CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010804	Candidatus Liberibacter asiaticus strain A4 chromosome, complete genome	2 crisprs	DEDDh,cas3	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010804_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010804_1

204424-204554

Orphan

Consensus_repeat	Method
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010804_1

>merge|NZ_CP010804|1|204424-204554|CRISPRCasFinder
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTAATAGTCATGGAAAAAGAAACGTCGGTAAAAATCGATAAAACCAAACAAAGTATACGATATTTTACCTGCTCAGGAGGCTACGTCTA

>NZ_CP010804|1|1|204424-204554|CRISPRCasFinder
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTA	ATAGTCATGGAAAAAGAAACGTCGGTAAAAATCGATAAAAC
CAAACAAAGTATACGATATTTTACCTGCTCAGGAGGCTACGTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010804.2\|WP_012778532.1\|197932_198616_-\|RlmE-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223370
NZ_CP010804.2\|WP_012778547.1\|216954_217956_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP010804.2\|WP_012778535.1\|200788_203206_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP010804.2\|WP_012778541.1\|208513_209335_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273953
NZ_CP010804.2\|WP_012778543.1\|211705_211891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_012778538.1\|204953_205157_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP010804.2\|WP_012778542.1\|209592_211068_-\|NTP/NDP-exchange-transporter	unknown	unknown	gnl\|CDD\|367401
NZ_CP010804.2\|WP_012778527.1\|193108_193975_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NZ_CP010804.2\|WP_012778536.1\|203218_204319_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP010804.2\|WP_012778529.1\|194383_194743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP010804.2\|WP_012778540.1\|206123_207944_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP010804.2\|WP_012778546.1\|214124_216797_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP010804.2\|WP_012778533.1\|199183_200239_-\|porin	unknown	unknown	gnl\|CDD\|308243
NZ_CP010804.2\|WP_031935129.1\|212566_213790_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP010804.2\|WP_012778528.1\|194008_194188_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP010804.2\|WP_012778531.1\|196329_196698_+\|response-regulator	unknown	unknown	gnl\|CDD\|381144
NZ_CP010804.2\|WP_076778740.1\|205304_205871_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP010804.2\|WP_012778530.1\|195263_195797_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|223750
NZ_CP010804.2\|WP_012778544.1\|212008_212434_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP010804.2\|WP_012778526.1\|192044_193052_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845

Protein	Function_ID	Function_description	E-value
NZ_CP010804.2\|WP_012778532.1\|197932_198616_-\|RlmE-family-RNA-methyltransferase	gnl\|CDD\|223370	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis].	1.90818e-88
NZ_CP010804.2\|WP_012778535.1\|200788_203206_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP010804.2\|WP_012778541.1\|208513_209335_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	9.91533e-18
NZ_CP010804.2\|WP_012778547.1\|216954_217956_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	3.45219e-152
NZ_CP010804.2\|WP_012778538.1\|204953_205157_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	4.1277e-19
NZ_CP010804.2\|WP_012778542.1\|209592_211068_-\|NTP/NDP-exchange-transporter	gnl\|CDD\|367401	pfam03219, TLC, TLC ATP/ADP transporter.	0
NZ_CP010804.2\|WP_012778527.1\|193108_193975_+\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	1.46101e-74
NZ_CP010804.2\|WP_012778536.1\|203218_204319_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP010804.2\|WP_012778529.1\|194383_194743_-\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	0.00127825
NZ_CP010804.2\|WP_012778540.1\|206123_207944_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP010804.2\|WP_012778546.1\|214124_216797_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP010804.2\|WP_012778533.1\|199183_200239_-\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	7.18373e-07
NZ_CP010804.2\|WP_031935129.1\|212566_213790_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	3.31577e-179
NZ_CP010804.2\|WP_012778528.1\|194008_194188_-\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	3.83493e-12
NZ_CP010804.2\|WP_012778531.1\|196329_196698_+\|response-regulator	gnl\|CDD\|381144	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains. Two-component systems (TCSs), consisting of a sensor and a response regulator, are used by bacteria to adapt to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis and membrane transport. Response regulators share the common phosphoacceptor REC domain and differ output domains such as DNA, RNA, ligand, and protein-binding, or enzymatic domain. CpdR is a stand-alone REC protein. CckA is a sensor histidine kinase containing N-terminal PAS domains and a C-terminal REC domain. CpdR and CckA are components of a regulatory phosphorelay system (composed of CckA, ChpT, CtrA and CpdR) that controls Brucella abortus cell growth, division, and intracellular survival inside mammalian host cells. CckA autophosphorylates in the presence of ATP and transfers a phosphoryl group to the conserved aspartic acid residue on its C-terminal REC domain, which is relayed to the ChpT phosphotransferase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.60094e-42
NZ_CP010804.2\|WP_076778740.1\|205304_205871_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	3.54984e-65
NZ_CP010804.2\|WP_012778530.1\|195263_195797_-\|peroxiredoxin	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.54072e-71
NZ_CP010804.2\|WP_012778544.1\|212008_212434_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.53947e-49
NZ_CP010804.2\|WP_012778526.1\|192044_193052_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0

>NZ_CP010804.2|WP_012778536.1|203218_204319_-|phenylalanine--tRNA-ligase-subunit-alpha
MTECNVFEDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLFSRLA
>NZ_CP010804.2|WP_012778535.1|200788_203206_-|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLRSS
>NZ_CP010804.2|WP_012778533.1|199183_200239_-|porin
MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF
>NZ_CP010804.2|WP_012778532.1|197932_198616_-|RlmE-family-RNA-methyltransferase
MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK
>NZ_CP010804.2|WP_012778531.1|196329_196698_+|response-regulator
MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN
>NZ_CP010804.2|WP_012778530.1|195263_195797_-|peroxiredoxin
MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK
>NZ_CP010804.2|WP_012778529.1|194383_194743_-|hypothetical-protein
MPAIIQTVKSIIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDLAIMMAQWMFRVLEKI
>NZ_CP010804.2|WP_012778528.1|194008_194188_-|hypothetical-protein
MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD
>NZ_CP010804.2|WP_012778527.1|193108_193975_+|lytic-murein-transglycosylase
MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT
>NZ_CP010804.2|WP_012778526.1|192044_193052_+|aspartate-semialdehyde-dehydrogenase
MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA
>NZ_CP010804.2|WP_012778538.1|204953_205157_-|50S-ribosomal-protein-L35
MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNGI
>NZ_CP010804.2|WP_076778740.1|205304_205871_-|translation-initiation-factor-IF-3
MAIRKVCRSSKLDVGSKDNYRVNDEVLLHNPGVIKLVTADGQNANEISASEALQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIMILSSKCV
>NZ_CP010804.2|WP_012778540.1|206123_207944_+|elongation-factor-4
MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKTDNE
>NZ_CP010804.2|WP_012778541.1|208513_209335_+|methyltransferase-domain-containing-protein
MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE
>NZ_CP010804.2|WP_012778542.1|209592_211068_-|NTP/NDP-exchange-transporter
MAHNQKILSVLLKIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISKE
>NZ_CP010804.2|WP_012778543.1|211705_211891_-|hypothetical-protein
MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYRR
>NZ_CP010804.2|WP_012778544.1|212008_212434_-|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHALHM
>NZ_CP010804.2|WP_031935129.1|212566_213790_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
>NZ_CP010804.2|WP_012778546.1|214124_216797_+|preprotein-translocase-subunit-SecA
MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLPYIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL
>NZ_CP010804.2|WP_012778547.1|216954_217956_+|UDP-glucose-4-epimerase-GalE
MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE

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Crispr_ID: NZ_CP010804_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010804_2

1219364-1219451

Orphan

Consensus_repeat	Method
GGAATTCAAAAAGTTCGTAGCAAGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010804_2

>merge|NZ_CP010804|2|1219364-1219451|CRISPRCasFinder
GGAATTCAAAAAGTTCGTAGCAAGGGGGTGGCAAAACACCACCCCCTTAAGACTGAAGGCGGAATACAAAAAGTTCGTAGCAAGGGGG

>NZ_CP010804|2|2|1219364-1219451|CRISPRCasFinder
GGAATTCAAAAAGTTCGTAGCAAGGGGG	TGGCAAAACACCACCCCCTTAAGACTGAAGGC
GGAATACAAAAAGTTCGTAGCAAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010804.2\|WP_055688163.1\|1213181_1214732_-\|terminase	unknown	unknown	gnl\|CDD\|367410
NZ_CP010804.2\|WP_031935101.1\|1222469_1222859_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_031935097.1\|1217872_1218265_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236361
NZ_CP010804.2\|WP_031935103.1\|1224457_1225624_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NZ_CP010804.2\|WP_016062867.1\|1211559_1213179_-\|phage-related-head-to-tail-joining-protein	unknown	unknown	gnl\|CDD\|378829
NZ_CP010804.2\|WP_051927357.1\|1218600_1218843_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_015453087.1\|1215266_1215755_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP010804.2\|WP_031935112.1\|1225794_1226583_+\|antirepressor	unknown	unknown	gnl\|CDD\|226144
NZ_CP010804.2\|WP_031935099.1\|1219704_1220049_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369525
NZ_CP010804.2\|WP_015453060.1\|1222876_1223083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_155714017.1\|1216804_1217350_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP010804.2\|WP_015453045.1\|1211290_1211563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_155714018.1\|1220096_1222469_-\|PriCT-2-domain-containing-protein	unknown	unknown	gnl\|CDD\|273716
NZ_CP010804.2\|WP_031935104.1\|1226601_1227252_+\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NZ_CP010804.2\|WP_012778343.1\|1224006_1224330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_155714019.1\|1223079_1223349_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_015453053.1\|1218401_1218608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_015453055.1\|1218843_1219176_+\|intrrupted-gp229,-phage-associated-protein	unknown	unknown	gnl\|CDD\|224129
NZ_CP010804.2\|WP_031935096.1\|1217568_1217790_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010804.2\|WP_015453061.1\|1223545_1223917_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010804.2\|WP_055688163.1\|1213181_1214732_-\|terminase	gnl\|CDD\|367410	pfam03237, Terminase_6, Terminase-like family. This family represents a group of terminase proteins.	3.26e-05
NZ_CP010804.2\|WP_031935097.1\|1217872_1218265_+\|hypothetical-protein	gnl\|CDD\|236361	PRK08999, PRK08999, Nudix family hydrolase.	0.00191391
NZ_CP010804.2\|WP_031935103.1\|1224457_1225624_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	1.96963e-87
NZ_CP010804.2\|WP_016062867.1\|1211559_1213179_-\|phage-related-head-to-tail-joining-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	7.03012e-75
NZ_CP010804.2\|WP_031935104.1\|1226601_1227252_+\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	2.33757e-27
NZ_CP010804.2\|WP_015453087.1\|1215266_1215755_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.00952243
NZ_CP010804.2\|WP_031935112.1\|1225794_1226583_+\|antirepressor	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	1.91408e-39
NZ_CP010804.2\|WP_015453055.1\|1218843_1219176_+\|intrrupted-gp229,-phage-associated-protein	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	3.6592e-06
NZ_CP010804.2\|WP_155714017.1\|1216804_1217350_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.95617e-09
NZ_CP010804.2\|WP_031935099.1\|1219704_1220049_-\|hypothetical-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	0.00567443
NZ_CP010804.2\|WP_155714018.1\|1220096_1222469_-\|PriCT-2-domain-containing-protein	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	1.3176e-40

>NZ_CP010804.2|WP_015453055.1|1218843_1219176_+|intrrupted-gp229,-phage-associated-protein
MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE
>NZ_CP010804.2|WP_051927357.1|1218600_1218843_+|hypothetical-protein
MIKAKEPLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFNDVKKGALGGFIEDEDNLCHSGSC
>NZ_CP010804.2|WP_015453053.1|1218401_1218608_+|hypothetical-protein
MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLTKGAKLSSD
>NZ_CP010804.2|WP_031935097.1|1217872_1218265_+|hypothetical-protein
MGQLKRHYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDYYASQI
>NZ_CP010804.2|WP_031935096.1|1217568_1217790_+|hypothetical-protein
MEIDLQEKFKNLLQEDIKDYLDKCHKSFYSPETYPNMYREQEQKLLDEIIELRWKFAKEISSKTATQACPKPQ
>NZ_CP010804.2|WP_155714017.1|1216804_1217350_-|helix-turn-helix-transcriptional-regulator
MLITPEIRRNWEEVGMRIRDIRKSKGKTLEELAIKAGTIKSAINSFEKGRNPTSINYALFLRNEFGASFDWIYDGETILKVYKPKTLKGDVLDPIAIGLRLKEIREHLGLNRVEFGKLVGLPCALISMYESGKRTPRITTAQNIKRAIGKPLDWIYFGDEIIIPKSIKRAKANQSSRKAKE
>NZ_CP010804.2|WP_015453087.1|1215266_1215755_-|transposase
MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD
>NZ_CP010804.2|WP_055688163.1|1213181_1214732_-|terminase
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEAIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQYIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRKISSLINRYNPDAIVIDGNGIGGTVVSYLLNMHHISVEVILGQRRSTEPEQYHNLRAELYDLMRSAITGGLQLPDDCPDLINELKSIKSISDTLGRLLIEKKRQGRSEFGVRSPDFVDALCYTFAVDPPRKDNPLYQGQDISEYEALDTGFNYEAYGM
>NZ_CP010804.2|WP_016062867.1|1211559_1213179_-|phage-related-head-to-tail-joining-protein
MVDKVGLKKEDNNNKEFIKKLIARFESLKAQRSEIEPIRQEIIDLVCPYRGKASEDKKIWDTTATSASDKLASLLHNLITPFGSRWHGLVAPDPQSGSFFASQENKLIREQCDHFVMELFAQRELPASGFNLCLKDFYTEVVLFGMGCFYVSEREGGGLRYISVPVSSIVCSANHENVVDTVFEEFSLTPENVAKKWGYDALSDKMKEDLDRSDPQKYEFFQAVFPDKEDDYEGYKKVIVSIDENRIIEEGYHRVMPYIVGRYEASPSNPFGYSPTHKALPSIRRLNALSASVSLYSEKALNPAVLTSEDTRGKTFSTKPKTVNHGWMDRQGRPRAVPFFTGSDARPSHEEMQRLQMQIRELYLLDLFQVLADRASRSATESMEKTLEKGIFISAIVGGLQAEFVGSMVKREIDILYQDQGDIRGLGKDLKVSYTSPLYKYQKAEELNGIVQGIRVNAEIASMTGDPTPLMMFNPYLCGKYAADGSGVPEVLVLSEEDTKQKLIEKQKQAEASQMKQLTMEESIKTGGAIAQDRAKGEV
>NZ_CP010804.2|WP_015453045.1|1211290_1211563_-|hypothetical-protein
MIKGFDEVEKAEKVEQVRRYKSVFATFEGRWVLLDIMREGGLLATELSNDPIALARREGKRTIALYITDLIALEAEELISAYRELEQMEQ
>NZ_CP010804.2|WP_031935099.1|1219704_1220049_-|hypothetical-protein
MEKTAVRQKVQRDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGILLKLSSH
>NZ_CP010804.2|WP_155714018.1|1220096_1222469_-|PriCT-2-domain-containing-protein
MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFASLFYHHRKLIPDGLLASRFSDAYNKAMFSVFKSGHFLYASDIKAWYKRDENNHYIWRITDAKIEGYIMEFLVSQEKDSFNLCETIENEDGTKKHPRLLYLKTYEKSKACEQSKSRSTANALESKSQFHITSDFFDANFRYIGEKDGILDLETGQRITPTEELYITKSTGTPFVEGESSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYALEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVDDNNNIIDFKR
>NZ_CP010804.2|WP_031935101.1|1222469_1222859_-|hypothetical-protein
MERKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKCREYRHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPIEELIYKRS
>NZ_CP010804.2|WP_015453060.1|1222876_1223083_-|hypothetical-protein
MNTVKLGVKHFDTRKRGRTTEIRADGWMKEDNIARLSVVVSVAGETTDEEKLREYKEFVISAFAKAIS
>NZ_CP010804.2|WP_155714019.1|1223079_1223349_-|hypothetical-protein
MTNTPWNGTKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVEKRERIKNSSRSDNPDDDMCEVCQ
>NZ_CP010804.2|WP_015453061.1|1223545_1223917_+|hypothetical-protein
MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAVDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYANQI
>NZ_CP010804.2|WP_012778343.1|1224006_1224330_+|hypothetical-protein
MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
>NZ_CP010804.2|WP_031935103.1|1224457_1225624_+|DUF2800-domain-containing-protein
MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNNAQWIIADFKYGAGVPVNAENNPQLMLYACGALHLFADVMGKPETITMTILQPRIKTSDPIKEWTISVAELEAKAQEFRTKGQQALKLKTKRFIPFDSYGVDENACRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVIT
>NZ_CP010804.2|WP_031935112.1|1225794_1226583_+|antirepressor
MSTITPFEFESNKIRTIVDKDQNIWFVAKDVAVALGYERPNNAINAHCKGALKRGTLKTEGGTQKVRIIAEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVEAPKLRATSASTVLRVHKHLEELAKQAGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYIPTPKGEEYGGKMCDVPMHHVEGSTQSLKWNSSLLVPYLQNEFNNNQHL
>NZ_CP010804.2|WP_031935104.1|1226601_1227252_+|DUF2815-family-protein
MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKTDTKQINAVEACLKTAVTEIFPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLLVDRQAQPVSNPREVFYAGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASPKSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	KX879602	Liberibacter phage HHCA1-2, complete genome	22504-22535	0	1.0
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	HQ377372	Liberibacter phage SC1, complete genome	27015-27046	0	1.0
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	JF773396	Liberibacter phage FP2, complete genome	27655-27686	0	1.0
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	NC_019550	Liberibacter phage SC2, complete genome	22485-22516	0	1.0
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	KY661963	Liberibacter phage P-JXGC-3, complete genome	18455-18486	0	1.0
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	HQ377372	Liberibacter phage SC1, complete genome	33586-33617	3	0.906
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	JF773396	Liberibacter phage FP2, complete genome	34246-34277	3	0.906
NZ_CP010804_2	2.1\|1219392\|32\|NZ_CP010804\|CRISPRCasFinder	1219392-1219423	32	NC_019550	Liberibacter phage SC2, complete genome	29076-29107	3	0.906

1. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

2. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

3. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

4. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

5. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to KY661963 (Liberibacter phage P-JXGC-3, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

6. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

7. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

8. spacer 2.1|1219392|32|NZ_CP010804|CRISPRCasFinder matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1187149 : 1229591

Liberibacter_phage(100.0%)

head,terminase,tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015453018.1\|1187149_1187851_-	PriCT-2 domain-containing protein	A0A1L2K1I3	Liberibacter_phage	5.7e-77	59.3
WP_015453019.1\|1187876_1188374_+	DUF2800 domain-containing protein	A0A1L2K1I9	Liberibacter_phage	4.4e-31	43.0
WP_015453020.1\|1188378_1188975_+	DUF2815 family protein	A0A1L2K1I5	Liberibacter_phage	2.2e-29	43.7
WP_015824993.1\|1188977_1191005_+	DNA polymerase	E7DUM6	Liberibacter_phage	3.9e-203	56.3
WP_015824994.1\|1191001_1191298_+	nuclease	A0A220A2X3	Liberibacter_phage	2.4e-21	55.9
WP_040055333.1\|1191288_1192671_+	DEAD/DEAH box helicase	A0A1L2K1J1	Liberibacter_phage	4.2e-233	87.0
WP_012778351.1\|1192663_1193023_+	DNA ligase	A0A1L2K1J5	Liberibacter_phage	3.3e-65	100.0
WP_015453025.1\|1193024_1193597_+	guanylate kinase	A0A1L2K1J4	Liberibacter_phage	3.9e-108	100.0
WP_031935107.1\|1193641_1194055_+	hypothetical protein	E7DUN1	Liberibacter_phage	3.5e-34	88.4
WP_015453028.1\|1194900_1195374_-	hypothetical protein	A0A1L2K1K3	Liberibacter_phage	1.5e-84	100.0
WP_031935143.1\|1195370_1195643_-	hypothetical protein	A0A1L2K1J8	Liberibacter_phage	2.5e-44	100.0
WP_174234026.1\|1195730_1195886_-	hypothetical protein	E7DUN5	Liberibacter_phage	2.9e-18	100.0
WP_016062880.1\|1196210_1197155_+	hypothetical protein	A0A1L2K1J7	Liberibacter_phage	2.5e-152	100.0
WP_016062852.1\|1197175_1197652_-	hypothetical protein	A0A1L2K1F9	Liberibacter_phage	1.5e-84	100.0
WP_015453034.1\|1197648_1197921_-	hypothetical protein	A0A1L2K1G2	Liberibacter_phage	1.9e-44	100.0
WP_080723996.1\|1197913_1199098_-	hypothetical protein	A0A1L2K1F8	Liberibacter_phage	1.3e-201	100.0
WP_031935144.1\|1199094_1201524_-	hypothetical protein	A0A1L2K1G1	Liberibacter_phage	0.0e+00	100.0
WP_031935145.1\|1201523_1202747_-	hypothetical protein	A0A1L2K1G0	Liberibacter_phage	3.3e-229	100.0
WP_016062858.1\|1202730_1204992_-	hypothetical protein	E7DUJ6	Liberibacter_phage	0.0e+00	100.0
WP_155714016.1\|1205483_1207208_-	hypothetical protein	A0A1L2K1G5	Liberibacter_phage	0.0e+00	100.0
WP_031935147.1\|1207214_1208987_-	hypothetical protein	A0A1L2K1R5	Liberibacter_phage	0.0e+00	100.0
WP_051044096.1\|1208979_1209498_-	hypothetical protein	A0A1L2K5S2	Liberibacter_phage	1.1e-96	100.0
WP_031935148.1\|1209494_1210526_-	hypothetical protein	A0A1L2K1H1	Liberibacter_phage	2.6e-195	100.0
WP_016062866.1\|1210538_1211279_-	hypothetical protein	A0A1L2K1H4	Liberibacter_phage	2.1e-130	100.0
WP_015453045.1\|1211290_1211563_-	hypothetical protein	A0A1L2K1G8	Liberibacter_phage	1.5e-41	100.0
WP_016062867.1\|1211559_1213179_-\|head,tail	phage-related head-to-tail joining protein	A0A1L2K1H0	Liberibacter_phage	7.7e-311	100.0
WP_055688163.1\|1213181_1214732_-\|terminase	terminase	E7DUK7	Liberibacter_phage	4.3e-311	99.0
WP_015453087.1\|1215266_1215755_-\|transposase	transposase	E7DUK8	Liberibacter_phage	9.4e-87	100.0
WP_155714017.1\|1216804_1217350_-	helix-turn-helix transcriptional regulator	A0A1L2K1H9	Liberibacter_phage	3.2e-99	100.0
WP_031935096.1\|1217568_1217790_+	hypothetical protein	A0A1L2K1H5	Liberibacter_phage	2.9e-35	100.0
WP_031935097.1\|1217872_1218265_+	hypothetical protein	A0A1L2K1R7	Liberibacter_phage	7.9e-68	100.0
WP_015453053.1\|1218401_1218608_+	hypothetical protein	A0A1L2K5T2	Liberibacter_phage	9.0e-31	100.0
WP_051927357.1\|1218600_1218843_+	hypothetical protein	E7DUL3	Liberibacter_phage	1.2e-31	100.0
WP_015453055.1\|1218843_1219176_+	intrrupted gp229, phage associated protein	A0A1L2K1I0	Liberibacter_phage	3.6e-05	100.0
WP_031935099.1\|1219704_1220049_-	hypothetical protein	A0A1L2K1I2	Liberibacter_phage	1.7e-18	100.0
WP_155714018.1\|1220096_1222469_-	PriCT-2 domain-containing protein	A0A1L2K1I3	Liberibacter_phage	0.0e+00	100.0
WP_031935101.1\|1222469_1222859_-	hypothetical protein	A0A1L2K1H8	Liberibacter_phage	4.3e-26	100.0
WP_015453060.1\|1222876_1223083_-	hypothetical protein	A0A1L2K1I8	Liberibacter_phage	2.6e-30	100.0
WP_155714019.1\|1223079_1223349_-	hypothetical protein	A0A1L2K1I4	Liberibacter_phage	4.6e-43	100.0
WP_015453061.1\|1223545_1223917_+	hypothetical protein	A0A1L2K1S7	Liberibacter_phage	1.5e-63	100.0
WP_012778343.1\|1224006_1224330_+	hypothetical protein	A0A1L2K5U1	Liberibacter_phage	1.7e-52	100.0
WP_031935103.1\|1224457_1225624_+	DUF2800 domain-containing protein	A0A1L2K1I9	Liberibacter_phage	4.1e-221	100.0
WP_031935112.1\|1225794_1226583_+	antirepressor	A0A1L2K1I7	Liberibacter_phage	1.6e-147	100.0
WP_031935104.1\|1226601_1227252_+	DUF2815 family protein	A0A1L2K1I5	Liberibacter_phage	2.1e-121	100.0
WP_015453065.1\|1227255_1229283_+	DNA polymerase from bacteriophage origin	A0A1L2K1J0	Liberibacter_phage	0.0e+00	100.0
WP_031935106.1\|1229279_1229591_+	VRR-NUC domain-containing protein	A0A1L2K1J3	Liberibacter_phage	6.1e-55	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010804

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection