CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

359389 : 394857

environmental_Halophage(25.0%)

integrase,transposase

attL 387671:387730|attR 402468:403384

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023594086.1\|359389_361393_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_144347198.1\|362872_363214_-	hypothetical protein	NA	NA	NA	NA
WP_023594088.1\|363925_364111_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144347200.1\|364103_365363_+	DNA primase	H9YTV9	environmental_Halophage	2.1e-29	31.5
WP_023594089.1\|365731_365941_+	hypothetical protein	NA	NA	NA	NA
WP_023594090.1\|366012_367938_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_023594091.1\|367934_369257_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_023594092.1\|369253_370162_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_023594093.1\|370194_373410_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_080738680.1\|373454_374579_+	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_031627060.1\|374597_378833_+	AAA family ATPase	NA	NA	NA	NA
WP_144347202.1\|378765_380568_+	AAA family ATPase	NA	NA	NA	NA
WP_144347204.1\|380672_381101_-	hypothetical protein	NA	NA	NA	NA
WP_023594097.1\|381542_383180_-\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	7.4e-27	33.3
WP_023594098.1\|383471_384569_+\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	1.5e-60	38.4
WP_004541200.1\|384781_386302_-	hypothetical protein	NA	NA	NA	NA
WP_023594099.1\|386824_387679_-	hypothetical protein	NA	NA	NA	NA
387671:387730	attL	NA	NA	NA	NA
WP_023594100.1\|388636_389290_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_023594101.1\|389816_390395_-	hypothetical protein	NA	NA	NA	NA
WP_023594103.1\|391131_392580_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023594104.1\|392618_393212_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023872380.1\|393347_393590_-	hypothetical protein	NA	NA	NA	NA
WP_144347206.1\|393731_394857_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-56	43.5
402468:403384	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1647004 : 1665017

Leptospira_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115344488.1\|1647004_1648191_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.2e-48	38.4
WP_052167260.1\|1648259_1652708_+	hypothetical protein	NA	NA	NA	NA
WP_023595201.1\|1652707_1652992_+	hypothetical protein	NA	NA	NA	NA
WP_023595202.1\|1653250_1654501_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	41.7
WP_144347285.1\|1654762_1655883_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.0e-59	45.3
WP_023595205.1\|1655930_1656164_-	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_023595206.1\|1656291_1657998_+	hypothetical protein	NA	NA	NA	NA
WP_144347287.1\|1657981_1658323_+	hypothetical protein	NA	NA	NA	NA
WP_023595207.1\|1658726_1658894_+	hypothetical protein	NA	NA	NA	NA
WP_023595208.1\|1658929_1659217_+\|transposase	transposase	NA	NA	NA	NA
WP_023593909.1\|1659220_1660759_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.2e-44	36.8
WP_144347290.1\|1661237_1661567_+	hypothetical protein	NA	NA	NA	NA
WP_023595209.1\|1661720_1662476_+	hypothetical protein	NA	NA	NA	NA
WP_031627158.1\|1662526_1663645_+	hypothetical protein	NA	NA	NA	NA
WP_144347294.1\|1663909_1665017_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.3e-46	40.8

DBSCAN-SWA_3

2073149 : 2101096

Burkholderia_phage(50.0%)

holin,head,capsid,portal,tail,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023595576.1\|2073149_2073593_+	hypothetical protein	Q3HQZ3	Burkholderia_phage	7.4e-30	49.0
WP_023595578.1\|2073785_2074049_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023595579.1\|2074045_2074846_+	helix-turn-helix domain-containing protein	Q3HQZ6	Burkholderia_phage	3.8e-85	60.1
WP_023595580.1\|2074842_2075499_+	hypothetical protein	Q3HQZ7	Burkholderia_phage	2.3e-72	61.3
WP_023595582.1\|2075695_2076196_+	hypothetical protein	H2BDI1	Pseudomonas_virus	6.8e-16	34.6
WP_052167371.1\|2076350_2076689_+	DUF1064 domain-containing protein	A0A0U2C0S3	Paracoccus_phage	1.0e-15	47.7
WP_023595584.1\|2076685_2077036_+	hypothetical protein	NA	NA	NA	NA
WP_031627197.1\|2077298_2077709_+	DUF1364 family protein	Q6JIF7	Burkholderia_virus	3.9e-17	39.3
WP_023595587.1\|2078074_2078689_-	hypothetical protein	NA	NA	NA	NA
WP_023595588.1\|2078899_2079289_+	hypothetical protein	Q3HR06	Burkholderia_phage	5.4e-45	68.8
WP_023595589.1\|2079510_2080023_+\|terminase	terminase	Q3HQS6	Burkholderia_phage	2.2e-38	62.2
WP_023595590.1\|2080025_2081741_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	2.9e-271	80.4
WP_031627198.1\|2081748_2083059_+\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	2.5e-190	76.6
WP_023595592.1\|2083036_2083879_+\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	1.6e-121	80.7
WP_023595593.1\|2083881_2085162_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	3.4e-184	75.3
WP_023595594.1\|2085231_2085504_+	hypothetical protein	Q3HQT1	Burkholderia_phage	5.4e-07	61.4
WP_023595595.1\|2085507_2085849_+\|head,tail	phage gp6-like head-tail connector protein	Q3HQT2	Burkholderia_phage	4.3e-38	71.7
WP_023595596.1\|2085848_2086196_+\|head	phage head closure protein	Q6JIM4	Burkholderia_virus	3.1e-07	41.3
WP_023595597.1\|2086188_2086542_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_023595598.1\|2086546_2086972_+	hypothetical protein	NA	NA	NA	NA
WP_023595599.1\|2086981_2087356_+	hypothetical protein	NA	NA	NA	NA
WP_023595600.1\|2087370_2087709_+	hypothetical protein	NA	NA	NA	NA
WP_023595601.1\|2087701_2088136_+	hypothetical protein	G3ENA5	Psychrobacter_phage	3.9e-07	33.1
WP_023595602.1\|2088128_2090945_+\|tail	phage tail tape measure protein	Q3HQT9	Burkholderia_phage	7.3e-30	37.9
WP_023595603.1\|2090941_2091301_+	hypothetical protein	NA	NA	NA	NA
WP_023595604.1\|2091300_2091777_+	DUF1833 family protein	I7GYA2	Xanthomonas_virus	2.8e-11	31.6
WP_023595605.1\|2091776_2092163_+	hypothetical protein	NA	NA	NA	NA
WP_052167266.1\|2092153_2095834_+	hypothetical protein	A5H1M5	Xanthomonas_virus	9.0e-81	29.4
WP_023595607.1\|2095892_2096897_+	hypothetical protein	NA	NA	NA	NA
WP_023595608.1\|2096899_2097307_+	hypothetical protein	NA	NA	NA	NA
WP_158443196.1\|2097406_2099428_+	acyltransferase family protein	A0A1R3Y5Q6	Salmonella_virus	3.0e-78	37.7
WP_023595610.1\|2099531_2099873_+	hypothetical protein	Q6J1Q7	Burkholderia_virus	2.5e-33	69.1
WP_080738845.1\|2099872_2100151_+\|holin	holin	Q6J1Q6	Burkholderia_virus	4.2e-23	57.6
WP_023595612.1\|2100137_2100614_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	8.1e-51	63.1
WP_080738723.1\|2100610_2101096_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	3.2e-26	47.8

DBSCAN-SWA_4

3045482 : 3069167

Burkholderia_phage(43.48%)

holin,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023596421.1\|3045482_3045866_-	DUF1353 domain-containing protein	A0A1L2CVI8	Pectobacterium_phage	1.6e-17	45.0
WP_023596422.1\|3045862_3046291_-	hypothetical protein	NA	NA	NA	NA
WP_144347351.1\|3046320_3046533_+	hypothetical protein	NA	NA	NA	NA
WP_023596424.1\|3046612_3046810_-	hypothetical protein	NA	NA	NA	NA
WP_031627291.1\|3046806_3047319_-	hypothetical protein	NA	NA	NA	NA
WP_023596426.1\|3047323_3047620_-\|holin	holin	C7BGD7	Burkholderia_phage	4.6e-20	52.8
WP_023596427.1\|3047634_3048147_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	2.2e-54	67.1
WP_023596428.1\|3048195_3048702_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_023596429.1\|3048712_3049798_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	3.4e-20	31.6
WP_023596430.1\|3049855_3050518_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	9.8e-87	69.1
WP_023596431.1\|3050519_3051701_-	hypothetical protein	A9YX12	Burkholderia_phage	1.1e-144	70.0
WP_023874031.1\|3051697_3052045_-	hypothetical protein	A9YX11	Burkholderia_phage	2.9e-37	69.2
WP_023596433.1\|3052047_3052794_-	hypothetical protein	A9YX06	Burkholderia_phage	1.0e-103	78.6
WP_023596434.1\|3052806_3053214_+	hypothetical protein	NA	NA	NA	NA
WP_023596436.1\|3054190_3054505_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.1e-15	41.4
WP_023596437.1\|3054506_3055088_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.1e-22	36.3
WP_031627292.1\|3055084_3056887_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	3.0e-45	39.2
WP_023596438.1\|3057067_3057577_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	8.5e-14	34.8
WP_023596439.1\|3057576_3058017_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	4.1e-33	49.3
WP_023596440.1\|3058029_3059505_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.7e-107	46.8
WP_023596441.1\|3059570_3060254_+	hypothetical protein	NA	NA	NA	NA
WP_023596442.1\|3060246_3060813_-	hypothetical protein	A9YX29	Burkholderia_phage	1.5e-51	55.2
WP_023596443.1\|3060816_3061188_-	hypothetical protein	A9YX28	Burkholderia_phage	5.0e-48	76.4
WP_023596444.1\|3061190_3061778_-	hypothetical protein	A9YX26	Burkholderia_phage	1.4e-28	43.4
WP_023596445.1\|3061810_3062194_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	6.1e-41	67.5
WP_023596446.1\|3062233_3062584_-	hypothetical protein	NA	NA	NA	NA
WP_023596447.1\|3062595_3063633_-	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	1.1e-124	66.4
WP_023596448.1\|3063644_3064139_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	1.4e-32	51.2
WP_031627293.1\|3064154_3065441_-	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	1.6e-64	42.5
WP_162473457.1\|3065450_3066203_-\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	1.8e-81	64.0
WP_023596452.1\|3067619_3069167_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.2e-112	45.9

DBSCAN-SWA_5

3526555 : 3531954

Burkholderia_virus(50.0%)

integrase

attL 3516748:3516763|attR 3539922:3539937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3516748:3516763	attL	NA	NA	NA	NA
WP_031627339.1\|3526555_3526852_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	2.7e-28	62.2
WP_023596882.1\|3526855_3527170_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	2.6e-29	73.1
WP_023596883.1\|3527179_3527971_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	6.0e-123	77.9
WP_144347376.1\|3528297_3528684_-	hypothetical protein	NA	NA	NA	NA
WP_144347484.1\|3528668_3529076_-	glycoside hydrolase family protein	A0A0U4JP67	Pseudomonas_phage	3.6e-31	54.5
WP_144347378.1\|3529136_3529322_-	hypothetical protein	NA	NA	NA	NA
WP_031627340.1\|3529535_3529853_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.5e-16	49.5
WP_023596888.1\|3530040_3531954_-	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	4.6e-20	27.9
3539922:3539937	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage