CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP007143	Hymenobacter swuensis DY53 plasmid pHsw2, complete sequence	0 crisprs	NA	0	0
NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	1 crisprs	csa3,DinG	1	0
NZ_CP007145	Hymenobacter swuensis DY53, complete genome	5 crisprs	csa3,cas3,DEDDh,WYL	0	2
NZ_CP007146	Hymenobacter swuensis DY53 plasmid pHsw3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007144_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007144_1

158550-158760

Orphan

Consensus_repeat	Method
TGAGTGCCATTTCTCACGTAGATGG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP007144_1

>merge|NZ_CP007144|1|158550-158760|CRISPRCasFinder
AGAGTGCCATTTTTCACGTAGATGCGGTTGGCCCTACTGTTGAGTGCCATTTCTCACGTAGATGGGATTGGCCGGCCTCCTAGTGCCACTTTTCACGCAGGTGGTGCCATTTCTCACGTAGATGGTGCCATCTGTCACGCAATTGGGTGCCATTTCTCACGTAGATGGTGCCGTTTTTCACGCCGAATGGTGCCGTTTTTCACGTAGCAGA

>NZ_CP007144|1|1|158550-158760|CRISPRCasFinder
AGAGTGCCATTTTTCACGTAGATGC	GGTTGGCCCTACTGT
TGAGTGCCATTTCTCACGTAGATGG	GATTGGCCGGCCTCCTAGTGCCACTTTTCACGCAG
GTGGTGCCATTTCTCACGTAGATGG	TGCCATCTGTCACGCAAT
TGGGTGCCATTTCTCACGTAGATGG	TGCCGTTTTTCACGCCGA
ATGGTGCCGTTTTTCACGTAGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007144.1\|WP_081768199.1\|157421_158549_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP007144.1\|WP_081768200.1\|164617_165376_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|378923
NZ_CP007144.1\|WP_044000406.1\|155487_156453_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350130
NZ_CP007144.1\|WP_052345961.1\|148313_151745_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP007144.1\|WP_044000414.1\|167687_168038_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP007144.1\|WP_052345962.1\|151770_153384_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP007144.1\|WP_044000413.1\|165997_166813_-\|PhzF-family-phenazine-biosynthesis-isomerase	unknown	unknown	gnl\|CDD\|223461
NZ_CP007144.1\|WP_044000403.1\|143475_144915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_052345964.1\|162243_163134_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_081768201.1\|167212_167662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143475
NZ_CP007144.1\|WP_044000408.1\|159780_160548_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760
NZ_CP007144.1\|WP_081768198.1\|156872_157208_-\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|214884
NZ_CP007144.1\|WP_081768197.1\|145289_145421_-\|Tn3-family-transposase	unknown	unknown	gnl\|CDD\|376561
NZ_CP007144.1\|WP_155832753.1\|147117_148155_+\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP007144.1\|WP_044000404.1\|145792_146053_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_044000409.1\|161534_162059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_044000412.1\|165549_166008_-\|DUF1572-domain-containing-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_155832754.1\|163560_164616_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007144.1\|WP_052345963.1\|159304_159781_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP007144.1\|WP_052345959.1\|146441_146978_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274376

Protein	Function_ID	Function_description	E-value
NZ_CP007144.1\|WP_081768199.1\|157421_158549_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	6.26671e-42
NZ_CP007144.1\|WP_044000406.1\|155487_156453_+\|family-43-glycosylhydrolase	gnl\|CDD\|350130	cd18618, GH43_Xsa43E-like, Glycosyl hydrolase family 43, including Butyrivibrio proteoclasticus arabinofuranosidase Xsa43E. This glycosyl hydrolase family 43 (GH43) subgroup belongs to the GH43_AXH-like subgroup which includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), alpha-1,2-L-arabinofuranosidase 43A (arabinan-specific; EC 3.2.1.-), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. This subgroup includes Cellvibrio japonicus arabinan-specific alpha-1,2-arabinofuranosidase, CjAbf43A, which confers its specificity by a surface cleft that is complementary to the helical backbone of the polysaccharide, and Butyrivibrio proteoclasticus GH43 enzyme Xsa43E, also an arabinofuranosidase, which has been shown to cleave arabinose side chains from short segments of xylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	2.41521e-153
NZ_CP007144.1\|WP_052345961.1\|148313_151745_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP007144.1\|WP_044000414.1\|167687_168038_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	5.96466e-07
NZ_CP007144.1\|WP_052345962.1\|151770_153384_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.6388e-50
NZ_CP007144.1\|WP_081768197.1\|145289_145421_-\|Tn3-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	9.95372e-14
NZ_CP007144.1\|WP_052345959.1\|146441_146978_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	9.05124e-36
NZ_CP007144.1\|WP_044000408.1\|159780_160548_-\|AAA-family-ATPase	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.04007e-26
NZ_CP007144.1\|WP_081768198.1\|156872_157208_-\|Dabb-family-protein	gnl\|CDD\|214884	smart00886, Dabb, Stress responsive A/B Barrel Domain. The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	1.03082e-12
NZ_CP007144.1\|WP_044000413.1\|165997_166813_-\|PhzF-family-phenazine-biosynthesis-isomerase	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	7.72715e-58
NZ_CP007144.1\|WP_155832753.1\|147117_148155_+\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.04292e-20
NZ_CP007144.1\|WP_081768201.1\|167212_167662_-\|hypothetical-protein	gnl\|CDD\|143475	cd06567, Peptidase_S41, C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn protease (TRI) act as a carboxypeptidase, involved in the degradation of proteasomal products. CTPase homolog IRBP, secreted by photoreceptors into the interphotoreceptor matrix, having arisen in the early evolution of the vertebrate eye, promotes the release of all-trans retinol from photoreceptors and facilitates its delivery to the retinal pigment epithelium.	9.91011e-09
NZ_CP007144.1\|WP_052345963.1\|159304_159781_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.40954e-10
NZ_CP007144.1\|WP_081768200.1\|164617_165376_+\|TraM-recognition-domain-containing-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	4.63471e-25

>NZ_CP007144.1|WP_081768199.1|157421_158549_-|replication-initiation-protein
MAFCVRFGRFSRRSGYLRTLSLWPASSMPIVPASSAALYPRAYQANALVRAPLKLTHVEARIFALALGCIHQDQTELPGISIPLSRVMTQKKGGSVYETIRDACKSLMSKVVSIEAQTGNKKRFTAYSIISYIDLNEGSGFLTGNFAPEIKPFLLQLAEQYTHVEIETLLTLKSAHAHRLYWLLKSWDDVGLWEVDFETLRKQVLGDDNDVTYTLFYDFKRYVLEPALRELHSLGWVVSYQPVKEGKKVKSVRFTIPKPLAQLGEEGLPEQAVRNGTGARTRTGEKQMSLALTAELPTLQQRIVTRLQKLRMTVAQIQHVLAFIGDDEVRIAKLMKVTHPLLRDFEAGNKVFDNLGGAAINLLKTEFPGLYQTLK
>NZ_CP007144.1|WP_081768198.1|156872_157208_-|Dabb-family-protein
MNTSASPALFVHHVLFYMPAGASAADKAMLLEGLQKLARIPSIKLAHIGTPAQTSREVIERTYAYSWLCLFDNAEQEADYQQHPIHDAFRQHYAAYWEKVVIYDALGPVMS
>NZ_CP007144.1|WP_044000406.1|155487_156453_+|family-43-glycosylhydrolase
MKNRFFLLLVFLLIALATTDLRAQNPIIRDVFTADPAPLVYRDTLFLYTSHDTASVQETNYKMPDWRIYSTTDMVHWKDYGTRLSPRLFAWATGDAYAAQCVYHKGKFYWFISTFHQKDDNSQGGAAIGVAVSDRPTGPFTDAIGKALITNEMTKDLPHAWDDIDPTVFVDDDQQVYLYWGNGSCRWVRLKDSMTALAGPITTFTPQNYIEGPWVYKRRKLYYLVYASAGTKPEMIEYCTAPSATGPWTYRGIIQQNVLNSFTTHPGIIDYKGQSYFFYHNGALPTGGSYRRSICVDDLRYNPDGTIQPIVQTTTGVAPIK
>NZ_CP007144.1|WP_052345962.1|151770_153384_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKPTRAAVLLGLLLTSALTQSCKDFLEKEPLGTTTQDNLFRDPTNAVQAVNAVYDVAAWDQGPKWGDPTGQYVAQTYEWMFGDLMTDDAEKGGSSASDFLSLIELKTWNIPPSNPPVTTLWVHSFTGIARANTVINNIDAGTIDAGLKARLKGEALFLRAYFYFNLVKGFGGVPLFEKAVTPTEAPNVTRATIAQTYAFIEKDLEAAATLLPEKSAYAGADNGRATKGAANGYLARVIMYQLGTVNGNNHTWQQVYDLTSTVISSGQYSLLPNYAAIHQEIGENSSESLFEIQFATSNDGYGPISVGTTSNIFQNNRKTFGYGFNNPTQNLVDEFEPNDPRREVTIIKNNDIVLGILNPVDITQNATGYFNRKAAIIAPNAPESGPQNIRKLRYADILLMKAEAAARLSRSGEAVALVNQVRQRARSSTRPPGTTLGSLAYEPANTPAGTLPDLSGGLSGQALLDAIWHERRVEFGEESLRLWDLIRTGRYMGILPAAVRARALSHVATETSVNPTPLLPISLNDAQTWKLAQNPGY
>NZ_CP007144.1|WP_052345961.1|148313_151745_+|TonB-dependent-receptor
MKKAVHFPPPAWPAAKALLLQTALVCLPALAAGAHPVTASAANHLLLAQGVLEQKITLRVEAQTIKATLNQIARQANIRFVYSQQLVGADRKVTINAQDAPLLAVLDEVLAPLKIQYEVANKRVVLQAASRAGATTAAGRPDVPISGRVVDAKGDGIPGVTVIVKGTAIGTGTGPDGSFTLQAPENSVLVFSFVGYTRQEVPVSGATTSLSVTLAEDKQALSEVVVIGYGTARKSDLTGSVASVSGAQLTQVATSDPVQALQGRVAGVEVTSNSGQPGSGTRIRVRGVGTINNSDPLYVVDGIQTSDIGFLLPADIESTEILKDASATAIYGSRGANGVVLITTKHGKAGATQFNLSGYTGFQQVRRTLPLTTAAQYATLVLEAFTNAGRPLPEYAPQLQEAIATNAEGVDYQDLVTQKGLITNYSLSASGGTEQNRYLVSGSYFQQDGIIKNSGFKKFVIRVNDDIVLTKRIKAGVAATFTNNNQTGSGDGQGGSQPYLVLQYALQTNPVLNPFGPNGTYNEDNITRNALNVPRYLDEQKLNKVQNNNLFSSSYIDVALFKGLSFRSTFGINYFNNHPKVYQPQYYIGPVDQRAQSALIETRSENVSWVWSNYANYTKTFADNSSFSATLGQEAQRGYGNGISITAFNVPADVSLQYASASRSTGNVVRSSQYDGSLASYFGRANYNFRDRYLVTGTLRLDQTSKFLGAVRNGYFPSVGAAWNISNEQFLKDVSYLSALKLRASYGQVGNQNAAPNYGYASVATNNQTYSFNGVPAPGLAISQINNPDLKWETAITTDVGLDAELFDSRLTFTADYFERRTQDMIALLPVPDYVGQAPAPANVGALRNRGLELALNYRNEIGKLQYNVGLNFTKINNVVTSLGGGNPIASGNVLPQINNTTLTDVGREIAFFYGLQAQGVFRSQNEIDTYRNAAGDLVQPGAQPGDVRYQDTNGDGVITAADYTYLGSGTPDFTYGGSLGLNYAGFDFKVLLYGVQGAEALNGAGFNLNKSADFVGVWSNFYASRMDRWTPSNPNSDQPRVTSTDTNGNDRMSSRYVEDASYLRARNMELGYTLPQGLLGKAKLTGARVFVSVDNVFTITKYTGYDPEISTAAFYNSPLAYGVDYGNYPQARTYRLGFNVQF
>NZ_CP007144.1|WP_155832753.1|147117_148155_+|DUF4974-domain-containing-protein
MTEPEFHKLLQRYLSGQCTAEEKVLVEHWYDQLEQAEGQEVRAQHQADVEQAIWARLMTHRLPATPEPRVVVLWPAPLRWAAALALLAVSIGLLLLATTRLPAPARLTAVASANGWIRQTNPTRQVQHLLLPDSSHISLHPGSSLRYRTALAGPRREVYLEGEAFFQVSKNPKRPFLVFTKQVLTTVLGTSFRVKAYAGGQQASVAVQEGKVAVQAREGAQLEASPAHPAAQGVLLLPNQQVVYSAARRRLQKELVDRPVVLVPQSFEFEARPVAEVLGALEKAYGVAIIYDKAKLANCTVSITFYDEPLFEKLGLLCKSLGAYYTLSDADILIHSEGCQSQLGS
>NZ_CP007144.1|WP_052345959.1|146441_146978_+|sigma-70-family-RNA-polymerase-sigma-factor
MNAGDEAAFAELYKRYSYQLFNVAYGKLKNRETAEELVQDLFETLWSKRTDVHIQQLSPYLFSALRYRIINYIKSEKVRTSYELFCRLHHTDADPGTEATVALNDLNEALAAGMQHLSEKAQEVFRLSRLEQYTIPEISVRVNLSEKTVEYHLRKSLKLMRLYLRNFLLLWPIWFFIK
>NZ_CP007144.1|WP_044000404.1|145792_146053_+|hypothetical-protein
MFLRFGLLQQELSLLVRHAFTGWDVRLFVGLGEVFVIGSDFRHKSFLLLLLVRTVLYPMVAALWLPVAAGSKYLGCTCRGPKFRPD
>NZ_CP007144.1|WP_081768197.1|145289_145421_-|Tn3-family-transposase
MLKRLNSYSRHHPLHLALRELGRTVRTEFLLRYMDDQDLRWAH
>NZ_CP007144.1|WP_044000403.1|143475_144915_-|hypothetical-protein
MVPHFLRIQQPASLLPERSCTTNRGLGRQVRAVGLLLAAVGSGGAAQAQQAPWQWLVQSAETRSAVLQRLTTDVAGSVYMTGRFTGQIRFGTTRLVSQGRSDTFVAKLTAGGQWAWAVAAGGAENDGATDLTLDNDGNLLVAGSFGGQATFGGRQVTSNGGQDVFVAALTPQGEWRGVLTAGGPEQDEALALTIDKQHNVLLGGRFQGEATFGSHRLHATAGNDGFVARLGEGGSWSWATQLGATEQGAVRRMVVDTQGAIVVTGYVGGTGQFGTHPLVSQGTHNAFVAKLNGAGAWQWATGARSESTTYGNALALDEQDRIYVTGSCSGPTAFGPHQVTSHGGDDTYVARLSAAGQWQWVTSVQGPALEAGRDLALSALGTLYVVGSSSPAATCPGTVLAGKGGLDVFLARLTTEGKWLNVQALGSQGADEGTALVLAPNGEALVGGTFSLPEPASEVTPQVFVGRFRFPVTTPHDLQ
>NZ_CP007144.1|WP_052345963.1|159304_159781_-|hypothetical-protein
MGFEKPQITPRRRIEVPEEARQQARAGMGGEATRTATAPPTPVEPIAAPAAVATPAPAPAPVEVAAPDAAASAPASAAPVRASSRGRKPAAAAAPAPEAEVPLHTVQIAKSVVQEIKMSLLLATPGPDTPTNIKNYLEAAHRHYDAHLRKTGKLPPAK
>NZ_CP007144.1|WP_044000408.1|159780_160548_-|AAA-family-ATPase
MSKVISFATQKGGSGKSTLALVLAAPLATEYGLRIAVLDCDYQQSIVKTREQVDAANFAKLREANPDAQYPYDVYPWQLSRIFDFIDNPEHTYDLIIIDVPGRADGDDVFNALTACDAVIVPLVSDYLDRASTAEFMTILEAIKKAADDAQIDFQYYGLPTKRVAGQREEKEMDEYIDGLGLSRFNSYLGHRKAYTRASTLYSLLNPAWARYAGGTKDTSDEIRRVCEELIERLGLPDRRATAATSVSTVSSSAK
>NZ_CP007144.1|WP_044000409.1|161534_162059_+|hypothetical-protein
MSTELRKRVTLDNNAHRKAEAAAAEVGASLGVYASAAVEYFATRGLDPRETEAREGQLIMQQIKKLGDRVFGLLQEQERTLLTAMLEEMLRTRITLERVLRLNEMLVGNLNAQLETRSEAQLQRQQQALQLLRQRNEEAVEKQVKEALEAAQKVGPRTRSNPAEAAAEQGPQGR
>NZ_CP007144.1|WP_052345964.1|162243_163134_+|hypothetical-protein
MSAAQVQQAINTNVKGLQAGEAKFYSLVLSPSEQELAHISSDPEKLRAYTRQVMQQYAQNFALPGGRQLSSQDIVWSAVLHQDRTHRGTDPEVVAGTAKVGEKRACRQAHVHVIVSARDAEQKLTLNPGGRRQWFDLMRWQAAAGRQFEQQFGHVAQAHEKLRPKGTRQRDPSYDASRLEKIARRVARINLLVPREQHLAPDTVQSIALARQFDKTFYRMLTRVEERARDGRPIDNALQLLRMGREQAAAPQRQAITALHAVQHLVRRARQATQDERTEHVAEKPGRRGAELDIEM
>NZ_CP007144.1|WP_155832754.1|163560_164616_+|hypothetical-protein
MVLLAAGVLVFVLPAPARKPGGPVRRKPLRPEAVRVVVASCAGLFLLSAYVLLTMASYQPGFIQVGYPVAVAVALASGFVVGLLRAATKCPAFGLRVDRKKLATPDGFNLPTEGGGWVNVPNPYRGVLVLGGAGAGKTYFIGEPVVEQLAAKNFTELIYDFKLPVLAEVAQKALELAGRRQSPPRPLPSGEPEPAVVLHVINFRDLQRSERVNPLRAEDLPVVAFAEEYSRVINNLNPQSIRKMEFFDISAVAYLTGIIWFYKKHFPRYCTIPHVVATAIHKDFKHVLSMLETDPECAGMVRSIVRAVEQRAEKQVAAVVGTLQVILNRINSPEIVWVLTPDEAKGEGVLA
>NZ_CP007144.1|WP_081768200.1|164617_165376_+|TraM-recognition-domain-containing-protein
MNDPKEPALLCIGNDPTLKETFSPVVSCIITVAIKLMNQQHKHRSYVLLDEGATVYVPGLELLPATARSNQVVTIYMTQDLAQMTDAYGPEKMKVMVSNLNNQFFGKVNSLDTAKFISELVGREDKLIHSTSAGKSQGGGGGRGSHSSNLSTSYQERSLVRVQDAIGLQQGEFIGQTVETERTFFQGVISRADATQERFPLHPVATFGTGEEDGGAALSAVVQENYRRVQQQIKETVALQVNTLAGGLEGDR
>NZ_CP007144.1|WP_044000412.1|165549_166008_-|DUF1572-domain-containing-protein
MSTETLIALFRRDLARLRREIELYNQEHRLWLTAGAIPNSAGNLCLHLLGNLNTYIGQQLGRTGYVRERELEFSLRHVPRAELLLRIDQTSEMVTATLASLPAASLPAEYPLLVLEHKTSTEYLLIHLATHLTYHLGQINYHRRLLDHVSDQ
>NZ_CP007144.1|WP_044000413.1|165997_166813_-|PhzF-family-phenazine-biosynthesis-isomerase
MQTYFVDSFTTTRFAGNPAAVCLPAHELSAATMQQVAREIGFSETAFLRPAATGSGYRIRFFTPKQEIPLCGHATLAAAKVLFETTGRRQALFVNHAGIELPCEQAEDSIRMRFPVYPTEALPVPAAVLQALGLATCLAARYSQRNKIILLEIASAAALAELQPDFEALLRAYDGINGVLVTAPGDTPAYDFHYRYFWPWAGTNEDPVTGGVHTFLTKYWADKLGKPHLRAFQSSLRTGHMRTELLADGVHIYGEAVLVLAGTFYLEPHEH
>NZ_CP007144.1|WP_081768201.1|167212_167662_-|hypothetical-protein
MSFTREPLRGPFVVGSHPIRAVLGSAAFLHLDRDQKAEPLAQLGRGEGGDPVVAVLTDTLTASSGEAVAVAFKARKHTRSFGAGTCGVSTGRSRFDLSDGSVLLLTTAVFADRRLVRYGHSIAPDEPLKPAEVVPRATRWIREEYQAKN
>NZ_CP007144.1|WP_044000414.1|167687_168038_-|nuclear-transport-factor-2-family-protein
MNPNEDLITAAYAAFNARNLPAVLATLHPQVRWSRAWEGDYATGHEEVRQYWQRQWQELDPHVEPTRIRELADGRLEVAVHQVVRDKQGNLLFEGPVKHLYTIREGLLQQLDIEQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007144_1	1.2\|158615\|35\|NZ_CP007144\|CRISPRCasFinder	158615-158649	35	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	158615-158649	0	1.0

1. spacer 1.2|158615|35|NZ_CP007144|CRISPRCasFinder matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 0, identity: 1.0

gattggccggcctcctagtgccacttttcacgcag	CRISPR spacer
gattggccggcctcctagtgccacttttcacgcag	Protospacer
***********************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007145_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007145_1

689517-689597

Orphan

Consensus_repeat	Method
TCCCAGGGCTGAAGCCCTGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007145_1

>merge|NZ_CP007145|1|689517-689597|CRISPRCasFinder
TCCCAGGGCTGAAGCCCTGGGCTACGTAGCGTCCGCCCGTTCTCTCTCACTCTCACTATCCCAGGGCTGAAGCCCTGGGAT

>NZ_CP007145|1|1|689517-689597|CRISPRCasFinder
TCCCAGGGCTGAAGCCCTGGGCT	ACGTAGCGTCCGCCCGTTCTCTCTCACTCTCACTA
TCCCAGGGCTGAAGCCCTGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007145.1\|WP_044000987.1\|690568_692269_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|377138
NZ_CP007145.1\|WP_044000985.1\|688114_689467_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP007145.1\|WP_044000989.1\|694605_695166_+\|potassium-transporting-ATPase-subunit-KdpC	unknown	unknown	gnl\|CDD\|172503
NZ_CP007145.1\|WP_052346110.1\|675097_675427_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_155832818.1\|675656_676547_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044000979.1\|673007_673904_-\|glycoside-hydrolase-family-16-protein	unknown	unknown	gnl\|CDD\|185693
NZ_CP007145.1\|WP_071883059.1\|681425_682616_+\|DUF4249-domain-containing-protein	unknown	unknown	gnl\|CDD\|379442
NZ_CP007145.1\|WP_044000983.1\|682656_684801_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237874
NZ_CP007145.1\|WP_044000990.1\|695552_696662_+\|porin	unknown	unknown	gnl\|CDD\|369446
NZ_CP007145.1\|WP_044000984.1\|685107_687291_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224684
NZ_CP007145.1\|WP_044004114.1\|678081_681108_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP007145.1\|WP_044000993.1\|700140_700542_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044000994.1\|700618_700966_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044000980.1\|674122_674971_-\|peptidase-M12	unknown	unknown	gnl\|CDD\|239807
NZ_CP007145.1\|WP_044000988.1\|692358_694407_+\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NZ_CP007145.1\|WP_044000992.1\|698257_700006_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|380161
NZ_CP007145.1\|WP_044000991.1\|696903_698079_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225115
NZ_CP007145.1\|WP_044000981.1\|676661_677924_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP007145.1\|WP_052346111.1\|689911_690265_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_129922805.1\|690400_690478_+\|K(+)-transporting-ATPase-subunit-F	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007145.1\|WP_044000987.1\|690568_692269_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NZ_CP007145.1\|WP_044000985.1\|688114_689467_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP007145.1\|WP_044000989.1\|694605_695166_+\|potassium-transporting-ATPase-subunit-KdpC	gnl\|CDD\|172503	PRK14002, PRK14002, K(+)-transporting ATPase subunit C.	1.35224e-90
NZ_CP007145.1\|WP_044000979.1\|673007_673904_-\|glycoside-hydrolase-family-16-protein	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.67284e-37
NZ_CP007145.1\|WP_071883059.1\|681425_682616_+\|DUF4249-domain-containing-protein	gnl\|CDD\|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	3.02601e-42
NZ_CP007145.1\|WP_044000983.1\|682656_684801_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	0
NZ_CP007145.1\|WP_044000984.1\|685107_687291_+\|S9-family-peptidase	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	3.08652e-107
NZ_CP007145.1\|WP_044004114.1\|678081_681108_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.85763e-39
NZ_CP007145.1\|WP_044000980.1\|674122_674971_-\|peptidase-M12	gnl\|CDD\|239807	cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.	4.28766e-77
NZ_CP007145.1\|WP_044000988.1\|692358_694407_+\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NZ_CP007145.1\|WP_044000992.1\|698257_700006_+\|HAMP-domain-containing-protein	gnl\|CDD\|380161	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK. This model describes WalK as found in Staphylococcus aureus (sp\|Q2G2U4.1\|WALK_STAA8). A shorter version, as found in Streptococcus pneumoniae, called WalK(Spn) or VicK, is not included. WalK is part of a two-component system and works with partner protein WalR.	5.53286e-64
NZ_CP007145.1\|WP_044000981.1\|676661_677924_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP007145.1\|WP_044000990.1\|695552_696662_+\|porin	gnl\|CDD\|369446	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like. bbp2. BBP2 is a family of putative porin proteins that are likely to be outer membrane beta barrel proteins porins.	5.35098e-91
NZ_CP007145.1\|WP_044000991.1\|696903_698079_+\|histidine-kinase	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	3.50091e-125

>NZ_CP007145.1|WP_044000985.1|688114_689467_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MPNGTLLLIDDETSLRQMLARVLELEDYTVLQAPDARRGLEMLRQHAEDVLVVLSDVKLPDGYGLDLLPRYKQVAPLAEVILMTAYGTIPDGVRAMKEGAFDYLTKGDSDDQLLVVVDRAAEKARLQRRVADLEKKVGAQYSFDSMIGRSGALLQARKLAERAAPTDSTVLLEGPTGAGKELFAQAIHQASPRRSKPFVAVNCSAFPKDLLESELFGYKKGAFTGALTDKKGLLEEANGGTLFLDEIGELELNVQAKFLRVLETQQFTKLGDTRPTSVNVRIVAATNRNLRQEAEAGHFRPDLYYRLAVFTVPVPGLNERREDVPLLAEYFLQFFAGKLRRRLRGLEPEVLEQLRRHDWRGNVRELKNVLERAAILADGDTLTTDDLPAEFHYLPAAPTTDEASDNSLRTIEKRQIRQVLHDTGGNKMEAARQLGIGTKTLYRKIQEYGL
>NZ_CP007145.1|WP_044000984.1|685107_687291_+|S9-family-peptidase
MKHPVLLPLLGGLLLTTAALAQPSVPAAPTGAASDTYFGVKVDDPYRNLENLQDPAVASWMKAQSEYARRTLNAIPGRQGLIDKMVEIDKRKAARVSDLRVADNDRYFYYKSRPQDQQPKLYCRDGYKGQEVLLFDPEAYEKGKVYNINGFAPSPDGSKVSFGISEKGTELGRTLIMDVKTRKLFPEQIPLNRGGGEWLPDNQTLAYMPYNNGDLKDMAARQNMQCRLHRLGTPVAQDQAVFSSQLYPKLGIKPSDYPYAGIDRDTKLAYGFLYSVDRYMNVFYAPAAALTKPNIPWQPLFRPTDEVTNFVTDEQHIYFVTSRNTPRQKLMRMPAARPNVATAEVLVPESADESIMDEQLKSTKDGVYFVRSRNGVEARLYFVPRGRKAAQELKLPRAAGRIELTSKNAQSSDLWVTLGGWTTDRQRYRYSPASGKFTPEPLSSEAQYPEFAGLVVEEVLVPSHDGVQVPLSLVYKKGLKRDGSAPTLMVGYGAYSISMEPTFMPPFLLWTQQGGILAVPHVRGGGELGEAWHKAGQKATKPNTWKDLIACAEYLTKNSYTAPGKIAINGGSAGGILIGRAMTERPDLFAAAIPEVGCLNAVRMENSPNGPVNVPEFGTMTKEDEAKALLEMDAYHHLKAGTSYPATLITAGFNDPRVIAWQPAKFAARLQASNIGSKPVLFFTDYEAGHGMGDSRLKQFEAIADLMAFGLWQTSSFGFQPDKVAVK
>NZ_CP007145.1|WP_044000983.1|682656_684801_-|DNA-polymerase-III-subunit-gamma/tau
MENFVVSARKYRPATFRSVVGQQHVTTTLQNAIASQHLAQAFLFCGPRGVGKTTCARILAKTINCEFVEEHVRKSRPVSELIKTQPDIVPDALLAAADPDNTPFDLEACGKCSSCRAFQENASFNVHELDAASNNSVEDIRSLVEQVRYAPQQGRFKVYIIDEVHMLSNAAFNAFLKTLEEPPSYAIFILATTERHKIIPTILSRCQIFDFNRIKVDDMRNHLRYVATQEQIQAEDDALHLLAQKADGGLRDALSMFDQMVTFSGHNLRYQDVVQNLHILDYEYYFRLIDALLTENLSATLLLLDEVMQQGFDLHNFVVGAAEHLRGLLVCKDPVTVQLLEVSDNIRARYVQQAQAAPLAFLLSALNLVSLCDREFKQAKNQRLHVELTLMKLAYLNGAVQFARDLQGAPASADNGEAKKKSSVIPAPAPVTAPPAANGRLVADGTAETPAVYNAAPAAQQPTTNNQQPLIHAPADPEPIVPVESGVEELHDTPSIEDEAATQVPTTRQLRDTVPHVEIGAPSIAGHEPGQMAVTAAPMPPPRPGMPPAGKPLGLGTKLPGLGSLSAMKAQMEQKAAAGKAATDAEPTGPTTGLPAINDEVLQRVWKELTEERKPISMMHYSLLNRPVQANEQHMILLRVDNPVQEDLFSELRAEFLGELRRRTGYPRLNVTVEVVERVETGRKLYTSTDKMDYLMEKYPMLGEMKQKLGLDVD
>NZ_CP007145.1|WP_071883059.1|681425_682616_+|DUF4249-domain-containing-protein
MAYMWRVLWWLSGGMTAVSLAGCIELFEPVVPGSSRDFLVVDGFINIQGRTRIRLSHTSDINSTTANAAEAKAALYIEEEMGVQYAMRDAGNGNYVSDSLLLNPAKRYRLRIKTALQREYTSAFVDARVTPPIDAVTWKNRPLGIQVYVSAHDNDSRTHYYRWEYIETWEYISPWNSLYEYSPPGPLPPGNYILPLGVITVRTKPINRCWATEYSNDIQLGSSVRLAQDVIADYPLRLLPASSANKLQEKYSVLVRQYGQTAEEYAYWEKLKKNTEVLGTLFDPQPSQLTGNIQNIVEPGEVVIGYIGAHSVAEKRLFISRAELPADFSNFTGYEQCVKQDSVTNPGLLPYYLYPGTQMLIDVVEVNQTKNYLIAKTECVDCQKRGGVTQKPAFWR
>NZ_CP007145.1|WP_044004114.1|678081_681108_-|insulinase-family-protein
MLLLPALASLGLTQCQTSKPAATAAVTAPATSAEASKPKEYAYQTVEGDPLKARIYTLDNGLTVYLSDYKDAPRIQTYLAVRAGSKNDPSTATGLAHYLEHMVFKGTSRLGTQNWAAEKVELDKIEALYEQYRAQRNDPAARKRTYHQIDSISGVAAKYAVANEYDKVMGAIGAKGSNAYTSVEQTVYQEDIPSNQLEKWAAVQAERLGEMVPRLFHTELEAVYEEKNRGLDSDFRKEYEALSASLYQQHEYGTQTTIGTIDHLQNPSITEIKRYFEKYYVPNNVALCLSGDLDYDQTIRIIDQYFGKLQSKPVEAFVAAQEAPITAPIVKQVLGPDAENVMLGFRLPGTTTRDALVLRMIDKILSNGQAGLIDLDLNQKQAVLSAASFTDINNDYSSHILYATPRQGQKLEQVRDLLLAELNKVKQGNFPEWLIPAIINNEQLQRTKSYESNEARAGAFVAAFVAREDWKDYLKQTDDFGTITKEEVMRVANQYYGPGYALVYKRTGQDPNKVKVVKPAITPVPVNREVASDFYKEVTAKPAPALQPVFLDYKKDIQETKLASGVPVYYTHNSENNLFNLYYVLDLGTNNDPKLGLATDYLQYLGTGKYTAAQLQQEFYKLGCSFAVQSGQDRTFVSLSGLDSNFEKALQLFESLLAAPKPDAAALQNMVAGVLKARQDAKLNKGVILNQALVNYAKYGAKNPFTTQLSEKELKALKPEQLTSLIQKLPTYQHRVLYYGPRKVEGIATATVSTNGDEKGRREWESATGIVNTLNQLHRVPAKLTPTPAAKDFAEQPLTERKVYWVDYNMVQAEILFLSKGPVYDKGLVPTTSLYNEYFGGSMGSIVFQELRESKALAYSASSRFASADKAGRSSYNLSYIGTQSDKLPEAMAGMNTLLNDMPAAEANLQIAKDAIRNSIATERITKSDVLFSYERAKRLGLDYDLRRDVYEQTPNMSFQDLLKFQQARVKGQPQTILVIGSKDRLNFKELAKYGQVQQLTLKEIFGY
>NZ_CP007145.1|WP_044000981.1|676661_677924_-|NADP-dependent-isocitrate-dehydrogenase
MAEKITIKNGKLNVPDQPIIPFIEGDGTGPDIWAASVRVFNAAVEKAYGGSRKLVWKEVLAGEKAFKQLNNWLPNETLDAFRDYLVGIKGPLTTPVGGGIRSLNVALRQELDLYACVRPVRWFEGVPSPVKHPELTDMVIFRENTEDIYAGIEYMNGTPQAQKMLEFLQDEMGVKKIRFPETSSFGIKPVSKEGTERLVRAAIQYAIEHKKPSVTIVHKGNIMKFTEGAFKTWGYELAEKEFGDKVYTWAQYDKVLAKQGQEVADAQQKAALDGGKILIKDSIADAFLQQILLRPADYSVVATLNLNGDYISDALAAIVGGIGIAPGANINYLTGHAIFEATHGTAPKYANQDKVNPGSVILSGALMLEHLGWQEAADLIYKGLEAAIAAKRVTYDFERLMEGATLLKCSEFGDEIINRM
>NZ_CP007145.1|WP_155832818.1|675656_676547_-|hypothetical-protein
MNHSIGIFENFDTTNFLTATGFILALLGIYLTVNFKGFGFTVLMNTYRNIAPMYNKELPDIEIHYKHKKVKNLNQCIIFMQNDSKTSITDKDFIKRITLDISKDIKLHNTSNDVSEIFHSSNSFSNSVFIFYRETNTLVFDIDLVEPEDMIAIRLLYETNDEKNSKPLEIARIHFKIKGSKEENDAILTNPYWGDAYRKYYERLLYILFIIPITTYVAFPFITYICKYQFPTTKFISKILSKISILDIDLEFLITLLIIIPFLLTGIFFYYKAKKYIYPFISIATEKFKNNPISWL
>NZ_CP007145.1|WP_052346110.1|675097_675427_+|hypothetical-protein
MALKTLLQNIEANAAALAAKGQQPQDTQQLQDLYDALVADTTSQGSQMSTQKGNTEENLTVLNALYEPMTHLFSDGKALYGRSDKAKAQDYTFRQLLKRVRRERKAEPA
>NZ_CP007145.1|WP_044000980.1|674122_674971_-|peptidase-M12
MRKQPFSVLALLTTVGTISLASCNKENETQPAQVEQAQDAKAEEAYPGQTGAAKAGTWGGESITYQEINGEKVYEGDILLTAEQVAASEGQNRPSSAGRTTGRWPSAVVYYTIDAALPSQSRVTSAISHWQANSPVRFVQRTTQSNYVTFRVGSGCSSNIGMVGGRQYINLASGCTTGNTIHEIGHALGLFHEQTRTDRDNYVNILTQNIQSGYEGNFTKYSALGYGGTDYGVLDFGSIMMYGSFSFSSNGQPTITKKDGSTFNIQRTGLSAGDKSGIDAMY
>NZ_CP007145.1|WP_044000979.1|673007_673904_-|glycoside-hydrolase-family-16-protein
MKKLLALFILFQTVQPSAQAQKPLRYRDWQLVFLDDFDTYRDIADMEARSPWQFTPDNYRTLVGNKIEDEYYDRRNAELHDGNLHLTARPLAEPMEYRYSIDGRDTMKLLHYESGWINLKPTFRPNPALGDTARWEGNRGFQYGLFEIRCKLGGGLGTWPAFWLSSGPTEIDIFEGGDPREVSNNIHFSSSTEPYRAKEFHYRYPGTPDLTQGFHTFSVIWTAEAVTYYLDRKWLRTVPAAEIPTYAAPTDIIANQAVTNYATPGLWPGLPDQRQSTLVIDYIKVYKQKAVLKPTANR
>NZ_CP007145.1|WP_052346111.1|689911_690265_+|hypothetical-protein
MTSSSETATLLLESFPELGAELQVPATRQSLYRQLSCFATFTREAAEAGQLALLKRCFEVADRLLRQGDAYLARAIENVYLHCLHLDGSTYGNQLARQLMPSRLYQTYHYPHTTMLP
>NZ_CP007145.1|WP_129922805.1|690400_690478_+|K(+)-transporting-ATPase-subunit-F
MVTLFFLSLATFGYLCYVLLRPEKF
>NZ_CP007145.1|WP_044000987.1|690568_692269_+|potassium-transporting-ATPase-subunit-KdpA
MNNELLSIGGIYLITLVLALPLGAYLARVFRGEKNLLDFMRPVENGIYRLSGIDARREMTWQQHMVALLTINLVWFLLAMLVLCTQGSLPLNPDGNPSMSPDLAFNTAISFLVNCNLQHYSGESGLSYLSQIVVITFLQFVSAATGIAAAVVVFNALQTRTTEKLGNFYDYFVKSLTRLLLPGSLLIALILAFNGTPMTLQGKQELISLQGDSVAVSRGPVAAMVAIKELGTNGGGFYGANSAHPLENPNFITNAVENIALVIIPIAMVFALGFYLKRRKLAYMIFGVMTVGFVALLAPTVYYEMHGNPAISKLGVDQALGAMEGKEIRLGAAASAYWSITNTIISCGSVNSMHDSFMPISGMSQMLGMMTNAFYGGCGVGLLNFFAYLIIAVFIAGLMVGRTPELLGKKIEAREMKIAVIVTLLHPLLILAGTALTAHLYAGNPTEYAGWLANPGYHGFSEILYEFTSASANNGSGFEGLGDNTPWWNISTGVVLLLARFLPIVGPVAIAGLLARKKYVPESAGTLPADTATFGVMVLAVIVIIAALAFFPALALGPLAEHFSLY
>NZ_CP007145.1|WP_044000988.1|692358_694407_+|potassium-transporting-ATPase-subunit-KdpB
MSTKSQSLFQPALVSEAVKQAFVKLDPRIMFRNPVMFTVEIGTVVMLLVTLGLLVKPDAAQGSFGYNFTVFVVLFLTLLFANFAEAIAEARGKAQAESLRKTREETPARVLDANGQESSVSSSQLQKGQIFLVEAGEIIPTDGEIIEGLATIDESAITGESAPVIREAGGDKSSVTGGTKVLSDRIKVVVTTAPGESFLDKMIALVEGASRQKTPNEIALTILLAGFTLVFVLVCVTLAPFAEYSNTPIAISAFIALFVCLIPTTIGGLLSAIGIAGMDRALRANVITKSGKAVETAGDIDVLLLDKTGTITIGNRKATHFWPAPGITEAQMVEAATLASLTDETPEGKSIVELAGETRRSDVAGLRTRLQGAELIKFTAETRSSGVTLPDGTRLRKGASDAIRQLAARANQPFPQETTQRVEAIASNGGTPLVVSQNDQVLGVVELQDIIKPGIQERFERLRKMGIKTVMVTGDNPLTAKFIAEKAGVDDFIAEAKPEDKMQYIRREQQQGKLVAMMGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDNDPTKLIEVVEIGKQLLMTRGTLTTFSIANDVAKYFAIVPALFMVAIPALGALNIMSLKSPQSAILSAVIFNAVIIPLLVPLALRGVAYKPIGASALLRRNLLVYGLGGVIVPFIGIKVIDLVVGLFL
>NZ_CP007145.1|WP_044000989.1|694605_695166_+|potassium-transporting-ATPase-subunit-KdpC
MKQNLLPAFRLTLVLLVVCCLIYPALVWAGAQLAPAGGQGETISHKGRVVGYDNVGQNFTRPEYFQGRPSAVDYNAAGSAGSNKGPSNPDYLATVQVRLDTFLVQNPGVTKAQVPAELLTASGSGLDPHLSPAAAAVQVGRVAKARNLDAAKVQALVTEHTQHSAFGPDRVNVLRLNAALDALQNR
>NZ_CP007145.1|WP_044000990.1|695552_696662_+|porin
MKPLVLFTATALLTASAAMAQTTPDSTAAAADPANPLTTYGFVDGYYGYDFKHAATNQRPGFLYSHNRQNEFTVNNAVIGLRYDNGQVRGALGLHAGTYVSANYAAEDQVLKHLYEAYAGFRPFQKAWLDVGIFGSHIGFESALSKDNWTLTRSLMAENSPYYEAGARLTYEVAPKLTLTGLVLNGWQNIRENNQAKALGTQIQWKPTDKLLINSSTFYGNEQPQDSVRRRRYFHDFYVSYAATDRLSLALVFDVGKQESEQRGGKADTWHTGAAFVRYKLADKWTAAARAEYYNADRGVIISTISPVAAATDFKVQAASLNLDYAPTSNVTFRVEGRTFHGRQPFLTDRNGNPTRNYGNLTSSIALSF
>NZ_CP007145.1|WP_044000991.1|696903_698079_+|histidine-kinase
MSTPANDDQQRDQSAERFLRLVQQRRRGRLKVYLGLAAGVGKTYRLLQEAHDLRAHGVDVVLGYVETHGRPGTVAQLRDLPTVPRKHIFYKGRMLEELDVQGILQRRPSVVVVDELAHTNVPGSENEKRWQDVEQLVRAGISVLTAVNIQHLESLHDQVLRITGTDVTERVPDQVLKQADEVVNVDLTVGELRARLEEGKIYDAAKVPTALQNFFQAENLLQLRQLAVRETANLISRQIETDGGGAAPVAPERRNQDRLLACINANAPAAREIIRKTSRLADRLSAASWAVLYVQTPRESADRINLATQRHLLNNLQLTTELGGQILRVKATDAVPEILRVAQEKGVTLLICGVTSEKSWWQRLLRPGVTRRLIRAVARSPLDVDVFLVSY
>NZ_CP007145.1|WP_044000992.1|698257_700006_+|HAMP-domain-containing-protein
MNLKTKITLAFVTMLLLLLGVSAFTLFSLNRLDRTARNVLQDNFYSVELGQRMLRALDSVQTAPPVALSSFREALTREAGNVTEVGEQAVVDSLTATLARYERLPQAATAARLRTLTYRMIDLNTQALTRKNEAANRTATQQQRYVLALLTFALLTSLLFVLSVPEAAVGGLRKLTASIENATNQDYSSSIPVESHDEFGTVARAFNRMLVQLQDYRTSTLAQLMAERNRAASIVNNLDEGLLLVDEHRRVLLVNPVAAELLGQPAAGLLGQPADEVARHNDLFRELLRHLDTPAAQRPQEAAPVLTLARNGEEVYYRVAVNDVISFNEALDKMEFVGSILTLHNVSEFKKLDQAKSNFLATVSHELKTPLSSINFSLKLLQNGKVGSVNEEQQRILATIKQENQRLLKLVGELIDVSRLESGNIQLNFQPTQVRDIVQFAADTIQLQLQPKQLTLDIQVPAELPPVRADIEKTTWVLLNLLANGIRYSPEQGQLHIRAALAAGGQQVEVLVQDHGPGIAPQYQEKIFQRFVQIPDKTGYRGGSGLGLSIAREFIGSQGGQLWVESELGSGSTFRFTLPVAG
>NZ_CP007145.1|WP_044000993.1|700140_700542_+|hypothetical-protein
MKLSLLAAAALLFTATAATAQISPSEPQRGGTLNQTTVQPQNPANPTTNPGNLDQRTPTSTNPTQTVPGTIDQRPTTSPMVTPGGVRRATQPTTAPSRTTTNGRRVRTVRGTSTTPMGTTPAGTTTPAGTIRP
>NZ_CP007145.1|WP_044000994.1|700618_700966_-|hypothetical-protein
MIFSDLLNATNHSLSNGLTGIPLSGAMDNTETWQQHLLQSGEPALQDIGRELGNLQSLLSAGDAGLDAQAIGRSLSMLGAQTAEIVRTAPDEVRSGLSSLSDTLLKAGGQLEQSR

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Crispr_ID: NZ_CP007145_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007145_2

1266699-1266806

Orphan

Consensus_repeat	Method
GTAGCGGTAGCCGCCGCCAGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007145_2

>merge|NZ_CP007145|2|1266699-1266806|CRISPRCasFinder
GTAGCGGTAGCCGCCGCCAGCTGCCCGGTAATAGCCGCCAGCTGGGCGTGGGTATCGTGCAGTTGTTGGGTGCTGGCCGTTTCTGTAGCGGTAGCCGCTGCCAGCTGC

>NZ_CP007145|2|2|1266699-1266806|CRISPRCasFinder
GTAGCGGTAGCCGCCGCCAGCTGC	CCGGTAATAGCCGCCAGCTGGGCGTGGGTATCGTGCAGTTGTTGGGTGCTGGCCGTTTCT
GTAGCGGTAGCCGCTGCCAGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007145.1\|WP_044001357.1\|1274653_1275451_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP007145.1\|WP_044001349.1\|1263606_1264686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001351.1\|1268332_1268917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_081768574.1\|1257474_1258293_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350160
NZ_CP007145.1\|WP_155832861.1\|1269825_1270577_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP007145.1\|WP_044001356.1\|1274309_1274546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_081768288.1\|1252501_1253836_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP007145.1\|WP_044001354.1\|1273256_1273751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001353.1\|1270924_1273234_+\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NZ_CP007145.1\|WP_044001348.1\|1262723_1263164_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001346.1\|1259796_1262163_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|372685
NZ_CP007145.1\|WP_081768289.1\|1256083_1257307_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP007145.1\|WP_081768290.1\|1269051_1269543_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP007145.1\|WP_052346200.1\|1275714_1276989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367210
NZ_CP007145.1\|WP_044001342.1\|1254024_1255782_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NZ_CP007145.1\|WP_044001355.1\|1273802_1274225_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP007145.1\|WP_044001347.1\|1262251_1262560_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP007145.1\|WP_044001359.1\|1277001_1278231_-\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP007145.1\|WP_044001345.1\|1258948_1259791_-\|DUF4249-domain-containing-protein	unknown	unknown	gnl\|CDD\|379442
NZ_CP007145.1\|WP_044001344.1\|1258369_1258822_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007145.1\|WP_044001353.1\|1270924_1273234_+\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_CP007145.1\|WP_081768574.1\|1257474_1258293_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	8.04911e-151
NZ_CP007145.1\|WP_155832861.1\|1269825_1270577_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.08012e-32
NZ_CP007145.1\|WP_081768288.1\|1252501_1253836_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP007145.1\|WP_052346200.1\|1275714_1276989_+\|hypothetical-protein	gnl\|CDD\|367210	pfam02836, Glyco_hydro_2_C, Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.	2.53208e-05
NZ_CP007145.1\|WP_044001357.1\|1274653_1275451_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.8287e-29
NZ_CP007145.1\|WP_044001346.1\|1259796_1262163_-\|TonB-dependent-receptor	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.90533e-22
NZ_CP007145.1\|WP_081768289.1\|1256083_1257307_+\|AhpC/TSA-family-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	4.05202e-22
NZ_CP007145.1\|WP_081768290.1\|1269051_1269543_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	1.6794e-14
NZ_CP007145.1\|WP_044001342.1\|1254024_1255782_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.66855e-129
NZ_CP007145.1\|WP_044001355.1\|1273802_1274225_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.53274e-06
NZ_CP007145.1\|WP_044001347.1\|1262251_1262560_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.49667e-39
NZ_CP007145.1\|WP_044001359.1\|1277001_1278231_-\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	1.21209e-129
NZ_CP007145.1\|WP_044001345.1\|1258948_1259791_-\|DUF4249-domain-containing-protein	gnl\|CDD\|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	1.00935e-34

>NZ_CP007145.1|WP_044001349.1|1263606_1264686_+|hypothetical-protein
MPAKHFIPFRQLRRQPAIVVDSTSLGASLTLAHWRGAATPEPLRDDTSAGSVLRALHHPDTPGLEAAAVTANHFDIDGFVGVWALLNPELARQHEPLLRLIATLGDFREIDWQNPLADHALRVVCWLNAEEKARFYEPFGAPARRRREEEASVEKFTWFLPRFAAVMTQPETVRAVWGPEYTRIKQGVAVMQSAATTVRQYPEIGLTVVRTPGPLPYYALFSPSIGADMVLSLYDGNRYEFEYKYTTWVDLESRPTLPRLALDALTRRLNELELPSRRWTFDGITDTGPLLRLSSKSLTKVQRYADPDQRPMYPSSISVEQLEQEIVAFFRAGYADIEPRRYWSWAEIREAGKRVLPTE
>NZ_CP007145.1|WP_044001348.1|1262723_1263164_-|hypothetical-protein
MRVSTPALSLRRLLQTAGLLLALVVFSPKQAQAQTWLVSTDAYVKIGVMDKFGQLGGFTAKFLVINQDTGKEYTLTKQVPKGQNGIDVVFPSEASEADYFKTERGEAGKAQPGRYTWECQVGGKKVVGGRFGFSEVANDVTLVGKN
>NZ_CP007145.1|WP_044001347.1|1262251_1262560_-|thioredoxin
MPKKSFSELISSPGMPVLVDFYADWCGPCKTMAPILEQVASQHQGKLKVIKIDVDRNQAAAQQFRVQSIPTLILFHKGQPVWRQAGVVSAAQISQVVQGVQG
>NZ_CP007145.1|WP_044001346.1|1259796_1262163_-|TonB-dependent-receptor
MTLRFTGLLLLGALGAGLPHSVQAQVRHTLTGTIRAAADGAPLPGATVAVPALGLGTSTDAAGAFSLTLPAGRHQLVISFIGYTTQTRDVNLTRNQRLSVPLASAGNELGEVVIEGTGTLEEKLRTPQMSVERLTAREAKLLPALFGEVDILKTLQLKPGVQNGGEGTSGLFVRGGSSDQNLVLVDDALVYNPSHLFGLFSVFNPDAVQSVDLYKGGFPAQYGGRLSSVIDVKMREGNREKLGVSGGLGLISSRLTVEGPLGKRAGKEPAKGSFLVSGRRTYFDVFTRQINRLSEDNPDYNPIPDYYFYDFNAKANYTLGPKDQVFLSGYYGRDKFGFNSQGGFDFGFSWGNSVAAARWNHVFNPRLYLNTTASFTDYQYQVSNKLDQFSFNLGSNIRDYSLRSDLDYTPNERHALKLGIQATHHDFGVGRLQAGSGDGSLNIGSTVGYTGIEGALYASDNFRPSEKWQLEYGLRLTGFRSGSNGYVGLEPRGAARYSLSPVTSLKASYALMYQYVHLVTNSGATLPTDIWYPSRLSVKPQRSQQVATGVSFLLGEGKYLLSNELYYKWSQNQVDFKDGAQLFVNPDLDSEFLFGKGWAYGSEVYLEKKTGRTTGWIGYTLSWSKRQFLPQRGTSGINNGRVFYPNYDRRHNLTVVVLHQLTERLNLTGSFVYTTGNATTLPAGRFAVQDIYGENLTAVPIYPDRNSYRLAPYNRLDLGLVWKMKPTKWFPESDLTFSVYNAYNRRNPYFVYFDQVRAGGEDTPVTSFRARQVSLFPVIPSVTYNFKF
>NZ_CP007145.1|WP_044001345.1|1258948_1259791_-|DUF4249-domain-containing-protein
MAANWLSFFRRLRWLLLLAPLASCDLEQDIDVDLPALPAQLAVECYLENGEIPRLTVTETVPYLASPEPVVPTDVTVRLTLANGQTETLRFFPGINPVTRKAYTHTGTRRLVARPGDTFRLEVTDTKGRRVTGTATMPARVPIDTLEYKFNDLPPERREAYVLTRFQDPVGVGNSYYLQIHRDSISDEAEIDYDVEDRLNDGTRFALGTSFRFDPGDTLLVTLYHLDRPFFLFRQSVQDARNANGNPFSQPSSIKSTVEGGVGVFTVLSYDRKQLIIPQP
>NZ_CP007145.1|WP_044001344.1|1258369_1258822_-|hypothetical-protein
MRNLFTRTVLFALFLATPAALTSCQDPIDCGCTPPPVEPVTSAALTRIATWWLNEASNAGQTTSTDAIKDRYSMQFKPDGTYTQTMLADGTTYAGAWMLMGTDNRILHLTDHKGAAQEYNVDGVNADKLVYRRAGKNNQSDIFSFGATRK
>NZ_CP007145.1|WP_081768574.1|1257474_1258293_+|purine-nucleoside-phosphorylase
MHQLQEAATYLRHTLQGFQPQAGIILGTGLGALVNDVEVLHRFSYADIPHFPISTVESHAGELLAGTLAGKRVLVMRGRFHYYEGYTMEQVVFPVRVMKLLGIERLFVSNASGGLNPDYDYSDLMLLEDHINLQPTNPLIGKNLDELGLRFPDMMEPYNQNLLRLAEEAAQELGLGQYLRRGVYASLPGPMLETPAEYRYLRTIGADAVGMSTVPEVIAAVHMGLPVLAVSVITDLCAPGKLKKVDIADILRTAAVAEPRLTALLRRVLEKL
>NZ_CP007145.1|WP_081768289.1|1256083_1257307_+|AhpC/TSA-family-protein
MRKYGIDRLLLLVVLLCGCQREQRQPKEYDYYILADVEGCAECQVRLAFNDFTTIKILDSTVYKNGRFALQGKITQPGFYYVWYNSRTDKTVSGAVQVYLPADSIHIEAAKNNVRNKFYRRPDMGSYLKNTVVFSDAPQQKELEQYLLMQDSLWHQFFTDKALVTAKFTQTFGSGNQALTEQWADSVRNFDYRVAGYWSSAADLFIQQHPASEVSLYALLENRNDRAAVERFRRYYQAMPAPVQASFYGRILDKQLARSESRNQNNQRFMGSYVGSLAGKSPVGEALNAGQLFKRNKLTLVTFWASWCGPCRMEMPKYRRLYQQYNRQGFGMIGVSLDTNHNNWLKAIAQDSLQMPHVSELKGINGEDIRRFEITGIPANLLVDDTGKIVAVDISFPKLQKQLQQAF
>NZ_CP007145.1|WP_044001342.1|1254024_1255782_+|signal-peptide-peptidase-SppA
MRQFFKYVLASFTGLVLFALIGVVLLIAIIAAAASSDKEVTVASNSVLELTLDKPIGEREFNNPLSGFTGGQSSSIGLDELKAAIRRAKEDDDIKGVFLNLELVQGGMASLEEVRQELVQFKKTGKFIVSYTDAQSEKSYYLASVADKLYLNPQGTLEFNGLSSETMYYKNLFDKLGVQAQIFRVGSFKSAVEPYFRTSMSDSARLQTSSFLNSLNNSMLAEVATARKITPARLKVISDSMLVHNADDAKRLGLVTDLGYYDQATDYMKGKLGLEKDAKLSLIDLSDYSKSDDEEGSTSGNRIAVVYADGDIVTGKGGNESIGSTRFAEAIRKARLDKNVKAVVLRINSPGGSSLASDIIYREVMLTKKVKPIIASMSDVAASGGYFIAMGCDTIVAHPTTITGSIGVFGVLPNIEPFLRDKIGITTDRVTTGKFSDFPTITRALSPFEQQQFQNEINRIYADFTTKAAQGRRMPVERLRRLASGRVWSGTEAKARGLVDVLGSMDDALRIAARRANLKEGDYRIQKLPRQKSFAESLFSSFNEEAKLRMVREEMGPMYPMYQQYKKLSEMKGAQMRLPFEVNVQ
>NZ_CP007145.1|WP_081768288.1|1252501_1253836_+|replication-associated-recombination-protein-A
MSTGSLFDSEPTSAPQPQGARPGAPLAERMRPRTLEEYAGQQHLIGPEGVLRRYLSAGRLPSLILWGPPGVGKTTLANLLAQELGKPFASLSAVNAGVKDVREVIERAKKQRGTVLFIDEIHRFSKSQQDALLGAVEQGIVTLIGATTENPSFEVIPAVLSRAQVYVLESLGKDILTSIVDNALAHDEQLRQKNVRMEEYGALLTISGGDARKLLNLLEIVVEASRPDPKTGAIVITDAVVQQLAQQHLARYDKGGEMHYDVISAFIKSIRGSDPNAALYYLAVMLEGGEDAKFIARRLLILASEDVGLANPNALILAQSCFQAVTVIGMPESDIILGQTVVYLATSPKSNASYKAIREARALVRQQGVQPVPIPLRNAPTQLMKELGYGNQYQYSHDYPGSFAYQEFMPEPLSGTVFYHPGQNPAEAKSQERLRQLWGEKYGY
>NZ_CP007145.1|WP_044001351.1|1268332_1268917_-|hypothetical-protein
MKKLLSALALLLTGCITCQQIVLLTEERSWLGSYTEGQQVTFRSNRGITATATVLKPQEWHTNTDCNWMESGRYQPIFSQIVLRPSTVYNEKNRDFVVNLRKNNPERPADVSFSVAGLECLSASKEGQITSKLQQQACTLSTTGKTYPAAYVFRQGQNATIYGSGQLQAFFWDKQDGLIRYELTNGEVFDLVSR
>NZ_CP007145.1|WP_081768290.1|1269051_1269543_+|nuclear-transport-factor-2-family-protein
MNRLPLATLLLLLTAACAPVRPAATVSVVAPPPVSPELYRTIARLDSAMFVAFNQHDVATLQTFFAEDLEFYHDKGGLANFQQTMQGFQRLFDQNKTTGLNRQLVPGTLEVYPINNYGAVETYQHRFCHVENGRDDCGTFKNMMVWRLRDGRWQVTRVVSYGH
>NZ_CP007145.1|WP_155832861.1|1269825_1270577_-|IS5-family-transposase
MRRYELKDADWARLAPLLPGKVGDAGRSAADNRLFVNAVLWIARSGAPWRDLPERFGPWNSVYRRFRRWAQTGVWQRVFEAVQDPDLDWAMLDSTSVRAHQHAAGPKKSSAPAEALGRSRGGFTSKLHVVVDALGNPLRLALTPGQQADCTIAADLLAGLRVGAVLADKAYDTNALVAQISRMGAAVIVPSKRSRRTARALDRNLYADRNKVERFFNRLKQYRRLATRYDKTASSFLAFAQCAATFLWLL
>NZ_CP007145.1|WP_044001353.1|1270924_1273234_+|glycoside-hydrolase-family-92-protein
MKLLPLAALLLASFTTFAQKAKPTENLVQYTKPLVGTARMGHTYPGATVPFGMVQLSPDTDTLSYEQNGKYNPRVYEYCAGYQYADPTIVGFSHTHFSGTGHSDLGDFLVMPTTGPLQLNPGTADQPERGFRSRFSHQNEVAEPAYYRVKLDDHNIVAELTASNRVGMHLYTFPQSEQAHIILDLTAGIYNYPDKNVWTFVRVENDSLVTGYRQTHGWARTRTEYFAMSFSKPFVSYGSRNLSKKQVYRGFWGRFDQTKNFPELAGEQLRLFFDFKTTAGEQVKVKMALSGVSTEGALRNMRAEVPGWDFEAVKRAGQALWQQELSKVVVESPKRTDKENFYTAMYHAALSPTTYMDVDGQYRGLDQNIHKAAGFTNYTSFSLWDTYRALHPLYNLLQAKRNADMVQSMLAHFDQSTMHMLPIWSHYANENWCMIGYHSVPVIVDAVLKGVVPADQAQRALNACVTTAHQQRYDGIGLYEQLGYVPEDKSGASVSKTLEYAYDDWCIAQLARKLGKTDIEAEFSKRAQNWQNVYDSRINFMRPRLADGSFRPRFDVLSTNDQGFIEGNAWNYSLYVPQDPAALIAKMGGEKKFLPHLDSLFTMHLPDKFFAETEDITRDGIIGNYVHGNEPAHHVAYLYNWTSQPYKTQARVRMILPKMYRPTPDGLGGNDDCGQMSAWYIFSALGFYPVAPGSPEYALGSPAVHGATINLENGNTFRITVKNQSDKNVYVKEARLNGQKLTRPFLQYADVVKGGELVFTMAARPSSFK
>NZ_CP007145.1|WP_044001354.1|1273256_1273751_+|hypothetical-protein
MITDKTRILAVLKAALAGAYYTRFTYYITAFECELFNDELGISAHIVFSEIELADRKEWKKWIETYPFNIENYNGPEEPTSVFLMGLLTQATIQSIEEENEGTLIIGFRNGMRVRLIGETEIEDISWNIEFRNSEDKDIGNCTCSFNEMFLTMGEELSTKLSLT
>NZ_CP007145.1|WP_044001355.1|1273802_1274225_+|VOC-family-protein
MNELQNETPNQPSTATPKVNGIGGIFFFSDNPQETRKWYANNLGLEVNDWGSTFESRNVERPEEVNSLQWSPFQKGSDYFAPSAKEFMINYRVQNIEGLVDKLKANGVTVLDDIASYDYGKFVHIMDADGNKIELWEPAS
>NZ_CP007145.1|WP_044001356.1|1274309_1274546_-|hypothetical-protein
MSIFGSDRPSGTLGGLLSGLFGGRKATNSSSDAYGTAPRFGGFNNKLLGGALLAAGAAYLYNRNKNKAASTPSFTGNE
>NZ_CP007145.1|WP_044001357.1|1274653_1275451_-|alpha/beta-hydrolase
MDIVRRHRVSSYGHGTRPIVFSHGFGTDQHAWQYVAPAFAARHQVVLFDLVGAGDSDAAAYDFTRYRTLDGYVDDLLTLLRTLQLPKVVYVGHSVSGMIGVLAAIREPELFERLVLLAASPCYVNDGDYSGGFDATDLEELLGFLDRDFRAWSNTMVPHLVGGDMRPELVDEVLAIFSRVDPAVARQFARATFLSDYRSCLPHLRVPSLIVQCADDSIVPAYVGKYLHDHLAGSTLNILNTTGHYPHLNAPVATIAAVERYLAQA
>NZ_CP007145.1|WP_052346200.1|1275714_1276989_+|hypothetical-protein
MRISVLLPLLALSTALYAQTKPIKVEVKQAGGRYELLRGGQPYFIEGAGGGQFPERIKAYGGNSIRTWGTNGADKVLADANRNGLTVMLGLDVARERHGFNYDDPAAVAAQLQKVRAEVLRYKDNPAVLFWGIGNELNLEYKNPKVWDAVEQIARMIHEVDPNHPTSTVLAGLNQPEVDYIKSRCPSVDILSINTYAGLAAIPQQVRTMGWTGPYVVAEWGPTGHWESPVTPWKASVEETSSQKAAVYQSRYEASVAKDTTQCLGTYVFLWGQKQERTPTWYGIFTEDGKESEVVDVMQYLWSGKWPANRAPHLVLFTLDGKQATGNVYLQPGKTYPVQATVTDPDKDPLTYRYELLPESTDLKSGGDQESRPAAVSGRLPANAKGQTTLTTPAREGAYRLFIYATDGHDNVATANIPFYVKGR
>NZ_CP007145.1|WP_044001359.1|1277001_1278231_-|exonuclease-subunit-SbcD
MRVLHTADWHLGQRFIQGNERTEEHRHFLEWLVQTVQEQQVEVLVVAGDIFDSGSPSNQALELYYSFLLNMRQTGCRDIVVVGGNHDSPATLNAPARLLRHLRVHVVGCVPECFEEQVLVLDDVHGKPGLVVCAIPFLRDRDVRLSVPGESAEEREARIKQGIADHYARVAEVEQVWQLKDLGLPVLATGHLYAAGVTPSDSERTIHVGNLGQVTADHFPEIFDYVALGHLHRPQRVGAREHIRYSGSPIALSFSEIDHPKEVLLLDFLAGKLTALRSLPVPAVRRLVRFHGTLEEVTQGLTTYDNTGYSLPAWADVQIHSELTQLEVAEALLKVIGELDRRQLEVLARRHFRLVKLRALGDTNEANEPLTRSLHDFTEREVFEQRLEAEPEESRAELLRTFDELLERL

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Crispr_ID: NZ_CP007145_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007145_3

1543474-1543570

Orphan

Consensus_repeat	Method
GCGAGATTCCTCGGCTTCGCTCGGAATGACGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007145_3

>merge|NZ_CP007145|3|1543474-1543570|CRISPRCasFinder
GCGAGATTCCTCGGCTTCGCTCGGAATGACGTTCTGGGGTGTGGTTACCACGCCAACGTCAGCACGCGAGATTCCTCGGCTGCGCTCGGAATGACGT

>NZ_CP007145|3|3|1543474-1543570|CRISPRCasFinder
GCGAGATTCCTCGGCTTCGCTCGGAATGACGT	TCTGGGGTGTGGTTACCACGCCAACGTCAGCAC
GCGAGATTCCTCGGCTGCGCTCGGAATGACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007145.1\|WP_044001526.1\|1553594_1554023_-\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NZ_CP007145.1\|WP_044001514.1\|1532206_1532662_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP007145.1\|WP_155832880.1\|1548221_1548395_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001518.1\|1539664_1539931_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_052346242.1\|1540709_1543259_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|200455
NZ_CP007145.1\|WP_044001520.1\|1540348_1540624_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_052346243.1\|1548552_1549713_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|377459
NZ_CP007145.1\|WP_044001527.1\|1554137_1554674_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NZ_CP007145.1\|WP_044001515.1\|1534254_1534995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001524.1\|1552692_1552902_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001517.1\|1537746_1539282_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP007145.1\|WP_044001525.1\|1553200_1553575_-\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NZ_CP007145.1\|WP_044001513.1\|1531726_1532119_-\|STAS/SEC14-domain-containing-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_052346241.1\|1532714_1534193_+\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271378
NZ_CP007145.1\|WP_044001519.1\|1539966_1540308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044001521.1\|1543618_1544452_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP007145.1\|WP_081768324.1\|1545200_1547426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372639
NZ_CP007145.1\|WP_044004317.1\|1547569_1548106_+\|putative-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183954
NZ_CP007145.1\|WP_044001516.1\|1535124_1537659_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
NZ_CP007145.1\|WP_044001523.1\|1550072_1550819_+\|acetoacetyl-CoA-reductase	unknown	unknown	gnl\|CDD\|273823

Protein	Function_ID	Function_description	E-value
NZ_CP007145.1\|WP_044001526.1\|1553594_1554023_-\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	2.02468e-11
NZ_CP007145.1\|WP_044001514.1\|1532206_1532662_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.57641e-67
NZ_CP007145.1\|WP_052346243.1\|1548552_1549713_+\|DUF692-family-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	4.26936e-29
NZ_CP007145.1\|WP_052346242.1\|1540709_1543259_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|200455	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP007145.1\|WP_052346241.1\|1532714_1534193_+\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271378	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This subfamily includes the putative allantoin transporter Escherichia coli YbbW (also known as GlxB2). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_CP007145.1\|WP_044001517.1\|1537746_1539282_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.12943e-125
NZ_CP007145.1\|WP_044001525.1\|1553200_1553575_-\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	4.29975e-11
NZ_CP007145.1\|WP_044001523.1\|1550072_1550819_+\|acetoacetyl-CoA-reductase	gnl\|CDD\|273823	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase. This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.	1.90371e-129
NZ_CP007145.1\|WP_044001527.1\|1554137_1554674_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	4.58845e-07
NZ_CP007145.1\|WP_044001521.1\|1543618_1544452_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.48218e-137
NZ_CP007145.1\|WP_081768324.1\|1545200_1547426_-\|hypothetical-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	2.59532e-19
NZ_CP007145.1\|WP_044004317.1\|1547569_1548106_+\|putative-metal-dependent-hydrolase	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	6.22928e-67
NZ_CP007145.1\|WP_044001516.1\|1535124_1537659_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0

>NZ_CP007145.1|WP_052346242.1|1540709_1543259_-|T9SS-type-A-sorting-domain-containing-protein
MKHLVLLVLLLSSFSTWAVPLTFRVDMRQQTVAATGLHVAGNFQAAAGFPADWNPSTTLLTDPDNDRVYEVTVNVPAGTYLYKFVNGNAWGGAELPPATCGVTDGSGNVNREVVVGGSAVRLPTLLLGGCNTQVRFAVNMRGQTVSRAGMHVIGNFQPLAGYGPEGDANALPLTDDNGDGIYEVQIALPAPIRFQYRFVNGSTPADAENVPAACGTPDASGTLTRVFEAMAATNPMPAVCFGTCQTCTPTLTDYTTHWWNDAVFYEVFVRSFYDSNGDGKGDFAGLTQKLDYLNDGNPATTTDLGVTGLWLMPMMASPSYHGYDVTDYKATESDYGTMAEFEAFLAAAHARGLKVIIDLVLNHASEQHPWFQQAASSPTNTYRDWFRWSATVPGTGPGNGTVWHPRNGNYYYGVFWSGMPDLNWRNPQLKAAMWDASRFWLRKGVDGYRLDAVKYLVENGNTIENTPETLGILEEFHDSVRAVNPAAFTVGEAWSNTPAVVPYVLNQRLDACFEFDLAAAIISSLNAGNPAALRTQLGVVDRSYPKLQYATFLTNHDQNRVLDQLGGNLARMKQAAALYLTMPGVPFLYYGEEVGMLGAGVDEDKRKPMQWTAGTQAGFTTGSPWRGLNGNYAQFNVATQQADPNSLLNHYKQLIRLRNTHEALRKGYLLPLTSPTNSVLSYARVHQQQAVLTVANMGSSANPALSLALSTLPAGVYRVTELLTGQAAGTVTLDAQGGFTNWSSSLTTLGPNQSWLLHLSPTQITATASRAAFTTNLYPNPATQQVTLELPTAVPAQLLVYSVQGQLLRTISLTGRRHTLDTGTWANGTYLLRIQSGAAVSVQRLVVAH
>NZ_CP007145.1|WP_044001520.1|1540348_1540624_+|hypothetical-protein
MDTDLQLSLANNAKEWLALSLSISSAEKVAFTKVHDGFFTTYGATFMAHVYRMTFEHALQSMPEQERSRLLITFREEMDKAIDDHYLSGGK
>NZ_CP007145.1|WP_044001519.1|1539966_1540308_+|hypothetical-protein
MTDSYLRSLGFADTDDSRSAARPAFGQAWRYLHEAPAQDGARLFIEHPLGIAGCRLSMLPAPLAASDIAATVGLHDRPALEAAITAFYAAHGGQAAVPAAAVPHTFLPYRRQR
>NZ_CP007145.1|WP_044001518.1|1539664_1539931_+|hypothetical-protein
MPSFYQPSAELLQAFGFTRFSSPAGQTRYSRPSECGQETVVLYPDEELALLEAVNGQLLYCFQGRVASEAEFRVLLRQVNWPAEVQSA
>NZ_CP007145.1|WP_044001517.1|1537746_1539282_-|SulP-family-inorganic-anion-transporter
MFQVLPYLAQYKINVKNEILAGLTTALALVPEVVAFALLAHISPLVGIGSAFVICLLTSVFGGRPGMISGAAGSVAVVIVALVAQHGVEYLFLAVALMGVIQIAVGLLRFGKFIRLVPQPVVYGFVNGLAVIIFMAQLEQFKVPGAGGEEQWLQGTQLLLMLGLVALTMAIVYLLPKLTKAVPASLVAIIAVSALVIGGGLDTKSVGDIASIKGGLPTLHWPQVPLNWATLALVLPYSVIMALVGLTESLLTLTVVDEMTDTRGHGNQDCVAQGLANVASGLTGGMGGCAMIGQTMVNLESRGRGRLSGVVAALALALFVVAGSSLIEQLPLAALVGVMFMVVIGTFEWASLRILRRMPRADVLVMLLVTLVTAVSQNLALAVLLGVVISALVFAWENAKRIRARKHTDAAGTRHYEIYGPLFFGSAQAFTDKFDVQQDPAQVVIDFRESRVADMSGIDALHKLTERYHRLGKTLHLRHLSPDCRQLLRNAGALIEVNIQEDPDYRVVTAE
>NZ_CP007145.1|WP_044001516.1|1535124_1537659_+|excinuclease-ABC-subunit-UvrA
MPDSPQPTTNFNGFVRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFHQMSVPQVQSIEGLPPAVALQQQRGTPTTRSSVGSVTTLSNLVRMLYSRAGDYPAGQGIVYAEAFSSNTPEGACPTCHGLGRVYEVTEQSMVPDPSLTIRERAIAAWPQAWGGQNQRDILVTLGYNVDIPWQDLPQQQRDWILFTEEQPVVPVYPGYSPEQTQRAVKRREPPNYMGTFSSARRHVLHTFATTQSPLMKKRALQYMLSQACPTCHGKRLRPESLSVTFAGLDIADFSALPLKRVEALIRPFAEGKARPQAHDQDHPEQAEVARRITQDLCARLMVLLDLGLGYLSLERSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPSDTQALLKALAGLRQAGNSLFVVEHNLDVIRQADWLVDVGPAAGELGGEILYSGPPSGLEAVDASHTRRFLYPVHGAAQARTVREPAGWLRLEGVHRNNLNGLYAQFPLGVLTTVTGVSGSGKSSLVSQVLVELVAAQLGQAVEAEEEAETDPLERAATTETGGQIVSGLETIKRLVRVDQKPIGRTPRSNMATYTGLFDHVRKLFAATPEARKRRYDAGRFSFNVAKGRCENCQGEGFVMVELLFLPSVYAPCSVCHGTRYNAKTLEIQYQGKNVAEVLHLTVDVAWEFFRDEAPVHRALTVLREVGLGYLRLGQPATELSGGEAQRIKLATELQRTGRGNSLYVLDEPTTGLHPADVERLLVQLQRLTDAGNTVIVVEHDMRVVAASDWVLDMGPGAGDEGGQVVAQGPPATVATAKNSKTASFLKRFMQ
>NZ_CP007145.1|WP_044001515.1|1534254_1534995_+|hypothetical-protein
MSNLLSVFPRIVLLAAVVFSLPHTLARAAGRTNSEKPTVNTSALAELRQAVGAVATVAPAKGAAAFQQASFRKRPLPEVSFGSSGVTVVWPNKRRVVFHNVHPHTVDDESKVITHRYGGTEPLTGLLWITKDRYEHTEQLLTSQANEKVTEVANEPQINRSGTLLFAKQNDCFVVSEDCHPGFQLWRITKGTLKLLKDVQLQNCFVVSGGWISATTVRIETASLQDMMSGKRVADMKRQFFDVTVR
>NZ_CP007145.1|WP_052346241.1|1532714_1534193_+|NCS1-family-nucleobase:cation-symporter-1
MTQTTTVADAPVSAGLTSADLAPVPAAARTWTTANYAALWISMSLCIPTYMLASSLIGGGMNWWQALLTIFLGNTVVLVPMLLNGHAGAKYGIPFPVFARASFGVRGANVPALLRAIIACGWFGIQTWIGGYALYQMAVLWVPALGQLPPVFPPSWGLATGPALVFVLFWALNMYVVYLGVDSIKKLLVFKAFFLPVAAGALLWWAIAAGNGLGPILSQPAKFASSAEFWAYFFPALTGMVGFWATLSLNIPDFTRYAVSQRAQVLGQALALPSSMTLFSFVGVVVTSATLVIYGQTIWDPVVLAAKFESRVLVSVAMLAVALSTLATNIAANIVSPANDFANLNPQRISFKTGGYITGVIGLLIFPWKLIADPSGYIFTWLVGYSALLGPIGGIMIADYYLLRHQQLDVPDLYRYEGRYTYQNGVNRRAVLALFVGILPNVPGFLQAVGAVPAGLVWSWLAGLYSYAWFVGFFLSAGLYVLLMRRPMRVVE
>NZ_CP007145.1|WP_044001514.1|1532206_1532662_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MLRWIDILTFARYGNPEPPQRLERPDAEWQQQLTPAQYQVMRRKATEPPYRNAYCRSYEPGRYHCVGCGSLLFDAATKYHAISGWPSFTQPAARNAIRYHFDDSHHMQRMEAMCNCCAAHLGHVFPDGPAPAGLRYCMNSVSMERRATGSL
>NZ_CP007145.1|WP_044001513.1|1531726_1532119_-|STAS/SEC14-domain-containing-protein
MEYLYDTPPLSISYDPDHQWLYVEWKGQHDAESARTGGELVLEYLRQRPCYKMLNDNSQVSSEWEKGARWVGTEYYRLLAQQGMRSVAWVCPAHWPARKSMEMAMWFVTQPTVLLFDDVAAAYAWLLRQV
>NZ_CP007145.1|WP_044001521.1|1543618_1544452_-|formyltetrahydrofolate-deformylase
MIHFLLIDCPDEPGLVYRVTEVLYRYGLNVLRNGEFVDRHDQHFFMRTEFDGPCEPKTLLQELRAALPPTARVRLRNDQPRRIVLLATKEHHCLSELLVRHFFGQLHAEILAVVSNHDTLRAITEKLGVPYHHLSAEGLSREAHEAALLTQIEYYQPEFVVLARYMRILSSEFVAHFPERLINIHHSFLPAFIGASPYAQAYERGVKSIGATAHFVTDQLDQGPIIAQSVIPTDHTQSARDMAQAGRDVEKLTLARALTLVFREQVAVHRNRTIVFE
>NZ_CP007145.1|WP_081768324.1|1545200_1547426_-|hypothetical-protein
MPLPLHPLRVLVCTVFLLLIYSCWRAPQARAQVLPRQWDRTLGNAGMNTLNRMRPTADGGYILGGQVDPTPSPDVSQPHHGVIDYWVIKLDAQGSKQWDRVLGGSSDEYVIDITQTADGGYIVGGWSRSGASGDKTQPSRGGIDYWVVKLDAQGRTQWEKTLGGSSNDYLTTITQTSDGGYLVGGDSSSPVSGDKSAPVGGPWLVKLDASGQKVWDRTLPGIKTGGLVALLPTTDSGYLLGGRIANTSPTGNLDFWVIKLSAAGQPQWELSVGGSDDDLLHALCATPDGGYVLGGISYSGASGTKSQGQRGQGDYWLVKLDALGTLQWERTLGGAGKDDLTSLYPDPDGGYLVGGYSESGVSGEKSQHSLGQADFWLVKINAAGQPLWDQRFGGSGLEVLKDAFPTSDGGYALGGSSTSDVSGDKTQPNRRLGFPNIWVLKLGVAPPEVSLPAVAAVCAGQQVTLTPLVKSITSPLTYQWSTGATTPTLLVSQPGTYSVTVSFPGGKTATAQRQVLPFAPALRITGDSVLCGGLPLTLQAQDAAAVAYRWSTGATTSTLTVTQSGTYSVTATYSGGCTATTTQTVRAALLLPAFTLGPDTTICQSQTLLLQAPPVAGATYRWFDGSTASTLLVKEPGDYSVQITTLCESVSMRRRVSVAPCLTIPNIITPNGDRVNEQFVIQGLTGNDWELAIYSRWGQRVYASSAYRNNWGPGAAPGAYYYTLRQTTTGLTYKGWLQVTR
>NZ_CP007145.1|WP_044004317.1|1547569_1548106_+|putative-metal-dependent-hydrolase
METPLIDRQYPIGKPELPTQPLTPAERADYIEQLAALPAQLTAAARQAGGAGLEQSYRPGGWSGRQVIHHVADVHLNFYLRYRLALTEDNPTIRAFDMNAWAALPDNDAVPVTVSLALLEALHSRWVTLLWHLTETEWQRTFYHPLYDRTYTLDQALVQYSWHGRHHLAHLGLLGEEG
>NZ_CP007145.1|WP_155832880.1|1548221_1548395_+|hypothetical-protein
MKIPQAVLGAVLVGLAVQTTGCSSKNDPKPKQTSEQEAKKSGEASKEPINCPACGLG
>NZ_CP007145.1|WP_052346243.1|1548552_1549713_+|DUF692-family-protein
MPTPTFPLPVEHPPVLATLACNLDADILAAAFPLLEAGRVAALEWSFDTLFAVEQVPEWFMALLRSYSTQGRLIGHGVYFSLLSGRWTAEQQQWLEQLRQLSAQVAFDHVTEHFGFFTGENFHSGAPLPIPYTSSTLRLGQDRLRRVQAACGCPVGLENLAFAYSLAEVQRHGEFLAKLVAPVNGFLILDLHNVYCQLHNFSLSTESLLSAFPLELVREIHISGGSWQPSGQVPGRQIRRDTHDEAVPEEVFQLLEYALPLCPNLKFVVLEQLGNALHTEASRTRFRADFSRMETLVQQRPQRPQNPIYQSFLPGPAGPLTAAAAEDEQLHTQQRHLAHILETATSFAEARHQLRASPLAHTAWKIEDWEPHMLETAISIAQKWKQ
>NZ_CP007145.1|WP_044001523.1|1550072_1550819_+|acetoacetyl-CoA-reductase
MKQNNERIALITGSTGGIGTALCRKLSEDGYRVVGNFRNEEKSVQLQQELDKTGHHIELVHGDVSDFDSVGAMVQHIETNIGPIDILINNAGITRDTSFVKMTKGQWDEVLNTNLNSVFNCTRHVIQGMVERRFGRIINISSINAQKGQYGQTNYSTAKAGMHGFTKSLALEVAKYGITVNTISPGYIETEMVMAVPENIREKIIAQIPVGRLGGPTEIAEAVSFLISAKSGFITGSNFAINGGQHMA
>NZ_CP007145.1|WP_044001524.1|1552692_1552902_+|hypothetical-protein
MARIEAVAAAQDHYTASTLTALPEAGPGLAVKNKAEVHLPDYSKLGPADAPYLLVVQKQLDGEGRWVVR
>NZ_CP007145.1|WP_044001525.1|1553200_1553575_-|DUF3592-domain-containing-protein
MPALIMETILPLLAGASLFLWGLWLWRQRQRLVRTGQFVLGTIVGHDDGPIIQFHTQDQQPITAKPSASPSRRRHLNGASVGLYYNPDNPQEVVLDTTEHKFLPWLFMGMGAVFLMSSILFKGG
>NZ_CP007145.1|WP_044001526.1|1553594_1554023_-|DUF3592-domain-containing-protein
MDKLFFLLFAVIVVGMAFALYKNSHSRLHILRRGKRVPGEIVDLEFFDLFHRFPVVRFRTSSGQLLTLTASDKTHISEFRKGQQVEVCYLPAALDQFVIVSGLDALVKSETEVAKGPYRLKKGQERRANPKGKPDRRTRQPE
>NZ_CP007145.1|WP_044001527.1|1554137_1554674_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MGKHYPAISADIQVFIEQQHVFFVGTAAADGRVNISPKGQDTLRVLDANRVAWLNLTGSGNETAAHLLALNRITLMWCAFEGRPNILRLYGTATTYHPRDAEWTTLLPLFPPLPGARQILVVDVDLVQTSCGMAVPFLDFRAERDELNDSMEKRGPEQVAQYWHTRNTRSLDGKPTGI

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Crispr_ID: NZ_CP007145_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007145_4

1748579-1748672

Orphan

Consensus_repeat	Method
AGAGACGCAAAATATTGCGTCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007145_4

>merge|NZ_CP007145|4|1748579-1748672|CRISPRCasFinder
AGAGACGCAAAATATTGCGTCTCATCGTTGCTGACGTTGTTCGAACCGTGCCTTGCCGCATCGTTCAACGACGAGACGCAAAATATTGCGTCTC

>NZ_CP007145|4|4|1748579-1748672|CRISPRCasFinder
AGAGACGCAAAATATTGCGTCTC	ATCGTTGCTGACGTTGTTCGAACCGTGCCTTGCCGCATCGTTCAACGA
CGAGACGCAAAATATTGCGTCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007145.1\|WP_044001634.1\|1727693_1731143_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_CP007145.1\|WP_044001635.1\|1732005_1732449_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NZ_CP007145.1\|WP_044001639.1\|1734447_1736991_+\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
NZ_CP007145.1\|WP_044001636.1\|1732548_1733889_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349874
NZ_CP007145.1\|WP_044001646.1\|1750146_1750917_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|188170
NZ_CP007145.1\|WP_044001644.1\|1746944_1748567_+\|glycosyl-hydrolase-43-family-protein	unknown	unknown	gnl\|CDD\|350115
NZ_CP007145.1\|WP_044001651.1\|1759744_1761268_+\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NZ_CP007145.1\|WP_044001643.1\|1744723_1746652_+\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|369381
NZ_CP007145.1\|WP_044001641.1\|1742203_1744540_+\|lipase	unknown	unknown	gnl\|CDD\|238859
NZ_CP007145.1\|WP_155833114.1\|1758768_1759734_+\|pectate-lyase	unknown	unknown	gnl\|CDD\|312856
NZ_CP007145.1\|WP_044001650.1\|1757231_1757540_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP007145.1\|WP_044001640.1\|1737486_1740453_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP007145.1\|WP_044001653.1\|1763301_1764732_+\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
NZ_CP007145.1\|WP_044001647.1\|1751050_1751881_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP007145.1\|WP_044001645.1\|1748800_1749829_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP007145.1\|WP_044001649.1\|1755215_1757057_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP007145.1\|WP_044001648.1\|1751935_1755187_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP007145.1\|WP_052346274.1\|1731197_1731929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044004379.1\|1740486_1742142_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_CP007145.1\|WP_044001652.1\|1761423_1763079_+\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287

Protein	Function_ID	Function_description	E-value
NZ_CP007145.1\|WP_044001634.1\|1727693_1731143_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_CP007145.1\|WP_044001635.1\|1732005_1732449_-\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	8.49735e-20
NZ_CP007145.1\|WP_044001639.1\|1734447_1736991_+\|type-IA-DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP007145.1\|WP_044001636.1\|1732548_1733889_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349874	cd03877, M28_like, M28 Zn-peptidase, many containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	1.51011e-59
NZ_CP007145.1\|WP_044001646.1\|1750146_1750917_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|188170	TIGR01832, 2-dehydro-3-deoxy-D-gluconate_5-dehydrogenase, 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	1.34485e-109
NZ_CP007145.1\|WP_044001644.1\|1746944_1748567_+\|glycosyl-hydrolase-43-family-protein	gnl\|CDD\|350115	cd09001, GH43_FsAxh1-like, Glycosyl hydrolase family 43 such as Fibrobacter succinogenes subsp. succinogenes S85 arabinoxylan alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been annotated as having beta-1,4-xylosidase (beta-D-xylosidase; xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. This subfamily includes the characterized Clostridium stercorarium F-9 beta-xylosidase Xyl43B. It also includes Humicola insolens AXHd3 (HiAXHd3), a GH43 arabinofuranosidase (EC 3.2.1.55) that hydrolyzes O3-linked arabinose of doubly substituted xylans, a feature of the polysaccharide that is recalcitrant to degradation. It possesses an additional C-terminal beta-sandwich domain such that the interface between the domains comprises a xylan binding cleft that houses the active site pocket. The HiAXHd3 active site is tuned to hydrolyze arabinofuranosyl or xylosyl linkages, and the topology of the distal regions of the substrate binding surface confers specificity. It also includes Fibrobacter succinogenes subsp. succinogenes S85 arabinoxylan alpha-L-arabinofuranosidase (Axh1;Fisuc_1769;FSU_2269), Paenibacillus sp. E18 alpha-L-arabinofuranosidase (Abf43A), Bifidobacterium adolescentis ATCC 15703 double substituted xylan alpha-1,3-L-specific arabinofuranosidase d3 (AXHd3;AXH-d3;BaAXH-d3;BAD_0301;E-AFAM2), and Chrysosporium lucknowense C1 arabinoxylan hydrolase / double substituted xylan alpha-1,3-L-arabinofuranosidase (Abn7;AXHd). A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	5.5178e-132
NZ_CP007145.1\|WP_044001651.1\|1759744_1761268_+\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NZ_CP007145.1\|WP_044001643.1\|1744723_1746652_+\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|369381	pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.	2.34304e-103
NZ_CP007145.1\|WP_044001641.1\|1742203_1744540_+\|lipase	gnl\|CDD\|238859	cd01821, Rhamnogalacturan_acetylesterase_like, Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.	2.24954e-87
NZ_CP007145.1\|WP_044001650.1\|1757231_1757540_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.19603e-43
NZ_CP007145.1\|WP_044001640.1\|1737486_1740453_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP007145.1\|WP_044001653.1\|1763301_1764732_+\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
NZ_CP007145.1\|WP_044001647.1\|1751050_1751881_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP007145.1\|WP_044001645.1\|1748800_1749829_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.45898e-113
NZ_CP007145.1\|WP_044001649.1\|1755215_1757057_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	1.02093e-25
NZ_CP007145.1\|WP_044001648.1\|1751935_1755187_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP007145.1\|WP_155833114.1\|1758768_1759734_+\|pectate-lyase	gnl\|CDD\|312856	pfam09492, Pec_lyase, Pectic acid lyase. Members of this family are isozymes of pectate lyase (EC:4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.	3.03498e-127
NZ_CP007145.1\|WP_044004379.1\|1740486_1742142_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	6.19941e-38
NZ_CP007145.1\|WP_044001652.1\|1761423_1763079_+\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0

>NZ_CP007145.1|WP_044001644.1|1746944_1748567_+|glycosyl-hydrolase-43-family-protein
MKFRLFLLAFLLPLATRAQSTISQVWVADLGNGSYKNPVLYADYSDPDVVRVGPDYYLTSSSFNSAPGLQILHSRDLVNWTIIGAAFSQQLPLARYNQAQHGNGVWAPAIRYHKKEFYIYYPDPDLGLFVTKAKNPAGPWSTPICIKEARGWIDPCPLWDEDGQAYLVHGFAGSRAGFKSVLAVSRMSPDGLRLLGDEVLVFDGHDQHPTIEGPKFYKRHGYYYIFAPGGGVSTGWQVVLRSKNVFGPYEDRIVMNQGKTPINGPHQGAWVDTPDGKQDWFLHFQDQGPYGRVVHLQPMQWRNDWPIIGEDPDGDGMGQPVLTHRKPAVRGPQPLATPATSDEFSSAALGLQWQWHANPQPGWAFLNQSTGTLRVYSVPLPEGTRNLWPVPNLLLQKLPAEQFTATAKLTVTPRIEGEKVGLVMMGLDYATLTLTNTGGQLQLSQTVCKEADKLSPEVAGAPVSVPVRQPVYLRVAMQPGAKCQFSYSLDGRAFTPLGTVFQAREGKWIGAKMGLFYTRPSQTNDAGTADVDWFRVEAVK
>NZ_CP007145.1|WP_044001643.1|1744723_1746652_+|glycoside-hydrolase-family-88-protein
MSFRSFLFAGLFTASLSTQAQTAPAARPMSQRMADAFISWHPDSILIGNRKTARWDYEQGLMLKALERVWQRTGDARYFTYIQKDLDQFVRPDGSIRTYKLEDYNLDNLTTGHALLTLGQMSVPQAEKYRLAAQQLRKQLEGQPRTKAGGFWHKKVYPNQMWLDGLYMAEPFYAEYSQAFNQPAGFDDVAKQFALIEKNLTDPKTGLMYHGYDESREQQWANKTTGQSANFWDRGLGWYAMALVDVLDYFPQHHPQRQQLIQNVQRLAPVLVKYQDATAGTWALVMDQAARKGNYQEASGSSMFVYFLQKGVRMGYLDKKYAAAARRGYDGLLKQFVAEENGTLAFNGTVSVGGLGGKPYRDGSFEYYLTEPLRKNDLKGVGPFILASVEMETAASTVGTGKTVAVDNYFNHELRKNALTGQPETWHYTWDDRTHGGFYFWGQQFRDLGAKTATISTAPTAAALKGVDVFIIVDPDTRKETPQPNFVQPADVQVFTKWVKDGGTLVLMANDTSNCEIPRFNTLARAFGMEFLPLNLNMVKGSEFEQGRVTIPAGNAVFKTAKSAYIKELAPLKVQASATPLVKMGEHTVIATAKVGKGTVLAVGDPWLYNEYVDGRKIPASFENYNAAHDLATWLLQQSGRK
>NZ_CP007145.1|WP_044001641.1|1742203_1744540_+|lipase
MKQLAILFFAVLLWAFRPADDKKPTIFLVGDSTMSDKPLDKAERGWGMYFRQYFNASVTLQNHAMNGRSTRNFRHEGRWAKVLEQLKPGDWVFIQFGHNDSKQEDTARYAAPQTAYRQNLTRYVQEARAKGANPVLLTPVGRRYFDEAGKRKDDHGEYPGVVREVAKAQKVPLIDAHEATWAMYTQLGDAGTKPLFWSYQNGANNTKLDNTHFSAYGAERVAQLVAQEVKKQNLGIATHLKPLAFAGKYAYELPIVLQPTFRKDTFDITKYGAVADGQTLNTEAFRKAIDACSQQGGVVLVPRGLWLTGPIQLKSNVNLHVAKGALVQFSNRLSDFQLVKTNWEGEDAVRNQSPISGFDLENIAITGPGTFDGAGDAWRMVKKEKLNAGQWQRLVKSGGVVDEKGTTWYPSAGSLKGSTLNKPWTLTAGQEPDFSKYAEFKDFLRPNMLSLQRCKQILLEDFTIQNSPAWTIHPLLCDNITLRNVTARNPWYGQNTDALDLESCRNGLVEGCTFDVGDDGICIKSGRDAEGRRRGVPTENFIIRDTKVYHAHGGFVIGSEMSGGARNLYVSNCTFMGTDVGLRFKTARGRGGVVENIFVDGVDMTDIAGEAILFDMYYAAKDPVQVNGEAYGIPEIKAEPMNEGTPQFRNFRITNVTCKGANTGILVRGLPEMAVQNIEIENTVLECNKGLVCQEADGIRLKNVTLLSQETKPVLEVQNSRNISFDNLRYTPGAELLLRVTGARSKAVTLRNTDTKPAKKGVEMGEKVAKKTVTVSKL
>NZ_CP007145.1|WP_044004379.1|1740486_1742142_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKFPTHRPLRLLLAAGALTLTLPACEKQLEEYNPSGLTAEAVYKTPAGFETLVNAAYSYNRWWYGKENGYSASEMGTDLWQRGAGDVNPDLTEYTTLQGSSTALTELWNKLYAGVNVCNAGIGRIGSSGMTDALKKTREGELRFLRAFYYWQIVETWGGVHFTTEEATSVQNTANRTPVDTFYKQIFDDLTVAVANLPATTTDYGRVTKPAAEAFLAKMYLTRGQNRQAADLAQKVISSYGYALQPRFADLWSMTNLENKEIVWAVNYSRDLSLNDRVDATLYPDGHPRGANNGHLLFLMKYDDQPGVIRDIPYGRPFNRFMPSLFYLNLFNEKVDSRYAATFQTVWFANRAVTNIAVGDTAIVASKYIIPAATKAKRKYRIWDQSAVYSPTGAVTGDRIHYMTMKKFLDPTRPTIAEEQSARDAYVIRLADVYLTAAEAEFKAGNATKAAELINVVRRRAAILGREADMLITPADVTLDFILDERGRELGGEQLRWFDLKRTGKLLERVKKYNPDAANTIQEFHLVRPIPQRQLDAVSNKGEFTQNAGYR
>NZ_CP007145.1|WP_044001640.1|1737486_1740453_+|TonB-dependent-receptor
MKKSLLLSSLVLLTAGTALAQQTRPVQGRVLDAATGEALPGVTVIIKNTTIGATTDNDGSFSLSVPAGTEAVLTFSYIGYVPQTVPAGNLDKLKVSLKPDQKALDEVVVIGYGQVKKSDVTGAIVSVKEEDLKKVPSANVMETLQGRLPGVDITRSSGSAGSGVNIAVRGNRSITAQNGPLFIVDGVQYNSIQDINPNDIQSMEVLKDAASTAIYGSRGANGVIIVTTKKGTSGQPRVTVNSYYGITDAVYYPRVNDAAAYVAQKREANRTTGTWTDVSNDSKIFTPLEIQNINNGVSTNWMDMLLRQGVQQEHQIGLAGGSDKTKFYTSFDYFNEQGLFRMDDLNRYSIRFNLDQKINAKVKVGLQSQLTYFNLDRRRDPTNQANKINPLLTPYEENGNLAIFPNAGNFINPLIDEQPGNYQNNQRTTRTFTTAYASYQILPSLSLRSNLGLTLSNARTGIYQGSNTLDRNGSVAQSAYGTEFVTNWSWENILNFNKTFGDHTVTATGITSLLTFNNESSNAQGRNQLLDYQGYYALANANQQVGINSGYVNSKLISFTGRVQYNFKSRYLLTLTGRSDGSSVLAPGNKWAFFPSVAAAWRIIEEDFMKGVTPVTDLKLRVSYGRAGNYDIPAYSTQSLLVRIPFGFGETSSPAYTFANRIGNKALGWELSNTLNFGLDFGLLQNRLTGTVDVYDTRTSNLLLNRVLPATSGYSVVTENAGKTRNRGIEVGLNALVMEKESFRWNAGLTWFKNKEEITALTISGNDVSNRWFIGSPVNVFYDYEKLGIWQTSEADEARSFGQKPGQIKVRDLNGDGRITATDDRKVLGTTVPKWSGSFNTDFSYKGFDLSVQLFARIGQMLNYEYNGFFDPQGIENSSRQNYWTPENPSNDFPRPDASLSKTTLQNALYGTTLLYEDGSYAKLRAATFGYTFPAGLASRLHMSSLRVYVQGKNLYTWSHIDNYDPERGGAINTPIPRVLTAGLNLGF
>NZ_CP007145.1|WP_044001639.1|1734447_1736991_+|type-IA-DNA-topoisomerase
MKVCIAEKPSVAREIAQVLGANRKMDGYFEGNGYQVTWTFGHFCQLREPEDYRPEWKRWSIHDLPMLPEQFGIKLMRRDDGVVRQFNVIKNLLASAEEVINCGDAGQEGEVIQRWVLLEAKYRKPTKRLWISSLTEEAIRQGFQNLREGSEFDSLYQAGKSRAVGDWLLGLNATRLFTLKYAPGQRQVLSIGRVQTPTLALLVDRHHEIQNFRPEPYWVLRTEYRGTMFSHVAVVKKGKDDDEPDEKARLKARGYFVTQEEADAALAQVTGQPLTVTNVEIKKALESPPALFDLTSLQVQCNNQLGLSAEDTLKTVQGLYEKKVVSYPRVDTTYLPDDQYPKIPGILRGLGGAHAALAAPLLAGGKIRKSTKVFNNQKVTDHHAIIPTGASAGSLHGTEQQVYDIITRRFLAAFYPDCEVSNTTVTADVAGRTFRVRGRQILSPGWREVYGDPEKQQAPSAPKAAGEGDDDVVSTVLPSFQKDETGPHKPRLDAKQTQPPREYTEAMLLRGMETAGRNVDDDELRQAMKENGIGRPSTRAAIIETLFKRGYIRRDRKKIVPTPTGVELIGLIRNPTLKSAELTGQWERKLRQIEGGQLDQEQFLGELKQLVREMVHEVKHDGSGRAVTVANAAQAAPAAGKPAATRPTPAAATPAVPGALGPCPACGSGHILRGKSAFGCSRWKEGCQFRLPVEFEGKKFTDKQVGDLLKKGRTQVMQGFLDEVGNKFGAAIRLTPARTLELVRAAESKPTTPQDPGQIPCPVCRLGQMLKGKSAWGCSRFREDCQFRAPFEWGGKTLTDAQMNQLLRKGKTGVIRGFISSKSGARYEAALQVGADGRIEPVFDNKG
>NZ_CP007145.1|WP_044001636.1|1732548_1733889_+|M20/M25/M40-family-metallo-hydrolase
MRKFPPFVLFLALFSANVYAQKKPAIAPLTAGVSAATVERIVRTLAADDMQGRATGKPGSLKAAEFLAAEFQRIGLEPLPGLTSFAQTFPAYEARTAAAFVSINGSNVSPDKLLLISGQPHLNWTEADEPAARVVTIGPKDNLMKDVRALLDPKENTIVFVDPTQAAAFARVAGYVKRGGLRADKPAPFTTLLILAPPAPTPLKFQVAATTTIRTVELRNVVGVLPGKDAARATEQVVFSGHYDHLGFLPAVVGDSIANGADDDASGTTAVVALAEYFKKKNDNARPLVFVAFTAEEIGGFGARHFSKQLNPQQVVAMFNIEMIGKQAKFGPNTAFITGFDRSDFGKMLQDNAKGTVFRFEPDPYPEQNLFFRSDNATLARLGVPAHTISTDQIPTDKKYHSVDDEVESLDLPNMTAVITAIGRAAVGIVSGQQTPTRIAPETVKQ
>NZ_CP007145.1|WP_044001635.1|1732005_1732449_-|META-domain-containing-protein
MRLSLPLLLLLGACQTTAPTTETTTSAAPATPPAELRGTRWLLHALDKQPTTPTAGKEVYLQLNTTELQAEGQAGCNRFRGNIELPATGQLRFGPLMATKMACPDLTIETGFMSALNAARTYRISRDTLRLYGEPAGLPLAELHKGQ
>NZ_CP007145.1|WP_052346274.1|1731197_1731929_+|hypothetical-protein
MMRIYFASVFLLAVCATSGQAQQSISQAGTAAQANIDALANGAAAVLPKGESYGLIGSPYVENSWLPARLKMTTGVPLAPVPVKYDVLNHRLLMLPLHRKDSLVLDDRKLASFELDVPARGLQPARVRRFRRFTEAPVLSQRAEYVEVLHEGKYAFLKRYAKTLRKANYQGPYSTGERYDEVEDKITYYLLRPDGQLLPVKLGLKPLQAAAPALAAALKATPEAATAKTDADWGAVLAKVDTQ
>NZ_CP007145.1|WP_044001634.1|1727693_1731143_+|pyruvate-carboxylase
MNIRKLLVANRGEIAIRVLRAATELGIQTVAIYTYEDRYSLHRYKADEAYQVGRDDEPLKPYLDIEGIIRTAKANGVDAIHPGYGFLSENATLARRCGEEGIIFVGPRPEVMDALGDKVAAKRVAVACQVPIIESSERDLTDLDVALEEAHRIGYPLMLKAASGGGGRGMRVIRDDEQLERGFFEARNEALKAFGDDTVFLEKFVEQPKHIEVQLVADNHGGLTHLYERDCSVQRRYQKVVEVAPSLNLPDHLRHLLYEYALRLGRAVNYNNVGTVEFLVNPEQDRIYFIEVNPRIQVEHTVTEMITGIDLIKTQLHIADGRRLQDPEIGLGPDVTPLKIGVAIQCRITTEDPEQDFKPDYGTITAYRSAGGFGIRLDQGSVYTGVKVSPFFDSLLVKVSTHAPSLAEAATKMARTLDEFRLRGVSTNIQFLQNIIAHPVFMAGEANVDFIKDHPELFRFKRRQDRATRVLSFLGDVIVNGNPDVRGLLDPKRELRKARLPEADLAAAPPAGTKQKLTELGPDCFAQWLRAEKQVHYTDTTLRDAHQSLLATRMRTFDMLKVAERYARQHPQTFSLECWGGATFDVALRFLHEDPWERLAKLRAAVPNILLQMLIRGANGVGYKAYPDNLTEQFVQQAAETGIDVFRIFDSLNWMPGMEACIGFVRNKTDRLAEASICYTGDILDPKRNQKYNLDYYLRLARQIEDAGAHILCIKDMAGLLKPYAATELISALRATVSLPIHLHTHDTSSLQAATYLKAVEAGVDVLDVALGSLSGLTSQPNFNSVVEMLRGQERHREFDQKSLNEFSNYWETVREYYYPFESGLKAGTSEVFQHEIPGGQYSNLRPQAASLGLLDKFETVKTTFADVNLLFGDIVKVTPSSKVVGDMALFLVSNNLTTHDVLEKGAGLNFPESVRELFRGDIGQPEGGWPAELQKLILKDEQPFTDRPNEHLAPIDFAAEEQRFEEKFGRAGKFTDVLSWLLYPKVFEQYWQFREDHGDVAVVPTPVFYYGLQPGEETIIDIARGKSIIVGLQSIGPVNEDGCRTIFFNLNGQTRNLEIRDTSVEVKCIFNLKADKGNPRQLGAPLQGMLSRVLVESGQQVRKNEPLFIIEAMKMETTITAPDDTTIQAVSLTEGSMVNADDLVLTLG
>NZ_CP007145.1|WP_044001645.1|1748800_1749829_-|LacI-family-transcriptional-regulator
MEVYTIKDIARELGISTSTVSRALRGSYEINPETKRLVMECAERLNYRPNPIALSLKGSASRAIGVILPQVANYFFSQAINGIEAIAYNRGYHVIIFQSQESYEREMANVQQAMSRKVDGLLMSLSSETSDVTHLQDVLDKNVPLVLFDRVSSELNVTKVVADNFGGAFAATEHLIRSGRRRIAHLTIQPWLSITQERLAGYRAALEQNGLEFDETLIRYGTFGPDEVGPMVDELMHLESPPDAFFTASDRLAVGCLQALRQRNLHIPDDVSLIGFTNLNVADLLDPPLSTVVQPAQEIGQVAAERLIDQIERKLRALPIETVQIATELIVRSSTRLEAVKL
>NZ_CP007145.1|WP_044001646.1|1750146_1750917_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MSLAASFDLTGKVALVTGCNRGIGQAMALGLAEAGADIIGVSATLALEGSDTAQQVQALGRQFHAYQADFSRRAAVDAFLEQVQQDFPRIDILINNAGTIRRAPAAEHADADWDNVLAINLDAPFRLARAIGGRMLAQGSGKIIFTASLLTFQGGINVPGYAASKGAIGSLVKALANEWAGRGVNVNAIAPGYIATDNTEALRQDLERSSSILGRIPAGRWGQPDDFKGPTVFLASEAASYVHGTILTVDGGWMGR
>NZ_CP007145.1|WP_044001647.1|1751050_1751881_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MRQYYAIGPRETAAMNTAELRENFLLENLFVAGDIQLVYTHYDRMMVGGVVPTAAPIALPNPANLKADFFLQRRELGILNIGAAGTVTVDGTAYELGRQDCLYVGRGAREVVFASLESATPAKFYLLSTPAHASCPTTRLTQAEATPVTMGALETANQRTIYKYIYSEGIQSCQLVMGLTQLHAGSVWNTMPAHTHDRRMEAYLYFDLPEGQRVLHLMGQPQETRHLWVGEGQAILSPPWSIHSGCGTAGYTFIWGMGGENQEYTDMDPAPIAELR
>NZ_CP007145.1|WP_044001648.1|1751935_1755187_+|TonB-dependent-receptor
MKKNLLLLAPLLAAVAAPAWAQERRVQGVVKSDKGEALPGVTVVVKGTTAGASTDGEGRFSLAVPANATLRFSYIGFLPFEVAVGDRTDFSVALKEDSKTLDDVVVIGYQAVQRRDVTGSVSSVSAQQIKDIPVNSAAEALTGRLAGVQLTSSEGTPGNQDVRVRVRGGGSITQDNSPLYIVDGIQIENALSVIAPQDIASVDVLKDASATAIYGARGANGVVIITTKKGIEGKTVISYNGFAGFRRISKKLGVLKPDDYLNYQFERAQQAGAAGQGGLSTFAKLFGSRNYMSDTLTRARQAPFIDWQDEIFGRDAFQQTHNLSVAGGVKGTTYSLSLTHNDEDGIQRGSDYTRNLVNFRFDTKATEKLRVGLNLRFNDQITNGAGTSTSGSSVTSRLRNTVQYMPLSVPNSSGVVVDPNTFDDDFFTNSSLVNPLITIDSEYRRDKRRTFNIGGNVGLELMKGLTFRSTAGIDITNFDLSTFNGRFSPTIRQAAGGYLNLPFATITTANQLTFNNSNVLDYSLATGKHQIGVLLGEETYQQQTKQQYIQTNYLPLDITAERALANINQGVLPAGVTAQPVLPNTSIPNDYRLLSGFGRLTYSFDDKYLFTGTFRADGSSKFRDGNRWGYFPGASVAWRISKEEFFKGVPAVSDLKFRLSYGQAGNNRINDFLYDQLFGAGNAPYYLNHLQVLGSSATTLPNPDLKWEVTTSRDFGVDLALWDNRVQFTGDIYYNTTTDLLINRPIPPFLGYTSQLQNIGKTSNKGIELQLTGNIVSKPNFTWTATANASLNRGKIESLGSGLEEIPGIASGWAGTALNRDYVARVGQPVGQMFGYVTDGYLTADDFETYNTTTQTWTPKAGLVNNLGLIGETAFRPGLIKLKDLNGDGLINDQDQTVIGDANPKVAGGLNQQFTFHNFDASVFLNFVLGNDIYNANKLEFTSNTANTVFSNVLDVMEDRYRTINADGTPITDLATLRQVNQNASIWTPTRNYFLHSWAVEDGSFLRINNVTLGYTLPKALTTRAKVQQLRFYVTLNNLYTFTKYTGYDPEVNTRRSSPLTPGVDYAAYPRSRAFLFGLNLSL
>NZ_CP007145.1|WP_044001649.1|1755215_1757057_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKSFVSVRAALAGLALAGSAGVITSCKDFLDVEALALNTTASTFSTVAGATAAVIGAYDPLSGDPGYGQRISTYFPYDSDEMIGSSGAADGARRSIARYRSLATNTEITNPWNTLYQGVERSNICIQQIPQMALYNGGTAADTAALHRLHGEVLTLRAQYYFELIRNWGDVPAQFTPSVSGQDFNLPNADRNATLTRLIADLLEAEKLVPWRTRAGAASERITKGAVKALRARLALYRGGYSLQGNQMTRPADYLDYYRIARDECAGLLANRGEHTLNASFLELFRSINEQRPEAANEIMFQVGMGGSTAASDSKLGYYNGPRLNASPIYGSTQGAVTVVPTYFYAFDSLDARRDVTITTYSIPATNFQTGVALGAITDGKFRRDWHSPAIPGTGNYLGYNWPLIRFADVLLMFAETENELNGPTAAAQNALLEVRTRGFGGNRTRALAGLDLSSKASFFNALVNERYLEFGSEGIRKYDLLRWNLFETKLAETKANLLKLALNQAPYQNVPQYMYYRTPAAGNVQWARSFYRPAPATAPTGTVRVNWRQAIDAAYIANTRPTGTTATVGTATATSIGSGLAAEYVPGQGKELLPIPQSTLAADPALKQNFGY
>NZ_CP007145.1|WP_044001650.1|1757231_1757540_+|cupin-domain-containing-protein
MNNETWLTVADGVQRRVLTHGPDLMLVKVRFETGGIGARHQHVHSQITYVESGVFRCVVGEEEMVLRAGETFYAAPNVWHGVECLEAGVLLDSFSPMREDFV
>NZ_CP007145.1|WP_155833114.1|1758768_1759734_+|pectate-lyase
MLVYQRAVGGWPKAVNEVKVKYDHPLTAAERAAARAITSKPDATIDNEATTREIRYLAGAFATTRNPVYRAAAEKGVRYLLQMQYPNGGFPQYYPDLSSYRHQITYNDDAMIRALQVLRDVSRRANGLEVLDAALTEPAQQAVNRGIECILKTQYVQNGTLTAWCAQHDEKTLLPAKARAFELAALSGMETVNIVRFLMDTENPTPAIRKSVEAAVAWLEAVKLQGFAVKDQPDPKQPKGFDRVLVPEAGSVIWARFYDLKTNQPIYVGRDSQPRAALADIEYERRTGYAYAGVWPAKLLSRDYPRWQQKWNSNAPQGRNN
>NZ_CP007145.1|WP_044001651.1|1759744_1761268_+|tagaturonate-reductase
MPQLSRQLLSPAAAGPVALPSADLLNLPEKVLQFGTGVLLRGLPDYLIDKANRQGIFNGRIVVVKSTDGGDIDAFRRQDGLYTLGIRGIEDGREISENVVCGAISRVLSAKSQWADILACAANPELTVVISNTTEVGIQLVSDDITQSPPQSFPGKLLAFLLARYHAFQGDKTRGLVIVPTELIPENGSKLESILLEQAHRNNLDAEFIDWLETANQVCNSLVDRIVPGRPDAATQTALETELGYHDELLTMSEVYTLWAIEGDARVKQVLSFEQADAGVVVQPDINLFRELKLRLLNGTHTLSCGLAFLAGLPTVREAMEDADLAGFIHNLMLGDLLPGIPYAVDEKVGQRFGMQVLDRFRNPAIEHRWLSISMNYTAKLQMRCVPTLLHYHRKLQAVPHYIALGFAAYLRFMRATRQEGGVWYGEANGQPYPIQDEKASYFADLWQRLEPAELTRTVLHNQTLWGHDLLLLPGFADCVTRYLEQLLELGAPATVAHALNRKPVAV
>NZ_CP007145.1|WP_044001652.1|1761423_1763079_+|altronate-dehydratase
MKHLVAKIHPDDNVLVALQDLPVGTPVTWDGTTVTTTEKIPAKHKLALQFLAPGDPVHMYGVLVGKAAQAIGVGGLLTTSNMRHATDSYDEHRQHRPEWPAPEVSQWQERTFQGFHRPDGRVGTANYWLVIPLVFCENRNIQVLEEALINDLGYARRKSYQPQTQELISLLRAGKTVEEILATDLHSAEDGQARPRLFPNVDGVRFLTHEGGCGGIRQDAQTLCGLLAGYITHPNVAGATVLSLGCQNAQVSMLQAEIDRRSPGGLQKPLYILEQQKIGTEEALISTALRQTFAGLMLANQATRQPAPLSKLCIGLECGGSDGFSGISANPAVGHVSDLLVALGGSVILAEFPELCGVEQELVDRSVDTATAERFSSLMKAYGDSAVAVGSGFDMNPSPGNIRDGLITDAMKSAGAARKGGSSPVVAVLDYPELVTQPGLNLLCTPGNDVESTTAEVGSGATVVLFTTGLGTPTGNPIAPVVKISSNTALARRMPDIIDLNTGTVIDGEETIEQAGARILDYVVRVASGEEVAAVRHDQTDFIPWKRGVSL
>NZ_CP007145.1|WP_044001653.1|1763301_1764732_+|glucuronate-isomerase
MKPFLNEDFLLRTATARTLYHEYAQQMPIIDYHNHLLPDQIAEDRQFDTITQVWLYGDHYKWRAMRTNGVPERYITGDASDWEKFEKWAETVPQTVRNPLYHWTHLELQRYFGITELLSPASARRIYDQCNALLQTPEYSVRNLLRKMNVEALCTTDDPSDSLEHHRALQSSGFEIQVLPTFRPDKVMAVEDAASYNAYLDKLGQSAAVDIHTYHDLQTALRLRHDYFAALGCRLSDHGLEQLYAADYTDAEINDIFLKIRGGKELIPAEVVQFKSALLILLAEMDWEKGWTQQFHLGALRNNNARMLRQLGPDTGWDSIGDFSQGRALSTFLDRLDGQDKLAKTILYNLNPADNELMATMVGNFNDGSVAGKVQFGSGWWFLDQKDGMEKQLNALSNMGLLSRFVGMLTDSRSFLSYPRHEYFRRVLCNLLGQDVENGELPHDLELLGSIVQNICYHNAKAYFGFEKVPAETAAV

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Crispr_ID: NZ_CP007145_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007145_5

3723201-3723306

Orphan

Consensus_repeat	Method
GTCGTTTTTGTCTGCTACGCCGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007145_5

>merge|NZ_CP007145|5|3723201-3723306|CRISPRCasFinder
GTCGTTTTTGTCTGCTACGCCGTCACCATCGGCGTCGGGGCAGCCGCGCAGGGCGGGCAGGCCGGCTTCGTCGGGGCAGTCGTCGTTTTTGTCGGCTACGCCGTCA

>NZ_CP007145|5|5|3723201-3723306|CRISPRCasFinder
GTCGTTTTTGTCTGCTACGCCGTCA	CCATCGGCGTCGGGGCAGCCGCGCAGGGCGGGCAGGCCGGCTTCGTCGGGGCAGTC
GTCGTTTTTGTCGGCTACGCCGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007145.1\|WP_044002984.1\|3718639_3719035_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044002992.1\|3729909_3730554_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP007145.1\|WP_044002983.1\|3716672_3718427_-\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|213991
NZ_CP007145.1\|WP_044002981.1\|3714722_3715376_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_052346564.1\|3728526_3729021_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366960
NZ_CP007145.1\|WP_044002988.1\|3721973_3722528_-\|DUF4252-domain-containing-protein	unknown	unknown	gnl\|CDD\|379445
NZ_CP007145.1\|WP_155833123.1\|3733865_3734915_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP007145.1\|WP_044002985.1\|3719131_3719503_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_044002979.1\|3712241_3712688_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP007145.1\|WP_044002989.1\|3724465_3725755_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP007145.1\|WP_052346565.1\|3730679_3733640_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NZ_CP007145.1\|WP_044002986.1\|3719618_3720026_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP007145.1\|WP_044002993.1\|3735845_3736700_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP007145.1\|WP_044002982.1\|3715491_3716556_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP007145.1\|WP_044002987.1\|3720193_3721768_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007145.1\|WP_155833022.1\|3712862_3714608_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224206
NZ_CP007145.1\|WP_044002994.1\|3737145_3739284_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP007145.1\|WP_044002991.1\|3729017_3729902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366960
NZ_CP007145.1\|WP_052346563.1\|3725949_3726996_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NZ_CP007145.1\|WP_044002990.1\|3727240_3728494_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685

Protein	Function_ID	Function_description	E-value
NZ_CP007145.1\|WP_044002992.1\|3729909_3730554_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	3.79291e-51
NZ_CP007145.1\|WP_044002983.1\|3716672_3718427_-\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|213991	cd07436, PHP_PolX, Polymerase and Histidinol Phosphatase domain of bacterial polymerase X. The bacterial/archaeal X-family DNA polymerases (PolXs) have a PHP domain at their C-terminus. The bacterial/archaeal PolX core domain and PHP domain interact with each other and together are involved in metal dependent 3'-5' exonuclease activity. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. PolX is found in all kingdoms, however bacterial PolXs have a completely different domain structure from eukaryotic PolXs. Bacterial PolX has an extended conformation in contrast to the common closed 'right hand' conformation for DNA polymerases. This extended conformation is stabilized by the PHP domain. The PHP domain of PolX is structurally homologous to other members of the PHP family that has a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	3.33033e-138
NZ_CP007145.1\|WP_052346564.1\|3728526_3729021_+\|hypothetical-protein	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	8.60358e-50
NZ_CP007145.1\|WP_044002988.1\|3721973_3722528_-\|DUF4252-domain-containing-protein	gnl\|CDD\|379445	pfam14060, DUF4252, Domain of unknown function (DUF4252). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 182 amino acids in length.	4.92343e-23
NZ_CP007145.1\|WP_155833123.1\|3733865_3734915_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.75681e-27
NZ_CP007145.1\|WP_044002979.1\|3712241_3712688_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	1.71824e-22
NZ_CP007145.1\|WP_044002989.1\|3724465_3725755_-\|M24-family-metallopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	2.68299e-97
NZ_CP007145.1\|WP_052346565.1\|3730679_3733640_+\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	1.83804e-28
NZ_CP007145.1\|WP_044002986.1\|3719618_3720026_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	2.07071e-50
NZ_CP007145.1\|WP_044002993.1\|3735845_3736700_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.65511e-25
NZ_CP007145.1\|WP_044002982.1\|3715491_3716556_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	9.55684e-51
NZ_CP007145.1\|WP_044002991.1\|3729017_3729902_+\|hypothetical-protein	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	1.74043e-48
NZ_CP007145.1\|WP_155833022.1\|3712862_3714608_+\|hypothetical-protein	gnl\|CDD\|224206	COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only].	0.00519472
NZ_CP007145.1\|WP_044002994.1\|3737145_3739284_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.78147e-36
NZ_CP007145.1\|WP_052346563.1\|3725949_3726996_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.82888e-51
NZ_CP007145.1\|WP_044002990.1\|3727240_3728494_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.14366e-87

>NZ_CP007145.1|WP_044002988.1|3721973_3722528_-|DUF4252-domain-containing-protein
MKLRHFSFLLAFGLLLLAGCRAGGPGNPARTVAEFFNKYENRSGFKATDWNAGLGTRFVLGRIAKLGGGSDISEALTSIRTARILTFTPTTGNARDLVAEGLNKEVDGLLANERYTPLAVTTAEGPNQMRYSVREQGGKVSEFVAVGTQGSTDSFVLVSVAGNFTREQVAQLSKVLPSVISGTN
>NZ_CP007145.1|WP_044002987.1|3720193_3721768_+|hypothetical-protein
MKQLYLFLGFLLSISMGWAQKATSPKFPVEPRQPARAELLLEAYSSDVQVQPLLEDSSLVLLVERDPILSGKSEYYFQKFNHDLQPIRRADIPVPRGYDFQSLCSEGTDVYAIFSGVDPGTLWVAAFDSRTGELGTGEFKTKRTRGIHELKALDGKLFVTVEVDQHLTILLLDLHTAKFQFLPSVYEPLPTRFTFLADSVTKRAELILSETNGFKSRLQLKQLSDDGRLIRSEFVQASSERGLLDAQLSPGDSAARLLAGTYTLRDSRYSQGLFASDLTAGVTSTGQRRSLRYYDFLNLKHFFDFMKPAKVARMRQRSERLRASDRQFRHRYQLLMHDMVATSEGFVLVSEVYYPRYNNSNLNYGNLGSLANYGYGGFGYPSRYNNFYNNRRASEGFRTTHALICGFDRQGNLLWDNSFLLKEIEHLQLQETVRMRPLSDGRRMAMAYLKDDEFHYKVVDQAASAPNDWQVTLRPADPTAKTNDTSQEHLLTWYGGRFLACGYQHVRPEKGPGRDVFFLNVLEF
>NZ_CP007145.1|WP_044002986.1|3719618_3720026_+|EVE-domain-containing-protein
MNYWLVKSEPAAYSWDTFVRDNGTDWTGVRNFQARNFLQQMQPGDLVLYYHSVTDKQVVGIAEVAAPAAPDATAEAGSTWVAVHLKPQQPLARPVSLAQIKQDVRLSQIGLLRQSRLSVMALKPEEFDVLLELGS
>NZ_CP007145.1|WP_044002985.1|3719131_3719503_+|hypothetical-protein
MTFLFLLTLNGCKQDADVVAPEALFGKDWYNTRQQPDGAGFFIYKVQGTYTPQGGWGIDGFRLEKDGAFVLHTQGPADGPLDITGSWKPEGASNYRISLTNGQPSYLLTIELVNDTTLRARQN
>NZ_CP007145.1|WP_044002984.1|3718639_3719035_+|hypothetical-protein
MRLFTLLSCLSVLLLAATCNPDPKATAQLKQLERTWLHAHEEDQGDVRVYRPNTYAFPPSRGRTGFAFEHNGLFTQLDIAPTDGIEGRKGRWTAENDHTLRISLDDKKDPDYKLEVVSLENEVLKVRRVEL
>NZ_CP007145.1|WP_044002983.1|3716672_3718427_-|DNA-polymerase/3'-5'-exonuclease-PolX
MDNRALIRAFRLTAQLMELHEENPFKIRAYEGTANALEQLSVPVADLDRTGLPDRTGLSKTAAAKVAEMLDTGSFEELTRLLAATPPGVIELLGIKGIGPKKIRSLWKELGIEGPEQLREAAQNDEVSKLKGFGQKTQQAILEALDFTDQSRGKLLYPQAEELAHDLLSRLEATPGVEQAAVAGEVRRRLETVETVTLVAAATQPAAVHQLLNTLDGLTADPSRSGPFAWRGTATASGVKVEIILVAAPDFTNQFLLSTAAEAHLSEALTQELQPGQPATLRQWLKRERFATEPALYQRAGLQYVEPELREGLGELALARENKLLPLLEDADLRGSLHNHSTYSDGSHTLREMATFLRDQGYEYLGICDHSQAAHYANGLPPERVRQQQREIDELNQELAPFRIFKGIESDILSDGSLDYPPAVLKTFDFIVASVHSNLKMDERKATARVLRAIENPYTTMLGHPTGRLLLRREGYPLNHKAVIDACAQHKVIIEINANPWRLDLDWRWVRYALDQGVQLSINPDAHHTNGYADMRYGVFMGRKGGLTKDMTFNAKSVDEIAAYFAERKASIKAPLEFKDSLFG
>NZ_CP007145.1|WP_044002982.1|3715491_3716556_-|glycosyltransferase-family-9-protein
MKILVLRFSSIGDIVLTTPVVRGIKQQVPGAAVHFATKPAFRGLLEPNPYVDKVHCLTGSLPELVAELKAEQFDFVVDLHHNLRTALIKAQLGVKSASFDKLNWRKWLLVNLKINTLPAVHIVERYLAAAAPLGVENDNQGLDYFIPDQDEVDISATLPPAFQRGYVAFAIGAQHATKRLPVERIIELCGQLRRPIVLLGGPTDESTGHIVELAFEQGTASSPPAPGRIPDSPYYFPATAPDSKLPATSIYNACGKFNLNQSASLVRQAGLVVSHDTGLMHVAAAFRKEIISVWGNTVPEFGMYPYRTEFRVLEVPDLPCRPCSKIGYEKCPKGHFRCMRDIRFDLDLPGLYGL
>NZ_CP007145.1|WP_044002981.1|3714722_3715376_-|hypothetical-protein
MRVSTLRLLTFAVLAVWLTACGPSIYMAQDFRAYVPKHKTVAILPATVTMQLRPNQARNTSAEQLRNLEQQSGSDFQEKIYSWLLRRAGQRAYTVQFQDIMQTNSRLRESGIPFSELRNHSPQELAKILGVDAVLTTSVRTSKPMSDGAAVALGVLVGAWGATNQANITVNIHESDAGKLLWKYDYVANGSVGSSTEGMVNILMRNASKKFPYTPKS
>NZ_CP007145.1|WP_155833022.1|3712862_3714608_+|hypothetical-protein
MPRILRFIVVLLLYAGIFLVFTWPLAGNFSTAFPAVPGHDSYQFYWNVWHFREAVTTGHNPFFTDWLFYPVGSGLIMHAYIPIIGLLAVLVGNEMLAINLGLLASYALSGTGAYYLARRWVKNPVLGLLAGFIFAYSPYKLQRLPEHFNLVLTATVPFYVLAFLRAFEFQEGRFLPVVRSWAAVLACGLLGIITLFSDYYVLFGLIYFSLLYASWYWLRIGRLNWRNWRNWRTWAVLAGILLVSHIGIRLLRLAGVPDTGKWWGGDVVAFLLPPATSRWLDFAWAERLYNSSLFNMPGSIENTLFIGYALPLLALGLWLWRRRPRSLRSQDAQGRPLIWVLVVFLLFTVPTLRVYGHERLNLPTSLLHFIPFFNNIRCPTRWIMLVGLLLPIISFSALEAAWQGLKPASRYLLSAGLFAVVALEFWPKPYYQATAASVPAFYRQLAARPGTTLVPIPLGVTDGNRQAGHLPTEQLFYQAFHRKKLPGGYLSRVKPELFLALRQQPVLRALLQVQTHPDSLGTSPTPEQMRAFLQQYKPAAFVIDSSYQHHPVRPYLRQLLQPFGYTEQLVEQRVLFVPSPR
>NZ_CP007145.1|WP_044002979.1|3712241_3712688_-|OsmC-family-protein
MDPVIIVPAILVKVGPAALTADIQAGRHTWLVDEPVTVGGEDRGPTPYDMLLSALGACTAITLRLYATRKQWPLEGIEVRLSHQRVHREDCDQCEQPGTTLEEIHKELRLLGPLSADQRQRLQVVSEKCPVQKILTSGVLRVITVLAE
>NZ_CP007145.1|WP_044002989.1|3724465_3725755_-|M24-family-metallopeptidase
MRYGSISPDLFTENRRRFREQLPPASLAIFHSNDVMPTNADGTMAFRQNNDLFYLSGADQEESILVIFPDAVLPQYREILFLKETSEHILVWEGYKLTKEQAREQSGIPTIMWLESFKSVLPALMNEAENVYLNSNEHIRSTVEVETRDARFIKWIKEAYPLHQYRRVARIMHQLRAVKSPEEIRLMQKAADITEKAFRRLLGFVKPGVMEYEIEAEIFHEFLRNASRGPAYGSIIASGANACILHYVSNDRECRDGDVLLMDFGAEYANYAADLSRSIPVNGTFTKRQRAVYEAVLSVMKFATARLVPGGNIEEYHAAVGRQMEQELIKLDLLNAQDVKNQDPAAPLYKKYFMHGTSHYLGLDVHDVGYKYRTFEPGMVYTCEPGIYIREEGLGIRLENDILITKTGNDDLMKNIPLEAADIERLMKR
>NZ_CP007145.1|WP_052346563.1|3725949_3726996_+|glycosyltransferase-family-9-protein
MPEPAAPPAILLIQTAFIGDVILATALLEFLHRTEPDTPVDFLVRKGNEGLVQGHPHVRRVLVWDKKTNKYGGLWQLLQQIRHTNYGRVVTLQRFASTGLLTAFSGAPERIGFDKNPLSFRFTRAIPHVIGAGVHEVSRNLHLLDPAYEGPVVPPRLYPTPADEATAAPYATVGPYICIAPTSVWFTKQFPEEEWLKLLTALPPQYTVYLLGGPPDTAACQQLLERTPRPGVVNLSGTLSLLASAALMRGAVLNYVNDSAPMHLCSAVGAPVCAVYCSTVPFFGFGPLSPFSRIVEIEEDLECRPCGLHGYKACPLGHFRCAHGIRTQQLLAVLAEAEVGYEGLRVGG
>NZ_CP007145.1|WP_044002990.1|3727240_3728494_+|insulinase-family-protein
MSDYDLYELPNGIRVLHKQVLHTKIAHCGFLLDIGSRDEKPHQQGLAHFWEHMAFKGTEKRKSFHILNRLETVGGELNAYTTKEKICFYASLLSTHFERAFELLTDLTFNSTFPEKEIEKERGVILEEMAMYHDAPEDAIIDDFDDVVFARHSLGHNILGTRESVSGFQQADFYQFLQENVRTDRLVFSSVSNLPFKEVKRLADKFLAPLPARLGARPRLSFSGYQRLERLEHKPITQAHCLIGGPAYALHDERRIPFFLLSNLLGGPGMNSRLNLAVREKYGLVYTIDATYSPYTDTGLFGIYFGTEKKQVNRTVSLVQKELKKLREQTLGTSQLHTSKEQLMGQLAMAEESNGGLMQLLAKSTLDIGRVESINEIFEQVRRITAPQLLELANEILTDENLSVLQYVPEDKVKKVK
>NZ_CP007145.1|WP_052346564.1|3728526_3729021_+|hypothetical-protein
MTGAILPTHRLPIFGHISYYRPGDMLENRLALSRAGLHRPPRTGVSGSEAEGADSIILADQYEDDDFQEAVITYSGSGGRNPRTGKQTTHQQMTGRNVMLRRSLETGRPVRVFRKINDETGSGYRYEGLYRVVDAMYETGKAGFLVWKFRLVPESFKLQPRLLL
>NZ_CP007145.1|WP_044002991.1|3729017_3729902_+|hypothetical-protein
MRHQPAPVRLGAIPDILPGHEFLNRPDVKNAGLHRDLYKGISSLKGHPAEAIVLSGGYEDDMDLGSCILYTGEGGNQDGRQVADQQLSGGNLALSVSFAQQTPVRVIRKVQEGSLSFYQYAGLYYVTQFSQEVGKSGHRIWRFRLEQLSTPADAAPETPTVQEPEPTYTAAPRRLRLAQQIIRDTTVMHAVKQLYDFRCQVCRARLAVPGGAYAEAAHIRPLGGAHHGPDKISNLLCLCPNHHATFDRGAWAIQDDWRLVGEPGRLTVAPTHQPHPAHLLYHRRRIYQPATLFT
>NZ_CP007145.1|WP_044002992.1|3729909_3730554_+|O-methyltransferase
MYSPDDAQRYADHHTTPESPLLARLNRETHVQLLHARMLSGHAQGRLLSMISHMIRPRRVLELGTFTGYSALCLAEGLAEDGRLHTIEQNPELETRIRRYVREAGEEARLQLHIGNARDILPTLAEIWDLVFIDADKINNDTYYELVLPQVRPGGFLLIDNVLWGGKVLDEYPVKLSDKDTHAVRAFNDKVQADERVENVFLPLRDGLFLVRKR
>NZ_CP007145.1|WP_052346565.1|3730679_3733640_+|TonB-dependent-receptor
MLRNFLLILLLLTGLTGAAQAQTTVSGRVLDGKDQSPLIGANVLLTQIPDSIKRGAAVELDGSFTVPGVPAGRYVLTVSFLGYQNLRRTVEVSGSPLNLGSLTLQAGGGIALRGVEVVGQAAAAVQKGDTAQFNAGSYKTNPDANAQDLITKMPGVTVDPGTGKVQAQGEQVQRVLVDGKEFFGNDPDAVLKNIPAEVIDKIQVYDRSSDQSQFTGFDDGNQQKTINIITKPSFRNGKFGRVLAGYGPQDDRYRLSGNLNVFKGKQRFSIVAQSNNVNEQNFGTEDLLGVVGASRQGGGGGQGQRGQGGGRVGGGGQGGGGGGNNSGDFLVSQQGGISKTHALGLNYSDTWGTKTEVQGSYFFNLSDNTSRTNLLRRYVAPEGQTQDLRYNELSLNTSRNINNRFNFRLEHKFDSLNSLLWRPSLSVQRNTGNSLLDGNTFQVQPDAGSLNQGTNNSSYRSALTGLTATNQLLYRHRFQRRGRTFSLGVNTSYNDKNGDNNLLSSTTFFQNNQPQTTLLNQFSELNQTGWAWTGNLNYTEPLGLKSILQLAYSLSYTPNDSDKKTYNFSPGEQQYSILNDTLSSVFQSQYLTNSGEVTYRFQDKAFQWSVGAAVQSAQLRSDQEFPRPGSTRRTFLNVLPNAQVRYNFSRQQNLRLNYRANTNPPGISQLQEVVNNANPLQLTTGNPNLRQETRHNVFLRYSAAVPEKSRSFFALLGGSYVNNYITNNTIYAGTAPITVDGVVIPAGGQLTRPVNLNQQYTLRSFVNYSLPLAFIKSNLNVNATGTYSQTPGLVFSELNYSRTPTAGLGVALSSNISPQLDFTLSSNSSQSYVRNTLRQQLNSQFFRQNTALRFSWIVTKGITVQSDVNHQLYSGLSAGYNQNFVLWNASLGKKLGPKQQAELKLYAFDLLGQNNSIQRNITAAYTEDVQTNILQRYFMLMFTYNIRSFAGSSPTDALPGDAPTERRRGPGGFGQPGSGPPPGGGM
>NZ_CP007145.1|WP_155833123.1|3733865_3734915_-|alpha/beta-fold-hydrolase
MFAVQNTSLDNHRYPELTWTSAEDLLRQNQPAAEQPGLLGPYSDEELVKRLPGFANHYATVNGVRLHYVAGGRGRPLVCLPGWPQTWYSFHPVAQELARHYHVILVDIRGMGSSDKPTTGYDKKTMARDIYELVQQLELGPVSLLGHDIGGMVASSFAYNYPAATDRLIVLDGTHPTEGMRYMPMLPAPGALAGKMDGQQPYIWWMAFNQIKELPEKLLAGRFHVLLDYLFAYVMLDESRMTAFDRAVYAAVYNQPENIRAANAWYQALGQDMADHQSYAQLSLPVLGIASYVAHGTLQQSVPAMTTNGRVITLADSGHYLFEEKPAQVLEEVLAFLQEHQPPAAPVVA
>NZ_CP007145.1|WP_044002993.1|3735845_3736700_-|helix-turn-helix-transcriptional-regulator
MNDANSFLVYDRPALASSAEQAWPGLRVERYQLEAMAMPAHAHDQHMLILHQGVQPVRSSRRNGSGTEEDLFRPGDAGLYPAGEYGPTAWYGPADIIQLQIDTQALENRASLQASKFTLRDRFRFEDGLLTQLGRQLLTTAGTRHTLGLLYVESLTNALCYHLLEHHAIQEQRPAPGRTLSGSVLTRIEAYLEGNMEQVVTVEALAGLANLSVFHFMRCFRHTTGQSPYQYVLGWKIRRAQHLLRIGELPVAAVGEVLGFASPAHFSAAFKRATGRSPRDFQQR
>NZ_CP007145.1|WP_044002994.1|3737145_3739284_+|LysM-peptidoglycan-binding-domain-containing-protein
MKRVLLLVFLWLPLLVAAQTVPVPAQLSMAGLRLRLTDGGRAALQQKVDALRRHPASFQARVVLADAYFPIIDRIFQQEGLPLDFHFLALQESGLQGDAQSIHDAVGYWQFKRESAADFGLLMNDAIDERKHIAASSKAAAQYLLRNNKTFRNWTNSLLSYNLGLTGTKPYTLPTDADASEAEITEKTHPYILTFLAHKIAFEPAIGLNTKPPLLFQEFPAPAGQALSVMAQAMQQNPDDLVKYNRWLLAPTVPTDRVYTMLVPITDPVQLTALAAQQKNATAGQLLNQPTPDPENADFVRVNGLKAVVALPGDTKESIAKRANLKMRKFMQFNDLFPFDNIVAGQPYFVQKKRDKAAVEYHVTRPGESVVTVSQKYGIRAKAIWSKNRMARNEELRPGRVLWLQHTRPKNVPVEYADGNNATALAAFEKPVTPTAAAPAPAAPTAPTPQPEKKKKQEEAEPYMGGTANSSRMLEDATEDEGMVVQPDSATDEHTENLNNLPPAPVTPVAQPTAPAPKKALPAAAPIADEPSEAEPITEPLPRPVPATPAPTPRPAAPVAAPASVPAAPTKPVAAPAPRPTPPSYPTPLAAPAVEPVPVSGLHTVQPKENLYSVARRFGLRPSDIILWNNLPQNPSLRIGQTLRVTASVSAVASPVPAAATPETIRHTVQPGETMYSVSRKYGVTIKQIMEWNSKPDFAVKPGEVLIITPAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72086 : 80246

Tupanvirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044000594.1\|72086_73382_+	nucleotide sugar dehydrogenase	A0A218MKK1	uncultured_virus	4.8e-05	21.4
WP_044000595.1\|73449_74475_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	7.6e-62	39.5
WP_044000596.1\|74565_75618_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.7e-86	50.8
WP_044000597.1\|75705_76713_+	SDR family oxidoreductase	A0A2K9L4U8	Tupanvirus	2.2e-93	53.8
WP_044003983.1\|76813_77686_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	1.4e-96	59.2
WP_081768218.1\|77867_79100_-	chromate efflux transporter	NA	NA	NA	NA
WP_044000598.1\|79268_80246_-	isopenicillin N synthase family oxygenase	S4VNP9	Pandoravirus	2.8e-21	30.1

DBSCAN-SWA_2

964292 : 1013909

Sinorhizobium_phage(11.11%)

transposase,protease,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044001166.1\|964292_965075_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_044001167.1\|965176_966073_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_044001168.1\|966133_966835_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_044001169.1\|966847_967480_-\|tail	phage tail assembly protein	A0A0F6SJ21	Sinorhizobium_phage	4.4e-28	41.5
WP_044001171.1\|967588_968530_-	malate dehydrogenase	NA	NA	NA	NA
WP_044001172.1\|968638_969967_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_052346147.1\|970199_971885_+	hypothetical protein	NA	NA	NA	NA
WP_044001173.1\|972040_972868_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_044001175.1\|972990_973320_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_044001176.1\|973450_974011_+	hypothetical protein	A0A1V0QGA1	Shearwaterpox_virus	6.9e-17	32.0
WP_044001177.1\|974119_974773_+	phosphopantothenoylcysteine decarboxylase	NA	NA	NA	NA
WP_044001178.1\|974765_975689_+	DUF4835 family protein	NA	NA	NA	NA
WP_044001179.1\|975841_977515_+	DNA repair protein RecN	NA	NA	NA	NA
WP_044001180.1\|977639_978458_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_044001181.1\|978518_979190_-	DUF3885 domain-containing protein	NA	NA	NA	NA
WP_044004163.1\|979404_980367_+	pectinesterase	NA	NA	NA	NA
WP_044001182.1\|980454_981663_-	porin	NA	NA	NA	NA
WP_044001183.1\|981823_982522_-	hypothetical protein	NA	NA	NA	NA
WP_044001184.1\|982824_983892_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044001185.1\|984053_984866_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044001186.1\|984996_985821_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_044001187.1\|985902_986916_-	hypothetical protein	NA	NA	NA	NA
WP_044001188.1\|987168_988461_+	hypothetical protein	A0A2P0VNJ6	Tetraselmis_virus	5.0e-10	24.4
WP_081768267.1\|988457_988796_-	hypothetical protein	NA	NA	NA	NA
WP_044001190.1\|989156_990026_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052346148.1\|990063_990324_-\|transposase	transposase	NA	NA	NA	NA
WP_044001191.1\|990611_992423_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-15	26.9
WP_044001192.1\|992477_993137_-	DUF4279 domain-containing protein	NA	NA	NA	NA
WP_044001193.1\|993137_993443_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_155832839.1\|993471_994446_-	proline iminopeptidase-family hydrolase	A0A291AV30	Mycobacterium_phage	2.8e-05	32.7
WP_044001194.1\|994537_995332_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_044001195.1\|995609_997835_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_044001196.1\|998143_999718_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_155832840.1\|999948_1001493_-	family 16 glycosylhydrolase	M1I0P8	Acanthocystis_turfacea_Chlorella_virus	2.0e-29	36.6
WP_155832841.1\|1001706_1002102_-	hypothetical protein	NA	NA	NA	NA
WP_044001199.1\|1002260_1003121_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_052346150.1\|1003313_1004087_+	hypothetical protein	NA	NA	NA	NA
WP_044001200.1\|1004298_1005339_+	hypothetical protein	Q9EYF3	Enterobacteria_phage	2.1e-06	29.0
WP_081768269.1\|1005253_1006204_+	response regulator transcription factor	NA	NA	NA	NA
WP_044001202.1\|1006289_1006658_-	cupin domain-containing protein	NA	NA	NA	NA
WP_044001203.1\|1006700_1006931_-	hypothetical protein	NA	NA	NA	NA
WP_071883067.1\|1007181_1007616_+	CsbD family protein	NA	NA	NA	NA
WP_044001204.1\|1007753_1008122_+	YtxH domain-containing protein	NA	NA	NA	NA
WP_044001205.1\|1008662_1010219_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	1.2e-87	37.1
WP_052346780.1\|1010487_1011510_-	hypothetical protein	NA	NA	NA	NA
WP_052346151.1\|1011761_1013909_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	6.7e-68	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007144

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection