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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007230 Yersinia similis strain Y_sim_228 chromosome, complete genome 3 crisprs DEDDh,RT,WYL,cas3,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1 0 16 11 0
NZ_CP007231 Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP007230
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007230_1 1371851-1371967 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007230_2 3604171-3605999 Orphan I-F
30 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007230_3 4570153-4570841 TypeI-F I-F
11 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007230_2 2.14|3604979|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604979-3605010 32 NZ_CP009710 Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence 19975-20006 0 1.0
NZ_CP007230_2 2.14|3604979|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604979-3605010 32 NC_006154 Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence 13031-13062 0 1.0
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP054046 Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence 96208-96239 1 0.969
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 LR134252 Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2 78835-78866 4 0.875
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP041249 Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence 39159-39190 4 0.875
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 KF800937 Vibrio phage AS51, complete genome 4764-4795 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 MK820013 Vibrio phage vB_VpaP_MGD2, complete genome 38881-38912 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 KY290756 Vibrio phage Vp670, complete genome 14708-14739 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 JQ088079 Vibrio phage phi-A318 RNA polymerase gene, complete cds 1596-1627 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 MN807240 Vibrio phage VP-HS15, complete genome 21911-21942 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 KF322026 Vibrio phage phi-A318, complete genome 4766-4797 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 NC_047746 Vibrio phage Vc1, complete genome 30198-30229 5 0.844
NZ_CP007230_2 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605519-3605550 32 MT104467 Pseudomonas phage MR4, complete genome 5271-5302 5 0.844
NZ_CP007230_2 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605519-3605550 32 KJ749827 Escherichia phage ECBP5, complete genome 6165-6196 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP026049 Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence 7144-7175 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP026276 Klebsiella oxytoca strain KONIH5 plasmid pKOR-ab4d, complete sequence 129878-129909 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP008842 Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence 63620-63651 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP042546 Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence 158034-158065 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP013339 Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL1, complete sequence 89333-89364 5 0.844
NZ_CP007230_2 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605579-3605610 32 NZ_CP036439 Klebsiella pneumoniae strain ABFQB plasmid unnamed1, complete sequence 112246-112277 5 0.844
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 MN855799 Bacteriophage sp. isolate 97, complete genome 13355-13386 6 0.812
NZ_CP007230_3 3.3|4570301|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570301-4570332 32 NC_028655 Yersinia phage vB_YenP_AP10, complete genome 1831-1862 7 0.781
NZ_CP007230_3 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570361-4570392 32 MN693242 Marine virus AFVG_25M170, complete genome 2558-2589 7 0.781
NZ_CP007230_3 3.10|4570722|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570722-4570753 32 MN693034 Marine virus AFVG_117M74, complete genome 77014-77045 7 0.781
NZ_CP007230_2 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604679-3604710 32 NZ_CP017464 Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence 957-988 8 0.75
NZ_CP007230_2 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604679-3604710 32 NZ_CP031281 Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence 48044-48075 8 0.75
NZ_CP007230_2 2.20|3605339|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605339-3605370 32 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 339838-339869 8 0.75
NZ_CP007230_2 2.20|3605339|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605339-3605370 32 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 411124-411155 8 0.75
NZ_CP007230_2 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605519-3605550 32 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 326572-326603 8 0.75
NZ_CP007230_2 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605519-3605550 32 MN855666 Myoviridae sp. isolate 212, complete genome 16396-16427 8 0.75
NZ_CP007230_2 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3605519-3605550 32 MN855689 Myoviridae sp. isolate 28, complete genome 443-474 8 0.75
NZ_CP007230_3 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570361-4570392 32 NC_010542 Crocosphaera subtropica ATCC 51142 plasmid C, complete sequence 14395-14426 8 0.75
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 810926-810957 9 0.719
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1037617-1037648 9 0.719
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 945975-946006 9 0.719
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 GU943054 Uncultured phage MedDCM-OCT-S04-C24 genomic sequence 4782-4813 9 0.719
NZ_CP007230_2 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604679-3604710 32 NZ_CP051645 Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence 4392-4423 9 0.719
NZ_CP007230_2 2.10|3604739|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604739-3604770 32 NZ_LR723671 Rhizobium flavum strain YW14 plasmid 2 29389-29420 9 0.719
NZ_CP007230_2 2.11|3604799|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604799-3604830 32 NZ_CP053978 Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence 4218-4249 9 0.719
NZ_CP007230_2 2.11|3604799|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604799-3604830 32 NZ_CP009333 Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence 18123-18154 9 0.719
NZ_CP007230_2 2.12|3604859|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604859-3604890 32 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 476926-476957 9 0.719
NZ_CP007230_2 2.12|3604859|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604859-3604890 32 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 70459-70490 9 0.719
NZ_CP007230_2 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604919-3604950 32 NZ_CP013555 Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence 36311-36342 9 0.719
NZ_CP007230_2 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604919-3604950 32 NZ_CP013566 Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence 36311-36342 9 0.719
NZ_CP007230_2 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604919-3604950 32 MK408758 Campylobacter phage CP20, complete genome 159306-159337 9 0.719
NZ_CP007230_2 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604919-3604950 32 FN667788 Campylobacter phage CP220, complete genome 160926-160957 9 0.719
NZ_CP007230_2 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604919-3604950 32 FN667789 Campylobacter phage CPt10, complete genome 160080-160111 9 0.719
NZ_CP007230_3 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570361-4570392 32 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1674765-1674796 9 0.719
NZ_CP007230_3 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570361-4570392 32 NZ_CP041688 Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence 48803-48834 9 0.719
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 157607-157638 10 0.688
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 157607-157638 10 0.688
NZ_CP007230_2 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604199-3604230 32 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1836282-1836313 10 0.688
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 NC_048184 Synechococcus phage S-CBP3, complete genome, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces 6377-6408 10 0.688
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 NC_020865 Cyanophage KBS-P-1A genomic sequence 28018-28049 10 0.688
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 HQ633062 Synechococcus phage S-CBP3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces 6377-6408 10 0.688
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 HQ317389 Synechococcus phage S-RIP2 genomic sequence 35633-35664 10 0.688
NZ_CP007230_2 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604319-3604350 32 NC_025461 Synechococcus phage S-CBP3, complete genome 14962-14993 10 0.688
NZ_CP007230_2 2.7|3604559|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT 3604559-3604590 32 NZ_CP023282 Nostoc sp. CENA543 plasmid pCENA543b, complete sequence 8976-9007 10 0.688
NZ_CP007230_3 3.7|4570542|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570542-4570573 32 NZ_CP028344 Vibrio parahaemolyticus isolate R13 plasmid pVpR13_19Kb, complete sequence 8571-8602 10 0.688
NZ_CP007230_3 3.7|4570542|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR 4570542-4570573 32 NZ_CP028143 Vibrio parahaemolyticus strain R14 plasmid pVpR14_20Kb, complete sequence 6002-6033 10 0.688

1. spacer 2.14|3604979|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009710 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence) position: , mismatch: 0, identity: 1.0

agcgtgcattgacgtgattaacccatcatgac	CRISPR spacer
agcgtgcattgacgtgattaacccatcatgac	Protospacer
********************************

2. spacer 2.14|3604979|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_006154 (Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence) position: , mismatch: 0, identity: 1.0

agcgtgcattgacgtgattaacccatcatgac	CRISPR spacer
agcgtgcattgacgtgattaacccatcatgac	Protospacer
********************************

3. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.969

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtcatgacaaacgggcaggggatact	Protospacer
*****************************.**

4. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to LR134252 (Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.875

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagatgga	Protospacer
******** ****************.****  

5. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041249 (Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagatgga	Protospacer
******** ****************.****  

6. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to KF800937 (Vibrio phage AS51, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

7. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MK820013 (Vibrio phage vB_VpaP_MGD2, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

8. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to KY290756 (Vibrio phage Vp670, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

9. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to JQ088079 (Vibrio phage phi-A318 RNA polymerase gene, complete cds) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

10. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MN807240 (Vibrio phage VP-HS15, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

11. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to KF322026 (Vibrio phage phi-A318, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

12. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_047746 (Vibrio phage Vc1, complete genome) position: , mismatch: 5, identity: 0.844

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
aagcaaggaactgccaaggcttatcagctttc	Protospacer
** .*****************.******.**.

13. spacer 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MT104467 (Pseudomonas phage MR4, complete genome) position: , mismatch: 5, identity: 0.844

ataata-gaagaaagctaagtaagttcagtaag	CRISPR spacer
-caatagggagcaagctaagtaagttaagtaag	Protospacer
 .**** *.** ************** ******

14. spacer 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 5, identity: 0.844

ataata-gaagaaagctaagtaagttcagtaag	CRISPR spacer
-caatagggagcaagctaagtaagttaagtaag	Protospacer
 .**** *.** ************** ******

15. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026049 (Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

16. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026276 (Klebsiella oxytoca strain KONIH5 plasmid pKOR-ab4d, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

17. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008842 (Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

18. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042546 (Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

19. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013339 (Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL1, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

20. spacer 2.24|3605579|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036439 (Klebsiella pneumoniae strain ABFQB plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagcgtcatgacaaacgggcaggggatgct	CRISPR spacer
gtcagcgtgatgacaaacgggcaggagattga	Protospacer
******** ****************.***   

21. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MN855799 (Bacteriophage sp. isolate 97, complete genome) position: , mismatch: 6, identity: 0.812

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
agttaaggaactgccaaggcttatctgcatga	Protospacer
*.*******************.*** ** *  

22. spacer 3.3|4570301|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NC_028655 (Yersinia phage vB_YenP_AP10, complete genome) position: , mismatch: 7, identity: 0.781

aatgggaggtgatgtaatgagcaaggatgatt--	CRISPR spacer
tatgggaggttatgtaatgagtaag--ttactgg	Protospacer
 ********* **********.***  * *.*  

23. spacer 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to MN693242 (Marine virus AFVG_25M170, complete genome) position: , mismatch: 7, identity: 0.781

actgctttcattgtcatcttattaatctctct	CRISPR spacer
tatggtttcattgtcattttattaatcacgat	Protospacer
  ** ************.********* *  *

24. spacer 3.10|4570722|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to MN693034 (Marine virus AFVG_117M74, complete genome) position: , mismatch: 7, identity: 0.781

ttaatggatgttggaaatatgaatcctaataa	CRISPR spacer
ggaaatgatgttagaaatataaatcctaatac	Protospacer
  **  ******.*******.********** 

25. spacer 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 8, identity: 0.75

tgactgctaatattaaaaaagagcattggtat	CRISPR spacer
agcttgccaatattgaaaaagagcattatttt	Protospacer
 * .***.******.************. * *

26. spacer 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgactgctaatattaaaaaagagcattggtat	CRISPR spacer
agcttgccaatattgaaaaagagcattatttt	Protospacer
 * .***.******.************. * *

27. spacer 2.20|3605339|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.75

-atcgataaaggatcggaaagacggcagaaaga	CRISPR spacer
aggcgac-gaggatcggaaagacggcggacagc	Protospacer
 . ***. .*****************.** ** 

28. spacer 2.20|3605339|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

-atcgataaaggatcggaaagacggcagaaaga	CRISPR spacer
aggcgac-caggatcggaaagacggcggacagc	Protospacer
 . ***.  *****************.** ** 

29. spacer 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.75

ataatagaagaaagctaagtaagttcagtaag	CRISPR spacer
tttaaagaagaaagctaagtctgttcagtctt	Protospacer
 * * ***************  *******   

30. spacer 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MN855666 (Myoviridae sp. isolate 212, complete genome) position: , mismatch: 8, identity: 0.75

ataatagaagaaagctaagtaagttcagtaag	CRISPR spacer
taaagttaagaaagttaagtaagttaagtaac	Protospacer
  **   *******.********** ***** 

31. spacer 2.23|3605519|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MN855689 (Myoviridae sp. isolate 28, complete genome) position: , mismatch: 8, identity: 0.75

ataatagaagaaagctaagtaagttcagtaag	CRISPR spacer
taaagttaagaaagttaagtaagttaagtaac	Protospacer
  **   *******.********** ***** 

32. spacer 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NC_010542 (Crocosphaera subtropica ATCC 51142 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

actgc-tttcattgtcatcttattaatctctct	CRISPR spacer
-ttacgtttcattgtcactttattaatctataa	Protospacer
 .*.* ***********..********** *  

33. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 9, identity: 0.719

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
atgcatatccatctctacatcaacggcagctc	Protospacer
*****************  *****   *  . 

34. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.719

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
atgcatatccatctctatatcaacggcagttc	Protospacer
*****************  *****   *  . 

35. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 9, identity: 0.719

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
gtgcatatgcatctcgaattcaacagaagcag	Protospacer
.******* ****** ********  .*   *

36. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to GU943054 (Uncultured phage MedDCM-OCT-S04-C24 genomic sequence) position: , mismatch: 9, identity: 0.719

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
ctgcaaggaattgccaaggttcatcagcagct	Protospacer
   .******.********.********  .*

37. spacer 2.9|3604679|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 9, identity: 0.719

tgactgctaatattaaaaaagagcattggtat	CRISPR spacer
tcccacctaatgtaaaaaaagagcattgggga	Protospacer
*  *  *****.* *************** . 

38. spacer 2.10|3604739|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723671 (Rhizobium flavum strain YW14 plasmid 2) position: , mismatch: 9, identity: 0.719

cggaagcattcggcgagcgagaacttaacatt	CRISPR spacer
atgaagcattgggcgagcgggaactggacgcc	Protospacer
  ******** ********.***** .**...

39. spacer 2.11|3604799|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053978 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aagaatgtttaaatgggataaggacggcaact	CRISPR spacer
tagaatgtttaaaagggttaaggagtggcttt	Protospacer
 ************ *** ******  *   .*

40. spacer 2.11|3604799|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009333 (Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence) position: , mismatch: 9, identity: 0.719

aagaatgtttaaatgggataaggacggcaact	CRISPR spacer
tagaatgtttaaaagggttaaggagtggcttt	Protospacer
 ************ *** ******  *   .*

41. spacer 2.12|3604859|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggaacagactgttgtgacggataataac	CRISPR spacer
cgcaggaacagaccgttctgacggtcaccggc	Protospacer
 ************.*** ****** .* ...*

42. spacer 2.12|3604859|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggaacagactgttgtgacggataataac	CRISPR spacer
cgcaggaacagaccgttctgacggtcaccggc	Protospacer
 ************.*** ****** .* ...*

43. spacer 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgccattgccggtaattcttacattaaaat	CRISPR spacer
aactttcttgacggtaatccttacattaaaag	Protospacer
  * .. *** *******.************ 

44. spacer 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgccattgccggtaattcttacattaaaat	CRISPR spacer
aactttcttgacggtaatccttacattaaaag	Protospacer
  * .. *** *******.************ 

45. spacer 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to MK408758 (Campylobacter phage CP20, complete genome) position: , mismatch: 9, identity: 0.719

ctcgccattgccggtaattcttacattaaaat	CRISPR spacer
aaccacgatgccgttaattctttcattaaaaa	Protospacer
  *  *. ***** ******** ******** 

46. spacer 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 9, identity: 0.719

ctcgccattgccggtaattcttacattaaaat	CRISPR spacer
aaccacgatgccgttaattctttcattaaaaa	Protospacer
  *  *. ***** ******** ******** 

47. spacer 2.13|3604919|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to FN667789 (Campylobacter phage CPt10, complete genome) position: , mismatch: 9, identity: 0.719

ctcgccattgccggtaattcttacattaaaat	CRISPR spacer
aaccacgatgccgttaattctttcattaaaaa	Protospacer
  *  *. ***** ******** ******** 

48. spacer 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

actgctttcattgtcatcttattaatctctct	CRISPR spacer
cctgcattcattttcatcttattatcggttat	Protospacer
 **** ****** *********** .  .* *

49. spacer 3.4|4570361|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041688 (Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

actgctttcattgtcatcttattaatctctct	CRISPR spacer
ttttttttcattttaatcttattaatcttaat	Protospacer
 .* .******* * *************.  *

50. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 10, identity: 0.688

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
atgcatatccatctctacatcaatggcagttc	Protospacer
*****************  ****.   *  . 

51. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 10, identity: 0.688

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
atgcatatccatctctacatcaatggcagttc	Protospacer
*****************  ****.   *  . 

52. spacer 2.1|3604199|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 10, identity: 0.688

atgcatatccatctctaattcaacttgacgcg	CRISPR spacer
atgcatatccatctctatgtcaatggcagttc	Protospacer
*****************  ****.   *  . 

53. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_048184 (Synechococcus phage S-CBP3, complete genome, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces) position: , mismatch: 10, identity: 0.688

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
ctgctaggaattgccatggctcatcagctact	Protospacer
   . *****.***** ***********. .*

54. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_020865 (Cyanophage KBS-P-1A genomic sequence) position: , mismatch: 10, identity: 0.688

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
cagccaggaattgccaaggctcatctgcgacc	Protospacer
 * . *****.************** **  ..

55. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to HQ633062 (Synechococcus phage S-CBP3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces) position: , mismatch: 10, identity: 0.688

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
ctgctaggaattgccatggctcatcagctact	Protospacer
   . *****.***** ***********. .*

56. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to HQ317389 (Synechococcus phage S-RIP2 genomic sequence) position: , mismatch: 10, identity: 0.688

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
cagccaggaattgccaaggctcatctgcgacc	Protospacer
 * . *****.************** **  ..

57. spacer 2.3|3604319|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NC_025461 (Synechococcus phage S-CBP3, complete genome) position: , mismatch: 10, identity: 0.688

aattaaggaactgccaaggctcatcagccttt	CRISPR spacer
ctgctaggaattgccatggctcatcagctact	Protospacer
   . *****.***** ***********. .*

58. spacer 2.7|3604559|32|NZ_CP007230|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023282 (Nostoc sp. CENA543 plasmid pCENA543b, complete sequence) position: , mismatch: 10, identity: 0.688

aaaccgcccagatttctcgcattgagcaaata	CRISPR spacer
aaactgcccagatttctcccattatttgtcaa	Protospacer
****.************* ****.  ..   *

59. spacer 3.7|4570542|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028344 (Vibrio parahaemolyticus isolate R13 plasmid pVpR13_19Kb, complete sequence) position: , mismatch: 10, identity: 0.688

cgtaatggctgcattgcttgggttttatgttg	CRISPR spacer
tgcttcttctgaattgcttgggttttctgttt	Protospacer
.*.  .  *** ************** **** 

60. spacer 3.7|4570542|32|NZ_CP007230|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028143 (Vibrio parahaemolyticus strain R14 plasmid pVpR14_20Kb, complete sequence) position: , mismatch: 10, identity: 0.688

cgtaatggctgcattgcttgggttttatgttg	CRISPR spacer
tgcttcttctgaattgcttgggttttctgttt	Protospacer
.*.  .  *** ************** **** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 422587 : 483183 49 Paramecium_bursaria_Chlorella_virus(14.29%) protease,integrase,tRNA,transposase attL 416570:416585|attR 487206:487221
DBSCAN-SWA_2 505236 : 545802 45 Sodalis_phage(37.5%) integrase,transposase attL 531343:531357|attR 539130:539144
DBSCAN-SWA_3 579284 : 611896 26 Shigella_phage(14.29%) holin,tail,transposase NA
DBSCAN-SWA_4 2072906 : 2152092 59 Staphylococcus_phage(10.0%) protease,integrase,tRNA,transposase attL 2066234:2066255|attR 2149624:2149645
DBSCAN-SWA_5 2985594 : 3060724 75 Enterobacterial_phage(12.77%) terminase,capsid,portal,holin,protease,tRNA,tail,head NA
DBSCAN-SWA_6 3195249 : 3240989 39 Pseudomonas_phage(25.0%) protease,tail,plate NA
DBSCAN-SWA_7 3453887 : 3512147 77 Burkholderia_phage(27.27%) plate,integrase,terminase,protease,holin,head attL 3467900:3467923|attR 3512366:3512389
DBSCAN-SWA_8 3761681 : 3808085 60 Shigella_phage(11.63%) plate,integrase,capsid,terminase,transposase,holin,tail attL 3759839:3759855|attR 3813021:3813037
DBSCAN-SWA_9 4336916 : 4472846 117 Escherichia_phage(29.27%) plate,coat,transposase,protease,tRNA,tail NA
DBSCAN-SWA_10 4477114 : 4488363 17 Escherichia_phage(16.67%) integrase attL 4479435:4479449|attR 4487907:4487921
DBSCAN-SWA_11 4791906 : 4799285 8 Escherichia_phage(83.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage