CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP003182	Granulibacter bethesdensis CGDNIH4, complete genome	6 crisprs	csa3,cas3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas1,RT,DEDDh,DinG	4	20	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003182_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_1

1561375-1562501

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CRT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGCAGGCGGGGAACAC	PILER-CR

18 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP003182_1

>merge|NZ_CP003182|1|1561375-1562501|CRT,CRISPRCasFinder,PILER-CR
TCCGGCCTTCGCTGACAGGCGGGGAACACGGCTCCTCTGGCGCTCGGTGCAGATGTGCCGCGGGTTCATCCCCGCGCAGGCGGGGAACACAGCCAAGGTACATGCCGAGCTGCGTGGCATCTCGGTTCATCCCCGCGCAGGCGGGGAACACTAGGCGTTCGGCAACGGACAGATCTATCCTGGCGGTTCATCCCCGCGCAGGCGGGGAACACAGCCAAGGTACATGCCGAGCTGCGTGGCATCTCGGTTCATCCCCGCGCAGGCGGGGAACACTAGGCGTTCGGCAACGGACAGATCTATCCTGGCGGTTCATCCCCGCGCAGGCGGGGAACACAAGGCAGCCCCGTCCACGATAGCGACAATCCGCGGTTCATCCCCGCGCAGGCGGGGAACACATCCGGAGATCAGCGTCAGAGCCGAGGCCGGACGGTTCATCCCCGCGCAGGCGGGGAACACCCATGCTGGGGGTTCCAGTCCTGATCTGTGCCCGGTTCATCCCCGCGCAGGCGGGGAACACCAGCCTACACCAGTATGTTCCGTTCAGAAGTTCGGTTCATCCCCGCGCAGGCGGGGAACACCCTCTCTTCGATCCTCGCAAGCCTGTCCACAACGGTTCATCCCCGCGCAGGCGGGGAACACTCCGAACAGGCTCAGCATGACGCGTATGCGGTCGGTTCATCCCCGCGCAGGCGGGGAACACGGTCTGGTCGTGCCGTCACAGAATTACCCGGGCGGTTCATCCCCGCGCAGGCGGGGAACACCCCCAGCTTGTGCATCAGCGCATCGTTAAAATCGGTTCATCCCCGCGCAGGCGGGGAACACAGATCGACGCCAGTGGCGTGAACGCGAATCGCCGGTTCATCCCCGCGCAGGCGGGGAACACAGCATCTCTCGTGCTGGGGGGAGCCGCCCCCGCGGTTCATCCCCGCGCAGGCGGGGAACACCCCACGCGCGCGGGGGAGCGATCTGATAAAGTCGGTTCATCCCCGCGCAGGCGGGGAACACCGTGCAGGTATTGTCGGGTGTGATGCCAATCACGGTTCATCCCCGCGCAGGCGGGGAACACGTTCGAAGCAACATAAGGGGATCGAAGCCTCTCGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003182|1|1|1561375-1562501|CRT
TCCGGCCTTCGCTGACAGGCGGGGAACAC	GGCTCCTCTGGCGCTCGGTGCAGATGTGCCGC
GGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCCAAGGTACATGCCGAGCTGCGTGGCATCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAGGCGTTCGGCAACGGACAGATCTATCCTGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCCAAGGTACATGCCGAGCTGCGTGGCATCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAGGCGTTCGGCAACGGACAGATCTATCCTGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AAGGCAGCCCCGTCCACGATAGCGACAATCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATCCGGAGATCAGCGTCAGAGCCGAGGCCGGA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCATGCTGGGGGTTCCAGTCCTGATCTGTGCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CAGCCTACACCAGTATGTTCCGTTCAGAAGTT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCTCTCTTCGATCCTCGCAAGCCTGTCCACAA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCCGAACAGGCTCAGCATGACGCGTATGCGGT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGTCTGGTCGTGCCGTCACAGAATTACCCGGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCCCAGCTTGTGCATCAGCGCATCGTTAAAAT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGATCGACGCCAGTGGCGTGAACGCGAATCGC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCATCTCTCGTGCTGGGGGGAGCCGCCCCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCCACGCGCGCGGGGGAGCGATCTGATAAAGT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CGTGCAGGTATTGTCGGGTGTGATGCCAATCA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GTTCGAAGCAACATAAGGGGATCGAAGCCTCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003182|1|1|1561436-1562501|CRISPRCasFinder
GGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCCAAGGTACATGCCGAGCTGCGTGGCATCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAGGCGTTCGGCAACGGACAGATCTATCCTGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCCAAGGTACATGCCGAGCTGCGTGGCATCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TAGGCGTTCGGCAACGGACAGATCTATCCTGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AAGGCAGCCCCGTCCACGATAGCGACAATCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	ATCCGGAGATCAGCGTCAGAGCCGAGGCCGGA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCATGCTGGGGGTTCCAGTCCTGATCTGTGCC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CAGCCTACACCAGTATGTTCCGTTCAGAAGTT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCTCTCTTCGATCCTCGCAAGCCTGTCCACAA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	TCCGAACAGGCTCAGCATGACGCGTATGCGGT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GGTCTGGTCGTGCCGTCACAGAATTACCCGGG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCCCAGCTTGTGCATCAGCGCATCGTTAAAAT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGATCGACGCCAGTGGCGTGAACGCGAATCGC
CGGTTCATCCCCGCGCAGGCGGGGAACAC	AGCATCTCTCGTGCTGGGGGGAGCCGCCCCCG
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CCCACGCGCGCGGGGGAGCGATCTGATAAAGT
CGGTTCATCCCCGCGCAGGCGGGGAACAC	CGTGCAGGTATTGTCGGGTGTGATGCCAATCA
CGGTTCATCCCCGCGCAGGCGGGGAACAC	GTTCGAAGCAACATAAGGGGATCGAAGCCTCT
CGGTTCATCCCCGCGCAGGCGGGGAACAC

>NZ_CP003182|1|1|1561437-1562501|PILER-CR
GGTTCATCCCCGCGCAGGCGGGGAACACA	GCCAAGGTACATGCCGAGCTGCGTGGCATCTC
GGTTCATCCCCGCGCAGGCGGGGAACACT	AGGCGTTCGGCAACGGACAGATCTATCCTGGC
GGTTCATCCCCGCGCAGGCGGGGAACACA	GCCAAGGTACATGCCGAGCTGCGTGGCATCTC
GGTTCATCCCCGCGCAGGCGGGGAACACT	AGGCGTTCGGCAACGGACAGATCTATCCTGGC
GGTTCATCCCCGCGCAGGCGGGGAACACA	AGGCAGCCCCGTCCACGATAGCGACAATCCGC
GGTTCATCCCCGCGCAGGCGGGGAACACA	TCCGGAGATCAGCGTCAGAGCCGAGGCCGGAC
GGTTCATCCCCGCGCAGGCGGGGAACACC	CATGCTGGGGGTTCCAGTCCTGATCTGTGCCC
GGTTCATCCCCGCGCAGGCGGGGAACACC	AGCCTACACCAGTATGTTCCGTTCAGAAGTTC
GGTTCATCCCCGCGCAGGCGGGGAACACC	CTCTCTTCGATCCTCGCAAGCCTGTCCACAAC
GGTTCATCCCCGCGCAGGCGGGGAACACT	CCGAACAGGCTCAGCATGACGCGTATGCGGTC
GGTTCATCCCCGCGCAGGCGGGGAACACG	GTCTGGTCGTGCCGTCACAGAATTACCCGGGC
GGTTCATCCCCGCGCAGGCGGGGAACACC	CCCAGCTTGTGCATCAGCGCATCGTTAAAATC
GGTTCATCCCCGCGCAGGCGGGGAACACA	GATCGACGCCAGTGGCGTGAACGCGAATCGCC
GGTTCATCCCCGCGCAGGCGGGGAACACA	GCATCTCTCGTGCTGGGGGGAGCCGCCCCCGC
GGTTCATCCCCGCGCAGGCGGGGAACACC	CCACGCGCGCGGGGGAGCGATCTGATAAAGTC
GGTTCATCCCCGCGCAGGCGGGGAACACC	GTGCAGGTATTGTCGGGTGTGATGCCAATCAC
GGTTCATCCCCGCGCAGGCGGGGAACACG	TTCGAAGCAACATAAGGGGATCGAAGCCTCTC
GGTTCATCCCCGCGCAGGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_011632077.1\|1562572_1562860_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP003182.2\|WP_025286768.1\|1550080_1550395_+\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|184348
NZ_CP003182.2\|WP_025320487.1\|1565149_1566214_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003182.2\|WP_051498433.1\|1556455_1557379_+\|P-type-conjugative-transfer-protein-TrbG	unknown	unknown	gnl\|CDD\|237543
NZ_CP003182.2\|WP_038511427.1\|1572243_1573299_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP003182.2\|WP_081366661.1\|1557365_1557848_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184367
NZ_CP003182.2\|WP_025320495.1\|1555658_1556351_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|319762
NZ_CP003182.2\|WP_025320489.1\|1563790_1564474_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003182.2\|WP_025320491.1\|1559356_1559947_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP003182.2\|WP_011632087.1\|1573635_1574124_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|274523
NZ_CP003182.2\|WP_072490552.1\|1552888_1553650_+\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NZ_CP003182.2\|WP_051498434.1\|1553652_1555392_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_CP003182.2\|WP_025320488.1\|1564475_1565150_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP003182.2\|WP_025320486.1\|1566213_1566717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003182.2\|WP_155760880.1\|1559979_1560672_-\|S26-family-signal-peptidase	unknown	unknown	gnl\|CDD\|371097
NZ_CP003182.2\|WP_025320485.1\|1566713_1568171_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP003182.2\|WP_038511441.1\|1550409_1552908_+\|transporter	unknown	unknown	gnl\|CDD\|184375
NZ_CP003182.2\|WP_081366662.1\|1571780_1572224_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|235875
NZ_CP003182.2\|WP_025320484.1\|1568538_1571037_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003182.2\|WP_081366737.1\|1558027_1559215_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_011632077.1\|1562572_1562860_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.21924e-58
NZ_CP003182.2\|WP_025286768.1\|1550080_1550395_+\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|184348	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.	7.21181e-39
NZ_CP003182.2\|WP_025320487.1\|1565149_1566214_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.05673e-111
NZ_CP003182.2\|WP_051498433.1\|1556455_1557379_+\|P-type-conjugative-transfer-protein-TrbG	gnl\|CDD\|237543	PRK13885, PRK13885, conjugal transfer protein TrbG; Provisional.	1.79038e-88
NZ_CP003182.2\|WP_038511427.1\|1572243_1573299_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP003182.2\|WP_081366661.1\|1557365_1557848_+\|hypothetical-protein	gnl\|CDD\|184367	PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.	4.32867e-06
NZ_CP003182.2\|WP_025320495.1\|1555658_1556351_+\|conjugal-transfer-protein	gnl\|CDD\|319762	cd16425, TrbF, conjugal transfer protein TrbF. This family includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer. This domain is similar to the type IV secretion system (T4ASS) component VirB8 and possibly has a similar fold to the nuclear transport factor-2 (NTF-2)-like superfamily.	6.26902e-52
NZ_CP003182.2\|WP_025320489.1\|1563790_1564474_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	7.89417e-56
NZ_CP003182.2\|WP_025320491.1\|1559356_1559947_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.2477e-75
NZ_CP003182.2\|WP_011632087.1\|1573635_1574124_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	2.42443e-52
NZ_CP003182.2\|WP_072490552.1\|1552888_1553650_+\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	4.07283e-41
NZ_CP003182.2\|WP_051498434.1\|1553652_1555392_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	1.05597e-64
NZ_CP003182.2\|WP_025320488.1\|1564475_1565150_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.67572e-39
NZ_CP003182.2\|WP_025320486.1\|1566213_1566717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.88491e-18
NZ_CP003182.2\|WP_155760880.1\|1559979_1560672_-\|S26-family-signal-peptidase	gnl\|CDD\|371097	pfam10502, Peptidase_S26, Signal peptidase, peptidase S26. This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesized secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base.	1.68135e-30
NZ_CP003182.2\|WP_025320485.1\|1566713_1568171_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.52056e-108
NZ_CP003182.2\|WP_038511441.1\|1550409_1552908_+\|transporter	gnl\|CDD\|184375	PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.	0
NZ_CP003182.2\|WP_081366662.1\|1571780_1572224_-\|cytidine-deaminase	gnl\|CDD\|235875	PRK06848, PRK06848, cytidine deaminase.	5.06475e-73
NZ_CP003182.2\|WP_025320484.1\|1568538_1571037_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.25114e-119
NZ_CP003182.2\|WP_081366737.1\|1558027_1559215_+\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.7467e-82

>NZ_CP003182.2|WP_155760880.1|1559979_1560672_-|S26-family-signal-peptidase
MHFLCLVSHCSTAHRSGACHANVDQADRGGLRRSNDRGRLCYPMNAHRFAGGAWIVTTAIALIVGGSYSAGLRINMTASAPRGLWLISRIEAGSVRPGEMVSVCPPAQRVVIAMLRHGFIGPGNCLGTDSEPFLKPVAAVAGNTVIIRPAGLIEVNGMLLPNSAPLANMPAWPAGTYTVKPGQVWLISSYDPGSFDSRYFGPVPTANILGQAIPILIDGDAKRMALRPLL
>NZ_CP003182.2|WP_025320491.1|1559356_1559947_-|lytic-transglycosylase-domain-containing-protein
MFVDPALIQTCAPTVAPSTVQSIIQVESKGNPLAINVNGTKLARQPRDIVDATALATAYIKAGYSVDLGLMQVNNKNLSKLGYTISDMFIPCKNLSAGAQILTKFYTSGREQMIDPQIALRAALSAYNTGNFISGFRNGYVARYFAGSLLTKFGQFTAENKAQEKDDSSSYGQQIMNPYTANTVVYVRHEETILQK
>NZ_CP003182.2|WP_081366737.1|1558027_1559215_+|TrbI/VirB10-family-protein
MNYVAKAPIESGTVVAKATPPVHPSDAVPPTPPSQLQPIVPKIAPIQTQTMSEEYKARLELIQHITSRRVDTELEALSAASDVQGFTKTATQKAVNESTPMPRPLVGLPNADAMLATQAGNMGSQTDGFMPIVPPINYSGGISGSGIGGFGGLANNLGGFGILPGLGSGQNNDQNQQREKNAFLSQKSDVNSPYLPYTRTAPLSNTEVKAGTVIPGVMISGVDSDLPGQIIAQVRQNVYDTATGRYLLIPAGARLIGSYDSRITMGQSRVLVGWKRIIYPDGSSVSLDFMPGTDQSGYAGFKDQVNNHMWKIFGNALLMSVFSAGVQLSQPQATNGQNFNSSQIVAGMLGQQLAEAGIVMANRGMNIQPTLEIRPGYEFNIMVTKDVILPPWNSN
>NZ_CP003182.2|WP_081366661.1|1557365_1557848_+|hypothetical-protein
MRGIKMKKHFLIFSILTLSALTGCAALPDSSISYVSEKITNPSDASVMAYDAADYLTTVLPPAQTILLLDPPQSLHGNILTPTFETALRARGYALMQLPRYPSPVSKQPLGTQLRYLISPLDGGVLLQLQYQGVEAARFYYRDKNGALTFNAPFTVRESH
>NZ_CP003182.2|WP_051498433.1|1556455_1557379_+|P-type-conjugative-transfer-protein-TrbG
MAQNITQPPEEPVKLTRTPATNASKPFAPLPAVPFLSSNIVPLTEKEAYGLKLADEWKNHPDRPRRGGDGSVVYLYGATMPVLICTPLEVCSIRLQPGEIVNDVHTGDIARWRINPATSGSGGSTTTFVVVKPTDSGLTTDLFITTTRRSYTIKLVSDQQRWIPILSFDYPDDIQAAWASYHQREGEAQQASAANYARNTMPETGQNLANLDFRFRLSGDNPSWIPLRVYTDGLKTYIQFPRAGFPNGAPALVALGEGGWFHSAPTKLVNYRVSGDRYVVDQVLHRAALITGVDGDQQRVIITYEGN
>NZ_CP003182.2|WP_025320495.1|1555658_1556351_+|conjugal-transfer-protein
MKRQVPDKQKTVNAPLSPYIAARREWNERYGEYIKKAKTWRLTAFFALGIALVAVGGLVSVSMQSRVVPYIVSLNGHNDVVRVERAEVLKQPDSNVIEAALANWVIGARTIYTDGQAMKNLIDTTYAMTLPQSPAYQALASYHREHNPYILSSSENISVQINLVVPVSNESWQVEWTETTKSPSGKVISTKDWKATLTISLAPPADPQQIMLNPLGVYVRQFAWSSRLPS
>NZ_CP003182.2|WP_051498434.1|1553652_1555392_+|P-type-conjugative-transfer-protein-TrbL
MHIKAAIQIIILVVLAVVDILIARQIDSGRRVSVTVNSHALVISSDKQFFSPQPKTIDTYTIIKKSVVLILFVFGTALLFSDASHAADLSNPTQSYQGLLDLIQSGANSWNARLLGYAKDLFWSLALIQLVWTFAPLVLKGADIGEIVGELLYFVMIIGFFYALLTNAVTWATDIVNSFRQAGAMAAGVGQQLEPGNMFGFAVQMAKTIGETRTVNPLIAGMVSLATVIVLLCFSFISAFMGVTLVESYIVINASVFFLGFGGSQWTRGYATAMARYAVAVGAKLFVLTLLIGIIIQSGNSWAAAYSRDQVSMWTMVGLSLVCAYLSKKIPDLVQSMISGSSIGNLSVVGARTAFTAATGGVSSIPPVAGGIGKAAEFDVNAAGRNIANAMDFSFTEHIKISGIMGSSESSSIQTASLLSPRVGGSTHISKSDTGSLAQNRSRQGDSYISRIPDGSSGISAPITIVADNMRTAAAAPDGASGGKTGIPQPFSQQTPSDSPSRPISMVFAQSALAGALGDTGLLSTLSVPGMERTHKLNLGQSPQNGGNGEGKTWARNDTFPSSKPENMLRPSPDPKEKT
>NZ_CP003182.2|WP_072490552.1|1552888_1553650_+|P-type-conjugative-transfer-protein-TrbJ
MKNLFSKLLFFRLMTFALGIVLFAGVNPAYAQWAVTCVNCSNLLSQMLQYGKEVETAAISAQQLETQIQQYQSMVRQGLSLPQSLFSQITSNLAKIQSLYNQSSAVAGNIANFENNFSAKFPDYNTYLTNNGQNPAYVQDFYKQWAQNGLDSNKAAMGVAGTNVNQIQAEDSQLASLINQSQSAAGQLQAIQAANQIAAQQVQQMQKLRELVNAQIQNEGNYYAQAIQRQAIDDAATAAFYSGTVNRSGAKGY
>NZ_CP003182.2|WP_038511441.1|1550409_1552908_+|transporter
MLALQQFRSKVAGLPDLLNYAALIDEGIILGKDGSLIAGFFFRGDDAAVATNSELNYLTAMVNTYLARFGAGWAIWIDAIRIDSPGYPEPETAHFLEPISAMIDAERRAMFEQDAAHYETEYAIIVEYLPPLLRESRFSEMVYNDSEADHSAPPGNRHLEDFQKRLLDLEDGLGDLLHMRRMKTLRSETPEGESYDSDELVNYLHFCLTGEAIALRIPDCPMYLDAWLGFPELWPGDIPKLGEKFFMCVAIEGFPGMTEPGMLGMLDGLPLAYRWSSRFIFLEQHEAVAALNRYRLKWQQKVRGFWSQVIKSQKGMINTDALGMVHESEEAINEAKSDLVAYGYYTPVIVLIHKDRAFLEEQARYIKREVERRGFSARIESVNTLEAWLGSLPGHTYPNIRRPLVHTLNLADLLPLASIWPGERECPCNFYPAGSPPLMQTVTTGATPFRLNLHVGDVGHTLVFGPTGAGKSTLLAMILAQARRYCSRPQHDGTTLPMTITAFDKGRSLYALCAATGGRHYDIGSDDSPIAVAPLTEIDSDSNMLWAEEWVAICFELQANRAPSPQQKAEIHRAMRLLAQAPRENRSLTEFVTTIQDDEIRAAVSHYTISGAMGYLLDGQSDRVDLSPFTVFEIDELMKLGDKNAIPVLLYLFRRFEQSLKGQPAILSLDEAWVMLGHPVFRERLREWLKELRKKNCLVLLATQSLSDAVGSGLLDVLLEQCPTKILLPNKEADLRGTKDNPGPADLYQTFGLNQREIELLKNGQYKRHYYYKSSLGRRLFELGLGPLALSFVAVSDKESIAEIQLLQELHGVDWPLVWLDHRSVDYEKFVQ
>NZ_CP003182.2|WP_025286768.1|1550080_1550395_+|VirB3-family-type-IV-secretion-system-protein
MRKEHTLRQTRIHRALHRPQQIWGGERELMLFSMLVAGGLIIAAMNIVVTLIGTIMWLACVYGLRMMAKADPVMSKVYMRQLRYQEYYAPFSRPWRIDRIKRRS
>NZ_CP003182.2|WP_011632077.1|1562572_1562860_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVVVVTNAPPRLRGRLAAWLVEVRAGVYVGNYSARTREMIWRQVTEGLETGDAVMVWKAPTDQGYDFLTFGRNRRMPIDFDGLKLVTFLPEKSA
>NZ_CP003182.2|WP_025320489.1|1563790_1564474_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYFSHLRLARNPSARALAVLLRPSESGGRASGERVSAQHHLLWSVFADSEERKRDFLWREERDGSFLTLSARPPLQSDLFQPHRIKSYAPDLAPGARLEFLLRANATRMKRGGKREDVVKAPIDALEQSERAERRMEIASSAGKAWLEQQGEKSGFRVITAMAEDYRQLSLPRPGATDRQAMKLGILDLSGHLEITDPALFLRDLPQGFGRAKSFGCGLMIIRRA
>NZ_CP003182.2|WP_025320488.1|1564475_1565150_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MQQPFLVFGLTASLGSMGELAGHERRGSLIWPTRSAIIGLMGAALGIERDGDFSALDVLSIDVAIFDAGAPVRDYHTIETIPSAAAKNPNSRPEALRDARGRTNTTITHRDYRTSVFYGIAVRGAGLERIVAALLEPHFTLYVGRKSCPLAAPTGAKIVEAVSAEAALEHLKAPLWRKESVKAHLLVTDDPEGEVVTDVPLDRSSWHFATRRVGLRPVNIMAGG
>NZ_CP003182.2|WP_025320487.1|1565149_1566214_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFLQFHLLTTYGPSNPNRDDQGRPKQAIVGGVPRLRMSSQSIKRALRESTFFALDLADHEGKRTKRLYQNLVEHLISNGVSEEKAHTAADQVATIFGKLEASSKESKNRIGTTLAFISPEEWRLAEELAGKIAAGEKVPAEKELKKMVLRRADGAVDIAMFGRMLAGSSDYNRDAAVQVAHAITTHMAQSEEDWFSAVDDLNTREETGAAHLSETSFGSGVYYQYVCVNCDLLISNLAGDRALAVKGIEALAAALARTTPKGKQNSFAHHPLAHYILAEAGTQAPRDLSGAFFSPVRGERLLEQSVEALEKTRREIDDAYGKVWTSEQKLHVGKGGTLDEITAFVGATVRGA
>NZ_CP003182.2|WP_025320486.1|1566213_1566717_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSREEKGPGTIAFGWWAEYLEPRGTNTAARALSARLRRADPIKALCEPAVHQLAQALCVSGGERETEKLVRLACLLAEVREDDAAPLAHRLGGKEPVLSRGRFEKLIRAEGENLTDLMRRAIVMADRRCNVGALARDLWYWNDKTRTDWCFGYFHADAPKSDLKETV
>NZ_CP003182.2|WP_025320485.1|1566713_1568171_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSLNLIDDQWIPVLCADGSRRVIAPWQMAEPDVVQPDWPRPDLNIACLELLIGLVFLADPPVDGEDWEARRDADPQRLQEKLAPYAPAFNLVGDGPRFLQDLEPFTDEASSVDMLFIDSAGVQTAGNNADVMVHRNRYDRLDFPMAAMALYTFQADAPSGGRGNRTSLRGGGPMVTLVDPERMLWDLVWVNVPCGHSAKMETLPWMRPTRVSDIGQQTLPPDGALFGAEAFFGMPRRLRLTHDEGAVTGVIQKPWGTNYALWKHPLSPYYRLKLGTEWLPKHPRAGHFGYRNWLGVVVKEKKSDLSELALCLREERIGGGSILVAGWSMDNMKPRDFILSRQRRLSAIPEEAESRIVDLIQAADAVAVALRNALTPVLAEGEAREAEREEFFRQTETKFLTHVQAIERGEDTADAWLADLRRQALGQFDAKALPGLNQREVEAIGRITEARQYLGLALAGYGKQGGEIFKALGLPLPEKGKRKAA
>NZ_CP003182.2|WP_025320484.1|1568538_1571037_-|CRISPR-associated-helicase/endonuclease-Cas3
MQWKNWPGKSSVTPDGPEHPAAFHMLDVAAVAERLIEPFGVARPLRDALVVMTALHDIGKISESFRAMLREGVAQPGFRHWELSEVLFYVEDARIAARLGGTPLVRKMLYAAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVGEGREPAARLMDVFFDLWPEASLEGLTLAEATTLSWWLAGFCAAADWVGSNLGWFPPKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVREGKLFDFVLRPMQVACSTIALPDGPTLAIVEDGTGTGKTEAALILAHRFCQAGKGRGLFSALPTMATADPMFDRASHIVGRMFDNPSVTLAHGRAGLSVSFRDLVQRSRTGGPGEITSSDWLAESNRRALLADVGIGTIDQALLSVLPVRFQTLRIYGLSSKILLVDEVHEMGEPYIAEELTALLKMHRAAGGSAILLTATLPMSLRSKLLATYDGASDNPAYPALTIAGGEAITQFPAEDYPVKGPVKVERLDTAADAVTLLTGMAAQGAACVWVRNAVDDAIEAVEALRAAGVEARLIHARFALCDRKRIEAEILARVGKNGQGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRAGRLWRHMDIRPVSVRPVAGPVLYVLSPDPSLVEDERWLHGTLGKGAWVYALADVWRSARVLFTQGQIGTPDRQRALIEAVYGADAEPVPEALLKAEQDKYGKDSADRGLAWHNIVKFTDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTGLGLIPWAEGEGEDAWALSDVSAHRKKLDALPLPDQSSPEIMKIAKDWPEWKRAQIRLCPVDEDGTICDGLHYDEECGLVFTSL
>NZ_CP003182.2|WP_081366662.1|1571780_1572224_-|cytidine-deaminase
MASGLRLDAAACPLDRADVELVEVARAVMRQHYRPLWHTVAAALRDANGRIWTGLHLGATVGRLQICAEAIALGRAKLEGAADIETVVAVRHPKQDEPDQDIAVVSPCGACREMFADFAPSTMVIVTGEQGLIKVPLALLLPLPYRR
>NZ_CP003182.2|WP_038511427.1|1572243_1573299_-|recombinase-RecA
MRTCPGMEKNKALDAALAQIERSFGKGSIMRMGARNVAEQIEVIPSGSLGLDLALGIGGMPRGRIVEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGSVNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQTRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQGRENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETTE
>NZ_CP003182.2|WP_011632087.1|1573635_1574124_+|adenosylmethionine-decarboxylase
MNALNPLGMVSENPSENQNVTEAAAQANTQVSAAETEERKDYFVERDGMKFAGTHLLVDLWGATNLDDPGMIDVTLREAAVTAGATILHSHFHHFTPNGGVSGVVVLAESHISIHTWPERNFAAVDIFMCGACDPHKSIPVLRATFQPERIDLDEQRRGRVV

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Crispr_ID: NZ_CP003182_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_2

1571434-1571705

TypeI-E

Consensus_repeat	Method
GGACTATCCCCGCGCACGCGGGGGAACC	PILER-CR
GGACTATCCCCGCGCACGCGGGGGAACC	CRISPRCasFinder
GGACTATCCCCGCGCACGCGGGGGAACC	CRT

4 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2

The CRISPR arrays of NZ_CP003182_2

>merge|NZ_CP003182|2|1571434-1571705|PILER-CR,CRISPRCasFinder,CRT
GGACTATCCCCGCGCACGCGGGGGAACCCGCACGCAGATTTTTAAGAGGGCATTAATACGGGGACTATCCCCGCGCACGCGGGGGAACCAGTCTTGTGCCAGTACCTCGGCAGGCCGGCGAGGGACTATCCCCGCGCACGCGGGGGAACCCCGTAATTATTGACTGCATCAACAAGATCAAGAGGACTATCCCCGCGCACGCGGGGGAACCGCAATCACTCGCGCGAGCCGATAGTCGAGAGAAGGACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003182|2|2|1571434-1571705|PILER-CR
GGACTATCCCCGCGCACGCGGGGGAACC	CGCACGCAGATTTTTAAGAGGGCATTAATACGG
GGACTATCCCCGCGCACGCGGGGGAACC	AGTCTTGTGCCAGTACCTCGGCAGGCCGGCGAG
GGACTATCCCCGCGCACGCGGGGGAACC	CCGTAATTATTGACTGCATCAACAAGATCAAGA
GGACTATCCCCGCGCACGCGGGGGAACC	GCAATCACTCGCGCGAGCCGATAGTCGAGAGAA
GGACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003182|2|2|1571434-1571705|CRISPRCasFinder
GGACTATCCCCGCGCACGCGGGGGAACC	CGCACGCAGATTTTTAAGAGGGCATTAATACGG
GGACTATCCCCGCGCACGCGGGGGAACC	AGTCTTGTGCCAGTACCTCGGCAGGCCGGCGAG
GGACTATCCCCGCGCACGCGGGGGAACC	CCGTAATTATTGACTGCATCAACAAGATCAAGA
GGACTATCCCCGCGCACGCGGGGGAACC	GCAATCACTCGCGCGAGCCGATAGTCGAGAGAA
GGACTATCCCCGCGCACGCGGGGGAACC

>NZ_CP003182|2|2|1571434-1571705|CRT
GGACTATCCCCGCGCACGCGGGGGAACC	CGCACGCAGATTTTTAAGAGGGCATTAATACGG
GGACTATCCCCGCGCACGCGGGGGAACC	AGTCTTGTGCCAGTACCTCGGCAGGCCGGCGAG
GGACTATCCCCGCGCACGCGGGGGAACC	CCGTAATTATTGACTGCATCAACAAGATCAAGA
GGACTATCCCCGCGCACGCGGGGGAACC	GCAATCACTCGCGCGAGCCGATAGTCGAGAGAA
GGACTATCCCCGCGCACGCGGGGGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_011632077.1\|1562572_1562860_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP003182.2\|WP_025286783.1\|1575263_1575677_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP003182.2\|WP_025320480.1\|1576032_1577103_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP003182.2\|WP_025320487.1\|1565149_1566214_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003182.2\|WP_025320482.1\|1574246_1575128_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP003182.2\|WP_155760881.1\|1577443_1578343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320489.1\|1563790_1564474_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003182.2\|WP_155760882.1\|1578773_1578989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320491.1\|1559356_1559947_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP003182.2\|WP_011632095.1\|1579030_1579561_+\|UPF0262-family-protein	unknown	unknown	gnl\|CDD\|235077
NZ_CP003182.2\|WP_072490554.1\|1577193_1577436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_038511427.1\|1572243_1573299_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP003182.2\|WP_025320486.1\|1566213_1566717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003182.2\|WP_025320488.1\|1564475_1565150_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP003182.2\|WP_025320484.1\|1568538_1571037_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003182.2\|WP_155760880.1\|1559979_1560672_-\|S26-family-signal-peptidase	unknown	unknown	gnl\|CDD\|371097
NZ_CP003182.2\|WP_025320485.1\|1566713_1568171_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP003182.2\|WP_011632087.1\|1573635_1574124_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|274523
NZ_CP003182.2\|WP_081366662.1\|1571780_1572224_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|235875
NZ_CP003182.2\|WP_081366737.1\|1558027_1559215_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_011632077.1\|1562572_1562860_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.21924e-58
NZ_CP003182.2\|WP_025286783.1\|1575263_1575677_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.04655e-49
NZ_CP003182.2\|WP_025320480.1\|1576032_1577103_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.02358e-23
NZ_CP003182.2\|WP_025320487.1\|1565149_1566214_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.05673e-111
NZ_CP003182.2\|WP_025320482.1\|1574246_1575128_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	4.54422e-156
NZ_CP003182.2\|WP_025320489.1\|1563790_1564474_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	7.89417e-56
NZ_CP003182.2\|WP_025320491.1\|1559356_1559947_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.2477e-75
NZ_CP003182.2\|WP_011632095.1\|1579030_1579561_+\|UPF0262-family-protein	gnl\|CDD\|235077	PRK02853, PRK02853, hypothetical protein; Provisional.	4.24724e-81
NZ_CP003182.2\|WP_038511427.1\|1572243_1573299_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP003182.2\|WP_025320486.1\|1566213_1566717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.88491e-18
NZ_CP003182.2\|WP_025320488.1\|1564475_1565150_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.67572e-39
NZ_CP003182.2\|WP_025320484.1\|1568538_1571037_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.25114e-119
NZ_CP003182.2\|WP_155760880.1\|1559979_1560672_-\|S26-family-signal-peptidase	gnl\|CDD\|371097	pfam10502, Peptidase_S26, Signal peptidase, peptidase S26. This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesized secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base.	1.68135e-30
NZ_CP003182.2\|WP_025320485.1\|1566713_1568171_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.52056e-108
NZ_CP003182.2\|WP_011632087.1\|1573635_1574124_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	2.42443e-52
NZ_CP003182.2\|WP_081366662.1\|1571780_1572224_-\|cytidine-deaminase	gnl\|CDD\|235875	PRK06848, PRK06848, cytidine deaminase.	5.06475e-73
NZ_CP003182.2\|WP_081366737.1\|1558027_1559215_+\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.7467e-82

>NZ_CP003182.2|WP_025320484.1|1568538_1571037_-|CRISPR-associated-helicase/endonuclease-Cas3
MQWKNWPGKSSVTPDGPEHPAAFHMLDVAAVAERLIEPFGVARPLRDALVVMTALHDIGKISESFRAMLREGVAQPGFRHWELSEVLFYVEDARIAARLGGTPLVRKMLYAAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVGEGREPAARLMDVFFDLWPEASLEGLTLAEATTLSWWLAGFCAAADWVGSNLGWFPPKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVREGKLFDFVLRPMQVACSTIALPDGPTLAIVEDGTGTGKTEAALILAHRFCQAGKGRGLFSALPTMATADPMFDRASHIVGRMFDNPSVTLAHGRAGLSVSFRDLVQRSRTGGPGEITSSDWLAESNRRALLADVGIGTIDQALLSVLPVRFQTLRIYGLSSKILLVDEVHEMGEPYIAEELTALLKMHRAAGGSAILLTATLPMSLRSKLLATYDGASDNPAYPALTIAGGEAITQFPAEDYPVKGPVKVERLDTAADAVTLLTGMAAQGAACVWVRNAVDDAIEAVEALRAAGVEARLIHARFALCDRKRIEAEILARVGKNGQGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRAGRLWRHMDIRPVSVRPVAGPVLYVLSPDPSLVEDERWLHGTLGKGAWVYALADVWRSARVLFTQGQIGTPDRQRALIEAVYGADAEPVPEALLKAEQDKYGKDSADRGLAWHNIVKFTDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTGLGLIPWAEGEGEDAWALSDVSAHRKKLDALPLPDQSSPEIMKIAKDWPEWKRAQIRLCPVDEDGTICDGLHYDEECGLVFTSL
>NZ_CP003182.2|WP_025320485.1|1566713_1568171_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSLNLIDDQWIPVLCADGSRRVIAPWQMAEPDVVQPDWPRPDLNIACLELLIGLVFLADPPVDGEDWEARRDADPQRLQEKLAPYAPAFNLVGDGPRFLQDLEPFTDEASSVDMLFIDSAGVQTAGNNADVMVHRNRYDRLDFPMAAMALYTFQADAPSGGRGNRTSLRGGGPMVTLVDPERMLWDLVWVNVPCGHSAKMETLPWMRPTRVSDIGQQTLPPDGALFGAEAFFGMPRRLRLTHDEGAVTGVIQKPWGTNYALWKHPLSPYYRLKLGTEWLPKHPRAGHFGYRNWLGVVVKEKKSDLSELALCLREERIGGGSILVAGWSMDNMKPRDFILSRQRRLSAIPEEAESRIVDLIQAADAVAVALRNALTPVLAEGEAREAEREEFFRQTETKFLTHVQAIERGEDTADAWLADLRRQALGQFDAKALPGLNQREVEAIGRITEARQYLGLALAGYGKQGGEIFKALGLPLPEKGKRKAA
>NZ_CP003182.2|WP_025320486.1|1566213_1566717_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSREEKGPGTIAFGWWAEYLEPRGTNTAARALSARLRRADPIKALCEPAVHQLAQALCVSGGERETEKLVRLACLLAEVREDDAAPLAHRLGGKEPVLSRGRFEKLIRAEGENLTDLMRRAIVMADRRCNVGALARDLWYWNDKTRTDWCFGYFHADAPKSDLKETV
>NZ_CP003182.2|WP_025320487.1|1565149_1566214_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFLQFHLLTTYGPSNPNRDDQGRPKQAIVGGVPRLRMSSQSIKRALRESTFFALDLADHEGKRTKRLYQNLVEHLISNGVSEEKAHTAADQVATIFGKLEASSKESKNRIGTTLAFISPEEWRLAEELAGKIAAGEKVPAEKELKKMVLRRADGAVDIAMFGRMLAGSSDYNRDAAVQVAHAITTHMAQSEEDWFSAVDDLNTREETGAAHLSETSFGSGVYYQYVCVNCDLLISNLAGDRALAVKGIEALAAALARTTPKGKQNSFAHHPLAHYILAEAGTQAPRDLSGAFFSPVRGERLLEQSVEALEKTRREIDDAYGKVWTSEQKLHVGKGGTLDEITAFVGATVRGA
>NZ_CP003182.2|WP_025320488.1|1564475_1565150_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MQQPFLVFGLTASLGSMGELAGHERRGSLIWPTRSAIIGLMGAALGIERDGDFSALDVLSIDVAIFDAGAPVRDYHTIETIPSAAAKNPNSRPEALRDARGRTNTTITHRDYRTSVFYGIAVRGAGLERIVAALLEPHFTLYVGRKSCPLAAPTGAKIVEAVSAEAALEHLKAPLWRKESVKAHLLVTDDPEGEVVTDVPLDRSSWHFATRRVGLRPVNIMAGG
>NZ_CP003182.2|WP_025320489.1|1563790_1564474_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYFSHLRLARNPSARALAVLLRPSESGGRASGERVSAQHHLLWSVFADSEERKRDFLWREERDGSFLTLSARPPLQSDLFQPHRIKSYAPDLAPGARLEFLLRANATRMKRGGKREDVVKAPIDALEQSERAERRMEIASSAGKAWLEQQGEKSGFRVITAMAEDYRQLSLPRPGATDRQAMKLGILDLSGHLEITDPALFLRDLPQGFGRAKSFGCGLMIIRRA
>NZ_CP003182.2|WP_011632077.1|1562572_1562860_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVVVVTNAPPRLRGRLAAWLVEVRAGVYVGNYSARTREMIWRQVTEGLETGDAVMVWKAPTDQGYDFLTFGRNRRMPIDFDGLKLVTFLPEKSA
>NZ_CP003182.2|WP_155760880.1|1559979_1560672_-|S26-family-signal-peptidase
MHFLCLVSHCSTAHRSGACHANVDQADRGGLRRSNDRGRLCYPMNAHRFAGGAWIVTTAIALIVGGSYSAGLRINMTASAPRGLWLISRIEAGSVRPGEMVSVCPPAQRVVIAMLRHGFIGPGNCLGTDSEPFLKPVAAVAGNTVIIRPAGLIEVNGMLLPNSAPLANMPAWPAGTYTVKPGQVWLISSYDPGSFDSRYFGPVPTANILGQAIPILIDGDAKRMALRPLL
>NZ_CP003182.2|WP_025320491.1|1559356_1559947_-|lytic-transglycosylase-domain-containing-protein
MFVDPALIQTCAPTVAPSTVQSIIQVESKGNPLAINVNGTKLARQPRDIVDATALATAYIKAGYSVDLGLMQVNNKNLSKLGYTISDMFIPCKNLSAGAQILTKFYTSGREQMIDPQIALRAALSAYNTGNFISGFRNGYVARYFAGSLLTKFGQFTAENKAQEKDDSSSYGQQIMNPYTANTVVYVRHEETILQK
>NZ_CP003182.2|WP_081366737.1|1558027_1559215_+|TrbI/VirB10-family-protein
MNYVAKAPIESGTVVAKATPPVHPSDAVPPTPPSQLQPIVPKIAPIQTQTMSEEYKARLELIQHITSRRVDTELEALSAASDVQGFTKTATQKAVNESTPMPRPLVGLPNADAMLATQAGNMGSQTDGFMPIVPPINYSGGISGSGIGGFGGLANNLGGFGILPGLGSGQNNDQNQQREKNAFLSQKSDVNSPYLPYTRTAPLSNTEVKAGTVIPGVMISGVDSDLPGQIIAQVRQNVYDTATGRYLLIPAGARLIGSYDSRITMGQSRVLVGWKRIIYPDGSSVSLDFMPGTDQSGYAGFKDQVNNHMWKIFGNALLMSVFSAGVQLSQPQATNGQNFNSSQIVAGMLGQQLAEAGIVMANRGMNIQPTLEIRPGYEFNIMVTKDVILPPWNSN
>NZ_CP003182.2|WP_081366662.1|1571780_1572224_-|cytidine-deaminase
MASGLRLDAAACPLDRADVELVEVARAVMRQHYRPLWHTVAAALRDANGRIWTGLHLGATVGRLQICAEAIALGRAKLEGAADIETVVAVRHPKQDEPDQDIAVVSPCGACREMFADFAPSTMVIVTGEQGLIKVPLALLLPLPYRR
>NZ_CP003182.2|WP_038511427.1|1572243_1573299_-|recombinase-RecA
MRTCPGMEKNKALDAALAQIERSFGKGSIMRMGARNVAEQIEVIPSGSLGLDLALGIGGMPRGRIVEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGSVNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQTRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQGRENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETTE
>NZ_CP003182.2|WP_011632087.1|1573635_1574124_+|adenosylmethionine-decarboxylase
MNALNPLGMVSENPSENQNVTEAAAQANTQVSAAETEERKDYFVERDGMKFAGTHLLVDLWGATNLDDPGMIDVTLREAAVTAGATILHSHFHHFTPNGGVSGVVVLAESHISIHTWPERNFAAVDIFMCGACDPHKSIPVLRATFQPERIDLDEQRRGRVV
>NZ_CP003182.2|WP_025320482.1|1574246_1575128_+|polyamine-aminopropyltransferase
MSDQTTSSTGTWIAETLYSDWGQQFRVGKELARVKSDFQDIVVFESNSHGRVLLLDGVVQITEADEFVYQEMLTHVPLIAHGAAKNVLIIGAGDGGVLRRVLEHKTVERAVMVEIDGEVIRLSREFMPGISGNAWNDPRAEVIVGDGIDYVKKAADGSFDVIIVDSTDPIGVGEVLFTDDFYQNAARILTSRGLIVNQCGVPFMQADELRETSLRRRNFFPRVGAYVAAVPTYVGGFMTLGFATKDADFTQADLETVRARAQVAGIANTRYWTPEVHVGSFYLPPYIAEQLPA
>NZ_CP003182.2|WP_025286783.1|1575263_1575677_-|RNA-polymerase-binding-protein-DksA
MVTLPPDYRPSEAEEFMNPLHVEYFRQKLLRWRADLLREADDTLASLSEGGIHEADITDRASVETDRALELRTRDRARKLISKIDQAMQRIESGTYGYCEETGEPIGLKRLEARPIATLSLEAQERHERMERVHRDD
>NZ_CP003182.2|WP_025320480.1|1576032_1577103_+|glycosyltransferase-family-4-protein
MHIFFIQPAATDPTAGGHRYNRELIEALHQKGHSVTDITLRARFAHDAKAAEEEAGQVFSTLTASSGQDSRIVIDGMSLPAFHHLPPSALRCLTPLIHHPGAAGQRGDCPGPDMNVQQAEQTVLSAVSHAVVTLEQTRDRLIKEYGVADAQISVVESGFTAYAPAPGTRNRDNSSPCEILSVGTLVKRKGYDVLLKALARLTDLSWKLTIAGNTQRDPAYVDVIREQAEQAGLSSRVRLLSCPGHGALQTLWDAADLYAQASWWDGPLSAVLQSLRRGIPLAITASQEAAMKLPLNAGALCAPGDYETLSKVLRRLIFDDSLRKSYATAAWNFGSGLPGWDMQAQAFIHALPPTGF
>NZ_CP003182.2|WP_072490554.1|1577193_1577436_-|hypothetical-protein
MKPRRTRAASVVEETQDELITPVRRAPRRSRSAEAPATQGKDTPAVKPRRGRKPSRPAEDSKKDSDLLDVLETSDPETLN
>NZ_CP003182.2|WP_155760881.1|1577443_1578343_+|hypothetical-protein
MTLRAVTRGVRVVAFVARVAGAFTVRGLRVTARVLAVFAVRAGAAARRVAAGVRAAVARGLVARVAGAFTARVAVRVVVARVDVALFATGAFFTAEVVRVVLARVVFARADVARCVTARAFLVDATVRRLAVAVLAAGLRAVARVAVVLVAVMRFVAGVRLVAAARFVVVLAVVARVAGLRVVAAVLRVVVLLVAARVALTGVARVAFFRTDAAPVLVEAAVEAALVDGFLEVALVAVFVAVFLAAVLRVAVLAAPLLGAAVTAAVLRRAVVLRRVVTAALLRRVVERTAIGWARGVPL
>NZ_CP003182.2|WP_155760882.1|1578773_1578989_-|hypothetical-protein
MKGQSIQLFAYRLAGCCYAGVATVWAMHERILSARKGLNQIFFSKDCKKANRKKKSLFAYCGTELAVSCFY
>NZ_CP003182.2|WP_011632095.1|1579030_1579561_+|UPF0262-family-protein
MSAKQDDTQPIQAASKRLLKVILEGEALTRLSPLQEMDRAQAVADLEAENVFSLERPLPGMTPVSEQGPYVLHLSIQEGRLIFDIRRQDDTFLTVLALALGPFRRLIKDYHLLVDSYVKAVQEAREARIQAIDMGRRGLHNEGAELMRHRLNGKISIDFETARRLFTLVCVLHQRI

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Crispr_ID: NZ_CP003182_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_3

1824058-1824134

Orphan

Consensus_repeat	Method
CCAGACACAACCTGCTGACCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003182_3

>merge|NZ_CP003182|3|1824058-1824134|CRISPRCasFinder
CCAGACACAACCTGCTGACCGCCAGAATTGATCTTTGTCCCGCTTGCAACACCCCCGGACACAACCTGCTGACCGCC

>NZ_CP003182|3|3|1824058-1824134|CRISPRCasFinder
CCAGACACAACCTGCTGACCGCC	AGAATTGATCTTTGTCCCGCTTGCAACACCC
CCGGACACAACCTGCTGACCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_025320326.1\|1849084_1850848_+\|Hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|372590
NZ_CP003182.2\|WP_072490623.1\|1811520_1815606_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_025318767.1\|1808764_1809007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_155760902.1\|1802019_1804266_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320333.1\|1828169_1831235_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_011632312.1\|1847437_1848805_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP003182.2\|WP_072490569.1\|1824703_1827943_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_025320339.1\|1805326_1807471_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP003182.2\|WP_025320327.1\|1846782_1847367_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP003182.2\|WP_025320329.1\|1843058_1844786_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP003182.2\|WP_025320338.1\|1807791_1808526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320335.1\|1815876_1819737_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_038512596.1\|1844804_1846259_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP003182.2\|WP_155760903.1\|1831493_1842548_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_081366673.1\|1800766_1801534_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP003182.2\|WP_025320325.1\|1850889_1851987_-\|alpha/beta-hydrolase	unknown	unknown	unknown
NZ_CP003182.2\|WP_011632315.1\|1852131_1852653_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP003182.2\|WP_081366674.1\|1809253_1811467_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_025320342.1\|1801633_1801933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320340.1\|1804561_1805176_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_025320326.1\|1849084_1850848_+\|Hint-domain-containing-protein	gnl\|CDD\|372590	pfam13403, Hint_2, Hint domain. This domain is found in inteins.	4.55336e-38
NZ_CP003182.2\|WP_072490623.1\|1811520_1815606_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	1.44862e-52
NZ_CP003182.2\|WP_025320333.1\|1828169_1831235_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	3.62191e-52
NZ_CP003182.2\|WP_011632312.1\|1847437_1848805_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP003182.2\|WP_072490569.1\|1824703_1827943_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.38593e-50
NZ_CP003182.2\|WP_025320339.1\|1805326_1807471_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP003182.2\|WP_025320327.1\|1846782_1847367_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	3.26384e-85
NZ_CP003182.2\|WP_025320329.1\|1843058_1844786_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP003182.2\|WP_038512596.1\|1844804_1846259_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP003182.2\|WP_025320335.1\|1815876_1819737_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.94863e-67
NZ_CP003182.2\|WP_155760903.1\|1831493_1842548_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	1.9769e-73
NZ_CP003182.2\|WP_081366673.1\|1800766_1801534_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	3.9786e-20
NZ_CP003182.2\|WP_011632315.1\|1852131_1852653_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.222e-92
NZ_CP003182.2\|WP_081366674.1\|1809253_1811467_-\|hypothetical-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.28362e-13
NZ_CP003182.2\|WP_025320340.1\|1804561_1805176_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.70326e-83

>NZ_CP003182.2|WP_025320335.1|1815876_1819737_-|AIDA-repeat-containing-protein
MSNVVVSSGVTSTGLIIGQAGQYDSASVQGIITDTTVNNSGLVVVSGGGTASGTVINSGGQESVGSGGYSVSTTISSGGYQYLLSSGVASRTQVASRGTQIVSSGGTAIDTQAYTSGGQYIYSGGVAQDTHLNADAGQYVSSGGVTLNTQISGGAGQAVYAGGVASNTQISSGGRQFIFSGGLDSGGQVSAGGSQNIMGGGSAFSTTLSSGGLQYVNSGAFVSGTIFSTGGQQILLSGASISGASIQVVATQTLSSGATATGTVLVSGGRQFVSSGGVASGTMVSAGGSQFIQSAGLDISGTVLGGFQIILLDGVASNTVISAGSQSVAGSAVSAQISSAGEQTVFDSGIASGTVVSSGGNQFVQAGGSAFSALLLSGGTQTVFSGATASGTVLSSGGMQLVSSGAIVSNTIFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQVISAGGVASATVVSSEGNQSVQSGGSAISVTVSYRGSQTISSGGVASATVVSSGGYQFVQSGGSATSTTIISGGSQTISSGGLDISGTLGGLQTILASGVASNTVISGGGQAVLGRAVSAQLSLGGTQFVYSGGIASGTVASSGSIQLVNSGGVANGTVVSSGAVQALSAGGVASGTVVNLGGLLLGNSGGSAVGTVVSNGGILNVEAGFSAISTTVSSGGSQTVSSGGIASGTIVSAGGVEQVISGGLAVNDVIIGQGAVSVSSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGGSNISVVTGNGSYSLNFANDGPSNRVFLAKQGANGSTVLYATGGILPAQSVSLVGTASSMTAAFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTDVSTALHNLVFQSTGSGSATTVKLVLSNEAAPLMLQLNTTLNQYLVGGSQADTIIGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMAGANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVAGTGGTVNLFGSTSGPGLLAFGASGGVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTEMFAGTGNALMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGSGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_072490623.1|1811520_1815606_-|AIDA-repeat-containing-protein
MTIGTSSGGSQGDLMNVSGTAISTTLNLLGVMEVLSGGTASGTLVNSGGTQNIENGGLASDTLVSGGGTQVVYSGGTAQDTMLAGANATQVVGFGGVAKRTTLSAGAKQILVSGAVVSDTVFGTDGIQILVSGAQTSGILIDTLAFQAVSVGTTATDTILVSSGTQVVFSGGTASGTVVSAGGRQFVSSGAIISDTVFGSGGYQILGSGVAAHDFSLQVSASQLLSSGATATGTVLANGGMQFVLDGASASATLVNSGGSQLVFSGRVTGTTISAGGALEVSGLVSSAISLSNTFGSALGTIISSGGTEIVWNGGWDGIRWDTNVSSNGNNPLSGAMILAGGSQVVNGGNAYGATISSGGTQIILAGGSDGGWRSIDEVAGLVGKTSGGGGTTILAGGSQAVSSGGTAVAALISSGGTQIVFAAGYAVSAMINSGGEQILSAGGETASTTIGAGGLQTVLSGGHDGRQVAVSTTSGSSGGWGYYYGASILSGGRQDVLGGGVAYSVNISAGGLQTVVGGGSTFQVYVSSGASQTVADGGVLNATWIMSGGTQTVLSGGVAGSDEVYGMQIVSSGGVASGSFINSGGQEAILTGGTAISATIYRSATQSISASGIASLTTILGGGTQVVMSGGIAASATISQGGTQIVSASGSASGTTVNQYGLQTVLSGGYATGTILMSAALQYISAGGIAEKTTINSSGYQVVSSGGSAIGTIVNDSGIQFVSSGGYATGVTLHSAGYQFVSSGSVVSNTTISSGGMQFIEGIAVNDLIADQGTVTVFSGGTLSGSLTFSDVGSGTLKIMDDRTSLSGVVISGFKSDDKIDLAWLLYSKNTSVKQSGGRVLIENPYASSYTLNFASSQTIQIRQDTDNSTILYVSDAQPTPTPTPTPEPAPTGYAQLMKQVSLTGTSSGGTLSTVFGFGSGYAGSFSNLGSGTVSADGSSYSVSGTASDILSALQTLVFQPASTGSAPSFVRVILKNETAPVVLKLNTALNQYLAGGAAADTIIGGSGNDTLASGSGGGVLQAVGKGDLLIGGRGSTSFNDGAGAATIFGGRGHDTIDAAAGGNLVMTGTGGSTVYLKARGNSLWSYGADNVSVSAGANTVIGAGGSNATISGGSSGVMFIGAGGVSTILGGDGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIMVNNGINGTYFGGTAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDLMIGSTNGSAVDIFAFANGQAGGSDTISGFTAGVDHLVLNGFSSAQADASYATQRVDGSGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_081366674.1|1809253_1811467_-|hypothetical-protein
MTLISISSGVSSSGLVIGQSGSLSAIQYDTAIVNGAVTSTSLNSSGVMTVASGGIADLTVINGGAQVVNWGGRVSGTVIGDAGTQTILYSGLADGTQINSGGRQYMYGLATNTVVAGDTAQQIVDSGGVASGTVLTAGGQMVIRQNSIGANAVISGTGKISLGSAGWLRGSLTFTGNGSGTLAVLDQTVDVSNTVISGFKADDAIDLASMRYVNSASVIQTSRAGVVKIVAGTSSAYLKFSSDSLAGQVLLAQNDGAGGTQIYTASGIHPFTNDIALYGYSTATQVTAQFSLNSSFGGTYANLGTGDLSADGKTYIVSGRPEDVSSALTNLAFLPTAGGTAPSSISVVLKNETAPVYVKLNTSLSQYLAGGAGKNTITGGAGADTLASGSGGGYLYASGQGDILIGGRGATFFEDGEGYTTIFGGKGHDSIVASANHNLLMTGLGGSTVNMKGQENTLWSNGSDTVVAYAGVNTVIGSGEGARFLVANGQSSPIFIGMGGSNTIIGADGASTMFGTAGSLIYTGGGSGSGLVLLGSGSKGELYGGDAGTMLAFGQSGATLTYYGGNGSRDTIQGGSGNITVEGATNGTFFAGSAGSNVIDVTRNSTVFGGGDGDILRSHGEGNVLQAGSGNTTLSGYWAPGTVMFAGTGNALMAGSVSMKAVDIFAFTNGRGGGSDTISGFQKGVDRLVFNGFSEQQVDAAYFTMRPDTAGNVHFTLSDNTRITLQGVPFLFRSDFG
>NZ_CP003182.2|WP_025318767.1|1808764_1809007_+|hypothetical-protein
MGSISHSDTRQFIVGHDIQGQWVVCDQSGAVGGIFKNRDSALSFARSETGHHPHAVFCAPDHLVMDFFSTISHTALRPQS
>NZ_CP003182.2|WP_025320338.1|1807791_1808526_+|hypothetical-protein
MHASTRRYRYHPLLLTVCGMMAAFTMARPALVRAASPPSYTPPPLPSPPPAEPPKTAQQPTDYLGLPGPILLGKKLYHLVWSAHPTAAYVKQEYIPADETITHYDSMLLIERISGPMTVEQSVNLMALQLQSRKTRDPLTRLTVVNNQETGNTMLDFLISGETREGPIVEWNAYRYAPLTKDGGVVLFGLSRRAYGQDGLAAFMSKLSDTRQEGLDLLTTTPMPQPHEPPPPPPAPAKGREKKG
>NZ_CP003182.2|WP_025320339.1|1805326_1807471_+|catalase
MAPPTRPSRPASSSASVPPPPSGGGCPFLHGLGGELHQLAGENNPVLTTQQGIPVGDDQNTLRLDARGPALLEDFHFREKMFHFDHERIPERVVHARGYGAHGFFELTESLSDITKADIFQRKGEKTPLFVRFSTVAGNKGSPDLARDVRGFAIKFYTKEGNWDLVGNNIPVFFIQDAIKFPDLIHAAKEAPDRAFPQAQTAHDNFWDFISLMPEAVHMALWIMSDRTIPRSLRFMEGFGVHTFRFVNAEGHSTYVKFHLKPKLGLQSVAWNEAVKINGADPDFHRRDLWSALNSGDFPEWEVGVQLFDDAFADAFPFDILDATKLIPEEDVPVRIIGRLVLTRPVDNFFAETEQVAFCTQNVVPGIDFTNDPLLQGRNFSYLDTQLKRLGGPNFTHIPINAPHVPVQNFQQDGHMAMRNPRGRANYEPNSWGAEGGPREDPQRGHTSFPAQESGEKRRARPEKFADHYSQARQFYLSQTPIEQRHIADAFTFELSKVETPTIRERMVGHLRLVDEALADAVAGGLGLKALPDAPKPARAPITDLPPSAALSIVANGPQRFEGRKLGLLVSEGADAALLSALIEAVGKEGAQLELIAPTVSGITDSKGVSHKAQQRVEGGPSVLYDAVAVLLSTDGAALLSQKPEARDFVSDAFAHAKFIAFTKEAEPLLEAAGIKPALQDNGFVRLEKADDAARFLKTCGALRFWEREAKKPA
>NZ_CP003182.2|WP_025320340.1|1804561_1805176_+|NAD(P)-dependent-oxidoreductase
MPSIALLGATGNAGSHILKELSDRGHRVTAIARNVSAVPTLPGVTAVTGDAADTATIVPILRGHDAVISALPFPTIDPALLLRAVREAGVKRYLVVGGAGSLEAEPGVKLIDHPDFPAEYKFEASHGVAFLDLLRSSASDLEWSFISPSILFGPGGRTGVFRLGGDQVLRHEGGSSISYEDYAIALVDELEHPAHIRQRFTVGY
>NZ_CP003182.2|WP_155760902.1|1802019_1804266_-|hypothetical-protein
MWFFNKNSVRLISFLFFISSLFIVIASGEVSRPLLKGDLSNNAVFKPDDFVIYKPSSETVYIQKKAFDNIIGKENMVPVYGPDKAVSFKIKAGKMESLPFLPSRWMAVPVIGKEQFDIFIYERRPYVALVCIASGKQISLLNALSDSWVLSIVHVPDGWCNGEAKIIAQSNSDKLTVGFGTPLEISPLFALAEGPVGVLAGMIIALTGFLLITLPFILYPGVNVMARLAAMTIYQALAGYLIFVAAWFLHSYILLTFMGCLFFVAPSAAFLFLLKRNGCQPDEQAGRLFGLGIAVLLAILMIPRFLLQIGGGIWFPSVALFPASWSTDNLLSIMTAKSFILRGAMHPEFLSLWSMADRGIVQPGQMLSLMALPGIGPAIVDNMPGFNALQIFGGLIQGMIIPFLIFFLHDILTVRLKAVWLAVLLASTPFLMFNSFYIWPKLSGGLLFLIAALAFENALKTKRVFPLCVALLAFVLSAMNHSANFFAGLVFPLYLVFTLIIRHHQFGTVIKLAHKAALPFLGTAAICFAMIYLVGIIEPKSSWPALFLLTGHGTFGLNHVQMISSIHDFLSKLTFAEFLSIKIDGFSSLFWMSNPIYHRAHAGYSILDLWRSEQMFSLFLSFGPGLLLLLIAGIASKFWQPGQSLVVKNSVLEEKSVEAIKITKIFGAASAVNLILFVLAFQMPMGVHHLPYGILLELIMWIFAISARLNGALVVAAFLQVMNLLYVWYYGSYMVWTYELPRLFPHGG
>NZ_CP003182.2|WP_025320342.1|1801633_1801933_+|hypothetical-protein
MPSYPTSVEAEFHWFDHQGDPQITPLEIHGRLDPGAWPDENGQSCAPIFVATHITDVHTGQPLPMTGPLARFADTLTEDWSDPRMDRMLRPFERMAMKQ
>NZ_CP003182.2|WP_081366673.1|1800766_1801534_+|helix-turn-helix-transcriptional-regulator
MSHPSDARSPLSFPIEMTVGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRSRALPRLAQCLGVDLLTLDPDYLGDYQPAAEAEKSPQPARTLQGQVRIPAQPIPPPITGLSVRSVPVFGTAQGGALGATGLPDSAQALDWARLPGPLTGIPGLFALYVEGDSMEPWVEHGHLIYIHPTRPAAPRDHVVVVVQDGEYDEPRALVKRLVRRTAGRLVLHQYNPAGEIEIDARTVMRIYRVIPWNEVAGV
>NZ_CP003182.2|WP_072490569.1|1824703_1827943_-|AIDA-repeat-containing-protein
MADIVVSAGVTSSGITLNGSVGSATVDVLGTTINTQLTGVSSETVNSGGLAISTIIGNSAIQRVNTGGVASSTVVSSGGTNNVLFGGVAISTTVSAGGSEIVAPSAVASDTVVSSGGQQTVFDSGIASGTIVRSGGTQAISAGGVASATVISSAGEQTVFDSGIASGAVVSNGGNQSVQSGGSAFAALLLSGGTQTVFSGATASGTILSSGGVQLVSSGAIISNTIFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQIISAGGIASTTVINSGGLQTVSSGGAASGTVVSLGGNMVLLSGGVMQSAVLSGGNLTVSSGASVSGVDIENQASDLIISSGGSALDTLLNNGRTIVQAGASVSGTRITTNGDLYLSGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGTVISTVVSSGSQFVDAGGVASGTVLQGTLQTLGGVAYNAQVTGSGALQSIQSGGVASGTIVTSGGGQLILAGGVAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGSNNISVVTGNGSYSLNFANDGPGNRVFLAKQGTNGSTVLYATGGILPAQSVSLVGTASSVTADFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTEVSTALHNLVFQPTGGGSATTVKLVLSNEAAPLMLQLNTTLNQYLVGGSQADTIMGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMAGANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVAGTGGTVNLFGSTSGPGLLAFGASGAVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTAMFAGTGNALMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGAGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_025320333.1|1828169_1831235_-|AIDA-repeat-containing-protein
MSVIDIASGITSTGLVLGIPGGQYDSATVEGTVISSIVKSAGLIVVSSGGNASGTVISTGGALTISNGGTATATVIRTGGTETVYAGGTDSGATVSNGGTQIISSGGTVSDTALKSGGVQTVYAAGSAVNVTVSRGATQFVSSGGETSSTEIASGGIQTIYDGGLDDGVAVDSGAIQNISSGGMAVSGTVSGIQNIFSGGNTSNMGLISGSIQNISSGGSASNILVAGTQNVYAGGSSMSASVNGIQNVYSGGIVSNVLITYGGSQNIYDGAVLVGAAVNYNANQNVLSGGSALSAIISGGTQTILSAGSVTSATIFSGGTQFVSSGGNANLTQVSANGLQTVLSGGTVVSTTVADGGTQFVSGGGIASLTVISSGALQAVLSGGSVVSTMLAASGIQTLSSGGTATGTIVSSDATQIISAGGVASGTTISTGGIQTVAGVAVDDVIAGNGSAVILRGGSLSGSLTFSSAGSGTLLITDFRSVISGAVISGFQSDDQIDLDWLQYSNNTTVTQSGNTVTVANSYGHYALTFDNAAAILAKADADGSTLLYVADYSQLPKQVSVSGASASGTMTASFGFNAAYTGTYSNLGSGTVSADGSTYTITGTTQDVFSSFQNLVFQPSSSSSTPSFVQVILKSETAPVVLQVNTTLNQYLAGGAAADTIIGGSSGADTLVSGSGGGVLQAVGKGDLLIGGRGSTLFNDGAGAATIFGGRGHDTINAAAGSNLIVTGTGGSTVDLGSQGNALWSYGADSVAVFAGANTVIGAGGSNATISGGSSGVMFIGAGGASTILGGNGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGTNGTYFGGSAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDLMIGSASGVAVDIFAFANGQGGGSDTISGFTAGVDHLVLNGFSGAQADASYATQSVDGSGNMHFTLTDNTQITLTGVTALSRSQFG
>NZ_CP003182.2|WP_155760903.1|1831493_1842548_-|AIDA-repeat-containing-protein
MADITVAAGVTSTGLNVNGDPGSATVDVLGTISNTQAHGQNGIVDIIISSGGSAVSTTITPGPNFTRQLIISGGTATGTVLSAGVEVVYGGIARGTTVGSGGKQSILSGSAISAIVSSGGQQIVSSGGSAGVTVVSSGGQQIVSSGGIAGVTVVSSGGSAVVLSRGVLSAATVTNGGSAIVSSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGIASGTVVSAGGQQIVSSGGIAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAIVSSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGIASGTVVSAGGQQIVSSGGIAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAVVSSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGVASGTVVSYGGSAVVYASGVASGTVVSNFGQQLVSSGGVASGTTLSSGGLQYVSSGGSAISAVVSNGGEQDVMSGGVASGTVVSNGGTEYVYSSGVASGTVVSNGGQQLVSSGGVASGTVVSDGGSAFVYASGVASGTVISNSGQQFVSSGGSAISAVVSSGGQQLVSSGGVASGTVVSSGGSAVVYFSGVASNTVVSNSGHQLVSSGGSAISAIVSSGGQQLVSSGGSAISAIVSSGGQQLVSSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGVASGTVVSAGGQQIVSSGGSAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAIVSSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGVASGTVVSAGGQQIVSSGGSAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAVVLSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGVASGTVVSAGGSAVIYASGSAISAIVSSGGQQIVSSGGSAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAVVLSGGVASVTVLSSGGQQIVSTGGIASATTISSGGYEYVSSGGIASGTVVSAGGSAVIYASGSAISAIVSSGGQQIVSSGGIAGVTVVSSGGSAVVLSSGVLSAATVTNGGSAVVSSGGLASGTTVSGGMEVVSSGGIASGTVVSAGGQQIVSTGGILSATTVGNGGSAVILSGGVASGTVVSPDGVEFVSTGGIASGTTLSNRGEQNVSSGGIASGTVVSSGGRQNVLSGGIASGTVVSSGGVQDIASSGVASGTTVSGSGAAQKIFSGGSATNATLVSGGTQFVSGAGIVSGTVFSSGGSQVLLSGASTTGTSIQVSASQTVSSGATATGTLLASGGTQFVSSGGIASVTVVSNGGLAVVLSGGIASGTTVSNVGLAVVSSGGIAVGTTVSQDGTEYVSSGGVASGTTVSSGGQQIVSTGGVASVTTVSGSGAAQTVLSGGSATNATLLSGGTQFVSGGGIISGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATATGTVLASGGTQLVSSGGVANGTVVSSDGQQIVSTGGVASVTTVSGSGAAQTVLSGGSATNATLVSGGTQFVSGGGIISGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATATGTLLASGGTQLVSSGGIASGTTVSAGGFEFVFSGGVVSGTTLSAGGDEFVLSSGVASGTVVSQGGVQNIWSGGVASGTVLSGGFEFVSSGGIASNTTVYNRGSAVVSSGGIARFTTVSQGGQHIVLSGGITSGTVVSQGGGEYISSGGITSDTVLSRGGAEIVLSGGVASGTVVSSGGQQYVMSGGSATNATLLSGGTQLVSSGGVASGTVVSSGGQQTVSTGGVASVTTVSGFGAAQTVLSGGSATNATLVSGGTQFVSGGGIISGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATATGTVLASGGTQLVSSGGIASGTVVSAGGSAVVLSSGVLSAATVTNGGSAVVSSGGIASVTVLNSGGQQIVSTGGIASATTISSGGYEYVSSGGIASGTVVSAGGSAVVYASGVASGTVVSSGGVEVVSSGGAASGTTLSAGGTQLVSSGGSAISTVVSYNGTQFVSSGGTAISTTINYSGTEYVASGGIVNGTTVSAGGQEYVASGGIASGTTVSAGGQQHVESAGVASGTVVSSGGKQNILSGGSATNATLLSGGTQFVSGGGIVSGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATATGTVLASSGTQLVSSGGTAISTVVSSGGVQTVLSGGSATSATLLSDGTQFVSGGGIVSGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATATGTVLASSGTQFVSSGGTAISTVVSSGGVQTVLSGGSATSATLSSGGTQFVSSGGTAISTVVSSGGTQLVSSGGVASGTTLLSDGTQFVSGGGIVSGTVFSAGGSQVLLSGASTTGTSIQVAASQTVSSGATASGTVLASGGTQLVSSGAAASGTLLSSGGWQYAVSGGVASGTVVSSGGQQAVVSGGVASSTVVSSGGHQNILSGGSATNATLLSGATQFVFEGGIVSGTVFSDGGSQVLLTGASTTGTSIQASASQTVSSGATATGTILASGGRQFVSSGGSATGTVLSAGGVEVVAGIASGTVVSDGGIELVSSGGVASGTVVGDGGIEFVSSGGVASGTKVSSGGVQYVVSGGVASGTTVSSGGVQDVVSGGVASGTMVSSGGVQVVESSGVASGTVVSSGGKQNVLSGGSATNVTLVSGGTQFVSAGGIVSGTVFSAGGQQVLLSGASTTGTSIQVAASQTVSFGATATGTILTSDGTQLVSSGGTAIGTVISAGGIEGVAGIASGTVVNDGGAEAVASGGVASGTTVNSGGWQFVASGGVASGTLVSSGGVQTVSSGGVASGTTVGGFGAVQNVLSGGSVTNVMLISGGTQFVSGGGIAISTVVSSGGMQTVSSGGAASGTVVSLGGNMVLLSGGVVQSAVLSGGNLTVSSGASVSGVDIENQASDLIISSGGSALGTLLNNGRTVVQAGASVSGTRMTTNGDLYLNGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGIAIGTFVSSGRQFVDRGGVASGTVLQGTLQALGGVAYNAHVTGSGALQSIQSGGVASGTIVTSGGGQLIQAGGIAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLVIGYNGAVVSGAVISGFQSDDQIDLKGLGYDTQTYVTQGSNNISVVTGNGSYSLNFANDGPSNRVFLAKQGADGSAVLYATGGILPAQVVSFGGAASNMTATFGFDAGYSGSYTNLGAGEVSTDGKTYSVTGTSTDVSTALHNLVFQPSGGSSPTTVKLVLSNEAAPVVLQLNTTLNQYLAGGSKADTIIGGAGHDTLASGSGGGVLQAVGSGDLLIGGKGSTTFYDGAGSTTIFGGRGHDTIHATAGHDLILTGQGGSTVTLSGQGNSLWSYGADNIAVFAGANTVIGAGGSNATISGGSSGVMFIGAGGASTILGGDGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGINGTYFGGTAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAAGGNTTLNGGGADGTVMFAGTGNDLMIGSANGSAVDIFAFANGQAGGSDTISGFTAGVDRLVLNGFSGAQADASYATQSVDGSGNMHFTLADNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_025320329.1|1843058_1844786_-|choline-dehydrogenase
MSNLQEYDYIVIGAGSAGNVLATRLTEDAGTRVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAFETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAERDGLEEWSYAHCLPYFRKAETRDIGPNDYHGGDGPVSVTTSKLGRPGGGANPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTKHGRRASTARGYLDQARKRKNLTILTHALTDRILFAGKRAIGVAFLHGGESKIAYARQEVLLCGGAIASPAILQRSGVGPASVLKALDIAPVQIMEGVGSNLQDHLEMYMQYECLEPVSLYPALLWWNQPKIGAEWMFLGKGLGASNHFEAGGFIRSHDDFAWPNIQYHFLPVAISYNGTNAVQMHGFQAHVGSMRSPSRGRVQIVSRDPEVYPSILFNYMSHEQDWREFRAAIRITREIMAQPALDQYRGRELSPGVELTSDADLDAFVRSHAETAYHPSCSCKMGTDDAAVVDAEGRVHGLEGLRVVDASIMPLITTGNLNAPTIMMAEKIADRIRGRAPLPPSDAPYYRADGAPVRGTGMRRAFGHDVNVS
>NZ_CP003182.2|WP_038512596.1|1844804_1846259_-|betaine-aldehyde-dehydrogenase
MTLGLYIHGQVEAGTGEVFSSVNPADGSVLAHIAAAREADIARAVASAQEGQRIWAAMTGIERGRILRRAVDILRARNDVLALLETKDTGKPFSETSTVDIVTGADVLEYYAGLAQAIEGEQIPLNATQFAYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTVIELAKIYTEAGLPDGVFNVVQGRGDVGAMLTAHPVIEKISFTGGVETGKKVMALAGSSSLKEVTMELGGKSPLLVFEDADLDRAADIAVMANFYSSGQVCTNGTRVFVQESVLAAFREKLLARVAKIRPGHPEDPATVFGPLASFPHRDKVLSCIARGVAEGATLLAGGGAPQEAEFSRGAYVLPTVFGDCRDDMAIVREEIFGPVLSLLSFRDEEEVITRANATEYGLAAGVVTESLSRAHRVIHRLEAGICWINTWGGSPAEMPVGGYKQSGVGRENGLVTLGHYTRIKSVLVELGGFQSVF
>NZ_CP003182.2|WP_025320327.1|1846782_1847367_-|transcriptional-regulator-BetI
MPKVGMQPIRRAQLIRATLQSIDEVGLSDTTVARIARIAGVSTGIIAHYFQDKEALLEAAMRQILADLFAAMRARRKAAVDDTPRTLLRAIVEGNFDGTQTSTAAAKAWLAFWSSSMHQPHLRRLQQINAWYLHRLLRTQFLRVQTMEQAHHSALGLAALIDGLWLRATLAGKVNEENIQVAFDYIDQKLITRL
>NZ_CP003182.2|WP_011632312.1|1847437_1848805_-|signal-recognition-particle-protein
MFDTLSGKLTGVFDKLRGRGALNEADVAEALREVRLAMLDADVALPVVKDFIASVRERAAGAEVIDSVAPGQQVMKIVHDALIEQLGGAGAVPLNLNAVAPVPVLMVGLQGSGKTTTSGKLALRLAKKERRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETGRREVYDIVILDTAGRLAIDEELMEEVKAIRAETNPSETLLVVDAMTGQDAVNTARAFNEAVGVTGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGRILGLGDVAGLVEKAAETIDEAEAEEMAMKMLKGRFTLEDYAKQLKQISRMGSLSSIMGMLPGLGKFKQQIENANIDTSILKRQAAIISSMTVKERRSPDIIKASRKKRIAAGAGVQVQDVNRLLKQFDDMSQMMKQFSKLGQKGLMRNGMQALMAQRHRPQ
>NZ_CP003182.2|WP_025320326.1|1849084_1850848_+|Hint-domain-containing-protein
MAAWIGTDLSNNDWNTGDNWQGGSPPYSYQNAVFQNGANAFLSTNHNIEDLSISGTVTIASDGHTLHNDNARLTLAGGSVLVLDNVHLVTQTTIISSGQATIRLQGAQLEIEYGSYMPATLDFQNRHNADDSVSGSTVMINSEGAKANMFASITNLTTRDAIILTNAPTSGSRIYLQANGDGSYSLIEQVPEWGRQTSILCSHVTLAAGLTAGDFTSLNQNGILELVCFLGGSMISTPEGEKPVETIYPGHSILALENGQPVARKVIWSGVATAHVNQDLPDDQAGYPVRIRKDAISDQVPYKDMLITSDHCLYLDGYFIPARLLVNGRTIFYDRSFTSYQYYHIETEKHAIITADGVLTETYLDTGNRRQFSPLSTEQTSGNVTLFGGRKSNWAEDAAAKLAVTPDLVEPVFRRIEARANEFAPPARPSTTTERQLQLKTQDGQMLRQVREINGRVLFMVPAGVNAVRILSNASRPCDVTGPFLDDRRNLGVLIGEAVLYDSGMTHTLNAHLEHEGLEGWHNPPPYEASTGACSGQRWTNGNALLPLGKRQDRAIGLLSLQVLAGGPYIIATPADEDRPINITGTA
>NZ_CP003182.2|WP_025320325.1|1850889_1851987_-|alpha/beta-hydrolase
MTQPSSASSLDRSAREIFRGAHYLARFLSADAEALVPDGPVVVFFETWLPQPDMEAPVTGETFFTHRGLDVIAIKPAANDWYQQDEMTELIDAVLAETKGRRRVGYGGSMGGYAAINFAESLALDDLVAVAPQFSIDPALMPQDWRWRREAEGIAFRQDRMRLIGRLQRGTIIYDPDSEDRPHVRAILMYHDLTPLPLRFCGHHMFRALQQARVLPMLAMNLVLGRFDRAAFRRAFRQGRRKSPVFWLELARGLCTKCWLKAATAALDRARGLAPDDAFAQDVVAGEIARAGGNHQEADRLMQLWRSHENAELAEAARYRMAQWAWYDTRSAEEIEYERAARAAEHLLAASQAIPDFTWPVSHGQ
>NZ_CP003182.2|WP_011632315.1|1852131_1852653_-|translation-initiation-factor-IF-3
MPAPPNRDGPRVNEEIRVPQVRLIDQDGEMQGVMSARDALIRAYAVGLDLLEISPNAEPPVVKILDYGKFKYEQQKKKNEARKRQKVIEIKEIKVRPNIDENDYQVKMRAMRSFISEGDKVKVTLRFRGREMAHQELGARVLQRIREELDAETKVEQMPKMENRQMVMVLAPR

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Crispr_ID: NZ_CP003182_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_4

1841528-1841784

Orphan

Consensus_repeat	Method
CNCTCGCGANACCGCCAGACGAAACAANC	CRT

4 spacers

The CRISPR arrays of NZ_CP003182_4

>merge|NZ_CP003182|4|1841528-1841784|CRT
CGCCCGCGATACCGCCAGACGAAACAATCTGCTGACCGCCAGCACTGACAACCGTGCCGCTCGCGATACCGCCAGACGAAACATACTCATAGCCGCCAGAACTGATCGTCGTCGCACTCGCGATACCGCCAGTGGATACAATTTGCTGACCACCAGAGCTGAGCACCGTGACGCTCGCGACACCGCCAGACGAAACAATCGCTGAGCCGCCATTAGTGACCGTCGCAGCACTCAGGACACCGCTGGACAAAACAACC

>NZ_CP003182|4|3|1841528-1841784|CRT
CGCCCGCGATACCGCCAGACGAAACAATC	TGCTGACCGCCAGCACTGACAACCGTGC
CGCTCGCGATACCGCCAGACGAAACATAC	TCATAGCCGCCAGAACTGATCGTCGTCG
CACTCGCGATACCGCCAGTGGATACAATT	TGCTGACCACCAGAGCTGAGCACCGTGA
CGCTCGCGACACCGCCAGACGAAACAATC	GCTGAGCCGCCATTAGTGACCGTCGCAG
CACTCAGGACACCGCTGGACAAAACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_025320326.1\|1849084_1850848_+\|Hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|372590
NZ_CP003182.2\|WP_072490623.1\|1811520_1815606_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_025320333.1\|1828169_1831235_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_011632312.1\|1847437_1848805_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP003182.2\|WP_025320338.1\|1807791_1808526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_072490569.1\|1824703_1827943_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_025320339.1\|1805326_1807471_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP003182.2\|WP_025320327.1\|1846782_1847367_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP003182.2\|WP_025320329.1\|1843058_1844786_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP003182.2\|WP_025320324.1\|1852865_1854794_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP003182.2\|WP_025318767.1\|1808764_1809007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320335.1\|1815876_1819737_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_081366675.1\|1819958_1824473_-\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_072490570.1\|1856259_1858857_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP003182.2\|WP_025320325.1\|1850889_1851987_-\|alpha/beta-hydrolase	unknown	unknown	unknown
NZ_CP003182.2\|WP_051498416.1\|1855072_1856101_+\|catalase-family-peroxidase	unknown	unknown	gnl\|CDD\|163709
NZ_CP003182.2\|WP_011632315.1\|1852131_1852653_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP003182.2\|WP_081366674.1\|1809253_1811467_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380183
NZ_CP003182.2\|WP_038512596.1\|1844804_1846259_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP003182.2\|WP_025320340.1\|1804561_1805176_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_025320326.1\|1849084_1850848_+\|Hint-domain-containing-protein	gnl\|CDD\|372590	pfam13403, Hint_2, Hint domain. This domain is found in inteins.	4.55336e-38
NZ_CP003182.2\|WP_072490623.1\|1811520_1815606_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	1.44862e-52
NZ_CP003182.2\|WP_025320333.1\|1828169_1831235_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	3.62191e-52
NZ_CP003182.2\|WP_011632312.1\|1847437_1848805_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP003182.2\|WP_072490569.1\|1824703_1827943_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.38593e-50
NZ_CP003182.2\|WP_025320339.1\|1805326_1807471_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP003182.2\|WP_025320327.1\|1846782_1847367_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	3.26384e-85
NZ_CP003182.2\|WP_025320329.1\|1843058_1844786_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP003182.2\|WP_025320324.1\|1852865_1854794_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP003182.2\|WP_038512596.1\|1844804_1846259_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP003182.2\|WP_025320335.1\|1815876_1819737_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.94863e-67
NZ_CP003182.2\|WP_081366675.1\|1819958_1824473_-\|AIDA-repeat-containing-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	8.48619e-72
NZ_CP003182.2\|WP_072490570.1\|1856259_1858857_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	1.44391e-102
NZ_CP003182.2\|WP_011632315.1\|1852131_1852653_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.222e-92
NZ_CP003182.2\|WP_081366674.1\|1809253_1811467_-\|hypothetical-protein	gnl\|CDD\|380183	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I.	5.28362e-13
NZ_CP003182.2\|WP_051498416.1\|1855072_1856101_+\|catalase-family-peroxidase	gnl\|CDD\|163709	cd08153, srpA_like, Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.	1.42444e-128
NZ_CP003182.2\|WP_025320340.1\|1804561_1805176_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.70326e-83

>NZ_CP003182.2|WP_025320333.1|1828169_1831235_-|AIDA-repeat-containing-protein
MSVIDIASGITSTGLVLGIPGGQYDSATVEGTVISSIVKSAGLIVVSSGGNASGTVISTGGALTISNGGTATATVIRTGGTETVYAGGTDSGATVSNGGTQIISSGGTVSDTALKSGGVQTVYAAGSAVNVTVSRGATQFVSSGGETSSTEIASGGIQTIYDGGLDDGVAVDSGAIQNISSGGMAVSGTVSGIQNIFSGGNTSNMGLISGSIQNISSGGSASNILVAGTQNVYAGGSSMSASVNGIQNVYSGGIVSNVLITYGGSQNIYDGAVLVGAAVNYNANQNVLSGGSALSAIISGGTQTILSAGSVTSATIFSGGTQFVSSGGNANLTQVSANGLQTVLSGGTVVSTTVADGGTQFVSGGGIASLTVISSGALQAVLSGGSVVSTMLAASGIQTLSSGGTATGTIVSSDATQIISAGGVASGTTISTGGIQTVAGVAVDDVIAGNGSAVILRGGSLSGSLTFSSAGSGTLLITDFRSVISGAVISGFQSDDQIDLDWLQYSNNTTVTQSGNTVTVANSYGHYALTFDNAAAILAKADADGSTLLYVADYSQLPKQVSVSGASASGTMTASFGFNAAYTGTYSNLGSGTVSADGSTYTITGTTQDVFSSFQNLVFQPSSSSSTPSFVQVILKSETAPVVLQVNTTLNQYLAGGAAADTIIGGSSGADTLVSGSGGGVLQAVGKGDLLIGGRGSTLFNDGAGAATIFGGRGHDTINAAAGSNLIVTGTGGSTVDLGSQGNALWSYGADSVAVFAGANTVIGAGGSNATISGGSSGVMFIGAGGASTILGGNGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIVVNNGTNGTYFGGSAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDLMIGSASGVAVDIFAFANGQGGGSDTISGFTAGVDHLVLNGFSGAQADASYATQSVDGSGNMHFTLTDNTQITLTGVTALSRSQFG
>NZ_CP003182.2|WP_072490569.1|1824703_1827943_-|AIDA-repeat-containing-protein
MADIVVSAGVTSSGITLNGSVGSATVDVLGTTINTQLTGVSSETVNSGGLAISTIIGNSAIQRVNTGGVASSTVVSSGGTNNVLFGGVAISTTVSAGGSEIVAPSAVASDTVVSSGGQQTVFDSGIASGTIVRSGGTQAISAGGVASATVISSAGEQTVFDSGIASGAVVSNGGNQSVQSGGSAFAALLLSGGTQTVFSGATASGTILSSGGVQLVSSGAIISNTIFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQIISAGGIASTTVINSGGLQTVSSGGAASGTVVSLGGNMVLLSGGVMQSAVLSGGNLTVSSGASVSGVDIENQASDLIISSGGSALDTLLNNGRTIVQAGASVSGTRITTNGDLYLSGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGTVISTVVSSGSQFVDAGGVASGTVLQGTLQTLGGVAYNAQVTGSGALQSIQSGGVASGTIVTSGGGQLILAGGVAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGSNNISVVTGNGSYSLNFANDGPGNRVFLAKQGTNGSTVLYATGGILPAQSVSLVGTASSVTADFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTEVSTALHNLVFQPTGGGSATTVKLVLSNEAAPLMLQLNTTLNQYLVGGSQADTIMGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMAGANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVAGTGGTVNLFGSTSGPGLLAFGASGAVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTAMFAGTGNALMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGAGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_081366675.1|1819958_1824473_-|AIDA-repeat-containing-protein
MVDIVVSAGVTSSGITLNGSVGSATVDVLGTTINTQLTGVSTETVSSGGLAISTTIRNLANQRVAGVASNTIVSSGGTNRVLSAGVAFSTTVSAGGSEFIALNGFAGNTVVSSGGQQVVSGGVASGTKINSGGQQVVSGGLASATQISSGGQQTISSGGVSIAAQLSAGGQQFISSGGLASATQFLSGGRQYVSSGGVARAALLGSGGLQYVYGSAVSAQVGLSSFQYVSSGGVAGGTLISSGGEQDIFTGGVASAAQVSSGGFQVVYSGGLANDTQLVGAIQQVNSSGVASGVQVSAGGTQNVWAGGIASATKLVSGSQQVNSGGVAVAAQISAGGIQTVLSAGIDSGSQISSGGLQTISSGGVTIATQISSGGQQTISAGGVANAVQLSAGGQQFVSSGGLASATQFISGGRQYVSAGGVASAGLLGSGGLQYVYGSAVSAQVELGAFQYVSSGGVAGGTLISSGGEQDIFTGGVASAAQVSSGGFQVVYSGGLANDTQLVGAIQQVNSSGVASGVQVSAGGTQNVWAGGIASVTKLVSGSQQVNSGGVAVAAQISAGGIQTVLSAGIDSGAQISSGGLQTISSGGVTIATQVSAGGSQMIMMGGSAVSVTLLSGGTQTVSSGATASGTVLSSGGVQYVNSGAVISGTVFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQIISAGGIASTTVINSGGLQTVSSGGAASGTVVSLGGNMVLLSGGVMQSAVLSGGNLTVSSGASVSGVDIENQASDLIISSGGSALDTLLNNGRTIVQAGASVSGTRITTNGDLYLSGGTASGTVLIGGNELISSGGIASGTVVSGGSESVYSGGTVISTVVSSGSQFVDAGGVASGTVLQGTLQTLGGVAYNAQVTGSGALQSIQSGGVASGTIVTSGGGQLILAGGVAVNDVIAGSGTITVDSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGSNNISVVTGNGSYSLNFANDGPGNRVFLAKQGTNGSTVLYATGGILPAQSVSLVGTASSVTADFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTEVSTALHNLVFQPTGGGSATTVKLVLSNEAAPLMLQLNTTLNQYLVGGSQADTIMGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMAGANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVAGTGGTVNLFGSTSGPGLLAFGASGAVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTAMFAGTGNALMIGSTNSSVVDAFAFANGQGGGSDTISGFTAGVDRLILNGFSGAQADASYSTQSVDGAGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_025320335.1|1815876_1819737_-|AIDA-repeat-containing-protein
MSNVVVSSGVTSTGLIIGQAGQYDSASVQGIITDTTVNNSGLVVVSGGGTASGTVINSGGQESVGSGGYSVSTTISSGGYQYLLSSGVASRTQVASRGTQIVSSGGTAIDTQAYTSGGQYIYSGGVAQDTHLNADAGQYVSSGGVTLNTQISGGAGQAVYAGGVASNTQISSGGRQFIFSGGLDSGGQVSAGGSQNIMGGGSAFSTTLSSGGLQYVNSGAFVSGTIFSTGGQQILLSGASISGASIQVVATQTLSSGATATGTVLVSGGRQFVSSGGVASGTMVSAGGSQFIQSAGLDISGTVLGGFQIILLDGVASNTVISAGSQSVAGSAVSAQISSAGEQTVFDSGIASGTVVSSGGNQFVQAGGSAFSALLLSGGTQTVFSGATASGTVLSSGGMQLVSSGAIVSNTIFSAGGNQVLLSGVVVSGISVQGSGSQTLSSGAITTGIVLSGGGTQVISAGGVASATVVSSEGNQSVQSGGSAISVTVSYRGSQTISSGGVASATVVSSGGYQFVQSGGSATSTTIISGGSQTISSGGLDISGTLGGLQTILASGVASNTVISGGGQAVLGRAVSAQLSLGGTQFVYSGGIASGTVASSGSIQLVNSGGVANGTVVSSGAVQALSAGGVASGTVVNLGGLLLGNSGGSAVGTVVSNGGILNVEAGFSAISTTVSSGGSQTVSSGGIASGTIVSAGGVEQVISGGLAVNDVIIGQGAVSVSSGGVLSGSLTFSGVGSGTLTLQNGAVVSGVVISGFQSDDQVDLSSLGYDSQGYVTQGGSNISVVTGNGSYSLNFANDGPSNRVFLAKQGANGSTVLYATGGILPAQSVSLVGTASSMTAAFGFDAAYSGSYANLGAGAVSTDGKTYSVTGTSTDVSTALHNLVFQSTGSGSATTVKLVLSNEAAPLMLQLNTTLNQYLVGGSQADTIIGGTGADTLQSGSGGGVLQARGSGDLLIGGSGATLFNDGDGAATIRGGQGRDTINASAGRDTIVTGSAGSQVNLSAAGNVAWSKGADTVSVMAGANTIVGAGGATYATISNNNVTTFIQSTGASTVVGGNGGATVFGTGGTVDYTANGGSDLVVAGTGGTVNLFGSTSGPGLLAFGASGGVLDYTGHGSSDTIIGGTGSVSVSSGSNGIYVGGTAGSNMILATGDATVLGGGNGDVLSSTGSGNVLVAGTGNQTLTGAAGNGTEMFAGTGNALMIGSTNSSVVDAFAFANGQAGGSDTISGFTAGVDRLILNGFSGAQADASYATQSVDGSGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_072490623.1|1811520_1815606_-|AIDA-repeat-containing-protein
MTIGTSSGGSQGDLMNVSGTAISTTLNLLGVMEVLSGGTASGTLVNSGGTQNIENGGLASDTLVSGGGTQVVYSGGTAQDTMLAGANATQVVGFGGVAKRTTLSAGAKQILVSGAVVSDTVFGTDGIQILVSGAQTSGILIDTLAFQAVSVGTTATDTILVSSGTQVVFSGGTASGTVVSAGGRQFVSSGAIISDTVFGSGGYQILGSGVAAHDFSLQVSASQLLSSGATATGTVLANGGMQFVLDGASASATLVNSGGSQLVFSGRVTGTTISAGGALEVSGLVSSAISLSNTFGSALGTIISSGGTEIVWNGGWDGIRWDTNVSSNGNNPLSGAMILAGGSQVVNGGNAYGATISSGGTQIILAGGSDGGWRSIDEVAGLVGKTSGGGGTTILAGGSQAVSSGGTAVAALISSGGTQIVFAAGYAVSAMINSGGEQILSAGGETASTTIGAGGLQTVLSGGHDGRQVAVSTTSGSSGGWGYYYGASILSGGRQDVLGGGVAYSVNISAGGLQTVVGGGSTFQVYVSSGASQTVADGGVLNATWIMSGGTQTVLSGGVAGSDEVYGMQIVSSGGVASGSFINSGGQEAILTGGTAISATIYRSATQSISASGIASLTTILGGGTQVVMSGGIAASATISQGGTQIVSASGSASGTTVNQYGLQTVLSGGYATGTILMSAALQYISAGGIAEKTTINSSGYQVVSSGGSAIGTIVNDSGIQFVSSGGYATGVTLHSAGYQFVSSGSVVSNTTISSGGMQFIEGIAVNDLIADQGTVTVFSGGTLSGSLTFSDVGSGTLKIMDDRTSLSGVVISGFKSDDKIDLAWLLYSKNTSVKQSGGRVLIENPYASSYTLNFASSQTIQIRQDTDNSTILYVSDAQPTPTPTPTPEPAPTGYAQLMKQVSLTGTSSGGTLSTVFGFGSGYAGSFSNLGSGTVSADGSSYSVSGTASDILSALQTLVFQPASTGSAPSFVRVILKNETAPVVLKLNTALNQYLAGGAAADTIIGGSGNDTLASGSGGGVLQAVGKGDLLIGGRGSTSFNDGAGAATIFGGRGHDTIDAAAGGNLVMTGTGGSTVYLKARGNSLWSYGADNVSVSAGANTVIGAGGSNATISGGSSGVMFIGAGGVSTILGGDGASTLFGTAGNLTYAAGTGGGFIVTGAGSTANLFGSAAGGLLAFGQSGATLFYTGGGGADTIQGGNGSIMVNNGINGTYFGGTAGSNQISVAGHSLVFGGGNGDVLTATGTGNVLQAGGGNTTLNGGGADGTVMFAGTGNDLMIGSTNGSAVDIFAFANGQAGGSDTISGFTAGVDHLVLNGFSSAQADASYATQRVDGSGNMHFTLTDNTQITLVGVSALSRSQFG
>NZ_CP003182.2|WP_081366674.1|1809253_1811467_-|hypothetical-protein
MTLISISSGVSSSGLVIGQSGSLSAIQYDTAIVNGAVTSTSLNSSGVMTVASGGIADLTVINGGAQVVNWGGRVSGTVIGDAGTQTILYSGLADGTQINSGGRQYMYGLATNTVVAGDTAQQIVDSGGVASGTVLTAGGQMVIRQNSIGANAVISGTGKISLGSAGWLRGSLTFTGNGSGTLAVLDQTVDVSNTVISGFKADDAIDLASMRYVNSASVIQTSRAGVVKIVAGTSSAYLKFSSDSLAGQVLLAQNDGAGGTQIYTASGIHPFTNDIALYGYSTATQVTAQFSLNSSFGGTYANLGTGDLSADGKTYIVSGRPEDVSSALTNLAFLPTAGGTAPSSISVVLKNETAPVYVKLNTSLSQYLAGGAGKNTITGGAGADTLASGSGGGYLYASGQGDILIGGRGATFFEDGEGYTTIFGGKGHDSIVASANHNLLMTGLGGSTVNMKGQENTLWSNGSDTVVAYAGVNTVIGSGEGARFLVANGQSSPIFIGMGGSNTIIGADGASTMFGTAGSLIYTGGGSGSGLVLLGSGSKGELYGGDAGTMLAFGQSGATLTYYGGNGSRDTIQGGSGNITVEGATNGTFFAGSAGSNVIDVTRNSTVFGGGDGDILRSHGEGNVLQAGSGNTTLSGYWAPGTVMFAGTGNALMAGSVSMKAVDIFAFTNGRGGGSDTISGFQKGVDRLVFNGFSEQQVDAAYFTMRPDTAGNVHFTLSDNTRITLQGVPFLFRSDFG
>NZ_CP003182.2|WP_025318767.1|1808764_1809007_+|hypothetical-protein
MGSISHSDTRQFIVGHDIQGQWVVCDQSGAVGGIFKNRDSALSFARSETGHHPHAVFCAPDHLVMDFFSTISHTALRPQS
>NZ_CP003182.2|WP_025320338.1|1807791_1808526_+|hypothetical-protein
MHASTRRYRYHPLLLTVCGMMAAFTMARPALVRAASPPSYTPPPLPSPPPAEPPKTAQQPTDYLGLPGPILLGKKLYHLVWSAHPTAAYVKQEYIPADETITHYDSMLLIERISGPMTVEQSVNLMALQLQSRKTRDPLTRLTVVNNQETGNTMLDFLISGETREGPIVEWNAYRYAPLTKDGGVVLFGLSRRAYGQDGLAAFMSKLSDTRQEGLDLLTTTPMPQPHEPPPPPPAPAKGREKKG
>NZ_CP003182.2|WP_025320339.1|1805326_1807471_+|catalase
MAPPTRPSRPASSSASVPPPPSGGGCPFLHGLGGELHQLAGENNPVLTTQQGIPVGDDQNTLRLDARGPALLEDFHFREKMFHFDHERIPERVVHARGYGAHGFFELTESLSDITKADIFQRKGEKTPLFVRFSTVAGNKGSPDLARDVRGFAIKFYTKEGNWDLVGNNIPVFFIQDAIKFPDLIHAAKEAPDRAFPQAQTAHDNFWDFISLMPEAVHMALWIMSDRTIPRSLRFMEGFGVHTFRFVNAEGHSTYVKFHLKPKLGLQSVAWNEAVKINGADPDFHRRDLWSALNSGDFPEWEVGVQLFDDAFADAFPFDILDATKLIPEEDVPVRIIGRLVLTRPVDNFFAETEQVAFCTQNVVPGIDFTNDPLLQGRNFSYLDTQLKRLGGPNFTHIPINAPHVPVQNFQQDGHMAMRNPRGRANYEPNSWGAEGGPREDPQRGHTSFPAQESGEKRRARPEKFADHYSQARQFYLSQTPIEQRHIADAFTFELSKVETPTIRERMVGHLRLVDEALADAVAGGLGLKALPDAPKPARAPITDLPPSAALSIVANGPQRFEGRKLGLLVSEGADAALLSALIEAVGKEGAQLELIAPTVSGITDSKGVSHKAQQRVEGGPSVLYDAVAVLLSTDGAALLSQKPEARDFVSDAFAHAKFIAFTKEAEPLLEAAGIKPALQDNGFVRLEKADDAARFLKTCGALRFWEREAKKPA
>NZ_CP003182.2|WP_025320340.1|1804561_1805176_+|NAD(P)-dependent-oxidoreductase
MPSIALLGATGNAGSHILKELSDRGHRVTAIARNVSAVPTLPGVTAVTGDAADTATIVPILRGHDAVISALPFPTIDPALLLRAVREAGVKRYLVVGGAGSLEAEPGVKLIDHPDFPAEYKFEASHGVAFLDLLRSSASDLEWSFISPSILFGPGGRTGVFRLGGDQVLRHEGGSSISYEDYAIALVDELEHPAHIRQRFTVGY
>NZ_CP003182.2|WP_025320329.1|1843058_1844786_-|choline-dehydrogenase
MSNLQEYDYIVIGAGSAGNVLATRLTEDAGTRVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAFETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAERDGLEEWSYAHCLPYFRKAETRDIGPNDYHGGDGPVSVTTSKLGRPGGGANPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTKHGRRASTARGYLDQARKRKNLTILTHALTDRILFAGKRAIGVAFLHGGESKIAYARQEVLLCGGAIASPAILQRSGVGPASVLKALDIAPVQIMEGVGSNLQDHLEMYMQYECLEPVSLYPALLWWNQPKIGAEWMFLGKGLGASNHFEAGGFIRSHDDFAWPNIQYHFLPVAISYNGTNAVQMHGFQAHVGSMRSPSRGRVQIVSRDPEVYPSILFNYMSHEQDWREFRAAIRITREIMAQPALDQYRGRELSPGVELTSDADLDAFVRSHAETAYHPSCSCKMGTDDAAVVDAEGRVHGLEGLRVVDASIMPLITTGNLNAPTIMMAEKIADRIRGRAPLPPSDAPYYRADGAPVRGTGMRRAFGHDVNVS
>NZ_CP003182.2|WP_038512596.1|1844804_1846259_-|betaine-aldehyde-dehydrogenase
MTLGLYIHGQVEAGTGEVFSSVNPADGSVLAHIAAAREADIARAVASAQEGQRIWAAMTGIERGRILRRAVDILRARNDVLALLETKDTGKPFSETSTVDIVTGADVLEYYAGLAQAIEGEQIPLNATQFAYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTVIELAKIYTEAGLPDGVFNVVQGRGDVGAMLTAHPVIEKISFTGGVETGKKVMALAGSSSLKEVTMELGGKSPLLVFEDADLDRAADIAVMANFYSSGQVCTNGTRVFVQESVLAAFREKLLARVAKIRPGHPEDPATVFGPLASFPHRDKVLSCIARGVAEGATLLAGGGAPQEAEFSRGAYVLPTVFGDCRDDMAIVREEIFGPVLSLLSFRDEEEVITRANATEYGLAAGVVTESLSRAHRVIHRLEAGICWINTWGGSPAEMPVGGYKQSGVGRENGLVTLGHYTRIKSVLVELGGFQSVF
>NZ_CP003182.2|WP_025320327.1|1846782_1847367_-|transcriptional-regulator-BetI
MPKVGMQPIRRAQLIRATLQSIDEVGLSDTTVARIARIAGVSTGIIAHYFQDKEALLEAAMRQILADLFAAMRARRKAAVDDTPRTLLRAIVEGNFDGTQTSTAAAKAWLAFWSSSMHQPHLRRLQQINAWYLHRLLRTQFLRVQTMEQAHHSALGLAALIDGLWLRATLAGKVNEENIQVAFDYIDQKLITRL
>NZ_CP003182.2|WP_011632312.1|1847437_1848805_-|signal-recognition-particle-protein
MFDTLSGKLTGVFDKLRGRGALNEADVAEALREVRLAMLDADVALPVVKDFIASVRERAAGAEVIDSVAPGQQVMKIVHDALIEQLGGAGAVPLNLNAVAPVPVLMVGLQGSGKTTTSGKLALRLAKKERRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETGRREVYDIVILDTAGRLAIDEELMEEVKAIRAETNPSETLLVVDAMTGQDAVNTARAFNEAVGVTGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGRILGLGDVAGLVEKAAETIDEAEAEEMAMKMLKGRFTLEDYAKQLKQISRMGSLSSIMGMLPGLGKFKQQIENANIDTSILKRQAAIISSMTVKERRSPDIIKASRKKRIAAGAGVQVQDVNRLLKQFDDMSQMMKQFSKLGQKGLMRNGMQALMAQRHRPQ
>NZ_CP003182.2|WP_025320326.1|1849084_1850848_+|Hint-domain-containing-protein
MAAWIGTDLSNNDWNTGDNWQGGSPPYSYQNAVFQNGANAFLSTNHNIEDLSISGTVTIASDGHTLHNDNARLTLAGGSVLVLDNVHLVTQTTIISSGQATIRLQGAQLEIEYGSYMPATLDFQNRHNADDSVSGSTVMINSEGAKANMFASITNLTTRDAIILTNAPTSGSRIYLQANGDGSYSLIEQVPEWGRQTSILCSHVTLAAGLTAGDFTSLNQNGILELVCFLGGSMISTPEGEKPVETIYPGHSILALENGQPVARKVIWSGVATAHVNQDLPDDQAGYPVRIRKDAISDQVPYKDMLITSDHCLYLDGYFIPARLLVNGRTIFYDRSFTSYQYYHIETEKHAIITADGVLTETYLDTGNRRQFSPLSTEQTSGNVTLFGGRKSNWAEDAAAKLAVTPDLVEPVFRRIEARANEFAPPARPSTTTERQLQLKTQDGQMLRQVREINGRVLFMVPAGVNAVRILSNASRPCDVTGPFLDDRRNLGVLIGEAVLYDSGMTHTLNAHLEHEGLEGWHNPPPYEASTGACSGQRWTNGNALLPLGKRQDRAIGLLSLQVLAGGPYIIATPADEDRPINITGTA
>NZ_CP003182.2|WP_025320325.1|1850889_1851987_-|alpha/beta-hydrolase
MTQPSSASSLDRSAREIFRGAHYLARFLSADAEALVPDGPVVVFFETWLPQPDMEAPVTGETFFTHRGLDVIAIKPAANDWYQQDEMTELIDAVLAETKGRRRVGYGGSMGGYAAINFAESLALDDLVAVAPQFSIDPALMPQDWRWRREAEGIAFRQDRMRLIGRLQRGTIIYDPDSEDRPHVRAILMYHDLTPLPLRFCGHHMFRALQQARVLPMLAMNLVLGRFDRAAFRRAFRQGRRKSPVFWLELARGLCTKCWLKAATAALDRARGLAPDDAFAQDVVAGEIARAGGNHQEADRLMQLWRSHENAELAEAARYRMAQWAWYDTRSAEEIEYERAARAAEHLLAASQAIPDFTWPVSHGQ
>NZ_CP003182.2|WP_011632315.1|1852131_1852653_-|translation-initiation-factor-IF-3
MPAPPNRDGPRVNEEIRVPQVRLIDQDGEMQGVMSARDALIRAYAVGLDLLEISPNAEPPVVKILDYGKFKYEQQKKKNEARKRQKVIEIKEIKVRPNIDENDYQVKMRAMRSFISEGDKVKVTLRFRGREMAHQELGARVLQRIREELDAETKVEQMPKMENRQMVMVLAPR
>NZ_CP003182.2|WP_025320324.1|1852865_1854794_-|threonine--tRNA-ligase
MPAITLPDGSVRHYDAPVTGTTIAADIGPGLARAALAMKVDGRMMDLSRALAADAQVVFVTRKDEAALEMIRHDAAHVLAEAVQELFPGTQVTIGPSIENGFYYDFARNEPFTPEDLPAIEAKMREIIARNAPFEREVWDRQEAIRFFQDKGEKYKAQLIQDLPDTETITVYRQGEWLDLCRGPHMRSTGDIGPAFRLMKVAGAYWRGDHRNAMLSRIYGTAWRDQKELDAYLHQLEEAERRDHRRLGKEMDLFHIQEEAVGSIFWHKKGWRLYRALENYMCRRQIEAGYEEVRTPQLVDRSLWEDSGHWDKYREHMFIATVEDEEKTLALKPMNCPCHVQIFRHGLRSYRELPLRMAEFGACHRYEPSGALHGIMRVRSFTQDDAHIFCMPEQIAKETADFVAMLASVYRDLGFDSFRVKFADRPESRAGKDEDWDRAEHELREACRLAGVEYELNPGEGAFYGPKLEFVLRDAIGRDWQCGTLQVDYVLPERLNAEYVAEDGARRRPVMLHRAILGSFERFIGILIEQYAGRFPLWLAPVPVVVAPIVSDANAYAMEVVTALKRAGVTWAEADLRNEKINAKIREHSLAHVPVILVVGRREAEQRQVALRRLGSQEQQVMALDEAISALATEATPPDLRQ
>NZ_CP003182.2|WP_051498416.1|1855072_1856101_+|catalase-family-peroxidase
MPYPVSHHHTRPPYIRAAAAGLLLAAAFSLSSTGPAIAEDGASTPEQIVNVMNTMWGKQTPGQRANHAKGLLAEGTFTPSPDAKKLSRAGIFAGKTIPVTVRFSDATGLPHIADVSPNANPHGMAIRFHDKGHTDVDVITNSLPFFPVRTPEEFLQLLTAISKSKDAPHPTPAEQFIATHPTVAGAVGALKTPSSFARETYNGINTFIFTDSDGKKHPFRFKISPISGAHHLTQQEAEKQKPDFLVDELPMRLKKGPVKFALYAVLAEKDDAIEDGSKRFPADRRQVQLGTISITRIPEDAAKQAAAILFLPGNLEAGIEASADPLIDARNAAYAVSFSRRQ
>NZ_CP003182.2|WP_072490570.1|1856259_1858857_+|S8-family-serine-peptidase
MSFSGLPNDPLFQYQWYLQNTGQAGGTPGIDIDVTPLWSLYTGKGVRVGVIDVGTQLDHPDLVQNIDPTATWDAAQDKPGGGPTIAAENHGTAVAGLIAAAANNGIGGVGVAPDATLGIYHEAEGTVPYPVNPQEFSIAFTHALNDRMDVVNASWGVGTPFAPFMSGLQTLAQQGRNGLGTVIVMSSGDSRGRGSNAIMNATKNSQYVIAVGAIDNTGVVARYSTPGASLLITAPGGSATNPSASTPGSDILSTDRTGSDGYNTLAGAAGDYVYNFNGTSASAPIVSGIVALMLQANPNLNYRDVQQILAQSARITDAGSVKWFQTHSADWNGGGRFYNADYGFGLVDARAAVRLAESYRGRSVTGTEQTLTAAYQPASPVDIALDPSGTAPTRISFTINNAISVEHISLNLNMNVPDSGNLRLGLTSPAGTTAFLLVNIADMQNVPWKQGGFTLTSPIFQGEHAQGTWTMSIWDNAHFSTPTTPDTLTSATLSVTGSQPASHDIVYTNDFPTLASQSATRLTLSSTQPNPVFNASAVSLPVSISIPVQRFSIGGTSASIAPTTTLSALYTGDGNDTLVGGSSAMTFNPGYGDNTVLLGNANNIVNSEGNDTITATQGAATVRASGNAMVFNNAAQLNFVSSAGASTVIGGSGAMNVNGGAGKLTVFGGTGADTIIGSSTGGNQLIANGAGSAVFANGNGNILLGSQTGAVTLATQGANNTVFGGIGGGTILSNGTNDLVVMDLGATTLFGGQNAAIFTNRANANIIGETGPYAVGFGSGTSTAWASTSTDLFLFANGQAGGNVTIGNFQDGKDFIQLQGYGANVVQTVLASAQQTTSGISLTLSDNTHITLLGVTSINQYSFMT

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Crispr_ID: NZ_CP003182_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_5

1877741-1878256

Orphan

Consensus_repeat	Method
GGTCTATCTCCGCGCACGCGGAGGAACC	CRISPRCasFinder
GGTCTATCTCCGCGCACGCGGAGGAACC	CRT
GGTCTATCTCCGCGCACGCGGAGGAACC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP003182_5

>merge|NZ_CP003182|5|1877741-1878256|CRISPRCasFinder,CRT,PILER-CR
GGTCTATCTCCGTGCATGCGGAGGAACCCTCATCCAGCGCACCGGTTACAGCCGGGATACCGGTCTATCTCCGCGCACGCGGAGGAACCACTTCGGAGAGATACGACTGCGACACACCGATAGGTCTATCTCCGCGCACGCGGAGGAACCAAAGATCCAGCGCCAGCATATCCTCCGGTCCAGGGTCTATCTCCGCGCACGCGGAGGAACCTAAGAGGCTAGGCGGCGCGGCGCTGAGTAATACGGTCTATCTCCGCGCACGCGGAGGAACCAGGCAAGTCAGATAAAATGATCGGAGTCTGAAAGGTCTATCTCCGCGCACGCGGAGGAACCGATCGTAGCACTGCCCCAGCCAGCTGAAGATCAGGTCTATCTCCGCGCACGCGGAGGAACCGGAGTGAGCCAGTAGTGGAGACCATCAGATACAGGTCTATCTCCGCGCACGCGGAGGAACCTTGTTTCCCTTTCCGCCTGCCGTCTGGGTGAAAGGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003182|5|4|1877741-1878256|CRISPRCasFinder
GGTCTATCTCCGTGCATGCGGAGGAACC	CTCATCCAGCGCACCGGTTACAGCCGGGATACC
GGTCTATCTCCGCGCACGCGGAGGAACC	ACTTCGGAGAGATACGACTGCGACACACCGATA
GGTCTATCTCCGCGCACGCGGAGGAACC	AAAGATCCAGCGCCAGCATATCCTCCGGTCCAG
GGTCTATCTCCGCGCACGCGGAGGAACC	TAAGAGGCTAGGCGGCGCGGCGCTGAGTAATAC
GGTCTATCTCCGCGCACGCGGAGGAACC	AGGCAAGTCAGATAAAATGATCGGAGTCTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC	GATCGTAGCACTGCCCCAGCCAGCTGAAGATCA
GGTCTATCTCCGCGCACGCGGAGGAACC	GGAGTGAGCCAGTAGTGGAGACCATCAGATACA
GGTCTATCTCCGCGCACGCGGAGGAACC	TTGTTTCCCTTTCCGCCTGCCGTCTGGGTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003182|5|4|1877741-1878256|CRT
GGTCTATCTCCGTGCATGCGGAGGAACC	CTCATCCAGCGCACCGGTTACAGCCGGGATACC
GGTCTATCTCCGCGCACGCGGAGGAACC	ACTTCGGAGAGATACGACTGCGACACACCGATA
GGTCTATCTCCGCGCACGCGGAGGAACC	AAAGATCCAGCGCCAGCATATCCTCCGGTCCAG
GGTCTATCTCCGCGCACGCGGAGGAACC	TAAGAGGCTAGGCGGCGCGGCGCTGAGTAATAC
GGTCTATCTCCGCGCACGCGGAGGAACC	AGGCAAGTCAGATAAAATGATCGGAGTCTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC	GATCGTAGCACTGCCCCAGCCAGCTGAAGATCA
GGTCTATCTCCGCGCACGCGGAGGAACC	GGAGTGAGCCAGTAGTGGAGACCATCAGATACA
GGTCTATCTCCGCGCACGCGGAGGAACC	TTGTTTCCCTTTCCGCCTGCCGTCTGGGTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC

>NZ_CP003182|5|3|1877802-1878256|PILER-CR
GGTCTATCTCCGCGCACGCGGAGGAACC	ACTTCGGAGAGATACGACTGCGACACACCGATA
GGTCTATCTCCGCGCACGCGGAGGAACC	AAAGATCCAGCGCCAGCATATCCTCCGGTCCAG
GGTCTATCTCCGCGCACGCGGAGGAACC	TAAGAGGCTAGGCGGCGCGGCGCTGAGTAATAC
GGTCTATCTCCGCGCACGCGGAGGAACC	AGGCAAGTCAGATAAAATGATCGGAGTCTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC	GATCGTAGCACTGCCCCAGCCAGCTGAAGATCA
GGTCTATCTCCGCGCACGCGGAGGAACC	GGAGTGAGCCAGTAGTGGAGACCATCAGATACA
GGTCTATCTCCGCGCACGCGGAGGAACC	TTGTTTCCCTTTCCGCCTGCCGTCTGGGTGAAA
GGTCTATCTCCGCGCACGCGGAGGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_051498415.1\|1873939_1874965_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP003182.2\|WP_025320312.1\|1875089_1875836_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP003182.2\|WP_025320303.1\|1885983_1888848_+\|DUF4159-domain-containing-protein	unknown	unknown	gnl\|CDD\|379342
NZ_CP003182.2\|WP_025320311.1\|1875832_1877545_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP003182.2\|WP_025320309.1\|1880017_1880674_-\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_CP003182.2\|WP_025287031.1\|1871783_1872770_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373161
NZ_CP003182.2\|WP_038512581.1\|1878779_1880000_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223690
NZ_CP003182.2\|WP_038511319.1\|1888860_1891119_+\|membrane-protein	unknown	unknown	gnl\|CDD\|377775
NZ_CP003182.2\|WP_025320304.1\|1885040_1885970_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP003182.2\|WP_038511324.1\|1884015_1885044_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP003182.2\|WP_025320315.1\|1870842_1871604_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP003182.2\|WP_081366676.1\|1868674_1869766_+\|transporter	unknown	unknown	gnl\|CDD\|213368
NZ_CP003182.2\|WP_025320317.1\|1867510_1868644_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP003182.2\|WP_155760961.1\|1891283_1891727_+\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP003182.2\|WP_025320307.1\|1881442_1882852_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP003182.2\|WP_025320306.1\|1883014_1883929_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176117
NZ_CP003182.2\|WP_025287029.1\|1869880_1870798_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP003182.2\|WP_038512578.1\|1880677_1881217_-\|DUF1285-domain-containing-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP003182.2\|WP_025320318.1\|1867151_1867382_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_081366739.1\|1873023_1873704_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_051498415.1\|1873939_1874965_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	4.59747e-158
NZ_CP003182.2\|WP_025320312.1\|1875089_1875836_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.52632e-92
NZ_CP003182.2\|WP_025320303.1\|1885983_1888848_+\|DUF4159-domain-containing-protein	gnl\|CDD\|379342	pfam13709, DUF4159, Domain of unknown function (DUF4159). Members of this family are hypothetical proteins.	3.53864e-57
NZ_CP003182.2\|WP_025320311.1\|1875832_1877545_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.21495e-154
NZ_CP003182.2\|WP_025320309.1\|1880017_1880674_-\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.8969e-63
NZ_CP003182.2\|WP_025287031.1\|1871783_1872770_-\|hypothetical-protein	gnl\|CDD\|373161	pfam14613, DUF4449, Protein of unknown function (DUF4449). This is a fungal DUF of unknown function.	6.96299e-07
NZ_CP003182.2\|WP_038512581.1\|1878779_1880000_-\|hypothetical-protein	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	9.09828e-69
NZ_CP003182.2\|WP_038511319.1\|1888860_1891119_+\|membrane-protein	gnl\|CDD\|377775	pfam07090, GATase1_like, Putative glutamine amidotransferase. This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown. The structure of this cytoplasmic domain was solved by the Midwest Center for Structural Genomics (MCSG). The structure has been classified as part of the Class-I Glutamine amidotransferase superfamily owing to similarity with other known structures. The monomer combines with itself to form a hexamer, and this hexamer exposes a potential catalytic surface rich in Glu, Asp, Tyr, Ser.Trp and His residues.	4.4988e-06
NZ_CP003182.2\|WP_025320304.1\|1885040_1885970_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	9.76397e-32
NZ_CP003182.2\|WP_038511324.1\|1884015_1885044_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	9.57074e-90
NZ_CP003182.2\|WP_025320315.1\|1870842_1871604_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	3.214e-43
NZ_CP003182.2\|WP_081366676.1\|1868674_1869766_+\|transporter	gnl\|CDD\|213368	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily. The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	3.8943e-107
NZ_CP003182.2\|WP_025320317.1\|1867510_1868644_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.93073e-31
NZ_CP003182.2\|WP_155760961.1\|1891283_1891727_+\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	3.10681e-45
NZ_CP003182.2\|WP_025320307.1\|1881442_1882852_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	7.15793e-161
NZ_CP003182.2\|WP_025320306.1\|1883014_1883929_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176117	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0032e-29
NZ_CP003182.2\|WP_025287029.1\|1869880_1870798_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	2.11342e-149
NZ_CP003182.2\|WP_038512578.1\|1880677_1881217_-\|DUF1285-domain-containing-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	7.61644e-80
NZ_CP003182.2\|WP_081366739.1\|1873023_1873704_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	8.79256e-49

>NZ_CP003182.2|WP_025320311.1|1875832_1877545_-|ABC-transporter-ATP-binding-protein
MMGRLWREHIAHHRVRMLVVILLTALMAGSTALYPVVIQHAIDLFNARDRRILYQIPVLVLIVTAIKGAAMYGQTVSMQQLVLIVIRELQERMFSHLAHADLDRVEREAPAQLAARFTTDAATIREALVRAVNGVGDVVTVVGLVSSMVYLDWVLSLIAAAMYPLAALPIQKIGKRIRRASGGMQERMGETAALLNESFAQARTIRAYRLEDFEIRRAGEAFQHLYSALLRMTRSRARVDPVLEVLGGSAVAVVIGFTGWRAANGQSSLGDFAGFIAALLIASRPLRALGSLNAAVQEGVAGLVRVFAVIDEPAAIRDAPGAVPLPQGQGHVAFENVGFVYADGRTGLDGLSFAAQPGMTVALVGPSGAGKSTALALLPRLRDATSGRVLVDGADVREVTLASLRDAIAYVGQDALLFDDTIAANIGIGREGAERAEIEQAAEAAAGGFIRDLPEGFETIVGPGGQRLSGGQRQRVVLARALLRNPRILLLDEATSALDAESEAAVQQALTRLRQGRTTLVIAHRLSTVRDADLVVAMADGRVAEQGTHTALMEQDGLYARLVRSQTLEL
>NZ_CP003182.2|WP_025320312.1|1875089_1875836_+|VIT-family-protein
MRSRIRHRETHATERLGWLRAAVLGANDGILSTASLMVGVASATSPGSGRGAILLAGLSALIAGAMSMAAGEYVSVSSQSDSERADLAREKKELDADWHGELDELTEIYRIRGLDTPLARQVAEQLMRRDPLSAHARDELGMTEDGAARPVQAALASAASFACGAALPWLAAALAPDPYDAAGQSTGQTSVIWTVSAVSLLALLLLGLAGAWAGNAPKLRAAMRVLLWGVLAMAATAITGHLFGGVVG
>NZ_CP003182.2|WP_051498415.1|1873939_1874965_+|UDP-glucose-4-epimerase-GalE
MNETVSGVSPHRPLRLLVTGGAGYVGSHTVWALHDRGDEVTVYDSLFQGHRQALPPGVRLVVADLSDETTLHATLAEGQWDGVLHFAARSLVGESMVNPMLYMNQNAALGFKLIAACVQHKVPRFLLSSTAALFGHHDDTPIDENAAIQPGSPYGESKLMIERALSWADRIHGLRYACLRYFNAAGADPQGRSGEDHDPETHLIPLVIDAALGLRPEIRVFGHDYPTRDGTCIRDYIHVSDLAQAHLAALTRIDQGSTVYNLGNGAGYSVLEVIRSVERVSGLTVPMRIEARRPGDPAVLVASAEKIRRETGWTPRFPELDDIVATALAWRRAHPQGFDAA
>NZ_CP003182.2|WP_081366739.1|1873023_1873704_-|YceI-family-protein
MTGTWKSVAIGTPFLAGAFLAGAFLAGVGALGFEGGTAHAETASQKIASTDPASIKAGTYVADPAHSQVAFSVSHFGFTHYNGLFSDAQGELTIDPAAPEKTRLRISVPIASVVTTSQKLTEELKSADWLDSAKFPQATFIADKVTLAGKDHAMVPGNLTLHGVTKHVVLRVRLVGTGINPMDKKQTIGFEAYTEIHRGEFGITKYLPVVGDEVKLRIAGAFELKE
>NZ_CP003182.2|WP_025287031.1|1871783_1872770_-|hypothetical-protein
MSHTTHPVPPGPYGDTGWSSQDEYLALDERRIRLSNRISWGAVLAGVVLALVVQALLNLLGIGIGLSSVDAANSSGNPDADTLSMAAAGWWTLSGIIAAFFGGHVAGRLSGTAKLNTARWHGLVSWAATTFVLFYILTTAVGGMVGGAISTVGSGVGHAIGGTASGIGSMVGGIGNAAGTAAARNPDDAKQAYNSLEAQVRSLVNPSDAQAVQNSAVAYVKAKLNGNQQEADRAREQAVNGLAKAANISPDEAKTRLDALEQQYQKTVDEAKQQAIAAAEATRKAAARGAIFGVIGLLLGAVAAWFGGGAGAPEAEAVIHHNHVVRRD
>NZ_CP003182.2|WP_025320315.1|1870842_1871604_-|TSUP-family-transporter
MHLSWALDVFLFAAAFCAGVIDTVAGGGGLICVPALGLTGMGTVAVFGTNKLQSVLGQLSATLKFWRQGGMDFSPLRPGLLCTVVGALAGAMLLQIVSEVFLKRLVPWMLLGVFLYYVLSSDRKDVAGEARLPPHPCKLQPLGVVIGFYNGFFGPGTGSIWTVALSRTYQLRINAATMYANPLNMAGNIAALSILISSSAVDYRRALIMGAGSFLGAQIGGNVVIHKSARLLRTVFMTLMLVSIIGSFLRAYG
>NZ_CP003182.2|WP_025287029.1|1869880_1870798_+|polyphosphate-kinase-2
MNDLSSPIEKSWLALELEDDFDEELEQEIDDSRLPAALRALQNQHRKSTIDRGLYFRELLRLQSELVKLQDWVVHNGLKVVVLFEGRDSAGKGGVIKRITQRINPRVARVVALPAPSDRERTQWYFQRYIAHLPAAGEIVLFDRSWYNRAGVERVMGFASESQVEDFFRDVPEFERMLVRSGIIVVKYWFSITDQEQQLRFMMRIHDPLKQWKLSPMDLQSRVRWEHYTKAKEEMFERTNIPEAPWYIVEGNDKKRARLNCISHLLSLIPYGDVPHEPVALPERVFDPHYERRTLPAELYVPENY
>NZ_CP003182.2|WP_081366676.1|1868674_1869766_+|transporter
MPCHIGAFHRRNRAPMPEIKPPVQDIPMDKPARMPPCYGLLAARDLTARTLLTAPEIEAIFSTGVPEKPIWLHLDLLDTRVTEFIRALPGLPEQACALLCDRNESSHLDTENDAIWGTIPDFAHEVSEEPDPAYMGVLHLVMTPTMLITARRHPLRAPSVIGYGQASLDTTAAQWDHLMRAIMEGISRAAKVLALKLDNMEDRLLQGYEVTRDELAGLRRSVLLLYRRVEPTVELYGEIAEIAPEWIGEAGHDMSRVTSRLESLKRNVMSLQERGRIAQDQLAARNAEETNHSLMILSVLTAILLPPTLVTGIFGMNTTGLPGTSGPGGTYIAFMAILGSVAGACLLLNRLGLLRFRSEKKRR
>NZ_CP003182.2|WP_025320317.1|1867510_1868644_+|Fic-family-protein
MIVKAYDLSAAVKYHSGAFPPGRLNSEALLAPLTEAAASMARYDARITGMVNSALLIAPLLRQDAVTSSRMEGTISTIEDVYRLEAEQEADSDTPYQEARNDDVETYLYIAALTSAQEALENGMPLGEPLIRTAHQRLLSFGRGKNKRPGSYKNEQNYIGDHGSGKIHYIPIGPEQLAPAMGNLVTFIHDNAWPPLIRTAIAHVEFEALHPFEDGNGRIGRMLITLMLWKLGVLTQPHFFVSGYFETHKDAYIEHMRQVSAKDDWTSWVVFFLTALHEQACLNIRTVEAISNLYATMKERFRGILNSQFHDQVLDFVFATPVFRNDRFIERSRIPAASARSLSRRLVEAGLLRTLQPASGRRAAWYAFDPLLDLLSV
>NZ_CP003182.2|WP_025320318.1|1867151_1867382_+|hypothetical-protein
MLQSIIAGIAVLICALFWMQKLAPRAMAPLWSTVSALLRRMRVMPALAERLSPAASPSSTGCKGCDSCGGSKGGCH
>NZ_CP003182.2|WP_038512581.1|1878779_1880000_-|hypothetical-protein
MYPSWLDDPALQDVLAVLPQARPVGGCVRDALAGRPVADIDLAVPMPPEQTLQRLEQAGLHSIPTGLSHGTVTAVSRGQHFEITSLRRDLATDGRHAEVSFTDDWQEDAARRDFTINAMSLSPDGTLHDYFGGLDDLRAGRVRFVGQAGRRVAEDRLRALRFFRFQARYGRWEQGTEPDAAAMQAIAAMARELTQLSAERVWSELRRILTGPHLAAILAAMEQTGVLPVLFPAGYDPAPLVEAVANGMPGEGLAEEAIPRLALLVGEKESPCALAERLRLSGQEAGRLAACLDGSVPVWDGAEDTVSLRRLLADDPAQALIDRAWVMLRDERAAHLTRLLTSLSRPNFPLAGRDLLAAGLAVPGPALGHLLDTLRTEWLRRGCREGEEEKAALLAWGKDGLKAGGT
>NZ_CP003182.2|WP_025320309.1|1880017_1880674_-|CoA-pyrophosphatase
MEVGETVPPCGIASVGRYLRTALALPGPDRVLLRRPEMLADSVSMMRAAAVLVGITEAEEPGIILTLRAAGLSHHAGQVSFPGGRIDPGDASPEHAALREAREEVGLLAEDVHILGRLDPVLTGTGFVVTPVVGLVRPDWVVSIAPAEVAAVFELQLRVLLDPDAPRQDWLEVRGMRHQSWVWPHEQHVIWGATATILMELSLRLRQAEAHLASEPGF
>NZ_CP003182.2|WP_038512578.1|1880677_1881217_-|DUF1285-domain-containing-protein
MGEAAQPGSACCGVLPFLIRRDGTWLYRGSPIARKELVCLFASVLRRDRDGYKLRTPVEEGWIEVEDAPFVAVELDWTGCGRHQTLTFRTNVDQLITAGKDHPIRVAHDILTCEPTPYLHVRDGEDGAPPVEARISRAVYYELVALAEPHDVCCRRMLGVWSCGTFFALGEMPPHAEQG
>NZ_CP003182.2|WP_025320307.1|1881442_1882852_-|purine-permease
MMTGSVSGSAVKKIHPVDQILPWPRLLTLGVQHVLVMYANAVAAPLILGAAMHLDQAHIAMLINADLFACGIATLIQTIGFGPFGIRLPVIMGVTGLCIPPMLAMAATPGVGLQGIYGAALVGGLFGLAIVPMIGRMLLFFPALVTGSIIMMIGISLMRIGINWAAGGVGAADYGSFHHISAAVVVLLTILLLVRFARGFLSHVAVMAGLLMGYMLTILRGDVDFSGLAAEPWMRVVTPLQFGMPSFHLIPCLTMCLLVTITFIEATGMFMALGSVVGKPVSDEDIRRGLRADGLGTVIGAVFNTFPYVSYSQNVGMVGITGVFSRYVCVASGGIMLALGLVPKLAFIVATIPYSVLGGAAFIMFGMVAATGIKILATVDYRTEHNAMLVVALSVGLGVIPLVAPDFFRMLPAAWRPVVADPIVLTAVSAVLLNAFFSRATRLRQTKTEQRLMAVPFTATEHPSEPVRL
>NZ_CP003182.2|WP_025320306.1|1883014_1883929_+|LysR-family-transcriptional-regulator
MRHLRILTHIVDVARSGSIRRSAERMNITASALTRQIQDFEEELGTPVFERTAQGMRLNAAGELIVQHALTRAADLDQIRSRIADLQGVRRGHVTVVCSQAFARLDLPREIEACRRLHPLVSFSIRVLDHSRALEALRRYEADLALVLQRLPDSEIQPLLHYTLPLCAVMAWDHPLARRDGAPVRLRACLAHRLALPERGMATRQALDEALLRLGQTDPEDIAVDSDSMELLTEYVRRAGAVTFQAASPLQGEEAGDLCLRPLDPRDAEPVSCVLGHLRGRVLSVAAAKFADQLARSLHARYGH
>NZ_CP003182.2|WP_038511324.1|1884015_1885044_+|MoxR-family-ATPase
MCIIMPVSMFQNADTHSLETSLAALEATGAKIAAVRTEIGKAIFGQRAVIEQTLVTLLSGGHLLLVGVPGLGKSRLVETLGTVLGLHAGRVQFTPDLMPADILGSEVLEEAEHGRRAFRFIPGPIFCQLLMADEINRASPRTQSALLQAMQEGKVAVGGVEHALPRPFHVLATQNPVEQEGTYPLPEAQLDRFLLQVTLTYPEAADERAMLLATTGAEEARPQQALTAEDLLQAQRLVRQMPVGDSVVDAILALVRGARPETTEDTALRRHLAWGPGPRAAQALMLATRARALLDGRLAPSLDDVAALAPPVLRHRMALGFAARAEGIQLDQLIERLIERIG
>NZ_CP003182.2|WP_025320304.1|1885040_1885970_+|DUF58-domain-containing-protein
MSPAHMAASSHRRTLLRAQAEAERLPPLLAAAERVASSVAQGVHGRRRTGTGESFWQFRPFSPGDTPRRIDWRQSARSGQDAPRGWFIRETEWEAAQTVFLWTDRSDSMQFRSAAATVSKLERADLLLLALASLLLRGGERVRLLGAETRFSGGQAALEALAMALDTLVPGEVPPLSAPVPPFSHAVLIGDFLAPLEEIRASLARLAALPVRGCVLQILDPAEVLLPYEGRVRFTGMEADGEVLLPRVNAVREEYARRLAAQQEGLAALCAGMGFTFSIHRTDRGPELPLLALHQALADSRASNSQAST
>NZ_CP003182.2|WP_025320303.1|1885983_1888848_+|DUF4159-domain-containing-protein
MMFLSPWLLLALGLLPILWWLLRATPPAPRQEKFPSLRLLRDLAMREETPARTPWWLLALRIAAAALVIIGLAGPVSTPLEGLPGPAGSSRSPLLLVLDDGWASAPRWPGILRAAEQSLDRAAMDGRQAALLTTAPGGDGTQPSPSPVMDPALLRARIGALQPQPWATDHRAAAAMLNRLPANGWGVVAIPNGLAQPGDDVFAAALNHLGPVMKVETEGNATLLLRPPVIQPDRLILRVSHTGRSAETDHADVLAQTADGRSLSRTRIVLPATPGTAEAPLILPPEIRNQLARLVLDGPQGAGGIVLLDEQSRRRPVGLVAADRTAADTPLLGPLYYLRRALEPYAEVREGDLKTLLSRDLSVLILADRPVENEEERAAILRFVNKGGELIRFAGPHLAAHPDDLLPVRLLDGDRQLGGAMSWGHPAHLAPFPPGPFAGLPPLGMASPDIRRGDIRSGDQKAEDKTGADIRVSRQVMAEPSTDLATHSWAVLEDGTPLVTERSQGAGRIVLFHVTANTDWSTLPLSGLFVEMLKRLVGLAAGVASIPPDTMLSPAETLDGFGQPGSPPQAATPLRAGDFASTPTSPHHPPGLYGPEQGRQALNIGTAAPALLPAAPIPGARNVTAALLGRQHAFGPGLIATALALLALDMLLSLWLRGMLKRGGGNGGAALATPASKPAFFARRRRMLSLLIGGAITMAALRPRSAPAASGGIAGNPDSHYPSLAIHLAYVVTGNSEQDAISRMGLTGLADFVSGRTAATIAPPIGVVPGRDDLSFYPLLYWPLTSDQNPDALPETMLAALNDYMAHGGIILIDTRDAGAGAGMNGGHERLLQAIGRSLNVPPLTPLTPEHVLARSFYLLHDFPGRYAGGEVWVQRDEDRANDSVSPVIIGGNDWASAWAVDDQGGHPYATIPGGARQRLLAYRFGTNLVMYALTGNYKGDQVHVPSILDRLGQ
>NZ_CP003182.2|WP_038511319.1|1888860_1891119_+|membrane-protein
MQTDHISASDHISASLGFQPLLPLWLLGTLGVLCLLALLPALLRRARGWPWRLAGFAALLIWLGGPMLVQETRQGLADIALLVIDQSGSMALKDRTKLAEQARSILTRTIPQPGRAGEPPLELRTVTVPEHGRDGTKLFAAIAQGLADIPRDRLAGIVAVTDGQVHDVPPSIAKGTPPAFNAPLHVLLTGRGEETDRRLRMIEAPTYGIVGKTVSLRVAVEDLGVANPANGASPGATPVAELTLRRDGETPVKFTVPIGQEYPITLPVTHEGPSVIDMTAATLPGEVSTINNHAVVTLNGVRDRLRVLLVSGEPHQGERAWRRLLKADPSVDLVHFTILRPPEKDDNTPLNELALIAFPVRELFQQKIRDFDLIILDRFQNRGILPQIYLRNIADYVREGGALLMTAGPEYASPVSLANSPLGAVLPAMPHGQESDDPLSAVIEGGFRPQVTPLGTHHPVTEKLPGAPGGGKDTASEWGSWYRYIATDSPDNPGHDQTGHGQTVLATPDGAPLLILDHVGKGRVALLLSDQIWLWSRGHQGGGPQAELLRRVAHWAMKQPELEERALTAQITQGRLTALLRSPEDIPPGTVTVTDPDGKDTSVPLHITGPGRAEASLPATEPGVWRVRYRPPLSAEPASQEGDKAASSELTAFVAASPPDPVEVADLRATATVLNGAARLSGGSMQWLSPAGVPAIRRVSMDAHAAGNGWIGLRRNDAHLVTGIDALPLLPGWIALPLILLLILAAWRREGR
>NZ_CP003182.2|WP_155760961.1|1891283_1891727_+|tryptophan-rich-sensory-protein
MALAGFIAFCLLVAAVDGVFTQGGVRDWYPSLAKPPGTPPNWVFPVVWTTLYIMIGVAGWLLWRRKAWSTLRLWGWQILVNALWNPIFFGLHQIGIALIVIMALLALIFRCIQRFKAIDALAAWLFVPYAVWVCYATYLNVGFWWLN

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Crispr_ID: NZ_CP003182_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003182_6

1968371-1968457

TypeI-E

Consensus_repeat	Method
GGTTCCTCCGCGTGCGCGGAGATAGA	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP003182_6

>merge|NZ_CP003182|6|1968371-1968457|CRISPRCasFinder
GGTTCCTCCGCGTGCGCGGAGATAGACCTCGTGCAGGGCTAAAGCTTCTGCGTGAAACACCGGTTCCTCCGCGTGCGCGGAGATAGA

>NZ_CP003182|6|5|1968371-1968457|CRISPRCasFinder
GGTTCCTCCGCGTGCGCGGAGATAGA	CCTCGTGCAGGGCTAAAGCTTCTGCGTGAAACACC
GGTTCCTCCGCGTGCGCGGAGATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003182.2\|WP_025320263.1\|1964507_1965668_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP003182.2\|WP_025287092.1\|1968916_1969231_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP003182.2\|WP_038511297.1\|1973509_1974196_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP003182.2\|WP_011632408.1\|1970696_1971842_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP003182.2\|WP_011632400.1\|1967118_1968018_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP003182.2\|WP_155760911.1\|1962468_1963914_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP003182.2\|WP_025320259.1\|1969668_1970700_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP003182.2\|WP_025320264.1\|1963927_1964515_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP003182.2\|WP_025320261.1\|1966371_1967115_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP003182.2\|WP_025320258.1\|1972240_1973506_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP003182.2\|WP_025320255.1\|1974859_1975333_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP003182.2\|WP_155760912.1\|1968014_1968311_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP003182.2\|WP_025287099.1\|1975436_1976975_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP003182.2\|WP_025320262.1\|1965664_1966372_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP003182.2\|WP_025320268.1\|1958762_1959407_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP003182.2\|WP_025320266.1\|1959668_1962218_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP003182.2\|WP_025320256.1\|1974366_1974819_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NZ_CP003182.2\|WP_011632406.1\|1969244_1969514_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP003182.2\|WP_025287094.1\|1971854_1972043_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003182.2\|WP_025320269.1\|1958003_1958750_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900

Protein	Function_ID	Function_description	E-value
NZ_CP003182.2\|WP_025320263.1\|1964507_1965668_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.19702e-119
NZ_CP003182.2\|WP_025287092.1\|1968916_1969231_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.13326e-53
NZ_CP003182.2\|WP_038511297.1\|1973509_1974196_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.30878e-65
NZ_CP003182.2\|WP_011632408.1\|1970696_1971842_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP003182.2\|WP_011632400.1\|1967118_1968018_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.32015e-98
NZ_CP003182.2\|WP_155760911.1\|1962468_1963914_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	8.55843e-19
NZ_CP003182.2\|WP_025320259.1\|1969668_1970700_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP003182.2\|WP_025320264.1\|1963927_1964515_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.48313e-09
NZ_CP003182.2\|WP_025320261.1\|1966371_1967115_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.66001e-41
NZ_CP003182.2\|WP_025320258.1\|1972240_1973506_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP003182.2\|WP_025320255.1\|1974859_1975333_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.35096e-59
NZ_CP003182.2\|WP_155760912.1\|1968014_1968311_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	4.01767e-27
NZ_CP003182.2\|WP_025287099.1\|1975436_1976975_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP003182.2\|WP_025320262.1\|1965664_1966372_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	9.48701e-46
NZ_CP003182.2\|WP_025320268.1\|1958762_1959407_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.49599e-32
NZ_CP003182.2\|WP_025320266.1\|1959668_1962218_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.26033e-56
NZ_CP003182.2\|WP_025320256.1\|1974366_1974819_+\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	8.73773e-40
NZ_CP003182.2\|WP_011632406.1\|1969244_1969514_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.1538e-47
NZ_CP003182.2\|WP_025320269.1\|1958003_1958750_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.614e-33

>NZ_CP003182.2|WP_155760912.1|1968014_1968311_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMPATLVITRDVEARYRGYLTSIMLELSAGVYLSPQLSSAVRERTWAVLSDWHSELRRGAIVLAWPDAKSPGGMAIRTLGDAPKEIVDADGVLLVRKS
>NZ_CP003182.2|WP_011632400.1|1967118_1968018_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLHSSRIPHADRAGLLYLARGQLVARDGTLAFLRGPEEDETLPSGEYGIPVQSISMILLGPGSTVSHDALRLLARADTALAAVGEDGVRLYTAPPLGPDRSAVARRQAILWADPKKRVDVARRMYAWRLGEVLPHRDITVLRGIEGARMKEIYRLAAQRAGIVWHGRRYDRANPTAADLPNQALNHAATAMEAAAAIACAAVGAIPQLGFIHEDPGQSLVLDISDLFRDTVTIPTAFAAAKLAERGHENIERLTRRQTGRVLAERSVIPKMIERLKQLFEKETEAIPFLEDDE
>NZ_CP003182.2|WP_025320261.1|1966371_1967115_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MLHLIHLPIEARSFARWARDRGFGPKGTQDNDAVLHHLLTQLFGRQMLQPFRVFTPEQANWSLYAYASQDATALVEQARFSITPDMTEVISLERLRSKAMPDAKPGQRIGFDVRIRPVRRSAKQHDQESEKMQERDAFLAEALHNHADDKTGMKSANRTREMVYRDWLAERMPWATLETARLAHFQRRRILRNGNGIEGPDATIHGTMVIGAPVQFSEALRKGIGRHSAYGYGMMMLRPPDALPPDR
>NZ_CP003182.2|WP_025320262.1|1965664_1966372_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MMRWLVLQWRAPLASFGGTTIDSRGVTRDFPALSAVTGLLANALGLDRTDTTQLDRLQERIVFGARREQEPLLGRMTDFQTALLGNNDRGWTTRGRVEGRDGASNAEASTHIRQRDYHADMQMTVVLHLTPAEEAPTLDDIAKALLKPARPLFFGRKPCLPADYVLAAQEENRWVEAEDARAALIAIPGEGLLRAQWSAAPGKGKSLADRRNWRSGLHGGTRRVEEERITPVTRR
>NZ_CP003182.2|WP_025320263.1|1964507_1965668_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MPKLRFLQIHTLHSYTASLLNRDDRGLPKYLPYGSAVRTRISSQCLKRHWRMDEGTFSLHQIEGAEEAVRSRDLVTKRLREPLQGTVDVNILDAIEPAFQAAVYGKKGADDKSSRQPLLFGAPELRYLAEQFTRIATSATDPKSAKAAAEDFTKDKLFQNTMKAMRDSVSLPGGLTSALFGRMVTSDPEANIDAPVHVAHAFTTHAEQTESDYFAVVDDLAGVEDTGADHIGETELTSGLFYGYVVIDVPALVSNLTGVAASNWLAADRKMAAEVAACLIGQIATVSPGAKLGSTAPYGYATTMLVEAGDRQPRSLAEAFRDPAEPTVQDAEDKLHQKLKAFDEAYQTGEDRRLLSLSNDPGIKNVSRTSLPELMQWVRDTILKAA
>NZ_CP003182.2|WP_025320264.1|1963927_1964515_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSDSHNKAQYNINDIIRNVSQKLAELPPGNLASLRRAIPGSGCREFWRLFYDLNLEQYPLPHAQDNESAWEWVMNAIAYLTPTGQPVIRSEGKEKHKPSAHDKNISFGQALYNIKINQNRMDRLLNSPFEKRREMIMGIVRTMSASRMRFNMADLAEILTSDQKTIHSTDDPIRKLAKDYYEILYANSRKEKANA
>NZ_CP003182.2|WP_155760911.1|1962468_1963914_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MLDKVDNFTALRPHQQHAWHMFLAALGAIALHRADQSAIPETEEKWKDLLLDLTDQAEEPWSLIVDDLSKPAFLQPPVPEGKREVLKNTVYTPDALDILITAKNFDLKAEVAVEAGLDEWVFALVSLQTMQGYSGATKYGIARMNGGFSARPFLGLALPKGGIGAHLRRDIRAMLAGRGKLLDMYRDYDDEGLALLWLEPWDGKTSLSLDQLDPWFIEICRRVRLIKGVDQPIVALAVGSSAARIEAKAYNGITGDFWAPVYDSEGKSFSLDARGFSYRVLCKLLFGEKKQRAARLPQSMQLLPDEQDMILVARGMVRGQGKTEGFHERIIPTQRRIIDAINDDARRLELAEIADKQQQEVAQIISALRLGCAVVYAGGKDPSNDDYAYAGPYIDRLQAEAEADFFTIIHKRFEDDNGAKLLYLKHLIFYANDLLVKASDSIPCSIQNRWRARVYAKNEFDRKLWKKNECPFLNDYNLLCS
>NZ_CP003182.2|WP_025320266.1|1959668_1962218_+|CRISPR-associated-helicase/endonuclease-Cas3
MPIALPPFPWAKFAEPDCWLPLITHLGDVGDCFEALLDLPLYRARLATIIEKEPDRVTIQRLCALAFLHDIGKLSSGFQGKILTKARKGHLLEGYHVLWRKEAGLQDALGLREDLSQWGEAMRSLFLAALAHHGRPIMVVGQEPEQADWAARTGYNPTEAARAIGQACRTRYPDAFGPGPHLPHHTELQHFFAGLVALADQIGSRDCDFPLDRTIRPATKAADVLRNINMDVSRLRQALKPVEPWQLFGWAEGTKLRPMQQALLELSLDIRLAALESETGSGKTEAAFLRFLRLFRAGLVDGLYFAVPTRAAAAQLHRRINHAVQAAFGGECFLALPGYMKAGTSEGWAFLGHRVEWSDNPDEAQKQARWAAETPRRFLAAPVAVGTVDQVMLAGLQVKWSHFRSAALARSYLVIDEVHASDSYMSAVMDRIVQNHVAHGGHALLMSATLGSATRASLLGARKKRKTDSSSPVHAPYPSLSWAEGEERQKQEIHLGIDLTEYQKTVSVNAAPLIADPHAIAGMALEAARQGARVLVIRNTVDQVIATQRAIEALDAKAPTLSVNGIRCPHHSRFAAEDRLLLDHAVEQAMGKHSVPGGRIVCGSQTVEQSLDIDADFMMTDLCPIDVLLQRIGRLHRHAGRHDRPDAFRNARCVVLLPEILSPEINLLRFGLGISRDGGGVYTDLTGLESVRRMINDRAIWTIPQDNRRLVETGTDPQTLTALAQQLGPAWTQARNAVVGGRSAQGTIGRMNLVDCTRAFDGSIDDCFPNDTNIVTRLGADRTALLFAPDTRGPFGEKVSQIFVPGHWVDASVASATGTEWIQPSSEQLVFESAGLSYSRFGLTRSYST
>NZ_CP003182.2|WP_025320268.1|1958762_1959407_-|LysE-family-translocator
MDAFSAIIRFSAAAALLTITPGLDTALVVRTGTVEGPRQAVLAGAGVSAGVLSWGMITALGLGALLAASENAYRVVQMAGAFYLAWLGVTMLRRVFAGGGFPIMLPAGQGRLAANPNWFLRGMMTNLLNPKVGVFYVSFLPQFLPPELPAVSFGALLSGIHAFMGLVFFSAVAVATVPLQRLLTHPTTSRVLDGITGTVMIGFAARLIMEKRSL
>NZ_CP003182.2|WP_025320269.1|1958003_1958750_+|prepilin-peptidase
MGWLLLLIAPFIGSFLGVLSRRWPDGHGIVFGRSRCEHCGHPLSPAQIIPLLSFLWLRGRCRQCGSPIDPFHPMIECAALAVAVCACVARGINNPFLAGDCILGWALLALACIDLRHWRLPDVLTLPLILLGMGEAIWLDPATLLWPRVTGIVVAYGTLTALGVLYRLLRGREGLGAGDAKLFAAGAAWTGLTALPGILLLAALGGLIHAAIRASRGSSFSPHAAIPFGPALAAAIWIVRLLMFQDME
>NZ_CP003182.2|WP_025287092.1|1968916_1969231_+|50S-ribosomal-protein-L21
MFAVIRTGGKQYRVTPNAVLKVEKLEAEPGSTITFTDVLAVGGEGNLTIGAPVVAGASVTATVIAQDRLDKIVVFKKRRRQNSRRKNGHRQHVTVLRVGDIVAA
>NZ_CP003182.2|WP_011632406.1|1969244_1969514_+|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDTEGRRLGVKKFGGESVVAGNIIVRQRGTKVQAGPNVGVGRDHTLFALTDGHVKFLRRAEGRVQVAVTPLAIAAE
>NZ_CP003182.2|WP_025320259.1|1969668_1970700_+|GTPase-ObgE
MKFLDQAKIYVKSGDGGDGVIAFRREKYIEFGGPDGGNGGRGGDIIVEAVANLNTLIDFRYTQHFRAPKGGNGAGSDRTGAAAPDVLIKVPVGTQILEDDRETLIADLDVPGKRITLCRGGDGGHGNAHFKSSTNRAPRRADKGWPGEERWVWLRLKLIADAGLVGLPNAGKSTFLSVVSAARPKIADYPFTTLHPQLGVVRLSLQEEFVLADIPGLIEGAHEGAGLGDRFLGHVERCAVLIHLIDGAAGDVVKAWRTVREEMEGYGGGLTEKPEIIVLNKCDGMTPREASARRSALAKASGQTVTVISGVTGEGVQPLLRQVMTYVAQSREERRKAVSGTSA
>NZ_CP003182.2|WP_011632408.1|1970696_1971842_+|glutamate-5-kinase
MSGSGHEQDEALPRLTTARRLVIKLGSALVVDSKAATPRIEWLRGVAADIAMLRRQGVQVIVVSSGAIALARQALKLTQPRLRLEEKQAAASVGQIRLAQAWSEALSAEGMTAAQLLLTLGDTEDRRRYLNARATLSALLGMGCVPVINENDSVATAEIRFGDNDRLAARVAEMVQADQLVLLSDIDGLYTADPRRDPEASHLPVVRAITPEIEAMGGEPPPGYSSGGMRTKLTAARIATGAGCAMAIALGHTDHPLRALAEGARCTWFLPLPEGRTARKRWIAGSLQPMGTLTVDDGARRALLRGGSLLPAGVVSVDGRFERGDPVLVQGLDGTVLARGLSAYASRDASRIVGRRSEDIESILGWRGRDELVHRDDLVLI
>NZ_CP003182.2|WP_025287094.1|1971854_1972043_-|hypothetical-protein
MAMHTKSLDEEHVYETALYTLRNVEKLLAFLPVPLTRELIQAALMALKEECVVESKEIVEYH
>NZ_CP003182.2|WP_025320258.1|1972240_1973506_+|glutamate-5-semialdehyde-dehydrogenase
MLDGVSETAQQWIAQAGRSARMASSVLARVPHEARQNALRQAASALRDEEATILAANAIDLERSNASAAFRDRLTLTRSRVAAMADGLEQIANLPDPLSRVLSEWERPNGLRIRRIAAPIGVIGMIYESRPNVGADAAGIAIKSGNAVLLRGGSESQHSARAIHKAMQAGLRKAGLPEEAVQIAPDTDRAYVAAMLAGNQVLDLIIPRGGKSLVERVQKEARVPVLAHAEGLCHTYIHKAADREKARSILANAKMRRTGICGATETLLIDAAIAGSLLPVLVEDLSALGCTFRADDAARAIMPGLPAASDADFDTEWLDAILSIKVVDGIDAALAHIARHGSEHTEAIITEDEAAAEYFLSHVQSAVAMWNASTQFCDGGEFGFGAEIGIATGRIHARGPVGPDQLTTYRYLVLGNGQIRP
>NZ_CP003182.2|WP_038511297.1|1973509_1974196_+|nicotinate-nucleotide-adenylyltransferase
MPHFSSTPVPDPLPRFGDRRRIRIGLLGGSFNPAHAGHALIARHFRQKLRLHQVWLMVSPGNPLKSGEDMAPLAARLASARAIADGRHIIATTIESRLGTRYTADTLARLRTLFPCARFVWLMGADNLAGFPRWRDWRGIAADWPFALHPRPGYTARALSGQAASVLRRYRRPEREAPLLADLPPPAWMMLRLPQSPLSATQIRAGFNHTLTGLPSTARAESGPAESR
>NZ_CP003182.2|WP_025320256.1|1974366_1974819_+|ribosome-silencing-factor
MAVSPGSPRKKAAAAGPRAAAAKASEAKDQAVAARERLDAIQAVIIESLEDDKAEDILTLDLAGRAAFTDRMIIATGLADRQISAMAMHLQQKLRDAGVGRVPVEGAGGSDWVLIDAGDIVVHLFKPEARALYRLEKMWSAELDDAESDA
>NZ_CP003182.2|WP_025320255.1|1974859_1975333_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MTAPWRIIAVGRMRGSEEETLFKRYAARLRPALTVTEIAEARGSTAEIRRRETSALLAALPPACIVVAMDLGGRAHDSEALATLARRWREQPLPVCFMIGGAEGLEQPVLDRADHVLSLGPMTWPHLLVRPLLAEQLYRAQAIATNHPYHRTGRPSG
>NZ_CP003182.2|WP_025287099.1|1975436_1976975_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSASPPPRPVMLVILDGWGWREERNDNAIRLARTPAFDRLWNSAPTTFLRTSGLDVGLPDGQMGNSEVGHMNIGAGRVVMQELPRIDAALQDGSVNDLPALRDFITALRQSGGTCHLFGLVSDGGVHAHQDHGAALAQILTRAGIRVAVHAFTDGRDTPPASARRFLTKFLPALPEGATLATLCGRFYAMDRDNRWDRVEKAYRMMVEAEGERYSDPCDAITDAYAREFSDEFIRPAVFGDYAGMKDGDGLLCFNFRSDRVRELLTALLDPAFQGFERPRFLHFSGALGMTRYSTELESLMQTLFPFQEMTNLLGHVVSAAGKRQLRMAETEKYPHVTYFLNGGEEEVLENEDRIMVPSPKVATYDLKPEMSAPELTEKAVTAIGSGQYDLIVLNFANPDMVGHTGSLEAAIRAVETVDTGLGRIVDAITAVGGALFVTADHGNCELMRDPDTGGPHTAHTTNLVPALLYDSSAPIGTRRLTSGKLADIAPTLLDLMQLPQPPEMTGQSLLA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1840132-1840159	0	1.0
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1840417-1840444	0	1.0
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1841842-1841869	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1839562-1839589	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1839904-1839931	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1840189-1840216	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1840474-1840501	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1841329-1841356	0	1.0
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1841899-1841926	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1839619-1839646	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1839961-1839988	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1840246-1840273	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1840531-1840558	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1841386-1841413	0	1.0
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1841956-1841983	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1839334-1839361	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1839676-1839703	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1840018-1840045	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1840303-1840330	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1841443-1841470	0	1.0
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1842013-1842040	0	1.0
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1839223-1839250	1	0.964
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_CP003182.2	1836649-1836676	1	0.964
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP003182.2	1836706-1836733	1	0.964
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP003182.2	1836763-1836790	1	0.964
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1835110-1835137	2	0.929
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1837165-1837192	2	0.929
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1837279-1837306	2	0.929
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP003182.2	1840816-1840843	2	0.929

1. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1840132-1840159, mismatch: 0, identity: 1.0

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagcactgacaaccgtgc	Protospacer
****************************

2. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1840417-1840444, mismatch: 0, identity: 1.0

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagcactgacaaccgtgc	Protospacer
****************************

3. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1841842-1841869, mismatch: 0, identity: 1.0

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagcactgacaaccgtgc	Protospacer
****************************

4. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1839562-1839589, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

5. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1839904-1839931, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

6. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1840189-1840216, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

7. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1840474-1840501, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

8. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1841329-1841356, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

9. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1841899-1841926, mismatch: 0, identity: 1.0

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagaactgatcgtcgtcg	Protospacer
****************************

10. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1839619-1839646, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

11. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1839961-1839988, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

12. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1840246-1840273, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

13. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1840531-1840558, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

14. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1841386-1841413, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

15. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1841956-1841983, mismatch: 0, identity: 1.0

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagctgagcaccgtga	Protospacer
****************************

16. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1839334-1839361, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

17. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1839676-1839703, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

18. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1840018-1840045, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

19. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1840303-1840330, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

20. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1841443-1841470, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

21. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1842013-1842040, mismatch: 0, identity: 1.0

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gctgagccgccattagtgaccgtcgcag	Protospacer
****************************

22. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1839223-1839250, mismatch: 1, identity: 0.964

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagcactaacaaccgtgc	Protospacer
*****************.**********

23. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to position: 1836649-1836676, mismatch: 1, identity: 0.964

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
tcatagccgccagagctgatcgtcgtcg	Protospacer
**************.*************

24. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to position: 1836706-1836733, mismatch: 1, identity: 0.964

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagagttgagcaccgtga	Protospacer
***************.************

25. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to position: 1836763-1836790, mismatch: 1, identity: 0.964

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gcagagccgccattagtgaccgtcgcag	Protospacer
** *************************

26. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1835110-1835137, mismatch: 2, identity: 0.929

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tggtgaccgccagaactgacaaccgtgc	Protospacer
** ********** **************

27. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1837165-1837192, mismatch: 2, identity: 0.929

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagaactgactaccgtgc	Protospacer
************* ****** *******

28. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1837279-1837306, mismatch: 2, identity: 0.929

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagaactgactaccgtgc	Protospacer
************* ****** *******

29. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to position: 1840816-1840843, mismatch: 2, identity: 0.929

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tgctgaccgccagaactgacaaccgcgc	Protospacer
************* ***********.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003182_4	4.1\|1841557\|28\|NZ_CP003182\|CRT	1841557-1841584	28	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2201998-2202025	5	0.821
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3316556-3316583	5	0.821
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	AP013464	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32	10858-10885	5	0.821
NZ_CP003182_4	4.2\|1841614\|28\|NZ_CP003182\|CRT	1841614-1841641	28	AP013750	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C51-MedDCM-OCT-S46-C76, * SEQUENCING IN PROGRESS *	3655-3682	5	0.821
NZ_CP003182_4	4.4\|1841728\|28\|NZ_CP003182\|CRT	1841728-1841755	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	221548-221575	5	0.821
NZ_CP003182_1	1.17\|1562380\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562380-1562411	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	772853-772884	6	0.812
NZ_CP003182_1	1.34\|1562381\|32\|NZ_CP003182\|PILER-CR	1562381-1562412	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	772853-772884	6	0.812
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NZ_CP041755	Pseudomonas sp. KBS0707 plasmid unnamed1, complete sequence	11268-11295	6	0.786
NZ_CP003182_4	4.3\|1841671\|28\|NZ_CP003182\|CRT	1841671-1841698	28	NC_007274	Pseudomonas savastanoi pv. phaseolicola 1448A plasmid large, complete sequence	11571-11598	6	0.786
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1816757-1816788	7	0.781
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1810546-1810577	7	0.781
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NZ_CP012701	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence	181877-181908	7	0.781
NZ_CP003182_1	1.17\|1562380\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562380-1562411	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	647726-647757	7	0.781
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1816757-1816788	7	0.781
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1810546-1810577	7	0.781
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NZ_CP012701	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence	181877-181908	7	0.781
NZ_CP003182_1	1.34\|1562381\|32\|NZ_CP003182\|PILER-CR	1562381-1562412	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	647726-647757	7	0.781
NZ_CP003182_2	2.2\|1571523\|33\|NZ_CP003182\|PILER-CR,CRISPRCasFinder,CRT	1571523-1571555	33	MH673672	Thermus phage phiFa, complete genome	19320-19352	7	0.788
NZ_CP003182_1	1.11\|1562014\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562014-1562045	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	421230-421261	8	0.75
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NC_049478	Arthrobacter phage Mufasa8, complete genome	56478-56509	8	0.75
NZ_CP003182_1	1.14\|1562197\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562197-1562228	32	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	115547-115578	8	0.75
NZ_CP003182_1	1.17\|1562380\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562380-1562411	32	NC_042323	Mycobacterium virus Mozy, complete genome	28290-28321	8	0.75
NZ_CP003182_1	1.28\|1562015\|32\|NZ_CP003182\|PILER-CR	1562015-1562046	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	421230-421261	8	0.75
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NC_049478	Arthrobacter phage Mufasa8, complete genome	56478-56509	8	0.75
NZ_CP003182_1	1.31\|1562198\|32\|NZ_CP003182\|PILER-CR	1562198-1562229	32	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	115547-115578	8	0.75
NZ_CP003182_1	1.34\|1562381\|32\|NZ_CP003182\|PILER-CR	1562381-1562412	32	NC_042323	Mycobacterium virus Mozy, complete genome	28290-28321	8	0.75
NZ_CP003182_2	2.4\|1571645\|33\|NZ_CP003182\|PILER-CR,CRISPRCasFinder,CRT	1571645-1571677	33	NZ_CP021139	Sulfuriferula sp. AH1 plasmid unnamed, complete sequence	22431-22463	8	0.758
NZ_CP003182_1	1.7\|1561770\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1561770-1561801	32	NZ_CP015586	Roseomonas gilardii strain U14-5 plasmid 2, complete sequence	32655-32686	9	0.719
NZ_CP003182_1	1.11\|1562014\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562014-1562045	32	KY471269	Gordonia phage DinoDaryn, complete genome	25251-25282	9	0.719
NZ_CP003182_1	1.11\|1562014\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562014-1562045	32	MT553344	Gordonia phage TZGordon, complete genome	25167-25198	9	0.719
NZ_CP003182_1	1.11\|1562014\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562014-1562045	32	KY471268	Gordonia phage Huffy, complete genome	25251-25282	9	0.719
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NZ_CP035421	Leisingera sp. NJS204 plasmid unnamed4, complete sequence	54646-54677	9	0.719
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NZ_CP038238	Leisingera sp. NJS201 plasmid unnamed4, complete sequence	59218-59249	9	0.719
NZ_CP003182_1	1.24\|1561771\|32\|NZ_CP003182\|PILER-CR	1561771-1561802	32	NZ_CP015586	Roseomonas gilardii strain U14-5 plasmid 2, complete sequence	32655-32686	9	0.719
NZ_CP003182_1	1.28\|1562015\|32\|NZ_CP003182\|PILER-CR	1562015-1562046	32	KY471269	Gordonia phage DinoDaryn, complete genome	25251-25282	9	0.719
NZ_CP003182_1	1.28\|1562015\|32\|NZ_CP003182\|PILER-CR	1562015-1562046	32	MT553344	Gordonia phage TZGordon, complete genome	25167-25198	9	0.719
NZ_CP003182_1	1.28\|1562015\|32\|NZ_CP003182\|PILER-CR	1562015-1562046	32	KY471268	Gordonia phage Huffy, complete genome	25251-25282	9	0.719
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NZ_CP035421	Leisingera sp. NJS204 plasmid unnamed4, complete sequence	54646-54677	9	0.719
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NZ_CP038238	Leisingera sp. NJS201 plasmid unnamed4, complete sequence	59218-59249	9	0.719
NZ_CP003182_1	1.12\|1562075\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562075-1562106	32	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	405275-405306	10	0.688
NZ_CP003182_1	1.13\|1562136\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562136-1562167	32	NZ_CP041155	Leisingera aquaemixtae strain R2C4 plasmid unnamed8	904-935	10	0.688
NZ_CP003182_1	1.14\|1562197\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562197-1562228	32	NZ_CP054025	Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence	288395-288426	10	0.688
NZ_CP003182_1	1.14\|1562197\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562197-1562228	32	NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	228256-228287	10	0.688
NZ_CP003182_1	1.15\|1562258\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562258-1562289	32	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	307806-307837	10	0.688
NZ_CP003182_1	1.17\|1562380\|32\|NZ_CP003182\|CRT,CRISPRCasFinder	1562380-1562411	32	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	393422-393453	10	0.688
NZ_CP003182_1	1.29\|1562076\|32\|NZ_CP003182\|PILER-CR	1562076-1562107	32	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	405275-405306	10	0.688
NZ_CP003182_1	1.30\|1562137\|32\|NZ_CP003182\|PILER-CR	1562137-1562168	32	NZ_CP041155	Leisingera aquaemixtae strain R2C4 plasmid unnamed8	904-935	10	0.688
NZ_CP003182_1	1.31\|1562198\|32\|NZ_CP003182\|PILER-CR	1562198-1562229	32	NZ_CP054025	Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence	288395-288426	10	0.688
NZ_CP003182_1	1.31\|1562198\|32\|NZ_CP003182\|PILER-CR	1562198-1562229	32	NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	228256-228287	10	0.688
NZ_CP003182_1	1.32\|1562259\|32\|NZ_CP003182\|PILER-CR	1562259-1562290	32	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	307806-307837	10	0.688
NZ_CP003182_1	1.34\|1562381\|32\|NZ_CP003182\|PILER-CR	1562381-1562412	32	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	393422-393453	10	0.688

1. spacer 4.1|1841557|28|NZ_CP003182|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tgctgaccgccagcactgacaaccgtgc	CRISPR spacer
tggacaccgccagcacggacaaccgcgc	Protospacer
**   *********** ********.**

2. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.821

tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
ccccagccgccacaactgatcgtggtcg	Protospacer
.* .******** ********** ****

3. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to AP013464 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32) position: , mismatch: 5, identity: 0.821

-tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
ggtgtag-cgccagaactgatcctcgtcg	Protospacer
  ..*** ************** ******

4. spacer 4.2|1841614|28|NZ_CP003182|CRT matches to AP013750 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C51-MedDCM-OCT-S46-C76, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.821

-tcatagccgccagaactgatcgtcgtcg	CRISPR spacer
ggtgtag-cgccagaactgatcctcgtcg	Protospacer
  ..*** ************** ******

5. spacer 4.4|1841728|28|NZ_CP003182|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

gctgagccgccattagtgaccgtcgcag	CRISPR spacer
gcgacgccgccattagtggccgtcgcat	Protospacer
** . *************.********

6. spacer 1.17|1562380|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 6, identity: 0.812

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
catgatcgtcttgccgggtgtgatgccaatca	Protospacer
*.**   ** ***.******************

7. spacer 1.34|1562381|32|NZ_CP003182|PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 6, identity: 0.812

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
catgatcgtcttgccgggtgtgatgccaatca	Protospacer
*.**   ** ***.******************

8. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to NZ_CP041755 (Pseudomonas sp. KBS0707 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagcgttgagcacaaggt	Protospacer
************* *.******* . *

9. spacer 4.3|1841671|28|NZ_CP003182|CRT matches to NC_007274 (Pseudomonas savastanoi pv. phaseolicola 1448A plasmid large, complete sequence) position: , mismatch: 6, identity: 0.786

tgctgaccaccagagctgagcaccgtga	CRISPR spacer
tgctgaccaccagcgttgagcacaaggt	Protospacer
************* *.******* . *

10. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat--	CRISPR spacer
cccctgcttgcgcatcagcgcatcg--agcgtcg	Protospacer
**** *****.**************  *. .*

11. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat--	CRISPR spacer
cccctgcttgcgcatcagcgcatcg--agcgtcg	Protospacer
**** *****.**************  *. .*

12. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP012701 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
acccagcttgttcatcagcgcttcgcccaaaa	Protospacer
 ********** ********* ***.. ***

13. spacer 1.17|1562380|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.781

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
cgtgcaggcattgtccggtgtgatgatgacaa	Protospacer
********.****** ********* ..*. *

14. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat--	CRISPR spacer
cccctgcttgcgcatcagcgcatcg--agcgtcg	Protospacer
**** *****.**************  *. .*

15. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat--	CRISPR spacer
cccctgcttgcgcatcagcgcatcg--agcgtcg	Protospacer
**** *****.**************  *. .*

16. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NZ_CP012701 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
acccagcttgttcatcagcgcttcgcccaaaa	Protospacer
 ********** ********* ***.. ***

17. spacer 1.34|1562381|32|NZ_CP003182|PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.781

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
cgtgcaggcattgtccggtgtgatgatgacaa	Protospacer
********.****** ********* ..*. *

18. spacer 2.2|1571523|33|NZ_CP003182|PILER-CR,CRISPRCasFinder,CRT matches to MH673672 (Thermus phage phiFa, complete genome) position: , mismatch: 7, identity: 0.788

agtcttgtgccagtacctcggcaggc-cggcgag	CRISPR spacer
tgtattgtgccagtacctcagcaggtacagcgt-	Protospacer
 ** ***************.*****. *.***

19. spacer 1.11|1562014|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
cccgaacaggcgcagcatgccgcggacggtgg	Protospacer
.********** ******* **** *.*  *

20. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NC_049478 (Arthrobacter phage Mufasa8, complete genome) position: , mismatch: 8, identity: 0.75

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gtccagcttgtccatcagcgcgtcgatgatct	Protospacer
 .********* *********.*** *.*  *

21. spacer 1.14|1562197|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
gcatcgaccccaatggcgtgaacgccagcggc	Protospacer
. ****** ***.************ *.. **

22. spacer 1.17|1562380|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NC_042323 (Mycobacterium virus Mozy, complete genome) position: , mismatch: 8, identity: 0.75

cgtgcaggtattgtcgggtgtgatgccaatca----	CRISPR spacer
cgtgtaggtattctcgggtgtga----actcgtggc	Protospacer
****.******* **********    * **.

23. spacer 1.28|1562015|32|NZ_CP003182|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
cccgaacaggcgcagcatgccgcggacggtgg	Protospacer
.********** ******* **** *.*  *

24. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NC_049478 (Arthrobacter phage Mufasa8, complete genome) position: , mismatch: 8, identity: 0.75

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gtccagcttgtccatcagcgcgtcgatgatct	Protospacer
 .********* *********.*** *.*  *

25. spacer 1.31|1562198|32|NZ_CP003182|PILER-CR matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
gcatcgaccccaatggcgtgaacgccagcggc	Protospacer
. ****** ***.************ *.. **

26. spacer 1.34|1562381|32|NZ_CP003182|PILER-CR matches to NC_042323 (Mycobacterium virus Mozy, complete genome) position: , mismatch: 8, identity: 0.75

cgtgcaggtattgtcgggtgtgatgccaatca----	CRISPR spacer
cgtgtaggtattctcgggtgtga----actcgtggc	Protospacer
****.******* **********    * **.

27. spacer 2.4|1571645|33|NZ_CP003182|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021139 (Sulfuriferula sp. AH1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcaatcactcgcgcgagccgatagtcgagagaa	CRISPR spacer
gcaatcactcccgcgagccgaaagcccaccgcc	Protospacer
********** ********** **.* *  *

28. spacer 1.7|1561770|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

atccggagatcagcgtcagagccgaggccgga	CRISPR spacer
cctccccgctcagggtcagtgccgaggccgga	Protospacer
 ..*   * **** ***** ************

29. spacer 1.11|1562014|32|NZ_CP003182|CRT,CRISPRCasFinder matches to KY471269 (Gordonia phage DinoDaryn, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

30. spacer 1.11|1562014|32|NZ_CP003182|CRT,CRISPRCasFinder matches to MT553344 (Gordonia phage TZGordon, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

31. spacer 1.11|1562014|32|NZ_CP003182|CRT,CRISPRCasFinder matches to KY471268 (Gordonia phage Huffy, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

32. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP035421 (Leisingera sp. NJS204 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcgtactgcg	Protospacer
 ********** * ************   .

33. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP038238 (Leisingera sp. NJS201 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcgtactgcg	Protospacer
 ********** * ************   .

34. spacer 1.24|1561771|32|NZ_CP003182|PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

atccggagatcagcgtcagagccgaggccgga	CRISPR spacer
cctccccgctcagggtcagtgccgaggccgga	Protospacer
 ..*   * **** ***** ************

35. spacer 1.28|1562015|32|NZ_CP003182|PILER-CR matches to KY471269 (Gordonia phage DinoDaryn, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

36. spacer 1.28|1562015|32|NZ_CP003182|PILER-CR matches to MT553344 (Gordonia phage TZGordon, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

37. spacer 1.28|1562015|32|NZ_CP003182|PILER-CR matches to KY471268 (Gordonia phage Huffy, complete genome) position: , mismatch: 9, identity: 0.719

tccgaacaggctcagcatgacgcgtatgcggt	CRISPR spacer
accgcacaggctcagcttgacgcgatcctggg	Protospacer
 *** *********** *******  . .**

38. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NZ_CP035421 (Leisingera sp. NJS204 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcgtactgcg	Protospacer
 ********** * ************   .

39. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NZ_CP038238 (Leisingera sp. NJS201 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcgtactgcg	Protospacer
 ********** * ************   .

40. spacer 1.12|1562075|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtctggtcgtgccgtcacagaattacccggg	CRISPR spacer
ttgctggtcgtgccgtcccagaaatagctctc	Protospacer
   ************** ***** ** *.

41. spacer 1.13|1562136|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP041155 (Leisingera aquaemixtae strain R2C4 plasmid unnamed8) position: , mismatch: 10, identity: 0.688

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcatactgcg	Protospacer
 ********** * **********.*   .

42. spacer 1.14|1562197|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP054025 (Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence) position: , mismatch: 10, identity: 0.688

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
taatcgacgccagtggcgcgatcgctttccat	Protospacer
 .****************.** ***   .*..

43. spacer 1.14|1562197|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP054034 (Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence) position: , mismatch: 10, identity: 0.688

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
taatcgacgccagtggcgcgatcgctttccat	Protospacer
 .****************.** ***   .*..

44. spacer 1.15|1562258|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 10, identity: 0.688

agcatctctcgtgctggggggagccgcccccg	CRISPR spacer
tctcgttctcgtgctgcggggagccgcccgat	Protospacer
  .  .********** ************

45. spacer 1.17|1562380|32|NZ_CP003182|CRT,CRISPRCasFinder matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 10, identity: 0.688

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
tatgcaggtattgtcggatgcgatgtgccgaa	Protospacer
..***************.**.****.     *

46. spacer 1.29|1562076|32|NZ_CP003182|PILER-CR matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtctggtcgtgccgtcacagaattacccggg	CRISPR spacer
ttgctggtcgtgccgtcccagaaatagctctc	Protospacer
   ************** ***** ** *.

47. spacer 1.30|1562137|32|NZ_CP003182|PILER-CR matches to NZ_CP041155 (Leisingera aquaemixtae strain R2C4 plasmid unnamed8) position: , mismatch: 10, identity: 0.688

ccccagcttgtgcatcagcgcatcgttaaaat	CRISPR spacer
gcccagcttgtccttcagcgcatcatactgcg	Protospacer
 ********** * **********.*   .

48. spacer 1.31|1562198|32|NZ_CP003182|PILER-CR matches to NZ_CP054025 (Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence) position: , mismatch: 10, identity: 0.688

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
taatcgacgccagtggcgcgatcgctttccat	Protospacer
 .****************.** ***   .*..

49. spacer 1.31|1562198|32|NZ_CP003182|PILER-CR matches to NZ_CP054034 (Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence) position: , mismatch: 10, identity: 0.688

agatcgacgccagtggcgtgaacgcgaatcgc	CRISPR spacer
taatcgacgccagtggcgcgatcgctttccat	Protospacer
 .****************.** ***   .*..

50. spacer 1.32|1562259|32|NZ_CP003182|PILER-CR matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 10, identity: 0.688

agcatctctcgtgctggggggagccgcccccg	CRISPR spacer
tctcgttctcgtgctgcggggagccgcccgat	Protospacer
  .  .********** ************

51. spacer 1.34|1562381|32|NZ_CP003182|PILER-CR matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 10, identity: 0.688

cgtgcaggtattgtcgggtgtgatgccaatca	CRISPR spacer
tatgcaggtattgtcggatgcgatgtgccgaa	Protospacer
..***************.**.****.     *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

948210 : 957198

Acinetobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025286326.1\|948210_948939_-	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	1.9e-06	37.7
WP_025320883.1\|949043_950246_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_025320882.1\|950256_950745_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_025320881.1\|950746_951664_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.6e-56	46.2
WP_025320880.1\|951747_952788_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.4e-58	37.7
WP_025320879.1\|952796_953411_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-53	52.4
WP_025320878.1\|953535_955194_-	glycosyltransferase family protein	D6PFH9	uncultured_phage	5.1e-07	24.0
WP_025320877.1\|955190_955652_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_025320876.1\|955659_957198_-	anthranilate synthase component I	S4VNU7	Pandoravirus	1.4e-38	39.4

DBSCAN-SWA_2

1336272 : 1372382

Azospirillum_phage(28.57%)

protease,capsid,head,portal,tRNA,terminase,tail,integrase

attL 1364538:1364554|attR 1374226:1374242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038512824.1\|1336272_1337325_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_025320647.1\|1337485_1338679_-	FAD-binding protein	NA	NA	NA	NA
WP_025286645.1\|1338675_1340133_-	FAD-binding protein	NA	NA	NA	NA
WP_025320646.1\|1340176_1340572_-	VOC family protein	NA	NA	NA	NA
WP_025286647.1\|1340695_1340821_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_155760867.1\|1340962_1341385_+	hypothetical protein	NA	NA	NA	NA
WP_025320644.1\|1341356_1341788_-	DUF983 domain-containing protein	NA	NA	NA	NA
WP_025320643.1\|1342273_1343497_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A2L0V119	Agrobacterium_phage	2.7e-106	47.2
WP_025320642.1\|1343508_1344213_-	Bro-N domain-containing protein	A0A0N9SJU0	Paenibacillus_phage	1.1e-30	58.0
WP_025320641.1\|1344209_1344647_-	hypothetical protein	NA	NA	NA	NA
WP_025320640.1\|1345073_1345463_-	hypothetical protein	NA	NA	NA	NA
WP_025320639.1\|1345499_1346045_-	hypothetical protein	Q775E1	Bordetella_phage	1.8e-22	42.6
WP_025320638.1\|1346285_1346684_-	hypothetical protein	NA	NA	NA	NA
WP_025320637.1\|1346695_1346941_-	hypothetical protein	NA	NA	NA	NA
WP_155760868.1\|1346925_1348005_-	hypothetical protein	NA	NA	NA	NA
WP_025319142.1\|1348009_1348471_-	hypothetical protein	NA	NA	NA	NA
WP_081366652.1\|1348467_1349604_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_025320634.1\|1349573_1350365_-	hypothetical protein	NA	NA	NA	NA
WP_025320633.1\|1350364_1352023_-	hypothetical protein	B0VK48	Azospirillum_phage	4.3e-30	29.0
WP_025320632.1\|1352019_1358193_-\|tail	phage tail length tape measure family protein	M4SPQ3	Rhodobacter_phage	1.4e-09	41.2
WP_025320631.1\|1358192_1358897_-	hypothetical protein	F8TVA4	EBPR_siphovirus	5.3e-14	32.0
WP_025320630.1\|1358953_1359232_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	1.1e-10	42.5
WP_025320629.1\|1359244_1359535_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_155760869.1\|1359536_1359785_-	hypothetical protein	NA	NA	NA	NA
WP_025320627.1\|1359877_1360342_-	hypothetical protein	NA	NA	NA	NA
WP_025320626.1\|1360371_1361616_-	hypothetical protein	NA	NA	NA	NA
WP_025320625.1\|1361649_1362051_-	hypothetical protein	NA	NA	NA	NA
WP_025320624.1\|1362050_1362374_-	hypothetical protein	NA	NA	NA	NA
WP_025319155.1\|1362385_1362700_-	hypothetical protein	NA	NA	NA	NA
WP_025320623.1\|1362696_1363296_-	hypothetical protein	NA	NA	NA	NA
WP_155760870.1\|1363298_1363514_-	hypothetical protein	NA	NA	NA	NA
WP_038512809.1\|1363537_1364743_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	6.6e-89	46.0
1364538:1364554	attL	NA	NA	NA	NA
WP_038512807.1\|1364822_1365452_-\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	1.1e-39	49.0
WP_025320619.1\|1365777_1366524_-	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	4.4e-19	42.0
WP_025320618.1\|1366805_1368068_-\|portal	phage portal protein	B0VK31	Azospirillum_phage	8.1e-82	42.6
WP_081366735.1\|1368067_1369870_-\|terminase	terminase	B0VK29	Azospirillum_phage	6.3e-144	45.2
WP_025319161.1\|1369847_1370282_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_025320615.1\|1370734_1371358_-	DUF3164 family protein	A0A1B0T6G5	Thiobacimonas_phage	2.0e-49	50.2
WP_038512796.1\|1371536_1372382_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.0e-08	25.3
1374226:1374242	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1705298 : 1777333

Bacillus_phage(20.0%)

protease,plate,tail,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025320409.1\|1705298_1706876_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.7e-21	30.6
WP_025320408.1\|1707232_1708372_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_081366667.1\|1708395_1709952_-	GAF domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	5.3e-14	25.3
WP_025320406.1\|1710139_1711822_-	alginate export family protein	NA	NA	NA	NA
WP_051498420.1\|1712952_1715124_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_025320403.1\|1715281_1716154_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025320402.1\|1716150_1717299_+	TDT family transporter	NA	NA	NA	NA
WP_025286937.1\|1717314_1718235_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.4e-14	32.3
WP_038512661.1\|1718235_1719492_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_025320401.1\|1719536_1720364_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_081366668.1\|1720426_1722058_-	DUF563 domain-containing protein	NA	NA	NA	NA
WP_072490562.1\|1722401_1723229_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_155760889.1\|1723238_1724273_-	hypothetical protein	NA	NA	NA	NA
WP_011632205.1\|1724627_1724831_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_011632206.1\|1724844_1725204_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_025320398.1\|1725336_1726407_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.5e-25	35.2
WP_025320397.1\|1726410_1728870_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_025286944.1\|1729038_1730844_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	5.1e-21	25.2
WP_155760890.1\|1731255_1731399_-	hypothetical protein	NA	NA	NA	NA
WP_155760891.1\|1731961_1732126_+	hypothetical protein	NA	NA	NA	NA
WP_025320396.1\|1732182_1732440_+	hypothetical protein	NA	NA	NA	NA
WP_025320395.1\|1732630_1733959_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_025320394.1\|1733973_1736184_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	4.2e-25	23.9
WP_025320393.1\|1736212_1739065_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	2.0e-27	27.5
WP_025320392.1\|1739348_1740815_-	UdgX family uracil-DNA binding protein	A0A127AW33	Bacillus_phage	3.0e-11	30.7
WP_025320391.1\|1740811_1742044_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_025320390.1\|1742352_1743333_+	ADP-glyceromanno-heptose 6-epimerase	M4QHP0	Synechococcus_phage	6.4e-26	32.2
WP_025320389.1\|1743434_1744463_-	hypothetical protein	NA	NA	NA	NA
WP_155760959.1\|1744523_1744703_+	hypothetical protein	NA	NA	NA	NA
WP_155760892.1\|1746098_1747706_-	FkbM family methyltransferase	A0A0P0C5Z9	Ostreococcus_mediterraneus_virus	7.9e-05	28.0
WP_025320385.1\|1747786_1748374_-	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_025320384.1\|1748688_1750080_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_025320383.1\|1750174_1752010_-	Hint domain-containing protein	NA	NA	NA	NA
WP_025320382.1\|1752205_1755178_-	glycosyltransferase	NA	NA	NA	NA
WP_081366669.1\|1755547_1755931_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_025320380.1\|1755969_1759110_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_025320379.1\|1759129_1760437_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_081366670.1\|1760509_1761148_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_025320377.1\|1761184_1762438_-	GTP-binding protein	NA	NA	NA	NA
WP_025320376.1\|1762701_1764747_+	hypothetical protein	NA	NA	NA	NA
WP_025320375.1\|1764848_1765235_-	hypothetical protein	NA	NA	NA	NA
WP_051498419.1\|1765269_1765815_-	hypothetical protein	A0A191ZDK6	Acinetobacter_phage	1.0e-25	40.0
WP_011632251.1\|1765847_1766171_-	hypothetical protein	NA	NA	NA	NA
WP_025318800.1\|1766167_1766410_-	hypothetical protein	NA	NA	NA	NA
WP_025320373.1\|1766394_1767387_-	hypothetical protein	NA	NA	NA	NA
WP_155760893.1\|1767388_1767868_-	hypothetical protein	NA	NA	NA	NA
WP_025320371.1\|1767879_1769526_-\|tail	tail fiber domain-containing protein	A0A0C4K5Y2	Synechococcus_phage	2.2e-18	36.5
WP_081366671.1\|1769575_1770949_-	DUF2612 domain-containing protein	A0A291LB27	Pseudomonas_phage	1.4e-07	23.8
WP_025320369.1\|1771160_1771763_-	hypothetical protein	A0A291LBI1	Klebsiella_phage	4.2e-12	27.9
WP_155760894.1\|1771784_1772756_-	hypothetical protein	NA	NA	NA	NA
WP_072490564.1\|1772806_1773337_-	hypothetical protein	NA	NA	NA	NA
WP_072490565.1\|1773463_1773994_-	hypothetical protein	NA	NA	NA	NA
WP_072490566.1\|1774120_1774651_-	hypothetical protein	NA	NA	NA	NA
WP_155760895.1\|1774727_1775252_-	hypothetical protein	NA	NA	NA	NA
WP_072490621.1\|1775248_1775773_-	hypothetical protein	NA	NA	NA	NA
WP_025320362.1\|1775869_1777333_-\|plate	baseplate J/gp47 family protein	A0A291AYU1	Shigella_phage	4.7e-41	27.0

DBSCAN-SWA_4

1786070 : 1795064

Pseudomonas_phage(37.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051498417.1\|1786070_1786517_-	DUF3277 family protein	A0A0A1IUI2	Pseudomonas_phage	1.0e-10	33.6
WP_025320353.1\|1786543_1787620_-	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	6.7e-69	47.1
WP_025318784.1\|1787612_1788146_-	hypothetical protein	NA	NA	NA	NA
WP_025320352.1\|1788158_1788524_-	hypothetical protein	NA	NA	NA	NA
WP_025320351.1\|1788520_1788841_-	hypothetical protein	NA	NA	NA	NA
WP_025318782.1\|1788840_1789236_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_011632281.1\|1789239_1790190_-	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	9.2e-70	46.3
WP_025320350.1\|1790214_1790664_-	DUF2190 family protein	A0A2I7QSF9	Vibrio_phage	8.3e-05	31.8
WP_025320349.1\|1790666_1791644_-	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	1.3e-42	36.9
WP_025320348.1\|1791671_1792913_-	DUF1073 domain-containing protein	A0A0N9SI81	Pseudomonas_phage	6.0e-29	28.3
WP_051459552.1\|1792946_1794377_-\|terminase	phage terminase large subunit	J7I460	Acinetobacter_phage	1.3e-56	36.9
WP_080504504.1\|1794389_1795064_-\|terminase	terminase small subunit	A0A076GD11	Sinorhizobium_phage	3.9e-06	28.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP003182

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection