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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_HG917868 Clostridium bornimense strain M2/40 chromosome M2/40_rep1 4 crisprs cas14j,WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DinG,DEDDh 0 3 6 0
NZ_HG917869 Clostridium bornimense strain M2/40 chromosome M2/40_rep2 1 crisprs DEDDh,WYL,csa3 0 2 0 0

Results visualization

1. NZ_HG917868
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG917868_1 217843-223120 TypeV I-A
80 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG917868_2 379114-379206 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG917868_3 1653092-1653183 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG917868_4 2299388-2299478 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_HG917868_1 1.66|222136|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT 222136-222172 37 JN800508 Clostridium phage phi24R, complete genome 6315-6351 10 0.73
NZ_HG917868_1 1.79|222991|35|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT 222991-223025 35 MN693045 Marine virus AFVG_25M135, complete genome 19787-19821 10 0.714
NZ_HG917868_1 1.80|223055|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT 223055-223091 37 LR721753 Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence 73973-74009 10 0.73
NZ_HG917868_1 1.80|223055|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT 223055-223091 37 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 404352-404388 10 0.73

1. spacer 1.66|222136|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT matches to JN800508 (Clostridium phage phi24R, complete genome) position: , mismatch: 10, identity: 0.73

tagttgcatatgcaacatcagaacctaaagaagtttt	CRISPR spacer
ttttagagggagcaacatcagaaactaaaaaagtttt	Protospacer
*  * * . . ************ *****.*******

2. spacer 1.79|222991|35|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT matches to MN693045 (Marine virus AFVG_25M135, complete genome) position: , mismatch: 10, identity: 0.714

tttactatgttaataccaatcttactccaatccac	CRISPR spacer
ttacaaatgttaatagtaatcttactccaataaca	Protospacer
**    ********* .**************    

3. spacer 1.80|223055|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT matches to LR721753 (Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence) position: , mismatch: 10, identity: 0.73

ttagattctaaatatccttctttaaaaggtgtttttg	CRISPR spacer
tttcattttaaatatccttctttaaaaggttccacaa	Protospacer
**  ***.********************** .. . .

4. spacer 1.80|223055|37|NZ_HG917868|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 10, identity: 0.73

ttagattctaaatatccttctttaaaaggtgtttttg	CRISPR spacer
atttatgaaaaatatgcttatttaaaaggtgttttca	Protospacer
 *  **   ****** *** ***************..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 166022 : 175966 8 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_2 664953 : 766170 105 Erysipelothrix_phage(78.02%) tail,head,protease,portal,terminase,capsid,holin NA
DBSCAN-SWA_3 1234376 : 1242295 7 Clostridium_phage(16.67%) protease NA
DBSCAN-SWA_4 1508377 : 1597285 87 Erysipelothrix_phage(56.45%) tail,head,integrase,protease,tRNA,portal,terminase,capsid,holin attL 1500781:1500798|attR 1602167:1602184
DBSCAN-SWA_5 2359618 : 2370101 9 Prochlorococcus_phage(28.57%) NA NA
DBSCAN-SWA_6 2619281 : 2627221 7 Enterobacteria_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_HG917869
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG917869_1 90443-91519 Orphan III-B
16 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_HG917869_1 1.1|90473|36|NZ_HG917869|PILER-CR,CRISPRCasFinder,CRT 90473-90508 36 MN694404 Marine virus AFVG_250M623, complete genome 26531-26566 9 0.75
NZ_HG917869_1 1.11|91127|35|NZ_HG917869|PILER-CR,CRISPRCasFinder,CRT 91127-91161 35 MF360958 Salicola phage SCTP-2, complete genome 229619-229653 9 0.743

1. spacer 1.1|90473|36|NZ_HG917869|PILER-CR,CRISPRCasFinder,CRT matches to MN694404 (Marine virus AFVG_250M623, complete genome) position: , mismatch: 9, identity: 0.75

gcaactttataattttcatattctttagtattttgc	CRISPR spacer
tctaatttataattttcatattctttactatcagat	Protospacer
 * * ********************** ***.  ..

2. spacer 1.11|91127|35|NZ_HG917869|PILER-CR,CRISPRCasFinder,CRT matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 9, identity: 0.743

taaagtggattatgtggtaaattatattttttatg	CRISPR spacer
aatacttcattaggtgttaaattatattttttaac	Protospacer
 * * *  **** *** ****************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage