVTDIGPANLDELLSTVDAWRDYVTLITDAVKSVQQGETPDYPEAPAGLPDRYAAIETSVRAHPTVSHLYVQRVRWHDLAAPLLAAYGLRGWEGVPGNDGADLPFRRVQDTVPDDLLDRIPPRDLQAIGDEVWRLAQVGRADRGNSASPSQSPRDGRTSTSTDAVTHGQSSASPTSKTRVKSSRSKSGK
>NZ_CP003181.2|WP_025286814.1|1576345_1576579_-|hypothetical-protein
MSETIDILQAETQIERALQETRKFIAEREKLMAEREKLMAEAAKLDRDRKMSPIAILTSLLGVLIGAAVTIITQLVR
>NZ_CP003181.2|WP_025286813.1|1574944_1576111_+|hypothetical-protein
MARVIRRRNCVAAVGIETTQGVDVFGGSPSASTDFLRAEVDIAFNQNQVQNPEFTGSLDASPALPGGTRVTVTLTCLLKGSGSVSTAPQWGKLMRACGFLETVNAGIAAAVASDGDQTSFIPGSGFSKTDNVYLGQPFLLSLPGSAMDALTVANSSGGTGLVVPSQNYPGFVKGTTTAALLPNITYRPIVDPDAIPSLTIYVYMDGIRYKFTGARGNMTLDMQTAGIGTLKFTMNAQYSPSDQAPIPSGIVFDAPQPPIFRNGIARAGRKQIRIARFSFDGGLTVVNPDNPEAGEGFDPAEITVRASTGSIDPLMSITDTAVRIADFKAGNRTSIAIGTGSVAGNMFGITVPAAQFTGVTFQNRNDLMAESYNFGCTGSNLGVILCQY
>NZ_CP003181.2|WP_025286812.1|1574436_1574892_+|hypothetical-protein
MADIPPPSIREQVIVSIFDILRTALPDVRVMRESRADPAVEDAPWLTLLDSGHQAGYDQSGLVTYTLSLGLDGGVAATSDGQLGPALNALYARIISAVMADPGLGGLATGIEESSLSTRQVTAGESTEPLIVFSLDLAVTFLTADGNPWAA
>NZ_CP003181.2|WP_025286811.1|1574090_1574444_+|hypothetical-protein
MSDALLSAVRAIWDDPDGGVMGLYRSEDAAPPVAVRAAFLNPTDPARLSGVAPVLASSTTVRVLTQDIGDKPSKKASFEVSGRRYRVAEVEQDARGLWWDITLTTQSDAASGATSNG
>NZ_CP003181.2|WP_025286810.1|1573005_1574094_+|major-capsid-protein
MPTIDIFRSDAFSLIEMSAYVNRTPYAPTGLGLLNIFDPTPLRTTILSVEEEDGVLGLVPVTERGAPTVELTRSKRRLRGAFKIPRLAEGSTINSADIQNIRASNTATELQQVQDEVVRRLDGPGGIRQRLEMTREYMRLGAIRGQLRDAPTPAQISAGQPGDLIYDWYNEFGIATPAPIAFDLKNTTADGKRPGYLRRQCNSVVRSMQRAAKGAWLPSTQLYAMCGDAFWDELTTHPDVEKTYLNWASLQDGATRLREGTAFDAMSFGGINWFNYRGSDDGVIGLAQDQVRFFPVGAPGVFQEAMAPGEGMDAVNTLGQKEYAMVVVDPERNFWARPEVYSYPLFICTRPEMLLSGVMGAS
>NZ_CP003181.2|WP_072632656.1|1579658_1579952_-|Arc-family-DNA-binding-protein
MAKTDQIHLRLPPDLKSRLEAEATKENRSLNAEIVQRLQGSFEEIIPTYFHTRDIARRFEEMIQSRMDNMDAIIHKAFDEYFKKNPKYKDFRENKHK
>NZ_CP003181.2|WP_081371632.1|1580305_1581055_+|phage-antirepressor-KilAC-domain-containing-protein
MATINTNMPTISSAIFNGAGLTMSSREIAELCEARHNDVVATIVRLFDQGVLRESRKTTRTVAPEGGGRPTQVYDLTKRDTLVVVSGYSAELRAKIIDRWQELEGAMQSHMLALPRDFASALRALADSTDKVQALEAQNAELAPKAEALDLISASNGSLTITQASKLLSVKVAELTRWMNANRWIYRQNGSWLAYMDQIQNGRLEYKEANYTDRNTGMACCKPYCHITPKGLAKLAHELGVSAPGGEMH
>NZ_CP003181.2|WP_025286821.1|1581054_1581426_+|hypothetical-protein
MTISCFALATELRGLNRQYGDLDEESVRFAPQSAERQTINDAMQALFHRMEAIQALILATPAERLADVAAIVMIAANEISINRFFEPDEDGLLQIERSLRSVLGIIAENAGINLSDIGIENYA
>NZ_CP003181.2|WP_025286822.1|1581489_1581822_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MSNMMTYKGFSARIEYDDDDGIFFGQIAGIRDGVGFHADTVQGLRAAFHEAVEDYLDVCKKTGKEPQKPYSGRMMFRVSPDVHRRAAIAAELSGKSLNQWAEDVIANAAR
>NZ_CP003181.2|WP_025286823.1|1581818_1582073_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MNSKQRKTLEVVFKDPVSGTIEWAAIESLLVAVGCRAIEGNGSRVRFEKDGEIESFHRPHPTKEAKRYQVRATRAFLIRLGITL
>NZ_CP003181.2|WP_025286824.1|1582145_1587116_+|hypothetical-protein
MATRNISTRLSVEGASEAKAALESIGVAAEATGARMAAGLGRAGQAGQDVTPALASAGAGAEKLAAAFEKAAASADPYSIRMAKARDMLQAVTAAQAAGVAPSERAATVTALLTNRLDQLHQAQMRALGVVEQVATTNQRAMASFGGMGNVIHQAGYQVGDFAVQIASGQSAITAFVQQGAQMLGVFGTWGAVAGAGLAIAGAVLHLVEASSDAKKAGDELSTVLETHQREYSAAKEAAEDYTHGLVHQAEAMESLANRFASLDDAQKKFETARLAAEFRALNDQLERQNKALSDAAQKTLDSSSLYRASQQPGYRTGAAPQTDALAAAGQAVEDFRLGDGSLGSLQSLYTTLTDLAQIGGKAGGVIGDLRDQVGSAVDPARKLDDSLAEVGRRGDALTGSFDDATLAVRAFREMMAETGDSIATRMERVQAQARALQTGGLDALKLAQKSAVADEQADRLSKEDMQASVKALQDQGYSEAMAMEAIVKNRDYFTSQAKSYVDQQNKLNADIAAAEKKRASDARASRQSATADRAADRADLRSDNTVSALEGQISSLHQLTVAYHEGDAAIAGITAQQKANTDALKYGREGTAAYAAEYQKVLPLYQQVAEAEQTLALAKKNAADQSSLDYIEAETRTLGMNDAERSKMLSHMKLEAEFRAQGIPLLSDEAQKRIALTDRIIEANGVLARQQAAFNELQSFGENTFNTIGTAITQAFATGKLEAVSFKDIAMAALSSIAQEALKLAVLNPLQNWLLGTDKTDLGGVLGTLLGSASGGGSVSSGGGYATYVAGATGLAGMLLSLGGDDMAATATHHAATAAGSAGSTLGTISAVGKAAGGGDFFDAVGTGATAVGILDKGYSLLNGSKEAVTTSTGLLSYLGSAVKPLTSIVSGVAGTLTNLNTLVAGTVANGINALLYPGAYAAGQIGATAAGIAPTVVTGGISSAGYLGGAASTAANTANAAGAAGGVSASTIAAAIPWISVIVGIAIPLIKGDLESAGIVAASAGLGAIAGSFVPVIGTAIGAALGAAIGGIITMFTADHPLSPYTQVDILNKNGRLAIGHTGQQIAEEQLDADKTGAQTGIEQVNKMLDFLQLKIANTGDTQNNIAGERVGIVGTGLDESIKAVRSIGDLFPYLRFAANNADSNYARAATAQLKDQSYANPQALAEELQKIASFADGLNALGIHLDTMDRDFKNLRIGMADRVDGSNFSVALAHDLPGRSFADRDALQQEIQKVFQFTEGTLPSLLSWNGRAQSQFQQQMEQLNKVYADASSQALAYGLTLNGLGDKFAQLQRQMYDEQLLAFRQSDAGVTARYLSATGNDRDAALISYDVKAAQENAALKKAWQDVFGDAATSMAEYQQQAANLDRTHYAERLKMQQTYDEQTKASAEQSKAAAEQALSSWRQVNATGLSFVTADWRAQVAIATANDNSVGTTKWARQLSQAADLADFDQNASSQMISYKASLQALYGAGYATNADYAAQITRAEKSLAEQRLAIVANYAKQAKQAEEQAAGQVSNVVVSLSDYLKTLKTGENSPLAPRAQYDAALTQFNSTAQAAQAGDYTSLTHLRDAAESYRSMAAIVYGSGQGYADAVSRIADVLGHISEVPTDTLTSSAMDAIAKTNAQTIVTAVSDLKAEVIALRRQMQTGQMKIA
>NZ_CP003181.2|WP_025286825.1|1587186_1587531_+|transcriptional-regulator
MRTVTLGISSLEDTKRRASAAFRGERVGEFISFTSVDLLWRILTAKRWDILKAMTGQGAMAIREVARRVGRDVKAVHGDVQALLVAGVLERTEDGLVVFPYDAVHVDFTLNKAA
>NZ_CP003181.2|WP_025286826.1|1588060_1588813_+|phage-antirepressor-KilAC-domain-containing-protein
MPEAANELTISAGFFTQGGPLTMSSREIAELVEKRHDNVKRTIDSLVAAGLVHPQIEDEPENDALGRARITKVYRVGKRDSYVIVAQLSPEFTARLVDRWQELEAQAQSFDPSKIFENPAVMRGLLLAYTEKVMALEQANAQLTPKAEALDLISASNGSLTITQASKLLSVKVAELTRWMNANRWIYRQNGSWLAYMDQIQNGSLEYKEANYTDRNTGMAVHKPYCHITPKGLAKLAHELGVSAPGGEMH
>NZ_CP003181.2|WP_025286827.1|1588812_1589184_+|hypothetical-protein
MSISCFALATELRSLHQQYGDMDEQSVRFAPRSAERQTINDAMQALFQRMEAIQALILATPAERLADVAALVMIAAHEIGMNRFFEPDEDCLLQIERSLRGALGIIAENAGISLSDIGMSHYS
>NZ_CP003181.2|WP_025286828.1|1589224_1589467_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRYAYIARLTQEEGGISVSFPSVPEAITWGESEAEALSHAADALMTALSMYVDDGRTLPVERDEPTQDTVMITVTLPEAV

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Crispr_ID: NZ_CP003181_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_4

1604512-1604610

TypeII

Consensus_repeat	Method
AGTGTAGCAAAACGAGAAGCGGCCGCAATCCGC	CRISPRCasFinder

1 spacers

cas9

The CRISPR arrays of NZ_CP003181_4

>merge|NZ_CP003181|4|1604512-1604610|CRISPRCasFinder
AGTGTAGCAAAACGAGAAGCGGCCGCAATCCGCAGCTGCGCGGTGTCGCGCGTGTGCCTGTCAGCCAGTGTAGCAAAACGAGAAGCGGCCGCAATCCGC

>NZ_CP003181|4|3|1604512-1604610|CRISPRCasFinder
AGTGTAGCAAAACGAGAAGCGGCCGCAATCCGC	AGCTGCGCGGTGTCGCGCGTGTGCCTGTCAGCC
AGTGTAGCAAAACGAGAAGCGGCCGCAATCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_051496891.1\|1596543_1596744_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_038515553.1\|1606944_1607445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378701
NZ_CP003181.2\|WP_125918905.1\|1595833_1596076_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286840.1\|1598391_1599039_-\|S-adenosylmethionine-binding-protein	unknown	unknown	gnl\|CDD\|227069
NZ_CP003181.2\|WP_025286849.1\|1608726_1609671_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP003181.2\|WP_051496892.1\|1596760_1597306_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226439
NZ_CP003181.2\|WP_164504164.1\|1623021_1623903_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182283
NZ_CP003181.2\|WP_125918906.1\|1597826_1598234_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_125918909.1\|1623945_1626024_+\|calcium-binding-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_051496894.1\|1607664_1608705_+\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
NZ_CP003181.2\|WP_081371634.1\|1601156_1604207_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP003181.2\|WP_025286842.1\|1599888_1600470_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP003181.2\|WP_025286845.1\|1605083_1605530_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP003181.2\|WP_125918907.1\|1610555_1622225_-\|Hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|372590
NZ_CP003181.2\|WP_025286839.1\|1597321_1597729_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025286837.1\|1596088_1596496_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_095532115.1\|1605699_1606917_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP003181.2\|WP_025286841.1\|1599022_1599892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370355
NZ_CP003181.2\|WP_011632109.1\|1609728_1610202_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP003181.2\|WP_025286857.1\|1626084_1626567_-\|GreA/GreB-family-elongation-factor	unknown	unknown	gnl\|CDD\|180535

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_038515553.1\|1606944_1607445_-\|hypothetical-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	0.000153224
NZ_CP003181.2\|WP_025286840.1\|1598391_1599039_-\|S-adenosylmethionine-binding-protein	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	3.4909e-40
NZ_CP003181.2\|WP_025286849.1\|1608726_1609671_+\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.93645e-28
NZ_CP003181.2\|WP_051496892.1\|1596760_1597306_+\|hypothetical-protein	gnl\|CDD\|226439	COG3926, zliS, Lysozyme family protein [General function prediction only].	1.44257e-30
NZ_CP003181.2\|WP_164504164.1\|1623021_1623903_+\|hypothetical-protein	gnl\|CDD\|182283	PRK10172, PRK10172, AppA family phytase/histidine-type acid phosphatase.	1.22487e-16
NZ_CP003181.2\|WP_051496894.1\|1607664_1608705_+\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.2877e-16
NZ_CP003181.2\|WP_081371634.1\|1601156_1604207_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	9.93316e-72
NZ_CP003181.2\|WP_025286842.1\|1599888_1600470_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	7.32293e-44
NZ_CP003181.2\|WP_025286845.1\|1605083_1605530_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	1.12568e-26
NZ_CP003181.2\|WP_125918907.1\|1610555_1622225_-\|Hint-domain-containing-protein	gnl\|CDD\|372590	pfam13403, Hint_2, Hint domain. This domain is found in inteins.	1.86789e-61
NZ_CP003181.2\|WP_095532115.1\|1605699_1606917_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	7.97419e-120
NZ_CP003181.2\|WP_025286841.1\|1599022_1599892_-\|hypothetical-protein	gnl\|CDD\|370355	pfam09195, Endonuc-BglII, Restriction endonuclease BglII. Members of this family are predominantly found in prokaryotic restriction endonuclease BglII, and adopt a structure consisting of an alpha/beta core containing a six-stranded beta-sheet surrounded by five alpha-helices, two of which are involved in homodimerization of the endonuclease. They recognize the double-stranded DNA sequence AGATCT and cleave after A-1, resulting in specific double-stranded fragments with terminal 5'-phosphates.	8.34067e-43
NZ_CP003181.2\|WP_011632109.1\|1609728_1610202_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	2.90671e-43
NZ_CP003181.2\|WP_025286857.1\|1626084_1626567_-\|GreA/GreB-family-elongation-factor	gnl\|CDD\|180535	PRK06342, PRK06342, transcription elongation factor GreA.	2.65916e-39

>NZ_CP003181.2|WP_081371634.1|1601156_1604207_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MGNGRAFFPEARVSDGTPLNQTRRQKRLARRQFRRRRQRRRDLNMLLSQHGLLPSFSKERNSEWAEIMKSPPLALRAKGLTEALSPFELGRAFYHLAQLRHYKGREIEEDKTRETEESADEKKAKPGRDQTIQTLKKSGLTLGQMLAEDAPADGEMPTARTRGIHALRSHVEDEFDRLVTAQAPHHPILCDIAFMARFRDTIFAQRPVFWRKNTLGQCRFIPGGPLCPKGSWLSQQRRMLEKLNNLALVGGNMRPLDDEERAVILDKLQTQASMSWAGVRAALKPLYKKRGEPGEEKTLRFNLELGGEAKLLGNTVEAKLVGVFGDAWNDHPHKQAIRDAIHERLWKADYGEIGEQRVVILSEDERRERRTAEAKRFVDDFGISQQEASALADLKLPAGWEPYSIDTLKAFLPRLEEGVRFGALTMGPEWADWRKANFPDQQQPTGEILDRLPSPADRDEQKRQATIRNPTVIRVQNELRKVVNNLIGAYGKPDLIRIELARQIGLSKYERKKMKEGIDKQEKRRKEAEDDLQKKGISPPSRADVEKWMLWKESQERCPYTGDQIGFGALFGTREFEVEHIWPRSRSLDNSFRNKTLCRRDVNLAKGNRTPFEFYQGSPDAWSAITGRLQNLVARKGSPGIPLAKVKRFLATSMPDDFASRQLNDTGYAARQAMAFLKRLWRDVGPETPVRVQAVTGRVTAQLRRLWGLNNILSEDGEKTRADHRHHAIDALVVACTDPGITNRLSWYWQQKDDQTAECPHLPPPWPGIRDEAERTVAAIIVSHRVRKKVSGPLHLETTYGDTGKDIVRNRVKYRQFVTRKPIVSLTFKQLEAIRDGHIRKTAKDWVATNGGDPKKAFGSFPKNSPDGPEIRKARIIVEQQPGLMTPVSTGYASTDNNHHLAIYRSEDGKIDWKIISMIEAARRLARQEPIVSKSLPNGSRLVMSIALGDTIRIDQGDKAGYWVAKALSANGQIFFRHVEDAIGATKWGPKANTLLKEGAKKVSVDPIGRVRPAND
>NZ_CP003181.2|WP_025286842.1|1599888_1600470_-|recombinase-family-protein
MFVGYVRVSPLDQNPALQIDALKAAGCERIFIEATSGTNLDGSQLEAALGYMRAGDTLGIWSIAHLARSFHQLIKVVKKLEKAGIGLRVLQQAAIDTTMPHGQLIYQIFGAFAEFEKALITERTQMGLAAARVRGRRGGRPAALGEEEIRRAKAMLADPQMSVGEVAQQLGITQSTLYRHIPGGRSALASGPA
>NZ_CP003181.2|WP_025286841.1|1599022_1599892_-|hypothetical-protein
MSDKAIHEDKGVIVADDTDGSDLAEEIAREEVAFAPNEAADAQQLVDSKIPQDIRDRYEIYSYRNAAVILSESRADEFNEILQALRDFSITTTMIRTAGGNESDIPKMFSKTLRPLGWHETIVQGDLLVQLVWREQVGIGKTGKPIVERRQREIRRAKYLDGHKIDYVKGKVAFDLEWNSKDQTFDRDLYAFSAFAQCGVVDAAVLVTRSASLNKVFRGVGPALKKDGTAEKKKSGADRPTMEKYGASTTWMGKLLYRLNAGRNGGCPVLAIGITPACVSDWNADDEAA
>NZ_CP003181.2|WP_025286840.1|1598391_1599039_-|S-adenosylmethionine-binding-protein
MTKQPDPIAEFRNQLNGGNFATVLADPPWRFQNRTGKMAPEHRRLSRYGTMELPEIMALPVSEVTAKTAHLYLWVPNALLPEGLAVMQAWGFNYKSNLVWHKIRKDGGSDGRGVGFYFRNVTELVLFGVKGKNARTEAPGRRQVNLLATQKREHSRKPDEFYDIVEACSPGPYLELFARGTRPGWCAWGNQAEEYDITWDTYSHHSQRQSLWVAE
>NZ_CP003181.2|WP_125918906.1|1597826_1598234_-|hypothetical-protein
MQKVLISFLVIFSLLCSWYWGLQIPSWAVGILGVISGLVSADLWLKSVKEEHNKKYNILAAVMSAAAVSFSLNIISFGPVNGKFAIYICKIILFIKLVALGYGLLFMFSTFLCLLPFSFGDYFWNILYKNVLKNK
>NZ_CP003181.2|WP_025286839.1|1597321_1597729_+|hypothetical-protein
MDWTPITNAAAQTGAEIVTTIVIPLVLAWAARRWNLNTQWTSAIQQASGAAYAAAVATGRPITDPVARGAAVAAGVEYLRDRVRPAVLASAGIKSVPAAEAAVEAGLGQLLARDPSVTVGSNNVPTNTVYGHQSK
>NZ_CP003181.2|WP_051496892.1|1596760_1597306_+|hypothetical-protein
MSFEQALTLTMSAAIEGGYTRSATDPGNWTGGRVYAGQLVGTNHGISAPVLSAWLGRTATETEMRALTRDEAAAIYQVRYWRACACDRLPPSIAGLIFDAAVNQGEGFAPRLLQQALSVPADGQIGPLTLAAAVRADPADLHAEIARLRAERYRASTDWPRFGTGWLRRLMRVVAATASFS
>NZ_CP003181.2|WP_051496891.1|1596543_1596744_-|hypothetical-protein
MNVRLPVRGSMDQARETGLQLARAGGGAWMIARPVVVRVGMLMIRGAGDGRHGNDAAGYRADRRGT
>NZ_CP003181.2|WP_025286837.1|1596088_1596496_+|hypothetical-protein
MDSSHGDHPLVARVEKLTPRAAAWLVAALVSCGVPTATFLLSREKESVVTHRDADDVRSRLAAVEDARKLENASERLRDLEEKLLEMRGAIDRAAQERAALSEKYHALDRFLAGLAIQVDAATQEIREMRHRGGR
>NZ_CP003181.2|WP_125918905.1|1595833_1596076_+|hypothetical-protein
MSFLLGASAPASYAELCVMPCIAQDGTVQPSGTVLNRAVWVVPPATDGITEWQPDRGQPLYLPELPASPPPDDPDDPASR
>NZ_CP003181.2|WP_025286845.1|1605083_1605530_+|DMT-family-transporter
MNSAWLYPLILIAGALQAWGPPMNGALRVSLINPWLASIVSFLPILAALLVLWLCMPRPMPTVEGIAAMPWWAPLGGLIGAFAVVAGLMFVNKVGAGTFAGLTITANILMSLAIDHFGLLHVTPHTMSPLRMLGAVLMVSGIALIARF
>NZ_CP003181.2|WP_095532115.1|1605699_1606917_+|class-I-SAM-dependent-methyltransferase
MHWLLNRILTRIVRSGHLEVRFSDGEIRQYGAGSSPSASMVLRSPQAERRLTLNPMLAMGELYMEGELETPGCTIYDLLDVLTRDCLNTGQPWIIRLFNMLRQARKRLDQFNPAGRSRRNVAHHYDLDGRLYAHFLDQDRQYSCAYFPTGQETLEEAQRLKKRHIAAKLKLDRPDLDVLEIGSGWGGMALHLARNHGARVTGLTLSTEQLDVSRQRAAEAGLSDRVRFELMDYRAWRQPADRIVSVGMFEHVGIGHYQTFFETIRDRLRPDGIALIHAIGRAEGPGATNPWIAKYIFPGGYSPALSEVLPAVEKSGLWTTDIEILRLHYALTLSHWRQRFQEARPTITSLYDERFSRMFEFYLAGCELAFRNMGHIVWQLQVSKSLTALPLTRDYMFEAERQAEG
>NZ_CP003181.2|WP_038515553.1|1606944_1607445_-|hypothetical-protein
MPVLQQWRRKAVPITPILALMLSGLLVGCTYDSFGYNGVYVPMPAVAQTTGPEAGKGVVTGAGGSPFAQPQPASVPVYDGTAYPPAYPPAYPPAYGGYAAPYLAWTIAAATVFGATFGGGWGVAYPYYRGWGWGWGWGGVPWGWGYPGFGWQQWGWGGPYYRSFGW
>NZ_CP003181.2|WP_051496894.1|1607664_1608705_+|YncE-family-protein
MYLLALVSDPSILDGFMISRLARFFLLIGLTLPGAVSHPSTAQAEGLAFVINSNDATISLIDITSRQEVKRIPVLREPHHMALTPDEKSLLVGDTAGNTMFFLDPLTGAEQKRIVFSDPYQIQFSPDGRWLVSAALARDQIDIYDGHSFKLLHRIQAPSMPSHINFTPDSKVAFVSLQKTSKVVAFSPETGKILWEQKSGRTPAGVLYLNGKLLVGDMGEDTITVMDPVTGKLERKIRTGKGAHNLFLSPDGKVLYVCNRVGGTISLLDPATLTVKKEFAIPGGPDDLDFAPDGSIWATRRWAHTVAIINPKDGSFTTIPTGRSPHGIWLNTHLAAPVRAASTRAP
>NZ_CP003181.2|WP_025286849.1|1608726_1609671_+|sterol-desaturase-family-protein
MFDPFDSAAGWLQEHLLIPLLWQFNLIEWEDVSYGWALIAMYGVAQVILMYAICVPLEKWRPVERWENNHAVLTDVLYTVISRVGVLPLVSFVGFYQVQVLLNGWLTDHGYVPPTLERFIPSLTGHPYVTFAIYALILDCADYWRHRLSHQFRWWWALHSLHHAQRQMTFWSDDRNHLLDDFISALWFGAIALMIGVPPLQFPLLVLLLRLIESLAHANARISFGRIGDRLLISPRFHRAHHGILAAGQRSCNYGAVFPYWDMLFGTADFSRVYVRTGDPSGEEALHTGTYVQQQMAGLRRFIRSLRKKKPQPS
>NZ_CP003181.2|WP_011632109.1|1609728_1610202_-|SRPBCC-family-protein
MLKRVVVPAVLASLIATPALAVDVTKSIHIAASPAKVWSTIGKFCGIATWHPAVTKCELVDVAGAEQRTLSLKGGGTIVEQQVDRNDAKKSYTYTIQESPLPVANYKSTISVTPAKGGSEVTWVGHFDAKGASDAEAAKVIAGIYEGGLAGIAKKAK
>NZ_CP003181.2|WP_125918907.1|1610555_1622225_-|Hint-domain-containing-protein
MSNLTSTTSGVILTNAYTNPIDINPGVAVSNTNGVGVASALTTLWTINNSGAVSGTTTGISLAGGGLINNVTAASIGGGSGNAAYWGIQMGAQGTVINSGSISGAGGIFAGNSSSITNNLSGVIRGLDVNFGVTVSTNGTVVNAGSIIAATDAVNLGGNNNYLSNAGSIVSNNAGNSGAYLNGSGNYATNSAGALIQGGNFGLGMYSGTIFNSGSINATNSPGGRGVTIFSTDTINSLNNTGRITSADSAVYMGAGNINNTGTIIGTSIGVIFTVSGAGAVFGNGTITNSGTVTGGVFGISSAGSLFVSNQVGGYISGATRAIIGSGGASISNSGTIIGGNGISIGGDIVIVTNNSSGLIQATDATRFAINASGTTNNTIVNSGSVTATNDAIHIYNIGSLYNSGKIISQSTSNAGAYLNGNAANYATNSSGATISGGWAGLGMDTGTIINAGTLIGNNATYGKGAVILNADASNRLTNSGLITSASTGVVMAAGSLTNTGASATIVGDSIGVQFTGTTLVQSILNSGTIKGGAFGITAAGNANITNQVGGYISGGTTGIVSALAGTVANYGTIIGSSGPAIALQGNGINLLQLGVSSQITGSVTANNAGTNTLEFLSGASVGTISGIGTQYLGFQNATVDAGATWTINGGGSFNSFTTSGTVTNAGLLSATNGVVIAGTGVFINATGASVATTGNQYAIWSTGTGSTFINSGTVISTNAVSLSGNAVITNNAAGKIQATGNNFGVTSSGAGNVVTNIGGITAQNDAVNLGGYNNSLYNSGSILSSNINNSGVYLNGTGAYATNSVAGSIQGGAFGLGAYSGTINNAGTINATNTQFGMGVNIYTVDSFNEVNNSGTITSKSTAISMGGGVVNNTAATAYINGTYAGIIFAGVTNGSTTLVGNGSVNNTGTILGGNIGITSVGSISVNNSGIISGTNQGIIAAGTIFVTNQAGGTISGANNAVSGSTGTISNAGTIQGNGVTLLSGNGGFVTNSASGLIQSSNNWAVQINNGNNTVNNAGKITGSGDGVHLGGNNATTLTNNNTLINTGTIQGGGVGSNGAALDGYGNTATNSGLISGGNAITMGAGGINNSGTITATNPNGGLGVSIQDVNVTNSLVNTGAISSVGTGVLLGAGSVQNNGTSAAISGANYGILFTGTSIVTDSVTTVVTGTVTNSGTILSGNNAISAAGAVAVSNLSTGLISSAGSFGIQSALSATVNNSGTIQANNYAISAAGSLIVTNQVGGTISGSSRAIFGSAGANIYNAGLINGGGISLSSGGGTFTNIAGATVQATLVGADFAVKFDGAGNYVRNDGTILGLSDAVNLGSTLVASAVGNNTLINTGLLQTQGTYTSGAFLHGTGNYISNAASATVIGGGWGLGMDSGTIDNAGLVTVALTSTGKGLAVFGTNGAVNNTGTVTSQSTAVVMGGGTLNNTASAAVISGNSYGVQFISASASGVVVNSGTIQGGVFGISVAGNAIVTNQASGYISGGSTGIVSSLPGTVVNSGTIIGSSGTAIVMQGTGANLVQLGVSSQITGNVTANTAGTNTLELLSGASTGVISGIGTQYIGFQSVTIDSGANWAINGTNTIAQSASLINSGSISVASNLTIAGSMSNVSTAKLAGNVALVSNGTITNAGTINGQINGGGTNAVLLNTGTVLQTGTIAVSLGSGGTVTNSGLISNAGGTAVYLGGTGTNILNLNNSVGIVGSVIAAGGLNRLNMFGGQAGNLPTISGIGSTIVGFNQITAASNAKWNLTGSNSIDSTVTFAANSATLTNTGTFTGKINLGFSSTLSNVGVLNPDSTGTVVSMGVSSNRLILVPTAVLSGTVNAQGTLNYLELASGSTTGTISGIGTQYVGINTQIDQNANWVMSGTNSFVPGLTLNVMGTLINRSTLVSTGSIINSGFIVNSSAIYGGISFVGSGAITNAVSSAIINSNGAAISGQASSVTNAGTLIGHRSGTTAGYGISFQAGGTIINTGGVTGDDTGIIISGAAGTITNIGAITGVTSYGIGLLNGGYVSNASGVVISGGLIGIYATGAAATIVNDANASIAGTSGSGVAINLQAGGTITNAGSIGGAGGTAVIFGGSGQNLLQLLAGAQFTGLVMGGTTAQNTLSLLSSSNAGVISGIGTSYTNFQNVTVGSGASWSLSGSNSIAAGYTVTNSGLLTNAGVFNNSGTINNTTVGTLSGGVTLSNNGLLINSGSVIGTIVGSGSNNTITNYGTVTPAGATAIAMGGAGINLLQLGVRSQINGVATANSSGTNTLELFSGASAGTINGSNFVGFQTGSIDAGAVWTISGNGNFTSLVNNGALTNQGSLSAAQGIILNTSTASLTNANTATISNAASNLYAITASGSGGVINNSGTIQALGIGAVGAITLLSFGTITNNASAQIISNGTGFVVNIGGTNNYVQNAGLIKGGSDAVNLGGNSTLINAGTLQTTGTATSGAFLHDSGNSISNTGLVLGGGFGLGMDGGTINNAGTIIASNSTFGRGATFFLANASNQLINTGAISSASTAVIMGAGTIQNTGTSARISGAAYGVLFISSAAAGNVQNTGTIQGGTYGISAAGSLNVTNQLSGYISGNIGIIVQQPATINTNGTIIGSSGTAIAMNGNGSNLLQVGVAAQISGVATANIAGNNTLELLAGSSAGTIRGSQIVGFQTGIVDTTATWTMSGNNTNFTSFTNNGNLTNTGTLAATNGIIIVGSGVIQNAITSSITNTGTQYAAIQSNGTGATVINSGNITSYKAISLSGNAHITNNAGGLIQSTVTTGGTFGITAAGTGNVLVNNGTIIAFTDGANLGSGGGNTLQNTGKITSNGGSFSGVYMNGTGNYASNSVTGLVEGGNYGIGMNSGTVSNAGSINASNAQYGMGVNIFSADNSNLLNNTGTITSGNSAVWMGGGRITNAASAVLNGSTVGVAFVTSSGTGMVNNSGLITGGNIGISAAGSLIVTNQAGGTISGSLQAITGAAGASINNSGIINGLGVFIDNGSVNITNNAGGTIEAGGTGWAIILKGTSNVVSNAGLLRGNSDALHTYNLGTVYNNGSIISLSGSNAGAFLDTSGAANYVSNSSGALIQGGWAGLGMNSGTIVNVGTLNATNATYGKGAAFLDVNASNLLTNSGSITSASTGVVMGAGSIQNMGASAIIAGNSIGVQFTGTTLAQSVLNSGGTIKGGVFGISAAGNANITNQVGGYISGGTTGIVSALAGTVANYGTIIGSSGPAIALQGNGINLLQLGVSSQITGSVTANSAGTNTLELLSGASAGTISGIGTQYLGFQNATVDAGATWSFAGSNSIASSTVLTNSGTINNTGTLAGVITMISGAALTNAVGANIGNGTFSPAIVSTGTSVNVVNNGTILGGQPQSTLISLGASSTLSNGGLLQGSGANAIIIAAGLNASITNSGTIIANNTSNTAVQMVSGTFNNAGLLRSDFAFSNGISASGIATVSNSGTISAAGAFGQAIVLTAGGTVINTGSVAAQIVAGTTRTAINFGAGNSRLAITSGSSIRGNVVAAGTGNVLELDGAGTTLSGFGTQYTGFQTINVKGDGWVLADTLTNTNILMQTTGTLTVSQALDSSNTITLGGTSSAGVGSGNIIISTPGTALAATVSDFGNGESITLMGLASQASDVVDVVSNGGNVFLILSHVASDGTKTQYYSIKLDPNAHDQNYKMRQAQGGNGVTVYDDGTPCYVHGTLILTDRGEVPVEDLQIGDHVITAGEAVRPIRWLGRRSYNGRFIQGRRDVLPVRIRQGALDGVLPKRDLLVSPLHAMFIDGVLVPAGRLVNGVSIVQEQHVETVSYVHIELDTHDVVFAEGAASESYVEDNNRSMFHNAHTYTGKGAAKVKARGRKRNGVAVARYCAPRVEDGRQLEAIRMRLMEHEVYQEMKAFALSA
>NZ_CP003181.2|WP_164504164.1|1623021_1623903_+|hypothetical-protein
MTGAFPGCGLSAHFYQSTSNDPLFYNNISLTAGTPSLSIAPQMNVMMQIMGAPTGDTYTSSNNPCNSSTSSPSQTTCADVGDYADEFRLQYASGLAVNNIAWGSWSSLGIAKQQILNEIQLYTQWYMADYRAQTNGVANGTFRSENIANQIALALSQLTTPGTSGGPPTARLVLFVGHDSTVQALGSLMNASWTSPDGVSNDSPPVSGFVFELYSDSSGNFFVRPRFITATLDQMRQNRRLTANGSNNPGNSTLIIPGCTTQSVDRCSASTFISILNTAIASTGITPTTVPYN
>NZ_CP003181.2|WP_125918909.1|1623945_1626024_+|calcium-binding-protein
MTTTTTNSGTISTGIVTVSGSEIYTNTTTGLITVPVTGTEYGAGIINSGTILNNAASTGATTAVSLNDTGSVAGSATNIDNNQGALIQGTDYGLDIEAASSSLTLSITNQGTILGGAGDGSTNGVAIYGIANTTLVNNTGGVISGDDTGIRLGVPAANTSPVSYSITNYGTITGINNTGIDLASGGTVTNNHGAVIRGYWAGVAMVANSSHNSVTTGGTVITDGTIIGQNNIAIQLAAPVSMEPYSNQVQIGTDAVFEGIVDGGVPASSTVASSALVLMATTSADTNTTGKLSGIGTEFVNFSALSLANGAGWIIDGGLDSISTVSLGAASELTLAGTGTLTSSQTIAFNNGGSRLRLGTGYALNAGNLQLGQGADTIQVADQSFNLAAGSGALTFIAGSGKSTITGGSGTLIFTGGSGASTVTSGAGGGTLSGGSDGGNLLVAGGGNTQLRAAGNGDQLFGASHGSSTLIGAANGQVSLVGGTGTALIVAGSGGGAIYAGSGSSTVFGSNAGGLVGTGTGNSLLVNMGRSTIAGETGTSTIFGSQSGQNTVFGGTGAMQLAETGGSNLVMGGGGAMTLFGGVGNDTILTGQGGIMTAFLGGNQNLVGLGSANATVVAGSGSDVFAVTAGAGGGTTTIYDFDPSKDKIGLFGYQPSEISQNVTNGSLQISLSDHTVITLSGVTNAQGSILAT
>NZ_CP003181.2|WP_025286857.1|1626084_1626567_-|GreA/GreB-family-elongation-factor
MSRAFVSEDAMAAQAAELPERPISDRPNLVTLSGLAAIEAEIARLQTALAEEKQSTVEESERRAVLARDLRYWLARRASAQLVPTAPENAEEVAFGDTVKLKLGGRTVTYRIVGEDEADPKQGLISYASPLAEALLGAALEEEVTFGPGRPSATVLKIIR

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Crispr_ID: NZ_CP003181_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_5

1835314-1835390

Orphan

Consensus_repeat	Method
CCAGACACAACCTGCTGACCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003181_5

>merge|NZ_CP003181|5|1835314-1835390|CRISPRCasFinder
CCAGACACAACCTGCTGACCGCCAGAATTGATCTTTGTCCCGCTTGCAACACCCCCGGACACAACCTGCTGACCGCC

>NZ_CP003181|5|4|1835314-1835390|CRISPRCasFinder
CCAGACACAACCTGCTGACCGCC	AGAATTGATCTTTGTCCCGCTTGCAACACCC
CCGGACACAACCTGCTGACCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_072632704.1\|1822843_1826917_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_125918926.1\|1819127_1819862_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_072632671.1\|1827188_1831049_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_125918924.1\|1814728_1815124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287007.1\|1818616_1818952_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376657
NZ_CP003181.2\|WP_038516433.1\|1849900_1851355_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP003181.2\|WP_072632672.1\|1835954_1839194_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_025287005.1\|1815279_1815894_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462
NZ_CP003181.2\|WP_025287010.1\|1820576_1822790_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_011632312.1\|1852547_1853915_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP003181.2\|WP_025287013.1\|1839420_1842483_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_081371646.1\|1842739_1847689_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003181.2\|WP_125918925.1\|1818261_1818651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287006.1\|1816044_1818189_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP003181.2\|WP_011632315.1\|1857239_1857761_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP003181.2\|WP_025287019.1\|1855997_1857095_-\|alpha/beta-hydrolase	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287015.1\|1848154_1849882_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP003181.2\|WP_164504174.1\|1854288_1855956_+\|Hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|372590
NZ_CP003181.2\|WP_038515573.1\|1820101_1820344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287017.1\|1851878_1852463_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_072632704.1\|1822843_1826917_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	6.40302e-53
NZ_CP003181.2\|WP_025287005.1\|1815279_1815894_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	4.04265e-83
NZ_CP003181.2\|WP_072632671.1\|1827188_1831049_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.18016e-67
NZ_CP003181.2\|WP_011632315.1\|1857239_1857761_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.222e-92
NZ_CP003181.2\|WP_025287007.1\|1818616_1818952_-\|hypothetical-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	0.00649394
NZ_CP003181.2\|WP_038516433.1\|1849900_1851355_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP003181.2\|WP_072632672.1\|1835954_1839194_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	1.09846e-49
NZ_CP003181.2\|WP_081371646.1\|1842739_1847689_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	1.6695e-70
NZ_CP003181.2\|WP_025287010.1\|1820576_1822790_-\|hypothetical-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	2.84997e-12
NZ_CP003181.2\|WP_011632312.1\|1852547_1853915_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP003181.2\|WP_025287013.1\|1839420_1842483_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	4.86562e-53
NZ_CP003181.2\|WP_025287006.1\|1816044_1818189_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP003181.2\|WP_025287015.1\|1848154_1849882_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP003181.2\|WP_164504174.1\|1854288_1855956_+\|Hint-domain-containing-protein	gnl\|CDD\|372590	pfam13403, Hint_2, Hint domain. This domain is found in inteins.	1.046e-38
NZ_CP003181.2\|WP_025287017.1\|1851878_1852463_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	4.67804e-87

>NZ_CP003181.2|WP_072632671.1|1827188_1831049_-|AIDA-repeat-containing-protein
MSNVVVSSGVTSTGLIIGQAGQYDSASVQGIITDTTVNNSGLVVVSGGGTASGTVINSGGQESVGSGGYSVSTTISSGGYQYLLSSGVASRTQVASRGTQIVSSGGTAIDTQAYTSGGQYIYLGGVAQDTHLNADAGQYVSSGGVTLNTQISGGAGQAVYAGGVASNTQISSGGRQFIFSGGLDSGGQVSAGGSQNIMGGGSAFSTTLSSGGLQYVNSGAFVSGTIFSTGGQQILLSGASISGASIQVVATQTLSSGATATGTVLVSGGRQFVSSGGVASGTMVSAGGSQFIQSAGLDIRGTVLGGFQIILLDGVASNTVISAGSQSVAGSAVSAQISSAGEQTVFDSGIASGTVVSSGGNQFVQAGGSAFAALLLSGGTQTVFSGATASGTVLSSGGMQLVSSGAIISNTIFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSDGGTQVISAGGVASATVVSSEGNQSVQSGGSAISVTVSYRGSQTISSGGVASATVVSSGGYQFVQSGGSATSTTIISGGSQTISSGGLDISGTLGGLQTILASGVASNTVISGGGQAVLGRAVSAQLSLGGTQFVYSGGIASGTVASSGSIQLVNSGGVANGTVVSSGAVQAVASSGVASGTVVNLGGLLLGSSGGSAVGTVVSNGGILNVEAGFSAISTTVSSGGSQTVSSGGIASGTIVSAGGVEQVISGGLAVNDVIIGQGAVSVSSGGVLSGSLTFSGVGSGTLILQNGAVVSGVVISGFQSDDQVDLSNLGYDSQGYVTQGSNNISVVTGNGSYSLNFANDGPGNRVFLAKQGANGSTVLYATGGILPAQSVSLVGTASSMTADFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTDVSTALHNLVFQPTGGGSATTVKLVLSNEAAPVVLQLNTTLNQYLVGGSQADTIMGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMASANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVTGTGGTVNLFGSTSGPGLLAFGASGGVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTEMFAGTGNALMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGAGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003181.2|WP_072632704.1|1822843_1826917_-|AIDA-repeat-containing-protein
MTIGTSSGGSQGDLMNVSGTAISTTLNLLGVMEVLSGGTASGTLVNSGGTQNIENGGLASDTLVSGGGTQVVYSGGTAQDTMLAGANATQVVGFGGVAKRTTLSAGAKQILVSGAVVSDTVFGTDGIQILVSGAQTSGILIDTLAFQAVSVGTTATDTILVSSGTQVVFSGGTASGTVVSAGGRQFVSSGAIISDTVFGSGGYQILGSGVAAHDFSLQVSASQLLSSGATATGTVLANGGMQFVLDGASASATLVNSGGSQLVFSGRVTGTTISAGGALEVSGLVSSAISLSNTFGSALGTIISSGGTEIVWNGGWDGIRWDTNVSSNGNNPLSGAMILAGGSQVVNGGNAYGATISSGGTQIILAGGSDGGWRSIDEVAGLVGKTSGGGGTTILAGGSQAVSSGGTAVAALISSGGTQIVFAAGYAVSAMINSGGEQILSAGGETASTTIGAGGLQTVLSGGHDGRQVAVSTTSGSSGGWGYYYGASILSGGRQDVLGGGVAYSVNISAGGLQTVVGGGSTFQVYVSSGASQTVADGGVLNTTWIMSGGTQTVLSGGVAGSDEVYGMQIVSSGGVASGSFINSGGQETILTGGTAISATIYRSAKQSISASGIASLTTILGGGTQVVMSGGIAASATISQGGTQIVSASGSASGTTVNQYGLQTVLSGGYATGTILMSAALQYISAGGIAEKTTINSSGYQVVSSGGSAIGTIVNDSGIQFVSSGGYATGVTLHSAGYQFVSSGSVVSNTTISSGGMQFIEGIAVNDLIADQGTVTVFSGGTLSGSLTFSDVGSGTLKIMDDRTSLSGVVISGFKSDDKIDLAWLLYSKNTSVKQSGGRVLIENPYASSYTLNFASSQTIQIRQDTDNSTILYVSDAQPTPTPEPAPTGYAQLMKQVSLTGTSSGGTLSTVFGFGSGYAGSFSNLGSGTVSADGSSYSVSGTASDILSALQTLVFQPASTGSAPSSVRVILKNETAPVVLKLNTALNQYLAGGAAADTIIGGSGNDTLASGSGGGVLQAVGKGDLLIGGRGSTSFNDGAGAATIFGGRGHDTIDAAAGGNLVMTGTGGSTVYLKARGNSLWSYGADNVSVSAGANTVIGAGGSNATISGGSSGVMFIGAGGVSTILGGDGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGINGTYFGGTAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDMMIGSTNGSAVDIFAFANGQGGGSDTISGFTAGVDHLVLNGFSSAQADASYATKSVDGAGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003181.2|WP_025287010.1|1820576_1822790_-|hypothetical-protein
MALISISSGVSSSGLVIGQSGSLSAIQYDTAIVNGAVTSTSLNSSGAMTVASGGIADLTVINGGAQVVNWGGRVSGTVIGDAGTQTILYSGLADGTQINSGGRQYMYGLATNTVVAGDTAQQIVDSGGVASGTVLTAGGQMVIRQNSIGANAVISGTGKISLGSAGWLRGSLTFTGNGSGTLAVLDQTVDVSNTVISGFKADDAIDLASMRYVNSASVIQTSRAGVVKIVAGTSSAYLKFSSDSLAGQVLLAQNDGSGGTQVYTASGIHPFTNDITLYGYSTATQVTAQFSLNSSFGGTYANLGTGDLSADGKTYIVSGRPEDVSSALTNLAFLPTAGGTAPSSISVVLKNETAPVYVKLNTSLSQYLAGGAGKNTITGGAGADTLASGSGGGYLYASGQGDILIGGRGATFFEDGEGYTTIFGGKGHDSIVASANHNLLMTGLGGSTVSMKGQENTLWSNGSDTVVAYAGVNTVIGSGEGARFLVANGQSSPIFISMGGSNTIVGADGASTMFGTAGSLIYTGGGSGSGLVLLGSGSKGELYGGDAGTMLAFGQSGATLTYYGGNGSRDTIQGGSGNITVEGATNGTFFAGSAGSNVIDVTKNSTVFGGGDGDILRSHGEGNVLQAGSGNTTLSGYWAPGTVMFAGTGNALMAGSVSMKAVDIFAFTNGRGGGSDTISGFQKGVDRLVFNGFSEQQVDAAYFTMRPDTAGNVHFTLSDNTRITLQGVPFLFRSDFG
>NZ_CP003181.2|WP_038515573.1|1820101_1820344_+|hypothetical-protein
MGSISHSDTRQFIVGHDIQGRWVVCDQSGAIGGIFKNRDSALSFARSETGHHPHAVFCAPDHLVMDFFSTISHTALRPQS
>NZ_CP003181.2|WP_125918926.1|1819127_1819862_+|hypothetical-protein
MHARTRRYRRSPLLMTVCGMVAASAMLLPALVRAASPPSYTPPPLPSPPPADTPKTAQQPTDYLGLPGPILLGKKLYHLVWSAHPTAAYVKQEYIPADETITHYDSMLLIERISGPMTVEQSVNLMALQLQSRKTRDPLTRLTVVNNQETGNTMLDFLISGETREGPIVEWNAYRYAPLTKDGGVVLFGLSRRAYGQDGLAAFMSKLSDTRQEGLDLLTTTPMPQPHEPPPPPPAPAKGREKKG
>NZ_CP003181.2|WP_025287007.1|1818616_1818952_-|hypothetical-protein
MKNARVFLLAIFVTFLGCSDIPAEKIDKIYLTQDDITDRPYKILGDINVTAKKLTIFSRNPTREDVDRKLKEKAVGLGADAVIYVRYGTPGIGLWSWDQLDGAGRAVRFNN
>NZ_CP003181.2|WP_125918925.1|1818261_1818651_-|hypothetical-protein
MELDARYGLIINSLVQSLFLYGCASPPPPLPPVSVDNHVQPNSEESKFSCNDLKDHIAKIGNEISSFFQSANNVDSYNQNVFMASAFFVPAYLLVKYPKNEADKINNLYIRKDRLMLAYKQKCVSNNKY
>NZ_CP003181.2|WP_025287006.1|1816044_1818189_+|catalase
MAPPTRPSRPASSSASVPPPPSGGGCPFLHGLGGELHQLAGENNPVLTTQQGIPVGDDQNTLRLDARGPALLEDFHFREKMFHFDHERIPERVVHARGYGAHGFFELTESLSDITKADIFQRKGEKTPLFVRFSTVAGNKGSPDLARDVRGFAIKFYTKEGNWDLVGNNIPVFFIQDAIKFPDLIHAAKEAPDRAFPQAQTAHDNFWDFISLMPEAVHMALWIMSDRTIPRSLRFMEGFGVHTFRFVNAEGHSTYVKFHLKPKLGLQSVAWNEAVKINGADPDFHRRDLWSALNSGDFPEWEVGVQLFDDAFADAFPFDILDATKLIPEEDVPVRIIGRLVLTRPVDNFFAETEQVAFCTQNVVPGIDFTNDPLLQGRNFSYLDTQLKRLGGPNFTHIPINAPHVPVQNFQQDGHMAMRNPRGRANYEPNSWGAEGGPREDPQRGHTSFPAQESGEKRRARPEKFADHYSQARQFYLSQTPIEQRHIADAFTFELSKVETPAIRERMVGHLRLVDEALADAVAGGLGLKALPDAPKPARAPINDLPPSAALSIVANGPQRFEGRKLGLLVSDGADAALLSALIEAVDKEGAQLELIAPTVSGITDSKGVSHKAQQRVEGGPSVLYDAVAVLLSADGAALLSQKPEARDFVSDAFAHAKFIAFTKEAEPLLEAAGITPALQDDGFVRLEKEDDAARFLKTCGALRFWEREAKKPA
>NZ_CP003181.2|WP_025287005.1|1815279_1815894_+|NAD(P)-dependent-oxidoreductase
MSSIALLGATGNAGSHILKELSDRGHRVTAIARNVSAVPTLPGVTAVNGDAADTATIVPVLRGHDAVISALPFPTIDPALLLRAVREAGVKRYLVVGGAGSLEAEPGVMLIDHPDFPAEYKFEASHGVAFLDLLRSSASDLEWSFISPSILFGPGGRTGVFRLGGDQVLRHEGGSSISYEDYAIALVDELEHPAHIRQRFTVGY
>NZ_CP003181.2|WP_125918924.1|1814728_1815124_-|hypothetical-protein
MINTASHEARPQDMKDAPVLPPDKYIVMGGDLTHCLWSSKGEMILLADLPISQDLTTRLQAWEDWADDFEDFLPPEERAPFDLEGFTEAGLEIARALKAELPDYTILYCDESRWQARKELGLTPAECRYEV
>NZ_CP003181.2|WP_072632672.1|1835954_1839194_-|AIDA-repeat-containing-protein
MADIVVSAGVTSSGITLNGSVGSTTVDVLGTTINTQLTGVSSETVSSGGLAISTIIGNSANQSVATGGVASSTVVSSGGTNNVLFGGVAISTTVSAGGSEIVAPSAVASDTVVSSGGQQTVFDSGIASGTIVRSGGTQAISAGGVASATLISSAGEQTVFDSGIASGTVVSNGGNQFVQAGGSAFSALLLSGGTQTVSSGATASGTVLSSGGMQLVSSGAIISNTVFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQVISAGGIASTTVINSGGLQTVSSGGSASGTVVSLGGNMVLLSGGVVQSAVLSGGNLTVSSGASVSGVAIENQASDLIISSGGSALGTLLNNGRAIVQAGASVSGTRMTTNGDLYLIGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGIAIGTVVSSGSQFVDAGGVASGTVLQGTLQTLGGVAYNAQVTGSGALQSIQSGGVASGTIVTSGGGQLILAGGVAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGSNNISVVTGNGSYSLNFANDGPGNRVFLAKQGANGSTVLYATGGILPAQSVSLVGTASSMTADFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTDVSTALHNLVFQPTGSGSATTVKLVLSNEAAPVVLQLNTTLNQYLVGGSQADTIIGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMASANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVTGTGGTVNLFGSTSGPGLLAFGASGGVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTAMFAGTGNVLMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGSGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003181.2|WP_025287013.1|1839420_1842483_-|AIDA-repeat-containing-protein
MSVIDIASGITSTNLVLGIPGGQYDSATVEGTVISSIVKSTGLIVVSNGGNASGTVISTGGALTISNGGTATSTVIRTGGIETVYAGGTDSGATVSNGGTQIISSGGTVSDTALKSGGVQTVYAAGSAVNVTVSRGATQFVSSGGETSSTEIASGGIQTIYDGGLDDGVAVDSGAIQNISSGGMAVSGTVSGIQNIFSGGNTSNMGLISGSIQNISSGGSASNILVAGTQNVYAGGSSMSASVNGIQNVYSGGIVSNVLITYGGSQNIYDGAVLVGAAVNYNANQNVLSGGSALSAIISGGTQTILSAGSVTSATIFSGGTQFVSSGGNANLTQVSANGLQTVLSGGTVVSTTVADGGTQSVSGGGIASLTVISSGALQAVLSGGSVVSTMLAASGIQTLSSGGTATGTIVSSDATQIISAGGVASSTTISTGGIQTVAGVAVDDVIAGNGSAVILRGGSLSGSLTFSSAGSGTLLITDFRSVISGAVISGFQSDDQIDLDWLQYSNNTTVTQSGNTVTVANSYGHYALTFDNAAAILAKADADGSTLLYVADYSQLPKQVNVSGASASGTMTASFGFNAAYTGTYSNLGSGTVSADGSTYTIAGTTEEVFSSFQNLVFQPSSPSSAPSFVQVILKSETAPVVLQMNTTLNQYLAGGAAADTIIGSSGADTLVSGSGGGVLQAVGKGDLLIGGRGSTLFYDGAGSATIFGGRGHDTINAAAGSNLIVTGAGGSTVDLDSQGNSLWSYGADNVAVVAGANTVIGAGGSNATISGGSSGVTFIGAGGASTILGGDGASTLFGTAGNLTYAAGNGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGINGTYFGGSAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDLMIGSASGVAVDIFAFANGQGGGSDTISGFNVGVDHLVLNGFSGAQADASYATQSVDGAGNMHFTLADNTQITLVGVSALSRSQFG
>NZ_CP003181.2|WP_081371646.1|1842739_1847689_-|AIDA-repeat-containing-protein
MADITVAAGVTSTGLNVDGAPGSATLDVLGTVSNTVAYPQNASVIITVSSGGSAVSTTLTQTPFMAARQIILTGGTATGTVLSVGREDVSGIASRTVVSSGGIQTVSSGGVASGTVLSDGGAGYVFSDGIASGTMVQSGGGQHVIGGAALGTWIQSGGGQDVQRDGVAVGTVVFVGGVETVLSGGVAISTAVNSGGRQIVSSGGVASGTTISSGSFQTVLSGGVVSGTTVSSGGEQYVRGGVAIGTMLNSGARGYVNSGGVAIGTLIGSSGVWFVWSGGSAINETLVSGGTQFVLAGGIVSGTLVSSGGVQTVSSGGVASNTVVSSGGVQTVSSGGSATNATLVSGGTQFVSAGAIVSGTVFSAGGNQVLLSGVSTTGTSLQVAASQTVSSGATATGTILASGGTQLVSGGTVISTVVSSGGVQTVLSGGIAINATLSSGGTQFVSAGGLVNGTVFSAGGNQVLLSGVSTTGTSLQVAASQTVSSGATATGTILASGGTQLVSGGTVISTVVSSGGVQTVLSGGIAINATLSSGGTQFVSAGAIVNGTVFSAGGNQVLLSGVSTTGTSLQVAASQTVSSGATATGTLLASGGTQLVSAGGIVSGTVFSAGGNQVLLSGVFTTGTSIQVAASQTVSSGATATGTLLASGGTQLVSSGGTVISTVVSSGGVQTVLSGGSAINATLSSGGTQFVSAGGIISGTVFSAGGNQVLLNGVSTTGTSIQVAASQTLSSGATATGTILASGGTQLVSSGGAAISTVLSSGGSQTVLSGGSATNATLLSGGTQFVSAGAIVSGTVFSAGGNQVLLSGASTTGTSIQVSASQTVSSGATATGTLLASGGTQLVSSGGTVLSTVVSSGGVQTVSSGGAAIGTVITLAGNVVLLSGGVVQSAVLSGGNLTVSSGASVSGVDIENQASDLIVSSGGSAIGTLLNNGRTVVQAGGSVSATRITTNGDLYLNGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGIAIGTVVSSGRQFVDRGGVASGTVLQGTLQALGGVAYNAHVTGSGALQSIQSGGVASGTIVTSGGGQLIQAGGIAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLVIGNNGAVVSGVVISGFQSDDQVDLSSLGYDSQTYVTQGGSNISVVTGNGRYSLNFANDGPSNRVFLAKQGANGSTVLYATGGILPAQVVPFGGAASSMTATFGFDAGYSGSYANLGAGAVSTDGKTYSVTGMSAEVSTALSNLVFQPTGGGSPTMVKLVLSNEAAPVVLQLNTTLNQYLAGGSKADTIIGGSGNDTLASGSGGGVLQAVGKGDLLIGGRGSTAFHDGEGSATIFGGRGHDTIHATAGHDLILTGQGGSTVTLSGQGNSLWSYGADNVAVFAGANTVIGAGGSNATISGGSSGVMFIGAGGASTILGGNGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSTAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGINGTYFGGSAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAAGGNTTLNGGGADGTVMFAGTGNDMMIGSTNGSAVDIFAFANGQGGGSDTISGFTAGVDHLVLNGFSGAQADASYATQSVDGAGNMHFMLTDNTQITLVGVSALSRSQFG
>NZ_CP003181.2|WP_025287015.1|1848154_1849882_-|choline-dehydrogenase
MSNVQEYDYIVIGAGSAGNVLATRLTEDAGMRVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAFETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAERDGLEEWSYAHCLPYFRKAETRDIGPNDYHGGDGPVSVTTSKLGRPGGGANPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTKHGRRASTARGYLDQARKRKNLTILTHALTDRILFAGKRAIGVAFLHGGESKIAYARQEVLLCGGAIASPAILQRSGVGPASVLKALDIAPVQIMEGVGSNLQDHLEMYMQYECLEPVSLYPALLWWNQPKIGAEWMFLGKGLGASNHFEAGGFIRSHDDFAWPNIQYHFLPVAISYNGTNAVQMHGFQAHVGSMRSPSRGRVQIVSRDPEVYPSILFNYMSHEQDWREFRAAIRITREIMAQPALDQYRGRELSPGVELTTDADLDAFVRSHAETAYHPSCSCKMGTDDAAVVDAEGRVHGLEGLRVVDASIMPLITTGNLNAPTIMMAEKIADRIRGRAPLPPSDAPYYRADGAPVRGTGMRRAFGHDVNVS
>NZ_CP003181.2|WP_038516433.1|1849900_1851355_-|betaine-aldehyde-dehydrogenase
MTPGLYIHGQIEAGTGEVFSSVNPADGSVLAHIAAAREADIARAVASAQEGQRIWAAMTGIERGRILRRAVDILRARNDVLALLETKDTGKPFSETSTVDIVTGADVLEYYAGLAQAIEGEQIPLNATQFAYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTVIELAKIYTEAGLPDGVFNVVQGRGDVGAMLTAHPVIEKISFTGGVETGKKVMALAGSSSLKEVTMELGGKSPLLVFEDADLDRAADIAVMANFYSSGQVCTNGTRVFVQESVLPAFREKLLARVAKIRPGHPEDPATVFGPLASFPHRDKVLSCIARGVAEGATLLAGGEAPQEAEFSRGAYVLPTVFGDCRDDMAIVREEIFGPVLSLLSFRDEEEVITRANATEYGLAAGVVTESLSRAHRVIHRLEAGICWINTWGGSPAEMPVGGYKQSGVGRENGLVTLGHYTRIKSVLVELGGFQSVF
>NZ_CP003181.2|WP_025287017.1|1851878_1852463_-|transcriptional-regulator-BetI
MPKVGMQPIRRAQLIRATLQSIDEVGLSDTTVARIARIAGVSTGIIAHYFQDKEALLEAAMRQILADLFAAMRARRKAAVDDTPRTLLRAIVEGNFDGTQTSTAAAKAWLAFWSSSMHQPHLRRLQQINAWYLHRVLRTQFLRVQTMEQAHRSALGLAALIDGLWLRATLAGKIKEENIQVAFDYIDQKLTGYL
>NZ_CP003181.2|WP_011632312.1|1852547_1853915_-|signal-recognition-particle-protein
MFDTLSGKLTGVFDKLRGRGALNEADVAEALREVRLAMLDADVALPVVKDFIASVRERAAGAEVIDSVAPGQQVMKIVHDALIEQLGGAGAVPLNLNAVAPVPVLMVGLQGSGKTTTSGKLALRLAKKERRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETGRREVYDIVILDTAGRLAIDEELMEEVKAIRAETNPSETLLVVDAMTGQDAVNTARAFNEAVGVTGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGRILGLGDVAGLVEKAAETIDEAEAEEMAMKMLKGRFTLEDYAKQLKQISRMGSLSSIMGMLPGLGKFKQQIENANIDTSILKRQAAIISSMTVKERRSPDIIKASRKKRIAAGAGVQVQDVNRLLKQFDDMSQMMKQFSKLGQKGLMRNGMQALMAQRHRPQ
>NZ_CP003181.2|WP_164504174.1|1854288_1855956_+|Hint-domain-containing-protein
MFQNGANAFLSTNHNIEDLSISGTVTIASDGHTLHNDNARLTLAGGSVLVLDNVHLVTQTTIISSGQATIRLQGAQLEIEYGSYMPATLDFQDRHNADGSVSGSTVMINSEGAKANMFASITNLTTRDAIILTNAPTSGSRIYLQANGDGSYSLIEQVPEWGRQTSILCSHVTLAAGLTAGDFTSLNQNGILELVCFLGGSMISTPEGEKPVETIYPGHSILTLENGQPVARKVIWSGVATAHVNQDLPDDQGGYPVRIRKDAISDQVPYKDMLITSDHCLYLDGYFIPARLLVNGRTIFYDRSFTSYQYYHIETEKHAIITADGVLTETYLDTGNRRQFSPLSTEQTSGNVTLFGGRKSNWAEDAAAKLAVTPDLVETVFRRIEARANEFAPPARPSTTTERQLQLKTQDGQMLRQVREINGRVLFMVPAGVNAVRILSNASRPCDVTGPFLDDRRNLGVLIGEAVLYDSGMTHTLNAHLEHEGLEGWHNPPPYEASTGACSGQRWTNGNALLPLGKRQDGAIGLLSLQVLAGGPYIIATPADEDRPINITGTA
>NZ_CP003181.2|WP_025287019.1|1855997_1857095_-|alpha/beta-hydrolase
MTQPSSASSPDRIAREIFRGAHYLARFLSADAEALVPDGPVVVFFETWLPQPDMEAPVTGETFFTHRGLDVIAIKPAANDWYQQDEMIELIDAVLAETKGRRRVGYGGSMGGYAAINFAESLALDDLVAVAPQFSIDPALMPQDWRWRREAEGIAFRQDRMRLIGRLQRGTIIYDPDSEDRPHVRAILMYHDLTPLPLRFCGHHMFRALQQARVLPMLAMDLVLGRFDHAAFRRAFRAGRRKSPVFWLELARGLCAKFWLKAATAALDRARALAPDDAFAQDVVAGEIARAGGNRQEADRLMQLWRSHENAELAEAARYRMAQWTWYDTRSAEEIEYERAARAAEHLLAAPQAIPDFTWPVSHGQ
>NZ_CP003181.2|WP_011632315.1|1857239_1857761_-|translation-initiation-factor-IF-3
MPAPPNRDGPRVNEEIRVPQVRLIDQDGEMQGVMSARDALIRAYAVGLDLLEISPNAEPPVVKILDYGKFKYEQQKKKNEARKRQKVIEIKEIKVRPNIDENDYQVKMRAMRSFISEGDKVKVTLRFRGREMAHQELGARVLQRIREELDAETKVEQMPKMENRQMVMVLAPR

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Crispr_ID: NZ_CP003181_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_6

1879665-1880119

Orphan

Consensus_repeat	Method
GGTCTATCTCCGCGCACGCGGAGGAACC	CRISPRCasFinder
GGTCTATCTCCGCGCACGCGGAGGAACC	CRT
GGTTCCTCCGCGTGCGCGGAGATAGACC	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP003181_6

>merge|NZ_CP003181|6|1879665-1880119|CRISPRCasFinder,CRT,PILER-CR
CGTCTATCTCCGCGCACGCGGAGGAACCCTGGCTTTCTCAGATATTCCTCGCAGGTTATAAGGTCTATCTCCGCGCACGCGGAGGAACCACCGAACGATTGCAGCAACCCGATCATCGGAGAGGTCTATCTCCGCGCACGCGGAGGAACCTTCTCCGCCCGAGGTGATTTCCGAACCAAAGCGGGTCTATCTCCGCGCACGCGGAGGAACCATCCGCTGGCCCGTCAGACCTTCGTCAACCTTGGGTCTATCTCCGCGCACGCGGAGGAACCGTGTATTCCTTGATGGTAATCGTGTATCCAAGAGGTCTATCTCCGCGCACGCGGAGGAACCATCATGGTGCCGAAGACGATGACGCGGCTGCGCGGTCTATCTCCGCGCACGCGGAGGAACCTTCATGGGGACGTTACAGACGTCACGTCCCCACGGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003181|6|5|1879665-1880119|CRISPRCasFinder
CGTCTATCTCCGCGCACGCGGAGGAACC	CTGGCTTTCTCAGATATTCCTCGCAGGTTATAA
GGTCTATCTCCGCGCACGCGGAGGAACC	ACCGAACGATTGCAGCAACCCGATCATCGGAGA
GGTCTATCTCCGCGCACGCGGAGGAACC	TTCTCCGCCCGAGGTGATTTCCGAACCAAAGCG
GGTCTATCTCCGCGCACGCGGAGGAACC	ATCCGCTGGCCCGTCAGACCTTCGTCAACCTTG
GGTCTATCTCCGCGCACGCGGAGGAACC	GTGTATTCCTTGATGGTAATCGTGTATCCAAGA
GGTCTATCTCCGCGCACGCGGAGGAACC	ATCATGGTGCCGAAGACGATGACGCGGCTGCGC
GGTCTATCTCCGCGCACGCGGAGGAACC	TTCATGGGGACGTTACAGACGTCACGTCCCCAC
GGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003181|6|3|1879665-1880119|CRT
CGTCTATCTCCGCGCACGCGGAGGAACC	CTGGCTTTCTCAGATATTCCTCGCAGGTTATAA
GGTCTATCTCCGCGCACGCGGAGGAACC	ACCGAACGATTGCAGCAACCCGATCATCGGAGA
GGTCTATCTCCGCGCACGCGGAGGAACC	TTCTCCGCCCGAGGTGATTTCCGAACCAAAGCG
GGTCTATCTCCGCGCACGCGGAGGAACC	ATCCGCTGGCCCGTCAGACCTTCGTCAACCTTG
GGTCTATCTCCGCGCACGCGGAGGAACC	GTGTATTCCTTGATGGTAATCGTGTATCCAAGA
GGTCTATCTCCGCGCACGCGGAGGAACC	ATCATGGTGCCGAAGACGATGACGCGGCTGCGC
GGTCTATCTCCGCGCACGCGGAGGAACC	TTCATGGGGACGTTACAGACGTCACGTCCCCAC
GGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003181|6|4|1879666-1880119|PILER-CR
GTCTATCTCCGCGCACGCGGAGGAACCC	TGGCTTTCTCAGATATTCCTCGCAGGTTATAAG
GTCTATCTCCGCGCACGCGGAGGAACCA	CCGAACGATTGCAGCAACCCGATCATCGGAGAG
GTCTATCTCCGCGCACGCGGAGGAACCT	TCTCCGCCCGAGGTGATTTCCGAACCAAAGCGG
GTCTATCTCCGCGCACGCGGAGGAACCA	TCCGCTGGCCCGTCAGACCTTCGTCAACCTTGG
GTCTATCTCCGCGCACGCGGAGGAACCG	TGTATTCCTTGATGGTAATCGTGTATCCAAGAG
GTCTATCTCCGCGCACGCGGAGGAACCA	TCATGGTGCCGAAGACGATGACGCGGCTGCGCG
GTCTATCTCCGCGCACGCGGAGGAACCT	TCATGGGGACGTTACAGACGTCACGTCCCCACG
GTCTATCTCCGCGCACGCGGAGGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_025287028.1\|1870679_1871690_+\|transporter	unknown	unknown	gnl\|CDD\|213368
NZ_CP003181.2\|WP_081371692.1\|1874949_1875630_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP003181.2\|WP_025287036.1\|1880650_1881871_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP003181.2\|WP_173656027.1\|1877756_1879652_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP003181.2\|WP_025287029.1\|1871804_1872722_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP003181.2\|WP_173656028.1\|1885817_1886915_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP003181.2\|WP_025287039.1\|1883313_1884723_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP003181.2\|WP_038515578.1\|1886926_1887841_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP003181.2\|WP_025287034.1\|1877013_1877760_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP003181.2\|WP_025287037.1\|1881888_1882545_-\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_CP003181.2\|WP_025287043.1\|1887854_1890719_+\|DUF4159-domain-containing-protein	unknown	unknown	gnl\|CDD\|379342
NZ_CP003181.2\|WP_051496909.1\|1890731_1893008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377775
NZ_CP003181.2\|WP_025287030.1\|1872766_1873528_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP003181.2\|WP_025287026.1\|1869075_1869306_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287040.1\|1884885_1885800_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176117
NZ_CP003181.2\|WP_025287031.1\|1873708_1874695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373161
NZ_CP003181.2\|WP_025287045.1\|1893106_1893616_+\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP003181.2\|WP_038516443.1\|1882548_1883088_-\|DUF1285-domain-containing-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP003181.2\|WP_025287027.1\|1869434_1870568_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP003181.2\|WP_051496908.1\|1875864_1876890_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_025287028.1\|1870679_1871690_+\|transporter	gnl\|CDD\|213368	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily. The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.40254e-104
NZ_CP003181.2\|WP_081371692.1\|1874949_1875630_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	6.85873e-50
NZ_CP003181.2\|WP_025287036.1\|1880650_1881871_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	6.13792e-67
NZ_CP003181.2\|WP_173656027.1\|1877756_1879652_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.02049e-159
NZ_CP003181.2\|WP_025287029.1\|1871804_1872722_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	2.11342e-149
NZ_CP003181.2\|WP_173656028.1\|1885817_1886915_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	9.07171e-91
NZ_CP003181.2\|WP_025287039.1\|1883313_1884723_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.34833e-162
NZ_CP003181.2\|WP_038515578.1\|1886926_1887841_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	4.45414e-32
NZ_CP003181.2\|WP_025287034.1\|1877013_1877760_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	2.21986e-91
NZ_CP003181.2\|WP_025287037.1\|1881888_1882545_-\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.44948e-63
NZ_CP003181.2\|WP_025287043.1\|1887854_1890719_+\|DUF4159-domain-containing-protein	gnl\|CDD\|379342	pfam13709, DUF4159, Domain of unknown function (DUF4159). Members of this family are hypothetical proteins.	3.32133e-57
NZ_CP003181.2\|WP_051496909.1\|1890731_1893008_+\|hypothetical-protein	gnl\|CDD\|377775	pfam07090, GATase1_like, Putative glutamine amidotransferase. This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown. The structure of this cytoplasmic domain was solved by the Midwest Center for Structural Genomics (MCSG). The structure has been classified as part of the Class-I Glutamine amidotransferase superfamily owing to similarity with other known structures. The monomer combines with itself to form a hexamer, and this hexamer exposes a potential catalytic surface rich in Glu, Asp, Tyr, Ser.Trp and His residues.	4.34835e-06
NZ_CP003181.2\|WP_025287030.1\|1872766_1873528_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.08603e-42
NZ_CP003181.2\|WP_025287040.1\|1884885_1885800_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176117	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.48762e-30
NZ_CP003181.2\|WP_025287031.1\|1873708_1874695_-\|hypothetical-protein	gnl\|CDD\|373161	pfam14613, DUF4449, Protein of unknown function (DUF4449). This is a fungal DUF of unknown function.	6.96299e-07
NZ_CP003181.2\|WP_025287045.1\|1893106_1893616_+\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	1.25497e-48
NZ_CP003181.2\|WP_038516443.1\|1882548_1883088_-\|DUF1285-domain-containing-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	1.28425e-79
NZ_CP003181.2\|WP_025287027.1\|1869434_1870568_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.36542e-32
NZ_CP003181.2\|WP_051496908.1\|1875864_1876890_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	1.4598e-157

>NZ_CP003181.2|WP_173656027.1|1877756_1879652_-|ABC-transporter-ATP-binding-protein
MDRYSPAGGVQTAPRPDTPGCMDARPLDQVTDQSPPPHAPPKRRGKGARKINVELEPTALAMMGRLWREHIAHHRVRMLVVILLTALMAGSTALYPVVIQHAIDLFNARDRRILYQIPVLVLIVTAIKGAAMYGQTVSMQQLVLIVIRELQERMFSHLAHADLDRVEREAPAQLAARFTTDAATIREALVRAVNGVGDVVTVVGLVSSMVYLDWVLSLIAAAMYPLAALPIQKIGKRIRRASGGMQERMGETAALLNESFAQARTIRAYRLEDFEIRRAGEAFQHLYSALLRMTRSRARVDPVLEVLGGSAVAVVIGFTGWRAANGQSSLGDFAGFIAALLIASRPLRALGSLNAAVQEGVAGLVRVFAVIDEPAAIRDAPGAVPLPQGQGHVAFENVGFVYADGRTGLDGLSFAAQPGMTVALVGPSGAGKSTALALLPRLRDATSGRVLVDGADVREVTLASLRDAIAYVGQDALLFDDTIAANIGIGREGAERAEIEQAAEAAAGGFIRDLPEGFETIVGPGGQRLSGGQRQRVVLARALLRNPRILLLDEATSALDAESEAAVQQALTRLRQGRTTLVIAHRLSTVRDADLVVAIADGRVAEQGTHTALMEQDGLYARLVRSQTLEL
>NZ_CP003181.2|WP_025287034.1|1877013_1877760_+|VIT-family-protein
MRSRIRHRETHATERLGWLRAAVLGANDGILSTASLMVGVASATSPGSGRGAILLAGLSALIAGAMSMAAGEYVSVSSQSDSERADLVREKKELDADWHGELDELTEIYRLRGLDAPLARQVAEQLMRRDPLSAHARDELGMSEDGAARPVQAALASAASFACGAALPWLAAALAPDPYDAAGQSTGQTSVIWTVSAVSLLALLLLGLAGAWAGNAPKLRAAIRVLLWGVLAMAATAITGHLFGGVVG
>NZ_CP003181.2|WP_051496908.1|1875864_1876890_+|UDP-glucose-4-epimerase-GalE
MNETVSGVSPHHPLRLLVTGGAGYVGSHTVWALHDRGDEVTVYDSLFQGHRQALPPGVRLVVADLSDETTLHAILAEGQWDGVLHFAARSLVGESMVNPMLYMNQNAALGFKLIAACVQHKVPRFLLSSTAALFGHHDDTPIDENAAIQPGSPYGESKLMIERALSWADRIHGLRYACLRYFNAAGADPQGRSGEDHDPETHLIPLVIDAALGLRPEIKVFGHDYPTRDGTCIRDYIHVSDLAQAHLAALTRIDHGSTVYNLGNGAGYSVLEVIRSVERVSGLTVPMRIEARRPGDPAVLVASAEKIRRETGWTPRFPELDDIVATALAWRRAHPQGFDAA
>NZ_CP003181.2|WP_081371692.1|1874949_1875630_-|YceI-family-protein
MTGTWKSVAIGTPFLAGAFLAGAFLAGAGTLGFEGGTAHAETASQKIASTDPASIKAGTYVADPAHSQVAFSVSHFGFTHYNGLFSDAQGELTIDPAAPEKTRLRISIPIASVVTTSQKLTEELKSADWLDSAKFPQATFVADKVTLAGKDHAMVPGNLTLHGVTKHVVLRVRLVGTGINPMDKKQTIGFEAYTEIHRGEFGITKYLPVVGDEVKLRIAGAFELKE
>NZ_CP003181.2|WP_025287031.1|1873708_1874695_-|hypothetical-protein
MSHTTHPVPPGPYGDTGWSSQDEYLALDERRIRLSNRISWGAVLAGVVLALVVQALLNLLGIGIGLSSVDAANSSGNPDADTLSMAAAGWWTLSGIIAAFFGGHVAGRLSGTAKLNTARWHGLVSWAATTFVLFYILTTAVGGMVGGAISTVGSGVGHAIGGTASGIGSMVGGIGNAAGTAAARNPDDAKQAYNSLEAQVRSLVNPSDAQAVQNSAVAYVKAKLNGNQQEADRAREQAVNGLAKAANISPDEAKTRLDALEQQYQKTVDEAKQQAIAAAEATRKAAARGAIFGVIGLLLGAVAAWFGGGAGAPEAEAVIHHNHVVRRD
>NZ_CP003181.2|WP_025287030.1|1872766_1873528_-|TSUP-family-transporter
MHLSWALDVFLFAAAFCAGVVDTVAGGGGLICVPALGLTGMGTVAVFGTNKLQSVLGQLSATLKFWRQGGMDFSPLRPGLLCTVVGALAGAMLLQIVSEVFLKRLVPWMLLGVFLYYVLSSDRKDVAGEARLPPHPCKLQPLGVVIGFYNGFFGPGTGSIWTVALSRTYQLRINAATMYANPLNMAGNIAALSILISSSAVDYRRALIMGAGSFLGAQIGGNVVIHKSARLLRTVFMTLMLVSIIGSFLRAYG
>NZ_CP003181.2|WP_025287029.1|1871804_1872722_+|polyphosphate-kinase-2
MNDLSSPIEKSWLALELEDDFDEELEQEIDDSRLPAALRALQNQHRKSTIDRGLYFRELLRLQSELVKLQDWVVHNGLKVVVLFEGRDSAGKGGVIKRITQRINPRVARVVALPAPSDRERTQWYFQRYIAHLPAAGEIVLFDRSWYNRAGVERVMGFASESQVEDFFRDVPEFERMLVRSGIIVVKYWFSITDQEQQLRFMMRIHDPLKQWKLSPMDLQSRVRWEHYTKAKEEMFERTNIPEAPWYIVEGNDKKRARLNCISHLLSLIPYGDVPHEPVALPERVFDPHYERRTLPAELYVPENY
>NZ_CP003181.2|WP_025287028.1|1870679_1871690_+|transporter
MDKPARMPPCYGLLAARDLTARKLLTAPEIEAIFSIGVPEKPIWLHLDLLDTRVTEFIRALPGLQEQACALLCDRNESSHLDTENDALWGTIPDFAHEVSEEPDPAYMGVLHLVMTPTMLVTARRHPLRAPSVIGYGQASLDTTAAQWDHLMRAIMEGISRAAKVLALKLDNMEDRLLQGYEVTRDELAGLRRSVLLLYRRVEPTVELYGEIAEIAPEWIGEAGHDMSRVTSRLESLKRNVMSLQERGRIAQDQLAARNAEETNHSLMILSVLTAILLPPTLVTGIFGMNTTGLPGTSGPGGTYIAFMAILGSVAGACLLLNRLGLLRFRSEKKRR
>NZ_CP003181.2|WP_025287027.1|1869434_1870568_+|Fic-family-protein
MIVKAYDLSAAVKYHSGAFPPGRLNSEALLAPLMEAAASMARYDARITGMVNSALLIAPLLRQDAVTSSRMEGTISTIEDVYRLEAEQEADSDTPYQEARNDNVETYLYFAALTSAQEALENGMPLGEPLIRTAHQRLLSFGRGKNKRPGSYKNEQNYIGDHGSGKIHYIPIGPEQLAPAMGNLVTFIHDNAWPPLIRTAIAHVEFEALHPFEDGNGRIGRMLITLMLWKLGVLTQPHFFVSGYFETHKDAYIEHMRQVSAKDDWTSWVVFFLTALHEQACLNIRTVEAISNLYATMKERFRGILNSQFHDQVLDFVFATPVFRNDRFIERSRIPAASARSLSRRLVEAGLLRTLQPASGRRAAWYAFDPLLDLLSV
>NZ_CP003181.2|WP_025287026.1|1869075_1869306_+|hypothetical-protein
MLQSIIAGIAVLICALFWMQKLAPRAMAPLWSTVSALLRRMRVMPALAERLSPTASPSSAGCKGCDSCGGSKGGCH
>NZ_CP003181.2|WP_025287036.1|1880650_1881871_-|CCA-tRNA-nucleotidyltransferase
MYPSWLDDPALRDVLAVLPQARPVGGCVRDALAGRPVADIDLAVPMPPEQTLQRLEQAGLHSIPTGLSHGTVTAVSRGQHFEITSLRRDLATDGRHAEVSFTDDWQEDAARRDFTINAMFLSPDGTLHDYFGGLDDLRAGRVRFVGQAGRRVAEDRLRALRFFRFQARYGRWEQGTEPDAAAMQAITAIAGELTQLSAERVWSELRRILTGPHLAAILAAMEQTGVLPVLFPAGYDPAPLVEAVANGMPGEGLAEEAIPRLALLVGEKEPPRTLAERLRLSGQEAGRLTACLDGSVPVWDGAEDTVSLRRLLADDPAQALIDRAWVMLRDERAAHLTRLLAPLNRPNFPLAGRDLLAAGLAVPGPALGHLLDTLRTEWRRRGCQEGEEEKAALLAWVEDGLKAGEI
>NZ_CP003181.2|WP_025287037.1|1881888_1882545_-|CoA-pyrophosphatase
MEVGETVPPCSIASVGRYLRTALALPGPDRVLLRRPEMLADTVSMMRAAAVLVGITEAEEPGIILTLRAAGLSHHAGQVSFPGGRIDPGDASPEHAALREAREEVGLLAEDVHILGRLDPVLTGTGFVVTPVVGLVRPDWVVSIAPAEVAAVFELKLRVLLDPDAPRQDWLEVRGMRHQSWVWPHEQHVIWGATATILMELSLRLRQAEAHLASEPGF
>NZ_CP003181.2|WP_038516443.1|1882548_1883088_-|DUF1285-domain-containing-protein
MGEVAQAGSACCGVLPFLIRRDGTWLYRGSPIARKELVCLFASVLRRDRDGYKLRTPVEEGWIEVEDAPFVAVELDWTGCGRHQTLTFRTNVDQLITAGKDHPIRVAHDILTCEPTPYLHVRDGEDGAPPVEARISRAVYYELVALAEPHDVCCRRMLGVWSCGTFFALGEMPPHAEQG
>NZ_CP003181.2|WP_025287039.1|1883313_1884723_-|purine-permease
MMTGSVSGSAVKKIHPVDQMLPWPRLLTLGVQHVLVMYANAVAAPLILGAAMHLDQAHIAMLINADLFACGIATLIQTIGFGPFGIRLPVIMGVTGLCIPPMLAMAATPGVGLQGIYGAALVGGLFGLAIVPLIGRMLRFFPALVTGSIIMMIGISLMRIGINWAAGGVGAADYGSFHHISAAVVVLLTILLLVRFARGFLSHVAVMAGLLMGYMLTILRGDVDFSGLAAEPWMRVVTPLQFGMPSFHLIPCLTMCLLVTITFIEATGMFMALGSVVGKPVSDEDIRRGLRADGLGTVIGAVFNTFPYVSYSQNVGMVGITGVFSRYVCVASGGIMLALGLVPKLAFIVATIPYSVLGGAAFIMFGMVAATGIKILATVDYRTEHNAMLVVALSVGLGVIPLVAPDFFRMLPAAWRPVVADPIVLTAVSAVLLNAFFSRATRLRQTKTEQRLMAVPFTATEHPSEPVRL
>NZ_CP003181.2|WP_025287040.1|1884885_1885800_+|LysR-family-transcriptional-regulator
MRHLRILTHIVDVARSGSIRRSAERMNITASALTRQIQDFEEELGIPVFERTAQGMRLNAAGELIVQHALTRAADLDQIRSRIADLQGVRRGHVTVVCSQAFARLDLPREIETCRRLHPLVSFSIRVLDHSRALEALRRYEADLALVLQRLPDSEIQPLLHYTLPLCAVMAWDHPLARRDGAPVRLRACLAHRLALPERGMATRQALDEALLRLGQTDPEDIAVDSDSMELLTEYVRRAGAVTFQAASPLQEEEAGDLCLRPLDPRDAEPVSCVLGHLRGRVLSVAAAKFADQLARSLHARYGH
>NZ_CP003181.2|WP_173656028.1|1885817_1886915_+|MoxR-family-ATPase
MRQRVTICVDPVTRGQFPPSPEDMCNIMPVSMFQNADTHSLETSLAALEATGAKIAAVRTEIGKAIFGQRAVIEQTLVTLLSGGHLLLVGVPGLGKSRLVETLGTVLGLHAGRVQFTPDLMPADILGSEVLEETEQGRRAFRFIPGPIFCQLLMADEINRASPRTQSALLQAMQEGKVAVGGVEHALPRPFHVLATQNPVEQEGTYPLPEAQLDRFLLQVTLTYPEAADERAMLLATTGAEEARPQQALTAEDLLQAQRLVRQMPVGDSVVDAILALVRGARPETTEDTALRRHLAWGPGPRAAQALMLATRARALLDGRLAPSLDDVAALAPPVLRHRMALGFAARAEGIQLDQLIERLIERIG
>NZ_CP003181.2|WP_038515578.1|1886926_1887841_+|DUF58-domain-containing-protein
MATSSHRRTLLRAQAEAERLPPLLAAAERVASSVAQGVHGRRRTGTGESFWQFRPFSPGDTPRRIDWRQSARSGQDAPRGWFIRETEWEAAQTVFLWTDRSDSMQFRSAAATVSKLERADLLLLALASLLLRGGERVRLLGAETRFSGGQAALEALAMALDTLAPGEVPPLSTPVPPFSHAVLIGDFLAPLEEIRASLARLAALPVRGCVLQILDPAEVLLPYEGRVRFTGMEADGEVLLPRVNAVREEYARRLAAQQEGLAALCAGMGFTFSIHRTDRGPELPLLALHQALADSRASNSRAST
>NZ_CP003181.2|WP_025287043.1|1887854_1890719_+|DUF4159-domain-containing-protein
MMFLSPWLLLALGLLPILWWLLRATPPAPRQEKFPSLRLLRDLAMREETPARTPWWLLALRIAAAALVIIGLAGPVSTPLEGLPGPAGSSRSPLLLVLDDGWASAPRWPGILRAAEQSLDRTAMDGRQAAFLTTAPGGDGTQPSPSPVMDPALLRARIGALQPQPWATDHRAAAAMLNRLPANGWGVVAIPNGLAQPGDDVFAAALNHLGPVMKVETEGSAPLLLRPPVIQPDRLILRVSHTGRNAGTDHADVLAQTADGRSLSRTRIVLPATPGTAEAPLILPPEIRNQLARLVLDGPQGAGGIVLLDEQSRRRPVGLVAADRTAADTPLLGPLYYLRRALEPYAEVREGDLKTLLSRDLSVLILADRPVENEEERAAILRFVNKGGELIRFAGPHLAAHPDDLLPVRLLDGDRQLGGAMSWGHPAHLAPFPPGPFAGLPPLGMASPDIRRGDIRSGDQKAEDKTGADIRVSRQVMAEPSTDLATHSWAVLEDGTPLVTERSQGAGRIVLFHVTANTDWSTLPLSGLFVEMLKRLVGLAAGVASIPPDTMLSPAETLDGFGQPGSPPQAATPLRAGDFASTPTSPHHPPGLYGPEQGRQALNIGTAAPALLPAAPIPGARNVTAALLGRQHAFGPGLIATALALLALDMLLSLWLRGMLKRGGGNGGAALATPASKPAFFDRRRRMLSLLIGGAVTMAALRPRSAPAASGGIAGNPDSHYPSLAIHLAYVVTGNAEQDAISRMGLAGLADFVSGRTAATIAPPIGVVPGRDDLSFYPLLYWPLTSDQNPDALPETMLAALNDYMAHGGIILIDTRDAGAGAGMNGGHERLLQAIGRSLNVPPLTPLTPEHVLARSFYLLHDFPGRYAGGEVWVQRDEDRANDSVSPVIIGGNDWASAWAVDDQGGHPYATIPGGARQRLLAYRFGTNLVMYALTGNYKGDQVHVPSILDRLGQ
>NZ_CP003181.2|WP_051496909.1|1890731_1893008_+|hypothetical-protein
MQTDHISASDHISASDHISASLGFQPLLPLWLLGTLGVLCLLALLPALLRRARGWPWRLAAFAALLIWLGGPMLVRETRQGLADIALLVIDQSGSMALKDRTKLAEQARSILTRTIPQPGRAGEPPLELRTVTVPEHGRDGTKLFAAIAQGLADIPRDRLAGIVAVTDGQVHDVPPSIAKGTPPAFNAPLHVLLTGRGEETDRRLRMIEAPTYGIVGKTVSLRVAVEDLGVANPANGASPGATPVAELTLRRDGETPVKYTVPIGQEYPITLPVTHEGPSVIDMTAATLPGEVSTINNHAVVTLNGVRDRLRVLLVSGEPHQGERAWRRLLKADPSVDLVHFTILRPPEKDDNTPLNELALIAFPVRELFQQKIRDFDLIILDRFQNRGILPQIYLRNIADYVREGGALLMTAGPEYASPVSLANSPLGAVLPAMPHGQESDDPLSAVIEGGFRPQVTPLGTHHPVTEKLPGAPGGGKDTASEWGSWYRYIATDSPDNPGHDQTGHGQTVLATPDGAPLLILDHVGKGRVALLLSDQIWLWSRGHQGGGPQAELLRRVAHWAMKQPELEERALTAQITQGRLTALLRSPEDIPPGTVTVTDPDGKDTSVPLHITGPGRAEASLPAATPGVWRVRYRPPLSAEPASQEGDKAASSELTAFVAASPPDPVEVADLRATATVLNGAARLSGGSMQWLSPAGVPAIRRVSMDAHAAGNGWIGLRRNDAHLVTGIDALPLLPGWIALPLILLLILAAWRREGR
>NZ_CP003181.2|WP_025287045.1|1893106_1893616_+|tryptophan-rich-sensory-protein
MARQPDFHEHNQDAASTRWSPAVALAGFIAFCLLVAAVDGVFTQGGVRDWYPSLTKPPGTPPNWVFPVVWTTLYIMIGVAGWLLWRRRAWSTLRLWGWQILINALWNPIFFGLHQIGIALIVIMALLALIFRCIQRFKAIDALAAWLFVPYAVWVCYATYLNVGFWWLN

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Crispr_ID: NZ_CP003181_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003181_7

1958039-1958920

TypeI-E

Consensus_repeat	Method
GGTTCCTCCGCGTGCGCGGAGATAGACC	PILER-CR
GGTTCCTCCGCGTGCGCGGAGATAGACC	CRISPRCasFinder
GGTTCCTCCGCGTGCGCGGAGATAGACC	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP003181_7

>merge|NZ_CP003181|7|1958039-1958920|PILER-CR,CRISPRCasFinder,CRT
GGTTCCTCCGCGTGCGCGGAGATAGACCGTGTAACGGTTGTATGGCTGCCCGGTAATCTCGGGTTCCTCCGCGTGCGCGGAGATAGACCCCGAGGCGCTACTCCGGAGCGGACTGGGCATACGGTTCCTCCGCGTGCGCGGAGATAGACCTGGAACCTGAATCACGCGATGTGCGCCTGCCAAGGTTCCTCCGCGTGCGCGGAGATAGACCTAGCGTGCAGGAGACAAGATTGAGGTCTTTGACGGTTCCTCCGCGTGCGCGGAGATAGACCCCCGTTTGTATTCCAGACGATCCAGTCCATTGAGGTTCCTCCGCGTGCGCGGAGATAGACCCGTGGGGAACGTCATCAAGTATGTCATGCGCTAGGTTCCTCCGCGTGCGCGGAGATAGACCTCTCCCAGGGACAGACTGGAGGGGCCTCAGTGGGGTTCCTCCGCGTGCGCGGAGATAGACCTGTTGGGGATAGCATTACGTTTGGTAACGGCTAGGTTCCTCCGCGTGCGCGGAGATAGACCCAAAGCATGATCGTGAAGGCGGCGTCCCATTCGGGTTCCTCCGCGTGCGCGGAGATAGACCTTTCTCCAGCGGAAATTGTTGACTATCTAAACCGGTTCCTCCGCGTGCGCGGAGATAGACCCCGGAGATGGTCGTGTCGGGACTGCCCGATCGCGGTTCCTCCGCGTGCGCGGAGATAGACCCGCGATTGACGGGCTGAACACTGGCAGAGACGGGGTTCCTCCGCGTGCGCGGAGATAGACCCCTCGTGCACTGCCCAGCTAACTACTGCAGCCAGGTTCCTCCGCGTGCGCGGAGATAGACCTCGCTCTTCTTTTTTGCAATCGTGGATGGCGCAGGTTCCTCCGCGTGCGCGGAGATAGATT

>NZ_CP003181|7|5|1958039-1958920|PILER-CR
GGTTCCTCCGCGTGCGCGGAGATAGACC	GTGTAACGGTTGTATGGCTGCCCGGTAATCTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGAGGCGCTACTCCGGAGCGGACTGGGCATAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGGAACCTGAATCACGCGATGTGCGCCTGCCAA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TAGCGTGCAGGAGACAAGATTGAGGTCTTTGAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCCGTTTGTATTCCAGACGATCCAGTCCATTGA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGTGGGGAACGTCATCAAGTATGTCATGCGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCTCCCAGGGACAGACTGGAGGGGCCTCAGTGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGTTGGGGATAGCATTACGTTTGGTAACGGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CAAAGCATGATCGTGAAGGCGGCGTCCCATTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TTTCTCCAGCGGAAATTGTTGACTATCTAAACC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGGAGATGGTCGTGTCGGGACTGCCCGATCGC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGCGATTGACGGGCTGAACACTGGCAGAGACGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCTCGTGCACTGCCCAGCTAACTACTGCAGCCA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCGCTCTTCTTTTTTGCAATCGTGGATGGCGCA
GGTTCCTCCGCGTGCGCGGAGATAGATT

>NZ_CP003181|7|6|1958039-1958920|CRISPRCasFinder
GGTTCCTCCGCGTGCGCGGAGATAGACC	GTGTAACGGTTGTATGGCTGCCCGGTAATCTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGAGGCGCTACTCCGGAGCGGACTGGGCATAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGGAACCTGAATCACGCGATGTGCGCCTGCCAA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TAGCGTGCAGGAGACAAGATTGAGGTCTTTGAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCCGTTTGTATTCCAGACGATCCAGTCCATTGA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGTGGGGAACGTCATCAAGTATGTCATGCGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCTCCCAGGGACAGACTGGAGGGGCCTCAGTGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGTTGGGGATAGCATTACGTTTGGTAACGGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CAAAGCATGATCGTGAAGGCGGCGTCCCATTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TTTCTCCAGCGGAAATTGTTGACTATCTAAACC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGGAGATGGTCGTGTCGGGACTGCCCGATCGC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGCGATTGACGGGCTGAACACTGGCAGAGACGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCTCGTGCACTGCCCAGCTAACTACTGCAGCCA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCGCTCTTCTTTTTTGCAATCGTGGATGGCGCA
GGTTCCTCCGCGTGCGCGGAGATAGATT

>NZ_CP003181|7|4|1958039-1958920|CRT
GGTTCCTCCGCGTGCGCGGAGATAGACC	GTGTAACGGTTGTATGGCTGCCCGGTAATCTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGAGGCGCTACTCCGGAGCGGACTGGGCATAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGGAACCTGAATCACGCGATGTGCGCCTGCCAA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TAGCGTGCAGGAGACAAGATTGAGGTCTTTGAC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCCGTTTGTATTCCAGACGATCCAGTCCATTGA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGTGGGGAACGTCATCAAGTATGTCATGCGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCTCCCAGGGACAGACTGGAGGGGCCTCAGTGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TGTTGGGGATAGCATTACGTTTGGTAACGGCTA
GGTTCCTCCGCGTGCGCGGAGATAGACC	CAAAGCATGATCGTGAAGGCGGCGTCCCATTCG
GGTTCCTCCGCGTGCGCGGAGATAGACC	TTTCTCCAGCGGAAATTGTTGACTATCTAAACC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCGGAGATGGTCGTGTCGGGACTGCCCGATCGC
GGTTCCTCCGCGTGCGCGGAGATAGACC	CGCGATTGACGGGCTGAACACTGGCAGAGACGG
GGTTCCTCCGCGTGCGCGGAGATAGACC	CCTCGTGCACTGCCCAGCTAACTACTGCAGCCA
GGTTCCTCCGCGTGCGCGGAGATAGACC	TCGCTCTTCTTTTTTGCAATCGTGGATGGCGCA
GGTTCCTCCGCGTGCGCGGAGATAGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003181.2\|WP_025287089.1\|1955332_1956040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP003181.2\|WP_025287085.1\|1949335_1951885_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003181.2\|WP_025287086.1\|1952046_1953582_+\|hypothetical-protein	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP003181.2\|WP_011632406.1\|1959705_1959975_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP003181.2\|WP_025287099.1\|1965893_1967432_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP003181.2\|WP_011632400.1\|1956786_1957686_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP003181.2\|WP_025287088.1\|1954175_1955336_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003181.2\|WP_025287098.1\|1965316_1965790_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP003181.2\|WP_025287084.1\|1948430_1949075_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP003181.2\|WP_025287087.1\|1953595_1954183_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003181.2\|WP_011632407.1\|1960131_1961163_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP003181.2\|WP_081370055.1\|1957682_1957979_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP003181.2\|WP_025287093.1\|1961159_1962299_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP003181.2\|WP_038515592.1\|1963966_1964653_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP003181.2\|WP_025287097.1\|1964823_1965276_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NZ_CP003181.2\|WP_025287094.1\|1962311_1962500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003181.2\|WP_025287092.1\|1959377_1959692_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP003181.2\|WP_025287095.1\|1962697_1963963_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP003181.2\|WP_025287090.1\|1956039_1956783_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003181.2\|WP_025287083.1\|1947671_1948418_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900

Protein	Function_ID	Function_description	E-value
NZ_CP003181.2\|WP_025287089.1\|1955332_1956040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.49316e-46
NZ_CP003181.2\|WP_025287085.1\|1949335_1951885_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.71137e-57
NZ_CP003181.2\|WP_025287086.1\|1952046_1953582_+\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	6.93375e-19
NZ_CP003181.2\|WP_011632406.1\|1959705_1959975_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.1538e-47
NZ_CP003181.2\|WP_025287099.1\|1965893_1967432_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP003181.2\|WP_011632400.1\|1956786_1957686_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.32015e-98
NZ_CP003181.2\|WP_025287088.1\|1954175_1955336_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.03766e-119
NZ_CP003181.2\|WP_025287084.1\|1948430_1949075_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	3.98163e-32
NZ_CP003181.2\|WP_025287087.1\|1953595_1954183_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.30381e-08
NZ_CP003181.2\|WP_011632407.1\|1960131_1961163_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP003181.2\|WP_081370055.1\|1957682_1957979_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	4.8713e-27
NZ_CP003181.2\|WP_025287093.1\|1961159_1962299_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP003181.2\|WP_038515592.1\|1963966_1964653_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	3.35405e-66
NZ_CP003181.2\|WP_025287097.1\|1964823_1965276_+\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	6.49548e-41
NZ_CP003181.2\|WP_025287098.1\|1965316_1965790_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	9.03891e-60
NZ_CP003181.2\|WP_025287092.1\|1959377_1959692_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.13326e-53
NZ_CP003181.2\|WP_025287095.1\|1962697_1963963_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP003181.2\|WP_025287090.1\|1956039_1956783_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.16659e-43
NZ_CP003181.2\|WP_025287083.1\|1947671_1948418_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	4.97335e-33

>NZ_CP003181.2|WP_081370055.1|1957682_1957979_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMPATLVITKDVEARYRGYLTSIMLELSAGVYLSPQLSSAVRERTWAVLSEWHSELRRGAIVLAWPDAKSPGGMAIRTLGDAPKEIIDADGVLLVRKS
>NZ_CP003181.2|WP_011632400.1|1956786_1957686_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLHSSRIPHADRAGLLYLARGQLVARDGTLAFLRGPEEDETLPSGEYGIPVQSISMILLGPGSTVSHDALRLLARADTALAAVGEDGVRLYTAPPLGPDRSAVARRQAILWADPKKRVDVARRMYAWRLGEVLPHRDITVLRGIEGARMKEIYRLAAQRAGIVWHGRRYDRANPTAADLPNQALNHAATAMEAAAAIACAAVGAIPQLGFIHEDPGQSLVLDISDLFRDTVTIPTAFAAAKLAERGHENIERLTRRQTGRVLAERSVIPKMIERLKQLFEKETEAIPFLEDDE
>NZ_CP003181.2|WP_025287090.1|1956039_1956783_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MLHLIHLPIEARSFARWARDRGFGPKGTQDNDAVLHHLLTQLFGRQMLQPFRVFTPEQANWSLYAYASQDATALVEQARFSITPDMAEVVSLERLRSKAMPDAKPGQRIGFDVRIRPVRRSAKQHDQESEKMQERDAFLAEALHNHADDTTGMKSANRTREMVYRDWLAERMPWATLETARLAHFQRRRVLRNGNGIEGPDATIHGTMVIVDPAQFSEALRKGIGRHSAYGYGMMMLRPPDALPPDR
>NZ_CP003181.2|WP_025287089.1|1955332_1956040_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MMRWLVLQWRAPLASFGGTTIDSRGVTRDFPALSAVTGLLANALGLDRTDTTQLDRLQERIVFGARREQEPLLGRMTDFQTALLGSNDRGWTTRGRVEGRDGASNAEASTHIRQRDYHADMQMTVVLHLTHAEEAPTLDDIAKALLKPARPLFFGRKPCLPADYVLAAQEENRWVEAEDARAALIAIPGEGLLRAQWSAAPGTGKSLADRRNWRSGLHGGTRRVEEERITPVTRR
>NZ_CP003181.2|WP_025287088.1|1954175_1955336_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MPELRFLQIHTLHNYTASLLNRDDRGLPKYLPYGSAVRTRISSQCLKRHWRMDEGTFSLHRIEGAEEAVRSRDLVTKRLREPLQGTVDVNILDAIEPAFQAAVYGKKGADDKSSRQPLLFGAPELRYLAEQFTRIATSATDPKSAKAAAEDFTKDKLFQNTMKAMRDSVSLPGGLTSALFGRMVTSDPEANIDAPVHVAHAFTTHAEQTESDYFAVVDDLAGVEDTGADHIGSTELTSGLFYGYVVIDVPALVSNLTGVAASNWLAADRKMAAEVAACLIGQIATVSPGAKLGSTAPYGYATTMLVEAGDRQPRSLAEAFRDPAEPTVQDAEDKLHQKLKAFDEAYQTGEDRRLLSLSNDPGIKNVSRTSLPELMQWVRDTILKAA
>NZ_CP003181.2|WP_025287087.1|1953595_1954183_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSDSHNKAQYNINDIIRNVSQKLAELPPGNLASLRRAIPGSGCREFWRLFYDLNLEQYPLPHAQDNESAWEWVMNAITYLTPTGQPVIRSEGKEKHKPSAHDKNISFGQALYNIKINQNRMDRLLNSPFEKRREMIMGIVRTMSASRMRFNMADLAEILTSDQKTIHSTDDPIRKLAKDYYEILYANSRKEKANA
>NZ_CP003181.2|WP_025287086.1|1952046_1953582_+|hypothetical-protein
MYCLLSHPVFRVVTRTETHVLTLPGALAALMLDKVDNFTGLRPHQQHAWHMFLAALGAIALHRADQSAIPETEGEWKDLLLDLTNQAEEPWSLIVDDLSKPAFLQPPVPEGKREVLKNTVYTPDALDILITAKNFDLKAEVAVEAGLDEWVFALVSLQTMQGYSGATKYGIARMNGGFSARPFLGLAPPKGGIGAHLRRDIRAMLAGRGKLLDMYRDYDDEGLALLWLEPWDGKTSLALDQLDPWFIEICRRVRLIKGVDQPIVALAVGSSVARIEAKACNGITGDFWAPVYDSEGKSFSLDARGFSYRVLCKLLFGEKKQRAARLPQSMQLLPDEQDMILVARGMVRGQGKTEGFHERIIPTQRRIIDAINDDARRLELAEIADKQQQEVAQIISALRLGCAVVYAGGKDPSNDDYAYAGAYIDRLQAEAEADFFTVIHKRFEDDNGAKLFYLKHLIFYANDLLVKASDSIPCSIQNRWRARVYAKNEFDRKLWKKNECPFLNDYNLLCS
>NZ_CP003181.2|WP_025287085.1|1949335_1951885_+|CRISPR-associated-helicase/endonuclease-Cas3
MPITLPPFPWAKFAEPDCWLPLITHLGDVGDCFEALLNLPLYRARLATIIEKEPDRVTIQRLCALAFLHDIGKLNSGFQGKILTKARKGHLLEGYHVLWRKEAGLQDALGLREDLSQWGEAMRSLFLAALAHHGRPIMVVGQEPVQADWAARTGYNPTEAARAIGQACRTRYPDAFGPGPHLPPHTELQHFFAGLVALADQIGSRDCDFPLDRTIRPATKAADVLRNINMDVSRLRQALKPVEPWQLFGWAEGTKLRPMQQALLELSLDIRLAALESETGSGKTEAAFLRFLRLFRAGLVDGLYFAVPTRAAAAQLHRRINHAVQAAFGGECFLALPGYMKAGTSEGWAFLGHRVEWSDNPDEAQKQARWAAETPRRFLAAPVAVGTVDQVMLAGLQVKWSHFRSAALARSYLVIDEVHASDSYMSAVMDRIVQNHVAHGGHALLMSATLGSATRASLLGARKKRKTDSHSPVHAPYPSLSWAEGEERQKQEIHLGIDLTEYQKTVSVNAAPLIADPHAIAGMALEAARQGARVLVIRNTVDQVIATQRAIEALDAKAPTLSVNGIRCPHHSRFAAEDRLLLDHAVEQAMGKHSVPGGRIVCGSQTVEQSLDIDADFMMTDLCPIDVLLQRIGRLHRHAGRHDRPDAFRNARCVVLVPEILSPEINLLRFGLGISRDGGGVYTDITGLESVRRMINDGAIWTIPQDNRRLVETGTDPQTLTVLAQQLGPAWTQARNAVVGGRSAQGTIGRMNLVDCTRAFDGSIDDCFPNDTNIVTRLGADRTALLFAPDTRGPFGEKVSQIFVPGHWVDASVASATGTEWIQPSSEQLVFESAGLSYSRFGLTRSYNT
>NZ_CP003181.2|WP_025287084.1|1948430_1949075_-|LysE-family-translocator
MDAFSAIIRFSAAAALLTVTPGLDTALVVRTGTVEGPRQAVLAGAGISAGVLSWGMITALGLGALLAASEYAYRVVQMVGAFYLAWLGVTMMRRVFAGGGSPIVFPAGQGRLVAKPNWFLRGMMTNLLNPKVGVFYVSFLPQFLPPELPAVSFGALLSGIHAFMGLVFFSAVAVGTVPLQRLLTHPATSRVLDGITGTVMIGFAARLIMEKRSL
>NZ_CP003181.2|WP_025287083.1|1947671_1948418_+|prepilin-peptidase
MGWLLLLTAPFIGSFFGVLIRRWPDGHGIVFGRSRCEHCGHPLSPAQMIPLLSFLWLRGRCRQCGSPIDPFHPMIECAALAVAVCACAARGINNPFLVGDCLLGWALLALACIDLRHWRLPDALTLPLILLGMGEAIWLDPATLLWPRVTGIVVAYGTLTALGVLYRLLRGREGLGAGDAKLFAAGAAWTGLTALPGILLLAALGGLIHAAIRASRGSSFSPHAAIPFGPALAAAIWIVRLLMFQDME
>NZ_CP003181.2|WP_025287092.1|1959377_1959692_+|50S-ribosomal-protein-L21
MFAVIRTGGKQYRVTPNAVLKVEKLEAEPGSTITFTDVLAVGGEGNLTIGAPVVAGASVTATVIAQDRLDKIVVFKKRRRQNSRRKNGHRQHVTVLRVGDIVAA
>NZ_CP003181.2|WP_011632406.1|1959705_1959975_+|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDTEGRRLGVKKFGGESVVAGNIIVRQRGTKVQAGPNVGVGRDHTLFALTDGHVKFLRRAEGRVQVAVTPLAIAAE
>NZ_CP003181.2|WP_011632407.1|1960131_1961163_+|GTPase-ObgE
MKFLDQAKIYVKSGDGGDGVIAFRREKYIEFGGPDGGNGGRGGDIIVEAVANLNTLIDFRYTQHFRAPKGGNGAGSDRTGAAAPDVLIKVPVGTQILEDDRETLIADLDVPGKRITLCRGGDGGHGNAHFKSSTNRAPRRADKGWPGEERWVWLRLKLIADAGLVGLPNAGKSTFLSVVSAARPKIADYPFTTLHPQLGVVRLSLQEEFVLADIPGLIEGAHEGAGLGDRFLGHVERCAVLIHLIDGAAGDVVKAWRTVREEMEGYGGGLTEKPEIIVLNKCDGMTPREASARRSALAKASGQTVTVISGVTGEGVQPLLRQVMTYVAQSREERRKAMSGTSA
>NZ_CP003181.2|WP_025287093.1|1961159_1962299_+|glutamate-5-kinase
MSGHEQDEALPRLTTARRLVIKLGSALVVDSKAATPRIEWLRGVAADIAMLRRQGVQVIVVSSGAIALARQALKLTQPRLRLEEKQAAASVGQIRLAQAWSEALSAEGMTAAQLLLTLGDTEDRRRYLNARATLSALLGMGCVPVINENDSVATAEIRFGDNDRLAARVAEMVQADQLVLLSDIDGLYTADPRRDPEASHLPVVRAITPEIEAMGGEPPPGYSSGGMRTKLTAARIATGAGCAMAIALGHTDHPLRALAEGARCTWFLPLPEGRTARKRWIAGSLQPMGTLTVDDGARRALLRGGSLLPAGVVSVDGRFERGDPVLVQGLDGTVLARGLSAYASRDASRIVGRRSEDIESILGWRGRDELVHRDDLVLI
>NZ_CP003181.2|WP_025287094.1|1962311_1962500_-|hypothetical-protein
MAMHTKSLDEEHVYETALYTLRNVEKLLAFLPVPLTRELIQAALMALKEECVVESKEIVEYH
>NZ_CP003181.2|WP_025287095.1|1962697_1963963_+|glutamate-5-semialdehyde-dehydrogenase
MLDGVSETAQQWIAQAGRSARMASSVLARVPHEVRQNALRQAASALRDDEAAILAANAIDLERSNASAAFKDRLTLTRSRVAAMADGLEQIADLPDPLSRVLSEWERPNGLRIRRIAAPIGVIGMIYESRPNVGADAAGIAIKSGNAVLLRGGSESQHSARAIHAAMQAGLRKAGLPEEAVQIAPDTDRAYVAAMLAGNQVLDLIIPRGGKSLVERVQKEARVPVLAHAEGLCHTYIHKAADPEKARSILANAKMRRTGICGATETLLIDAAIAGSLLPILVEDLSALGCTFRADDAARAIMPGLPSASDADFDTEWLDAILSIKVVDGIDAALAHITRHGSEHTEAIITEDEAVAEYFLSRVQSAVAMWNASTQFCDGGEFGFGAEIGIATGRIHARGPVGPEQLTTYRYLVLGNGQIRP
>NZ_CP003181.2|WP_038515592.1|1963966_1964653_+|nicotinate-nucleotide-adenylyltransferase
MPHFSSTPVTDPLPRFGDRRRIRIGLLGGSFNPAHAGHALIARHFRQKLRLHQVWLMVSPGNPLKSGEDMAPLAARLASARAIADGRHIIATTIESRLGTRYTADTLARLRTLFPCARFVWLMGADNLTGFPRWRDWRGIAADWPFAVHPRPGYTARALSGQAASILRRYRRPEREAPLLADLPPPTWMMLRLPQSPLSATQIRAGFNHPFTGLPSTARAESGPAESG
>NZ_CP003181.2|WP_025287097.1|1964823_1965276_+|ribosome-silencing-factor
MAVSPGSPRKKAAAAGPRAIGAKAPEAQDQAVAARERLDAIQAVIIESLEDDKAEDIITLDLSGRAAFTDRMIIATGLADRQISAMAMHLQQKLRDAGVGRVPVEGAGGSDWVLIDAGDIVVHLFKPEARALYRLEKMWSAELDDAESDA
>NZ_CP003181.2|WP_025287098.1|1965316_1965790_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MTAPWRIIAVGRMRGSEEEALFQRYAARLRPALTVTEIAEARGSTAEIRRRETSALLAALPPACIVVAMDLGGRAHDSEALAALARRWREQPLPVCFMIGGAEGLEQPVLDRADHVLSLGPMTWPHLLVRPLLAEQLYRAQAIATNHPYHRTGRPSG
>NZ_CP003181.2|WP_025287099.1|1965893_1967432_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSASPPPRPVMLVILDGWGWREERNDNAIRLARTPAFDRLWNSAPTTFLRTSGLDVGLPDGQMGNSEVGHMNIGAGRVVMQELPRIDAALQDGSVNDLPALRDFITALRQSGGTCHLFGLVSDGGVHAHQDHGAALAQILTRAGIRVAVHAFTDGRDTPPASARRFLTKFLPALPEGATLATLCGRFYAMDRDNRWDRVEKAYRMMVEAEGERYSDPCDAITDAYAREFSDEFIRPAVFGDYAGMKDGDGLLCFNFRSDRVRELLTALLDPAFQGFERPRFLHFSGALGMTRYSTELESLMQTLFPFQEMTNLLGHVVSAAGKRQLRMAETEKYPHVTYFLNGGEEEVLENEDRIMVPSPKVATYDLKPEMSAPELTEKAVTAIGSGQYDLIVLNFANPDMVGHTGSLEAAIRAVETVDTGLGRIVDAITAVGGALFVTADHGNCELMRDPDTGGPHTAHTTNLVPALLYDSSAPIGTRRLTSGKLADIAPTLLDLMQLPQPPEMTGQSLLA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP047184	Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence	5284-5311	6	0.786
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	60301-60328	6	0.786
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP041156	Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence	113256-113283	6	0.786
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP047181	Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed1, complete sequence	10553-10580	6	0.786
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	608054-608081	6	0.786
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	MN694047	Marine virus AFVG_250M130, complete genome	6400-6431	7	0.781
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	MN694132	Marine virus AFVG_250M1196, complete genome	54046-54077	7	0.781
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	MT939486	Erwinia phage pEa_SNUABM_12, complete genome	145812-145843	7	0.781
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NC_041917	Serratia phage BF, complete genome	145784-145815	7	0.781
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	KJ000058	Salmonella phage STP4-a, complete genome	47610-47641	7	0.781
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	MT939488	Erwinia phage pEa_SNUABM_50, complete genome	144949-144980	7	0.781
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	327227-327258	7	0.781
NZ_CP003181_3	3.1\|1579232\|28\|NZ_CP003181\|PILER-CR	1579232-1579259	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1662749-1662776	7	0.75
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	516761-516788	7	0.75
NZ_CP003181_3	3.2\|1579298\|28\|NZ_CP003181\|PILER-CR	1579298-1579325	28	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	321952-321979	7	0.75
NZ_CP003181_6	6.6\|1879998\|33\|NZ_CP003181\|CRISPRCasFinder,CRT	1879998-1880030	33	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	370815-370847	7	0.788
NZ_CP003181_6	6.13\|1879999\|33\|NZ_CP003181\|PILER-CR	1879999-1880031	33	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	370815-370847	7	0.788
NZ_CP003181_1	1.5\|1531685\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531685-1531716	32	NZ_CP026278	Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence	38029-38060	8	0.75
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NC_031020	Morganella phage vB_MmoM_MP1, complete genome	107251-107282	8	0.75
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	HQ331142	Salmonella phage S16, complete genome	47588-47619	8	0.75
NZ_CP003181_4	4.1\|1604545\|33\|NZ_CP003181\|CRISPRCasFinder	1604545-1604577	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	166738-166770	8	0.758
NZ_CP003181_6	6.6\|1879998\|33\|NZ_CP003181\|CRISPRCasFinder,CRT	1879998-1880030	33	NZ_CP049031	Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence	81396-81428	8	0.758
NZ_CP003181_6	6.6\|1879998\|33\|NZ_CP003181\|CRISPRCasFinder,CRT	1879998-1880030	33	NZ_CP019083	Paludisphaera borealis strain PX4 plasmid PALBO1, complete sequence	68357-68389	8	0.758
NZ_CP003181_6	6.13\|1879999\|33\|NZ_CP003181\|PILER-CR	1879999-1880031	33	NZ_CP049031	Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence	81396-81428	8	0.758
NZ_CP003181_6	6.13\|1879999\|33\|NZ_CP003181\|PILER-CR	1879999-1880031	33	NZ_CP019083	Paludisphaera borealis strain PX4 plasmid PALBO1, complete sequence	68357-68389	8	0.758
NZ_CP003181_7	7.6\|1958372\|33\|NZ_CP003181\|PILER-CR,CRISPRCasFinder,CRT	1958372-1958404	33	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	600232-600264	8	0.758
NZ_CP003181_7	7.6\|1958372\|33\|NZ_CP003181\|PILER-CR,CRISPRCasFinder,CRT	1958372-1958404	33	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	105981-106013	8	0.758
NZ_CP003181_7	7.6\|1958372\|33\|NZ_CP003181\|PILER-CR,CRISPRCasFinder,CRT	1958372-1958404	33	CP000666	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05, complete sequence	7758-7790	8	0.758
NZ_CP003181_1	1.7\|1531807\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531807-1531838	32	NZ_CP030355	Novosphingobium sp. P6W plasmid pP6W2, complete sequence	12411-12442	9	0.719
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	ACSJ01000012	Clostridium phage D-1873 CLG.Contig163, whole genome shotgun sequence	2065-2096	9	0.719
NZ_CP003181_1	1.10\|1531990\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531990-1532021	32	NZ_CP030852	Runella sp. HYN0085 plasmid unnamed2, complete sequence	74988-75019	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1425016-1425047	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1481165-1481196	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1347459-1347490	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1234310-1234341	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	608602-608633	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1409669-1409700	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1346481-1346512	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1391855-1391886	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1391846-1391877	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	954002-954033	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1347451-1347482	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1346804-1346835	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1347442-1347473	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	953947-953978	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1222743-1222774	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1348295-1348326	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1425162-1425193	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1425144-1425175	9	0.719
NZ_CP003181_1	1.13\|1532173\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532173-1532204	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1425129-1425160	9	0.719
NZ_CP003181_1	1.14\|1532234\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532234-1532265	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	829852-829883	9	0.719
NZ_CP003181_1	1.14\|1532234\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532234-1532265	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	753442-753473	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1204072-1204103	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1204047-1204078	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1204079-1204110	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1130999-1131030	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1077601-1077632	9	0.719
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	822152-822183	9	0.719
NZ_CP003181_1	1.21\|1532661\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532661-1532692	32	MT074482	Salmonella phage horsemountain, partial genome	33987-34018	9	0.719
NZ_CP003181_6	6.6\|1879998\|33\|NZ_CP003181\|CRISPRCasFinder,CRT	1879998-1880030	33	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	135314-135346	9	0.727
NZ_CP003181_6	6.13\|1879999\|33\|NZ_CP003181\|PILER-CR	1879999-1880031	33	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	135314-135346	9	0.727
NZ_CP003181_7	7.10\|1958616\|33\|NZ_CP003181\|PILER-CR,CRISPRCasFinder,CRT	1958616-1958648	33	MG676225	Aeromonas phage AhSzw-1, complete genome	39423-39455	9	0.727
NZ_CP003181_7	7.10\|1958616\|33\|NZ_CP003181\|PILER-CR,CRISPRCasFinder,CRT	1958616-1958648	33	NC_047949	Aeromonas phage AhSzq-1, partial genome	42154-42186	9	0.727
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	52118-52149	10	0.688
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	52118-52149	10	0.688
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	52116-52147	10	0.688
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	52118-52149	10	0.688
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	223599-223630	10	0.688
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NZ_CP042840	Enterococcus sp. DA9 plasmid unnamed4	65953-65984	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1453245-1453276	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1453392-1453423	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	949552-949583	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	893423-893454	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1452967-1452998	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1452911-1452942	10	0.688
NZ_CP003181_1	1.15\|1532295\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1532295-1532326	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	940526-940557	10	0.688
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	51696-51727	11	0.656
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	52121-52152	11	0.656
NZ_CP003181_1	1.4\|1531624\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531624-1531655	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	54989-55020	11	0.656
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	140150-140181	11	0.656
NZ_CP003181_1	1.8\|1531868\|32\|NZ_CP003181\|CRT,CRISPRCasFinder,PILER-CR	1531868-1531899	32	NZ_AP022342	Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence	215166-215197	11	0.656

1. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP047184 (Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gatgccggtgcccatgatcgacgcgaac	Protospacer
.* .*********.********* ***

2. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gatgccggtgcccatgatcgacgcgaac	Protospacer
.* .*********.********* ***

3. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gaaaccggtgatcgtgatcgacggtgac	Protospacer
.********* .************ .*

4. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP047181 (Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gatgccggtgcccatgatcgacgcgaac	Protospacer
.* .*********.********* ***

5. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.786

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
ataagcggtgcccgcgatcgacgggccc	Protospacer
* ** *********.**********

6. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to MN694047 (Marine virus AFVG_250M130, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
acttgtcatatttatcaccaagtttttcttgc	Protospacer
  ******* *** *************  **

7. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to MN694132 (Marine virus AFVG_250M1196, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
acttgtcatatttatcaccaagtttttcttgc	Protospacer
  ******* *** *************  **

8. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcaccaagtttttgatga-	CRISPR spacer
tgttgtcatttttttcataaag-tactggtaat	Protospacer
*****************. *** * .**.*.*

9. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcaccaagtttttgatga-	CRISPR spacer
tgttgtcatttttttcataaag-tactggtaat	Protospacer
*****************. *** * .**.*.*

10. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to KJ000058 (Salmonella phage STP4-a, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcacca----agtttttgatga	CRISPR spacer
ggttgtcattttattctccaagttagtttttg----	Protospacer
 *********** *** ***    ********

11. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 7, identity: 0.781

tgttgtcatttttttcaccaagtttttgatga-	CRISPR spacer
tgttgtcatttttttcataaag-tactggtaat	Protospacer
*****************. *** * .**.*.*

12. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 7, identity: 0.781

---ccagatcggcggactgactgagctgccggccc	CRISPR spacer
tggccgcat---cgggctgattgagctgccggccc	Protospacer
   **. **   ***.****.**************

13. spacer 3.1|1579232|28|NZ_CP003181|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gccacaccgcgtatcgtgcgcccccgtt	CRISPR spacer
atcacaccgcatatcgtgcgcccgcagg	Protospacer
..********.************ *.

14. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gcaaccggtgctggtgatcgacgggcgc	Protospacer
. *********. ************ .

15. spacer 3.2|1579298|28|NZ_CP003181|PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.75

aaaaccggtgcccgtgatcgacgggaaa	CRISPR spacer
gaaaccggtgcccgcgatcgactcgccg	Protospacer
.*************.*******  *  .

16. spacer 6.6|1879998|33|NZ_CP003181|CRISPRCasFinder,CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.788

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
atcgccgaaccgaaaacgatgaagcggctgcgc	Protospacer
***.. * .*****.******* **********

17. spacer 6.13|1879999|33|NZ_CP003181|PILER-CR matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.788

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
atcgccgaaccgaaaacgatgaagcggctgcgc	Protospacer
***.. * .*****.******* **********

18. spacer 1.5|1531685|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026278 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence) position: , mismatch: 8, identity: 0.75

tacgtccactatgaaggcgatgatcaagcggc	CRISPR spacer
taactcctctatgaaggcgatgagcaataccc	Protospacer
**  *** *************** ***    *

19. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_031020 (Morganella phage vB_MmoM_MP1, complete genome) position: , mismatch: 8, identity: 0.75

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
gttggtcattttattcaccatgtttttggaaa	Protospacer
  * ******** ******* *******. .*

20. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to HQ331142 (Salmonella phage S16, complete genome) position: , mismatch: 8, identity: 0.75

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
ggttgtcattttattctccaagttaattttgt	Protospacer
 *********** *** *******  *  **

21. spacer 4.1|1604545|33|NZ_CP003181|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

agctgcgcggtgtcgcgcgtgtgcctgtcagcc	CRISPR spacer
agccgcgcggtgtcgcgcgtgcgcgagtacggg	Protospacer
***.*****************.**  **  *

22. spacer 6.6|1879998|33|NZ_CP003181|CRISPRCasFinder,CRT matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 8, identity: 0.758

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
tgctggatgccgaaggcgatgacgaggctgcga	Protospacer
  *  *.********.******** *******

23. spacer 6.6|1879998|33|NZ_CP003181|CRISPRCasFinder,CRT matches to NZ_CP019083 (Paludisphaera borealis strain PX4 plasmid PALBO1, complete sequence) position: , mismatch: 8, identity: 0.758

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
ttcatgttgccgaagacgatggcgcgcgtcggg	Protospacer
 ***** **************.****  *  *

24. spacer 6.13|1879999|33|NZ_CP003181|PILER-CR matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 8, identity: 0.758

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
tgctggatgccgaaggcgatgacgaggctgcga	Protospacer
  *  *.********.******** *******

25. spacer 6.13|1879999|33|NZ_CP003181|PILER-CR matches to NZ_CP019083 (Paludisphaera borealis strain PX4 plasmid PALBO1, complete sequence) position: , mismatch: 8, identity: 0.758

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
ttcatgttgccgaagacgatggcgcgcgtcggg	Protospacer
 ***** **************.****  *  *

26. spacer 7.6|1958372|33|NZ_CP003181|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggggaacgtcatcaagtatgtcatgcgcta	CRISPR spacer
tatgacttacgtcatgacgtatgtcatgcgcta	Protospacer
..**.   ******* * ***************

27. spacer 7.6|1958372|33|NZ_CP003181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggggaacgtcatcaagtatgtcatgcgcta	CRISPR spacer
tatgacttacgtcatgacgtatgtcatgcgcta	Protospacer
..**.   ******* * ***************

28. spacer 7.6|1958372|33|NZ_CP003181|PILER-CR,CRISPRCasFinder,CRT matches to CP000666 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggggaacgtcatcaagtatgtcatgcgcta	CRISPR spacer
tatgacttacgtcatgacgtatgtcatgcgcta	Protospacer
..**.   ******* * ***************

29. spacer 1.7|1531807|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 9, identity: 0.719

atgcagtgggccggtgggctcagcgtggacca	CRISPR spacer
ttgcagggggccggtgtgctcagcgaagcggc	Protospacer
 ***** ********* ******** .*

30. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to ACSJ01000012 (Clostridium phage D-1873 CLG.Contig163, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
ctttttcatttttttcatcaagtttttttaat	Protospacer
. ** ************.*********   .

31. spacer 1.10|1531990|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP030852 (Runella sp. HYN0085 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aagacggggggcatttttttgacatcctccgg	CRISPR spacer
gtagcaggggggattttttcgacatcctctgt	Protospacer
. ..*.***** *******.*********.*

32. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

33. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

34. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

35. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcggactgacggaactgccggcca	Protospacer
**. ..  ********** **.*********

36. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcggactgacggaactgccggcca	Protospacer
**. ..  ********** **.*********

37. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgtgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

38. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

39. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

40. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

41. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcggactgacggaactgccggcca	Protospacer
**. ..  ********** **.*********

42. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

43. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

44. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

45. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcggactgacggaactgccggcca	Protospacer
**. ..  ********** **.*********

46. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcggactgacggaactgccggcca	Protospacer
**. ..  ********** **.*********

47. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacagagctgccggcca	Protospacer
**. ..  ****.***** ************

48. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

49. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

50. spacer 1.13|1532173|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccagatcggcggactgactgagctgccggccc	CRISPR spacer
ccgcgcgcgcgggctgacggagctgccggcca	Protospacer
**. ..  ****.***** ************

51. spacer 1.14|1532234|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtccggcgtccggcactgtccagactgccgac	CRISPR spacer
ctccggcgtccggcacgatccagacgcatccc	Protospacer
 *************** .*******   .  *

52. spacer 1.14|1532234|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtccggcgtccggcactgtccagactgccgac	CRISPR spacer
ctccggcgtccggcacgatccagacgcatccc	Protospacer
 *************** .*******   .  *

53. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
agccgccacctgctggaacagcggcaaggaca	Protospacer
 ************ **** ******. *...

54. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
agccgccacctgctggaacagcggcaaggaca	Protospacer
 ************ **** ******. *...

55. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
agccgccacctgctggaacagcggcaaggaca	Protospacer
 ************ **** ******. *...

56. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
agccgccacctgctggaacagcggcaaggaca	Protospacer
 ************ **** ******. *...

57. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
agccgccacctgctggaacagcggcaaggaca	Protospacer
 ************ **** ******. *...

58. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
cgcctcgacctgcgggaaaagcgcgatgcgca	Protospacer
**** * ****************  ..* *.

59. spacer 1.21|1532661|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to MT074482 (Salmonella phage horsemountain, partial genome) position: , mismatch: 9, identity: 0.719

actgcacccctcccggcatctctcagcaggac	CRISPR spacer
aatagaccccccccggcatctctccgcaatca	Protospacer
* *. *****.************* ***.

60. spacer 6.6|1879998|33|NZ_CP003181|CRISPRCasFinder,CRT matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 9, identity: 0.727

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
aacccctcgccgacgacgatgacgcggatgcgg	Protospacer
* * .  .***** ************* ****

61. spacer 6.13|1879999|33|NZ_CP003181|PILER-CR matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 9, identity: 0.727

atcatggtgccgaagacgatgacgcggctgcgc	CRISPR spacer
aacccctcgccgacgacgatgacgcggatgcgg	Protospacer
* * .  .***** ************* ****

62. spacer 7.10|1958616|33|NZ_CP003181|PILER-CR,CRISPRCasFinder,CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 9, identity: 0.727

tttctccagcggaaattgttgactatctaaacc	CRISPR spacer
tagtaaccacggtaattgttgactatgtaaacc	Protospacer
*  .  * .*** ************* ******

63. spacer 7.10|1958616|33|NZ_CP003181|PILER-CR,CRISPRCasFinder,CRT matches to NC_047949 (Aeromonas phage AhSzq-1, partial genome) position: , mismatch: 9, identity: 0.727

tttctccagcggaaattgttgactatctaaacc	CRISPR spacer
tagtaaccacggtaattgttgactatgtaaacc	Protospacer
*  .  * .*** ************* ******

64. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 10, identity: 0.688

agacgattggactcccggtgacgcgggatact	CRISPR spacer
agacgattgaactcccggtgaagcacatcttg	Protospacer
*********.*********** **. . . .

65. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 10, identity: 0.688

agacgattggactcccggtgacgcgggatact	CRISPR spacer
agacgattgaactcccggtgaagcacatcttg	Protospacer
*********.*********** **. . . .

66. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 10, identity: 0.688

agacgattggactcccggtgacgcgggatact	CRISPR spacer
agacgattgaactcccggtgaagcacatcttg	Protospacer
*********.*********** **. . . .

67. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 10, identity: 0.688

agacgattggactcccggtgacgcgggatact	CRISPR spacer
agacgattgaactcccggtgaagcacatcttg	Protospacer
*********.*********** **. . . .

68. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.688

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
tcacatcatctttttcaacaagtttttgcgcc	Protospacer
*  ..****.******* **********

69. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP042840 (Enterococcus sp. DA9 plasmid unnamed4) position: , mismatch: 10, identity: 0.688

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
caaggaattttttttcaccaattatttgatgt	Protospacer
..  *   ************* * *******

70. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

71. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

72. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

73. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

74. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

75. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

76. spacer 1.15|1532295|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgccacctgcgggaaaagcggcgcgagtt	CRISPR spacer
ggccgccacctgctggaacagcggcaatgaca	Protospacer
 ************ **** ******.  ...

77. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 11, identity: 0.656

agacgattggactcccggtgacgcgggatact	CRISPR spacer
ggacgattgaactcccggtgaagcacatcttg	Protospacer
.********.*********** **. . . .

78. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 11, identity: 0.656

agacgattggactcccggtgacgcgggatact	CRISPR spacer
ggacgattgaactcccggtgaagcacatcttg	Protospacer
.********.*********** **. . . .

79. spacer 1.4|1531624|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 11, identity: 0.656

agacgattggactcccggtgacgcgggatact	CRISPR spacer
ggacgattgaactcccggtgaagcacatcttg	Protospacer
.********.*********** **. . . .

80. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 11, identity: 0.656

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
aaggaatttttttttcaccaattatttgatgt	Protospacer
 .  . . ************* * *******

81. spacer 1.8|1531868|32|NZ_CP003181|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 11, identity: 0.656

tgttgtcatttttttcaccaagtttttgatga	CRISPR spacer
aaggaatttttttttcaccaattatttgatgt	Protospacer
 .  . . ************* * *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

976576 : 985564

Acinetobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286326.1\|976576_977305_-	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	1.9e-06	37.7
WP_025286327.1\|977409_978612_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_025286328.1\|978622_979111_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_095532084.1\|979112_980030_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.6e-56	46.2
WP_025286330.1\|980113_981154_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.8e-58	37.4
WP_025286331.1\|981162_981777_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-53	52.4
WP_025286332.1\|981901_983560_-	glycosyltransferase family protein	D6PFH9	uncultured_phage	2.1e-08	24.5
WP_025286333.1\|983556_984018_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_025286334.1\|984025_985564_-	anthranilate synthase component I	S4VNU7	Pandoravirus	1.4e-38	39.4

DBSCAN-SWA_2

1515203 : 1574094

Acidithiobacillus_phage(20.0%)

terminase,capsid,integrase,tRNA,portal,head

attL 1545656:1545670|attR 1562266:1562280

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286765.1\|1515203_1517846_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.0e-74	37.1
WP_025320499.1\|1518370_1518580_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025286766.1\|1518703_1519678_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_051496884.1\|1519674_1520121_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_025286768.1\|1520117_1520432_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_038515528.1\|1520446_1522945_+	transporter	NA	NA	NA	NA
WP_072490552.1\|1522925_1523687_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_051496885.1\|1523689_1525429_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_025320495.1\|1525695_1526388_+	conjugal transfer protein	NA	NA	NA	NA
WP_051496993.1\|1526492_1527416_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_025320493.1\|1527417_1527885_+	hypothetical protein	NA	NA	NA	NA
WP_081371691.1\|1528064_1529252_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_025286774.1\|1529393_1529984_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_025286775.1\|1530016_1530580_-	S26 family signal peptidase	NA	NA	NA	NA
WP_011632077.1\|1532853_1533141_-	type I-E CRISPR-associated endoribonuclease Cas2	NA	NA	NA	NA
WP_011632078.1\|1533137_1534085_-	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_025286776.1\|1534084_1534768_-	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_025286777.1\|1534769_1535444_-	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_025286778.1\|1535443_1536508_-	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_025286779.1\|1536507_1537011_-	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_025286780.1\|1537007_1538465_-	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_025286781.1\|1538840_1541339_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_081366662.1\|1542082_1542526_-	cytidine deaminase	NA	NA	NA	NA
WP_025286782.1\|1542545_1543583_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.6e-123	64.2
WP_011632087.1\|1543937_1544426_+	adenosylmethionine decarboxylase	A0A1D7SEZ2	Cyanophage	9.6e-15	40.7
WP_011632088.1\|1544548_1545430_+	polyamine aminopropyltransferase	NA	NA	NA	NA
WP_025286783.1\|1545565_1545979_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
1545656:1545670	attL	NA	NA	NA	NA
WP_025286785.1\|1546436_1547405_+	glycosyltransferase	NA	NA	NA	NA
WP_125918897.1\|1547495_1547738_-	hypothetical protein	NA	NA	NA	NA
WP_125918898.1\|1547739_1548612_+	hypothetical protein	NA	NA	NA	NA
WP_025286788.1\|1549320_1549851_+	UPF0262 family protein	NA	NA	NA	NA
WP_011632096.1\|1549931_1551020_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_038515531.1\|1551019_1551871_+	DUF2272 domain-containing protein	NA	NA	NA	NA
WP_173656025.1\|1551914_1552340_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_025286790.1\|1552508_1553528_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.3e-48	40.8
WP_025286791.1\|1553608_1554154_-	hypothetical protein	NA	NA	NA	NA
WP_025286792.1\|1554350_1555322_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_095532114.1\|1555326_1557177_+	single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
WP_164504159.1\|1557383_1557878_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_072632652.1\|1558291_1558597_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_038515535.1\|1558662_1558908_-	hypothetical protein	NA	NA	NA	NA
WP_125918899.1\|1558910_1559132_-	hypothetical protein	NA	NA	NA	NA
WP_125918900.1\|1559128_1559317_-	hypothetical protein	NA	NA	NA	NA
WP_025286798.1\|1559313_1559709_-	hypothetical protein	NA	NA	NA	NA
WP_164504160.1\|1559739_1560117_+	hypothetical protein	NA	NA	NA	NA
WP_038515540.1\|1560370_1561069_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	9.0e-06	29.0
WP_025286799.1\|1561633_1562110_+	hypothetical protein	NA	NA	NA	NA
WP_025286800.1\|1562106_1562544_+	hypothetical protein	NA	NA	NA	NA
1562266:1562280	attR	NA	NA	NA	NA
WP_164504161.1\|1562530_1563607_+	toprim domain-containing protein	A0A2R3UAP7	Myoviridae_environmental_samples	7.6e-12	36.8
WP_025286802.1\|1563599_1565435_+	hypothetical protein	NA	NA	NA	NA
WP_072632653.1\|1565684_1566365_+	hypothetical protein	NA	NA	NA	NA
WP_164504162.1\|1566504_1567164_+\|terminase	terminase small subunit	NA	NA	NA	NA
WP_025286805.1\|1567156_1569325_+\|terminase	phage terminase large subunit family protein	H6WYG7	Enterobacter_phage	4.1e-65	30.0
WP_025286806.1\|1569321_1569546_+	hypothetical protein	NA	NA	NA	NA
WP_025286807.1\|1569552_1571091_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.8e-78	39.6
WP_025286808.1\|1571087_1572587_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.6e-36	43.6
WP_025286809.1\|1572588_1572951_+\|head	head decoration protein	NA	NA	NA	NA
WP_025286810.1\|1573005_1574094_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	5.8e-52	34.8

DBSCAN-SWA_3

1578783 : 1588813

Acinetobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286818.1\|1578783_1579179_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	9.5e-21	43.3
WP_072632656.1\|1579658_1579952_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_081371632.1\|1580305_1581055_+	phage antirepressor KilAC domain-containing protein	A0A2D1GNK4	Pseudomonas_phage	2.4e-41	47.6
WP_025286821.1\|1581054_1581426_+	hypothetical protein	NA	NA	NA	NA
WP_025286822.1\|1581489_1581822_-	type II toxin-antitoxin system HicB family antitoxin	R4JJS9	Burkholderia_phage	1.0e-28	52.7
WP_025286823.1\|1581818_1582073_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	4.7e-13	48.8
WP_025286824.1\|1582145_1587116_+	hypothetical protein	A0A173GC04	Salmonella_phage	6.2e-08	25.6
WP_025286825.1\|1587186_1587531_+	transcriptional regulator	NA	NA	NA	NA
WP_025286826.1\|1588060_1588813_+	phage antirepressor KilAC domain-containing protein	K4IBS6	Acinetobacter_phage	9.6e-30	40.8

DBSCAN-SWA_4

1718544 : 1789588

Bacillus_phage(20.0%)

tail,plate,tRNA,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286929.1\|1718544_1720122_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.0e-20	28.9
WP_025286930.1\|1720478_1721618_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_072632663.1\|1721641_1723180_-	GAF domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	4.7e-15	25.6
WP_025286932.1\|1723384_1725067_-	alginate export family protein	NA	NA	NA	NA
WP_025286934.1\|1726251_1728369_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_025286935.1\|1728526_1729399_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025286936.1\|1729395_1730544_+	TDT family transporter	NA	NA	NA	NA
WP_025286937.1\|1730559_1731480_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.4e-14	32.3
WP_173656040.1\|1731480_1732707_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_025286939.1\|1732781_1733609_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_025286940.1\|1733878_1735369_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_125918916.1\|1735575_1736856_-	hypothetical protein	NA	NA	NA	NA
WP_011632205.1\|1737074_1737278_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_011632206.1\|1737291_1737651_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_025286942.1\|1737783_1738854_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.7e-25	35.6
WP_025286943.1\|1738857_1741317_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_025286944.1\|1741485_1743291_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	5.1e-21	25.2
WP_164504169.1\|1743700_1744018_-	hypothetical protein	NA	NA	NA	NA
WP_164504170.1\|1744682_1744847_+	hypothetical protein	NA	NA	NA	NA
WP_025286946.1\|1744903_1745161_+	hypothetical protein	NA	NA	NA	NA
WP_025286947.1\|1745351_1746680_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_025286948.1\|1746695_1748906_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	5.5e-25	23.7
WP_164504171.1\|1748988_1751787_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	5.2e-28	27.9
WP_025286950.1\|1752070_1753537_-	UdgX family uracil-DNA binding protein	A0A127AW33	Bacillus_phage	1.8e-11	30.6
WP_025286951.1\|1753533_1754766_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_025286952.1\|1755074_1756055_+	ADP-glyceromanno-heptose 6-epimerase	M4QHP0	Synechococcus_phage	7.1e-25	34.7
WP_025286953.1\|1756109_1758950_+	glycoside hydrolase family 99-like domain-containing protein	NA	NA	NA	NA
WP_025286954.1\|1759021_1760602_+	FkbM family methyltransferase	G9E4U7	Ostreococcus_lucimarinus_virus	6.3e-07	28.0
WP_025286955.1\|1760670_1761264_-	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_025286956.1\|1761578_1762970_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_072632664.1\|1763064_1764900_-	Hint domain-containing protein	NA	NA	NA	NA
WP_025286958.1\|1765095_1768068_-	glycosyltransferase	NA	NA	NA	NA
WP_025286959.1\|1768436_1768817_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_025286960.1\|1768858_1771999_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_025286961.1\|1772018_1773326_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_081369690.1\|1773398_1774037_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011632247.1\|1774087_1775341_-	GTP-binding protein	NA	NA	NA	NA
WP_025286963.1\|1775605_1777651_+	hypothetical protein	NA	NA	NA	NA
WP_025286964.1\|1777752_1778139_-	hypothetical protein	NA	NA	NA	NA
WP_025286965.1\|1778173_1778719_-	hypothetical protein	A0A191ZDK6	Acinetobacter_phage	5.2e-25	39.4
WP_011632251.1\|1778751_1779075_-	hypothetical protein	NA	NA	NA	NA
WP_025286966.1\|1779071_1779314_-	hypothetical protein	NA	NA	NA	NA
WP_038515565.1\|1779298_1780291_-	hypothetical protein	NA	NA	NA	NA
WP_038515566.1\|1780292_1780772_-	hypothetical protein	NA	NA	NA	NA
WP_025286969.1\|1780783_1782430_-\|tail	tail fiber domain-containing protein	A0A0C4K5Y2	Synechococcus_phage	6.3e-18	36.9
WP_025286970.1\|1782479_1783799_-	DUF2612 domain-containing protein	A0A291LB27	Pseudomonas_phage	5.6e-09	24.3
WP_025286971.1\|1784064_1784667_-	hypothetical protein	A0A291LBI1	Klebsiella_phage	5.0e-13	28.4
WP_164504172.1\|1784688_1785714_-	hypothetical protein	NA	NA	NA	NA
WP_072632667.1\|1785710_1786244_-	hypothetical protein	NA	NA	NA	NA
WP_125918919.1\|1786315_1786840_-	hypothetical protein	NA	NA	NA	NA
WP_072632668.1\|1786836_1787367_-	hypothetical protein	NA	NA	NA	NA
WP_095532116.1\|1787503_1788028_-	hypothetical protein	NA	NA	NA	NA
WP_025286974.1\|1788124_1789588_-\|plate	baseplate J/gp47 family protein	A0A291AYU1	Shigella_phage	1.6e-41	27.0

DBSCAN-SWA_5

1798299 : 1806602

Pseudomonas_phage(50.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286985.1\|1798299_1798737_-	DUF3277 family protein	A0A0A1IUI2	Pseudomonas_phage	9.9e-11	33.6
WP_025286986.1\|1798772_1799849_-	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	3.3e-68	48.5
WP_025286987.1\|1799841_1800375_-	hypothetical protein	NA	NA	NA	NA
WP_011632278.1\|1800387_1800753_-	hypothetical protein	NA	NA	NA	NA
WP_025286988.1\|1800749_1801070_-	hypothetical protein	NA	NA	NA	NA
WP_025286989.1\|1801069_1801462_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_011632281.1\|1801465_1802416_-	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	9.2e-70	46.3
WP_025286990.1\|1802440_1802890_-	DUF2190 family protein	NA	NA	NA	NA
WP_025286991.1\|1802892_1803870_-	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	1.3e-42	37.2
WP_025286992.1\|1803897_1805139_-	DUF1073 domain-containing protein	A0A0N9SI81	Pseudomonas_phage	9.3e-30	29.5
WP_081371641.1\|1805171_1806602_-\|terminase	phage terminase large subunit	J7I460	Acinetobacter_phage	6.0e-57	36.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP003181

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection