CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006823	Helicobacter pylori oki154 chromosome, complete genome	3 crisprs	cas14j,cas3,DEDDh	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP006823

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006823_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006823_1

126280-126366

Orphan

Consensus_repeat	Method
CCCACTCTTGTTTGTCTTTTGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006823_1

>merge|NZ_CP006823|1|126280-126366|CRISPRCasFinder
CCCACTCTTGTTTGTCTTTTGTTTCTCTTGTTCCAATTTTATCTGATTATTAGCGAGTTCCACCCCACTCTTATTTGTCTTTTGTTT

>NZ_CP006823|1|1|126280-126366|CRISPRCasFinder
CCCACTCTTGTTTGTCTTTTGTTT	CTCTTGTTCCAATTTTATCTGATTATTAGCGAGTTCCAC
CCCACTCTTATTTGTCTTTTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006823.1\|WP_001125542.1\|132103_132298_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP006823.1\|WP_025313563.1\|113579_114158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_001264172.1\|132394_132745_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP006823.1\|WP_025366677.1\|134997_135867_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025287784.1\|134159_134591_+\|DUF1104-domain-containing-protein	unknown	unknown	gnl\|CDD\|368949
NZ_CP006823.1\|WP_000046341.1\|137849_139091_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP006823.1\|WP_038419362.1\|117815_118454_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180279
NZ_CP006823.1\|WP_015428569.1\|116189_116765_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|184538
NZ_CP006823.1\|WP_025366674.1\|118782_120666_-\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NZ_CP006823.1\|WP_025366673.1\|118474_118771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025313564.1\|116764_117595_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|235174
NZ_CP006823.1\|WP_025366676.1\|126884_129323_-\|pyruvate,-water-dikinase	unknown	unknown	gnl\|CDD\|235809
NZ_CP006823.1\|WP_025366675.1\|122437_124648_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP006823.1\|WP_000089209.1\|131511_132123_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|129272
NZ_CP006823.1\|WP_000750191.1\|132944_133805_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP006823.1\|WP_025222409.1\|129676_131515_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NZ_CP006823.1\|WP_025313568.1\|120728_122273_-\|flagellin-B	unknown	unknown	gnl\|CDD\|237440
NZ_CP006823.1\|WP_025222408.1\|124640_125567_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NZ_CP006823.1\|WP_015428568.1\|114296_116159_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP006823.1\|WP_025366678.1\|139271_140621_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662

Protein	Function_ID	Function_description	E-value
NZ_CP006823.1\|WP_001264172.1\|132394_132745_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	7.38173e-61
NZ_CP006823.1\|WP_025287784.1\|134159_134591_+\|DUF1104-domain-containing-protein	gnl\|CDD\|368949	pfam06518, DUF1104, Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found largely in Helicobacter pylori.	1.87868e-24
NZ_CP006823.1\|WP_000046341.1\|137849_139091_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	8.85621e-178
NZ_CP006823.1\|WP_038419362.1\|117815_118454_+\|hypothetical-protein	gnl\|CDD\|180279	PRK05834, PRK05834, hypothetical protein; Provisional.	1.24115e-108
NZ_CP006823.1\|WP_015428569.1\|116189_116765_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|184538	PRK14149, PRK14149, heat shock protein GrpE; Provisional.	5.45356e-104
NZ_CP006823.1\|WP_025366674.1\|118782_120666_-\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP006823.1\|WP_001125542.1\|132103_132298_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.81419e-15
NZ_CP006823.1\|WP_025313564.1\|116764_117595_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|235174	PRK03911, PRK03911, HrcA family transcriptional regulator.	5.08463e-122
NZ_CP006823.1\|WP_025366676.1\|126884_129323_-\|pyruvate,-water-dikinase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_CP006823.1\|WP_025366675.1\|122437_124648_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP006823.1\|WP_000089209.1\|131511_132123_+\|translation-initiation-factor-IF-3	gnl\|CDD\|129272	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3. infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors].	4.41564e-75
NZ_CP006823.1\|WP_000750191.1\|132944_133805_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.10326e-49
NZ_CP006823.1\|WP_025222408.1\|124640_125567_+\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	4.83772e-88
NZ_CP006823.1\|WP_025313568.1\|120728_122273_-\|flagellin-B	gnl\|CDD\|237440	PRK13588, PRK13588, flagellin B; Provisional.	0
NZ_CP006823.1\|WP_025222409.1\|129676_131515_+\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP006823.1\|WP_015428568.1\|114296_116159_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP006823.1\|WP_025366678.1\|139271_140621_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0

>NZ_CP006823.1|WP_025222408.1|124640_125567_+|radical-SAM-protein
MAKENLPIVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGKAKPIERMEEVIEVKTLISAIQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDIDKILEGILSFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKKINTARVDLSTIDRPSSFKAPKLSEDELLKCSLFFEGLCVSLPKRSIAQAKKLISCGIDELLALISRRPLSAEEAPLILDPNAFKHLETLLNHKQITIKKVGSLEFYCAF
>NZ_CP006823.1|WP_025366675.1|122437_124648_+|type-I-DNA-topoisomerase
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGELESYPRIVFHEITQNAILNALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDREREIKAFKPLTYFTLDAYFEPHLEVQLISYKGNKLKAQELIDGKKAQEIKNELEKESYTISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVMEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTENANDGDKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANEIIEGVKCPECWGDIALKKSKKGSFYGCNNYPKCRFLSNHKPINKRCEKCHYLMSERIYRKKKVHECIQCKERVFLEEDDG
>NZ_CP006823.1|WP_025313568.1|120728_122273_-|flagellin-B
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVRELIINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGVEASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGLHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
>NZ_CP006823.1|WP_025366674.1|118782_120666_-|motility-associated-factor-glycosyltransferase-family-protein
MDIYQKNLQALSKKDPLLFAQLKAIKENKKYEVFLGNDSANFNLLDKETNTPLFEKGPLDSSLELYKNSEIYMLYPYLYYFGLGNGVFYRLLLGNENLKRLVVIEPEIEVIFIVLNLLDFSTEILENRLILLHAAFCHYNMIASLFDMDKKSRLYARMYDLKLFNAYYERYSHQMIEINQHFTCALEHGAISVGNDAKDALIGIKQHAANLPEVIKSPSLVDFVNALKNRDTAIIVSTGPSLNKQLPLLKEIVPYATLFCIDASFPILAKAGIKPDIVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAIKKGVKQFSFRPFGYTNLFGLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDREIKPKKDKDKIFTEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLTYPTQSEQAKNLRIAKQKCEEIIQYANEKKTQVEEVFLKVAPFLEEVEKLHEEKKLEELDFKKLENLSTEIDNIKELFDDKQFNSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAKQLEYIYAHKYWLFSLAGGIDCVIEAIKMALKEW
>NZ_CP006823.1|WP_025366673.1|118474_118771_+|hypothetical-protein
MTINTHYTPNFTQLQTINNINNDATIKDRNQVEQDLQQSNIQDGFSQDNTQNAPDFDRLQALNAINNDGEIKDKSQVAKNLVGGENIPEIYSSLDTYA
>NZ_CP006823.1|WP_038419362.1|117815_118454_+|hypothetical-protein
MPSMNTHTRGIDSNLILSLQSISLSMFRKGFFGLYQGSISARIGTNQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEIFDLIENSCKVLRLGDLMDYCYNDDPRLSV
>NZ_CP006823.1|WP_025313564.1|116764_117595_-|HrcA-family-transcriptional-regulator
MVIDEIFQIMMLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELANLKISCATIRNYFQTLSKEGMLYQAHSSGARLPTFKAFESYWKKSLRFEVLRVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDFLAFSCTLGYSVKMEKFLLELVGRSVKEVRSIAASVNALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLNKGLHFIEPDCMLVTRPIEFQNKRMQLLCVGKLECDYEGFFQTISKEE
>NZ_CP006823.1|WP_015428569.1|116189_116765_-|nucleotide-exchange-factor-GrpE
MKDGHNQEHDHLSQKEPESCKKACACNEQQGEEIQEASEKECEIKEDFELKYQEMREKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHRSAIEVDKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKND
>NZ_CP006823.1|WP_015428568.1|114296_116159_-|molecular-chaperone-DnaK
MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGLDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLALEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFINKELNKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKANLNENDANEIQNAINALKECVKNDNATKAELEDKTKLLAQAAQKLGEAMANKNNAEQPKKKDDDVIDAEVE
>NZ_CP006823.1|WP_025313563.1|113579_114158_+|hypothetical-protein
MKKIEWNEKQRKAFQDLLREFVALIDTKAQEKKQTGRAPKIPKYGSCQKGLNKFLTPWGYACKISLGSGNLSNEPSIAFCRHDILGEEFVNGEIPTPKKGFYLWFAYYWCNNVEKIDICIGCSREPNELKECQKCLAYDKIIDPNGVTYYQEIYDDLEAHLENITNDFLRFANEFNQIPTAYFELEPSSASH
>NZ_CP006823.1|WP_025366676.1|126884_129323_-|pyruvate,-water-dikinase
MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYNMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAH
>NZ_CP006823.1|WP_025222409.1|129676_131515_+|threonine--tRNA-ligase
MNAELIAVYKDEQIIDLESAKVLGLSDGIKALNGTEPIYFDDSPLALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTASKISEEDLPKIEAKMKEFAKLKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEFEDLCKGPHLPNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRDHRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNEHNHAEQPVMIHRAILGSFERFVAILSEHFGGNFPFFIAPTQIALIPINEEHHVFALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREKQAQYKMPLKEFLNMVESKMQEVSF
>NZ_CP006823.1|WP_000089209.1|131511_132123_+|translation-initiation-factor-IF-3
MSRNEVLLNGDINFKEVRCVGDNGEVYGIISSKEALNIAQNLGLDLVLISAGAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED
>NZ_CP006823.1|WP_001125542.1|132103_132298_+|50S-ribosomal-protein-L35
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSLLCRA
>NZ_CP006823.1|WP_001264172.1|132394_132745_+|50S-ribosomal-protein-L20
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHNTSYSRFMHALKVAGVELDRKVLADMAMNDMQAFESVLESVKEHL
>NZ_CP006823.1|WP_000750191.1|132944_133805_+|outer-membrane-protein
MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKSPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHFGFFVGVAIGGTSWGPTNYYFKDLADEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGVTYKFTFHRPYAFYWRYIVSF
>NZ_CP006823.1|WP_025287784.1|134159_134591_+|DUF1104-domain-containing-protein
MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLKAMKEEERKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGKKGKKPSHHQH
>NZ_CP006823.1|WP_025366677.1|134997_135867_+|hypothetical-protein
MKRILFFLVATTFLLRAETDSATINTTVDPNVMFSESSTGNVKKDRKRVLKSMVNLEKERVKNFNQYSETKMSKGDLSAFGAFFKGSLESCVDQKICYYEHKNGKVSFVVNDREKFYKHVLKDLGTELSLPLFNWLYKGSDFGALHEQFGDMYDGYIKYLISMVRISQKERARKLDAVTLKKMEDQAEKDTKAAFQKRSNGELESHTDSPEFISSSKNTQNASNPDPDSTTNANVLKETASKEPEISSKKEKKPKKKRRLSKKEKQQQALQQEFERQISDSSKSENIAK
>NZ_CP006823.1|WP_000046341.1|137849_139091_-|HAAAP-family-serine/threonine-permease
MAQEKALIRDPKKLNAFDLRWMASLFGTAVGAGILFLPIRAGGHGIWAIVVMSAIIFPLTYLGHRALAYFIGSKDKEDITMVVRSHFGAQWGFLITLLYFFAIYPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVALVSLMMLVMVFNATIVTRICNALVYPLCLILLLFSLYLIPYWQGANLFVMPSFKEFVLAIWLTLPVLVFSFNHSPIISTFTQNVEKEYGAFKEYKLNQIELGTSLMLLGFVMFFVFSCVMCLNADDFVKAREQNIPILSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKKASKTLSVSVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMIAFYSISSLKRFRNLKVDIFVFVFGSLTALSVFLGLF
>NZ_CP006823.1|WP_025366678.1|139271_140621_+|3-deoxy-7-phosphoheptulonate-synthase-class-II
MSNTTWSPASWHSFKIEQHPTYKDKQELERVKKELHSYPPLVFAGEARNLQERLAQVIDNKAFLLQGGDCAESFSQFSANRIKDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSNATEILDNEEVLSYRGDIINGISKKEREPKPERMLKAYHQSVATLNLIRAFAQGGLANLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIEKTPILREVEFYTSHEALLLHYEEPLVRKDSLTNQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASVSEVLELCDVLNPHNIKGRLNLIVRMGSKTIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTSLGVKTRAFDSVLDEVKSFFEIHRAEGSLASGVHLEMTGENVTECIGGSQAITEEGLSCHYYTQCDPRLNATQALELAFLIADMLKKQRA

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Crispr_ID: NZ_CP006823_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006823_2

377586-377660

Orphan

Consensus_repeat	Method
TACTTTTATATCACATTACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006823_2

>merge|NZ_CP006823|2|377586-377660|CRISPRCasFinder
TATCTTTATATCACACCACCTTTATTATCAATCCGCTACTTTTATATCACATTACTTTTATATCACATTACTTTT

>NZ_CP006823|2|2|377586-377660|CRISPRCasFinder
TATCTTTATATCACACCACCTTT	ATTATCAATCCGCTACTTTTATATCACAT
TACTTTTATATCACATTACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006823.1\|WP_015086992.1\|383954_384329_-\|response-regulator	unknown	unknown	gnl\|CDD\|381150
NZ_CP006823.1\|WP_025366762.1\|382964_383942_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|273061
NZ_CP006823.1\|WP_025366757.1\|367619_369059_+\|outer-membrane-beta-barrel-protein-HofB	unknown	unknown	gnl\|CDD\|334957
NZ_CP006823.1\|WP_025366759.1\|372105_373257_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224031
NZ_CP006823.1\|WP_025366758.1\|371426_371996_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|224701
NZ_CP006823.1\|WP_025222589.1\|374039_375035_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP006823.1\|WP_025366760.1\|375687_376998_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|374954
NZ_CP006823.1\|WP_025366761.1\|377880_380106_-\|copper-translocating-P-type-ATPase-CopA	unknown	unknown	gnl\|CDD\|319783
NZ_CP006823.1\|WP_025222596.1\|385352_385760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025222583.1\|366399_367323_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NZ_CP006823.1\|WP_025222595.1\|384618_385221_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP006823.1\|WP_015428763.1\|375038_375554_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374600
NZ_CP006823.1\|WP_025222586.1\|370799_371423_+\|neuraminyllactose-binding-hemagglutinin-family-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_015643034.1\|385762_386005_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_000805279.1\|381057_382956_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP006823.1\|WP_025366763.1\|385998_386535_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|367115
NZ_CP006823.1\|WP_001122213.1\|380102_380816_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP006823.1\|WP_025222585.1\|369150_370806_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP006823.1\|WP_025222592.1\|377679_377880_-\|copper-binding-metallochaperone-CopP	unknown	unknown	gnl\|CDD\|188014
NZ_CP006823.1\|WP_025222591.1\|377212_377494_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006823.1\|WP_015086992.1\|383954_384329_-\|response-regulator	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.7763e-64
NZ_CP006823.1\|WP_025366762.1\|382964_383942_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|273061	TIGR00406, Ribosomal_protein_L11_methyltransferase, ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. [Protein synthesis, Ribosomal proteins: synthesis and modification].	2.0178e-130
NZ_CP006823.1\|WP_025366757.1\|367619_369059_+\|outer-membrane-beta-barrel-protein-HofB	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	0
NZ_CP006823.1\|WP_025366759.1\|372105_373257_+\|AAA-family-ATPase	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	1.6441e-72
NZ_CP006823.1\|WP_025366758.1\|371426_371996_+\|restriction-endonuclease	gnl\|CDD\|224701	COG1787, COG1787, Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes [Defense mechanisms].	6.55566e-85
NZ_CP006823.1\|WP_025222589.1\|374039_375035_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	7.29043e-153
NZ_CP006823.1\|WP_025366760.1\|375687_376998_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|374954	pfam17033, Peptidase_M99, Carboxypeptidase controlling helical cell shape catalytic. This is the peptidase domain of a D,L-carboxypeptidase. The active site residues are Arg86, Glu222 and the metal ligands, in the peptidase domain, are Gln46, Glu49 and His128 in UniProtKB:O25708. The protein binds many zinc ions and a calcium ion and there are other metal binding sites. The catalytic activity is the release of m-Dpm from the peptide muramyl-Ala-gamma-D-Glu-m-Dpm; this is probably the precursor of the cell wall cross-linking peptide.	9.65193e-157
NZ_CP006823.1\|WP_025366761.1\|377880_380106_-\|copper-translocating-P-type-ATPase-CopA	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP006823.1\|WP_025366763.1\|385998_386535_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|367115	pfam02527, GidB, rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.	1.65652e-66
NZ_CP006823.1\|WP_025222583.1\|366399_367323_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	2.37928e-145
NZ_CP006823.1\|WP_025222595.1\|384618_385221_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.28123e-36
NZ_CP006823.1\|WP_015428763.1\|375038_375554_-\|hypothetical-protein	gnl\|CDD\|374600	pfam16522, FliS_cochap, Flagellar FLiS export co-chaperone, HP1076. FliS_cochap is a family of largely Campylobacterales proteins that are co-chaperones for FliS, one of the type III secretion system flagellar chaperones. The HP1076 (Flis_cochap) and FliS complex together prevents premature polymerization of flagellins and is critical for flagellar assembly and bacterial colonisation. The HP1076 shows co-chaperone activity that promotes protein folding of FliS with mutations in the flagellin binding pocket and enhances the chaperone activity of FliS.	2.46564e-55
NZ_CP006823.1\|WP_000805279.1\|381057_382956_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP006823.1\|WP_001122213.1\|380102_380816_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	9.7235e-58
NZ_CP006823.1\|WP_025222585.1\|369150_370806_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.0061e-150
NZ_CP006823.1\|WP_025222592.1\|377679_377880_-\|copper-binding-metallochaperone-CopP	gnl\|CDD\|188014	TIGR00003, COP-associated_protein, copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds].	1.87007e-25

>NZ_CP006823.1|WP_025222591.1|377212_377494_+|hypothetical-protein
MHEIIQKGMDGLTQRLDNDLKDEHSRILVPIGYIKGLCCVGGMKPDDLCVLFVKIFELIRSRFKSNLSRNSLSFMGGVISGLNKQICMDKKLK
>NZ_CP006823.1|WP_025366760.1|375687_376998_+|purine-nucleoside-phosphorylase
MKKIWLLVWGLYSFLHAIETIEKVPTNVEDKDKAPHLLLLAGIQGDEPGGFNAANLFLMHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPTIDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINAHLLRPIEEYHLKNTRTVQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDFELNPSSVHALINNKSLWAKISSLPKMPLFNLRPKLNHFPLPHNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNRLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHVMDNIRANVIGFSVSNESKPNEAGYTIKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV
>NZ_CP006823.1|WP_015428763.1|375038_375554_-|hypothetical-protein
MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVDNPLDLLENAGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNKSLKDLSSDNLRA
>NZ_CP006823.1|WP_025222589.1|374039_375035_+|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MKLWFPYFLAIVFLHVLGLALLFMANNASFYAAASMAYMLGAKHAFDADHIACIDNTIRKLTQQGKNAYGVGFYFSMGHSSVVILMTIISAFAIAWAKEHTPMLEEIGGVVGTLVSGLFLLIIGLLNAIILLDLLKIFKKSHSNESLSQQQNEEIERLLTSRGLLNRFFKPLFNFISKSWHIYPIGFLFGLGFDTASEIALLALSSSAIKVSVVGMLSLPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALSVFIALFIGLIELFQVVSEKLHLKFENRLLNALQSLEFTDLGYYLVGLFVIAFLGSFFLWKIKFSKLES
>NZ_CP006823.1|WP_025366759.1|372105_373257_+|AAA-family-ATPase
MIQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCLVGKSMHPCTNILEIYDNIRKEPLTTESKNLMFYNLNTRKPIRITTTSDNNQTLDLQIEFIANENQKVIESQIIPTVEQAQAFSQLKFIFKKGEEEIYNDYLNIARIPNFPPIPNQSSYNRQFNNFRPDLSRKLLPFESAVIITPSDVARKRNVINPNAIHIMDLNIIQAVGKICSNSQLEGELNKHLNQFDNNIESISFNVNNQLKLKVKNIEEKFPLSMFGDGLMKYLYIVSTFIANNATTIYIDEVENGLHFSRMRLLLKNIIDFINNNKNRNLQVFMTTHSQEFVEILDQVIKEKNFANQTKLFCLKRDGENIIPRTYYGESLEYYFENEENLFG
>NZ_CP006823.1|WP_025366758.1|371426_371996_+|restriction-endonuclease
MKKIVFFILVILFSVGIYLAWHVLLEKALELKLATSANDLLLKLLAILGVFSMLALFQGVISSYQKRQLKRALQKIDAMNGFEFEEYAKIFFTSKGFEVSITQKSGDYGADLIIEKDGIKWAVQAKRYSHKVSPKAIQEVVSSKAYYACKKACVITNSYFTQAAQKLAQANGVLLIDRDEWVRFLNKKR
>NZ_CP006823.1|WP_025222586.1|370799_371423_+|neuraminyllactose-binding-hemagglutinin-family-protein
MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLTPPKIFFNAYFVPPFYQKEFKKAITQQIAYFLKDKSAFILNVSGNVFFSFEENPKDLKAIKERLKKTIEPNADPKNVMRFLNLQASLILECAPQTTCPFDTLLIPTAFSVPVYYANRLGDNPSLFSQEDKTYHNALIKALNKAYYSLMEGLEKRLNAIENAKWL
>NZ_CP006823.1|WP_025222585.1|369150_370806_+|ABC-transporter-ATP-binding-protein
MKLFFRRYSKYLKEHYKSFIVVLFSSLVVALSTAWGTYLVKPTLDEIFINKDTQMLKILPFLVILAYLGKSGGMYLGTYFTNFIGLDIVKKIRNTMLESLLKMEMDFFNRTKKGELIAKITNDIGLIRASLSNYLSESIREGLTIVGLVGVVVYQSPKLALVGLVIMPLAAIPIGKIIRKVKKLAKSHQESNAKITARLSEVFNNVEAIKISNGEKLEHKAFVKENEAFFKIGIKNIAVAEISSPLMEFLGSIAIALVIYLGGNEVIRGHISVGAFFSFITALFMLYTPIKRLTRIVSNFQEALVASDRIHEILEREPAIVDGGLTLNNAIHTIEFKKVWLAYTLDNQERYVLSDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINNQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYGLEIDEVKIKECLKKAQALDFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDAQVLIFDEATSALDNNTEESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLIEC
>NZ_CP006823.1|WP_025366757.1|367619_369059_+|outer-membrane-beta-barrel-protein-HofB
MKNSTLLKNKVFCGLYVLSLGAPLQAFDYKIEVLAESFSKVGFNKKKIDISRGIYPTETFVTAVGQGNIYADFLSKGLKDQGHVLEGKVGGTLGGVAYDDTKFNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSSAPYMSGYTQGFEISAKVKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRALNYGIHLVDYTYERKGVSISPFFQFSPGTYYSPGVVVGYDSNPNFDGVGFRSETKAYILLPVHDPLKRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFWTNSVYDIGQAISHVVTADAISGWVFGGGVHKKWLWGTLWRWTSGALANEASTAVNVGYKISKSLTASVKLEYFGVMTHSGFTVGSYKPTPGSKALYSDRSHLMTTLSAKF
>NZ_CP006823.1|WP_025222583.1|366399_367323_+|aspartate-carbamoyltransferase
MPKKCRHLLQTSDLSLDEIKLLLKKASVYANDFNAASLETKEKMQNKIIVALFFENSTRTVSSFEIASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNIEEAIEFADILMSLRTQTERHNAPIFASLKDYGNAYCITQKRLEAHAKNKEVIILHPGPVHRDIDIESAVLEDKRSKVLEQVKNGVAMRMAVLEFLLLD
>NZ_CP006823.1|WP_025222592.1|377679_377880_-|copper-binding-metallochaperone-CopP
MKATFQVPSITCNHCVDKIEKFVGEIEGVNFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEVM
>NZ_CP006823.1|WP_025366761.1|377880_380106_-|copper-translocating-P-type-ATPase-CopA
MKESFYIEGMTCTACSSGIERSLGRKSFVKKIEVSLLNKSANIEFDENQTNLDEIFKLIEKLGYSPKKTLAKEKKGFFSPNVKLALAVIFTLFVVYLSMGAMLSPSLLPKSLLTIDNHSNFLNACLQLIGALIVMHLGRDFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWPLYLVYTNQWSYGHYYFESVCVILMFVMVGKRIENVSKDKALDAMQALMKNAPKTALKMQNNQQIEVLVDSIVVGDILKVLPGSAIAVDGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTFNSHTSFLMKATQNNKNSTLSQIIEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAILAFVVWLIIAPKPDFWWNFKIALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVDTIVFDKTGTLTNGKPVVKSVHSKIELLELLSLAGSIEKSSEHVIAKGIVEYAKENNAPLKEMSDVKVKTGFGISAKTDYQGAKEIIKVGNSEFFNPINTLEIKENGILVFVGRAISEKEDELLGVFVLEDLPKEGVKEHIAQIKNLGINTLLLSGDNRENVKKCVLELGIDGYISNAKPQDKLNKIKELKEKGQIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIQLSQAAIKNIKENLFWAFCYNSVFIPLACGVLYKANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFKIKDH
>NZ_CP006823.1|WP_001122213.1|380102_380816_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MPINPLYLFPNLFTASSIFLGMMSIFYASSYQFVMACWLVVASLILDGLDGRVARLTNTTSKFGIEFDSLADVVAFGVAPSLITYFYVGYNFGRIGMAVSALFVIFGAIRLARFNISTNTSDPYSFIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKLFLGFIVLLGVLMVSNIRYPNFKKVKWNLKLFILVLIFLSLVFVRPLEALSVFMGLYLIYGIIRWLFLMVKIIFNKNKSA
>NZ_CP006823.1|WP_000805279.1|381057_382956_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MKPTNEPKKPFFQSPIILAVLGGILLIFFLRSFNSDGSFSDNFLASSTKNVSYHEIKQLISNNEVENVSIGQTLIKASHKEGNNRVIYIAKRVPDLTLVPLLDEKKINYSGFSESNFFTDMLGWLMPILVILGLWMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLEEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEAANNLESRLIPLEEQAS
>NZ_CP006823.1|WP_025366762.1|382964_383942_-|50S-ribosomal-protein-L11-methyltransferase
MYYEFFFIFPKERELFESFLLDTTHLALEESSLENLKAFDDKETIEFISQSSWHYFATHNPLKENLKEKPPHLKNFVILRSQKDLNDSLIPALEAFCLSLQQNLQSGFDFFYLSRNLASKDWLEAYKQAILPVQCAKFYIHPSWHQKPSHVATDDSIMIDPALAFGSGHHESTSMCLELLSNLDLKRKNALDVGCGSGILSIALKKQGVSALSACDTDSLAVEETLKNFSLNQIPLLAQDKIIHGSTQKIKGRFDIIVANIVADVIKSLYSEFVRLCNHTLILSGILETHLNSVLQIYYNGFEVLEQRQRNEWVALKLLKKQSIN
>NZ_CP006823.1|WP_015086992.1|383954_384329_-|response-regulator
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
>NZ_CP006823.1|WP_025222595.1|384618_385221_+|outer-membrane-protein
MYYLRILILSIGFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKNDWAYSRYYFFIDYGNVLFNNNSTLQANMFTYGVGGDFIVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERRSLFERSFLFFVSHSWHF
>NZ_CP006823.1|WP_025222596.1|385352_385760_-|hypothetical-protein
MLILGHPLIPTTRFIFIKNTDGIHSSTNNDIVCFEAHPKNLELAKYCCENSVNFSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFSMDLNDTELWEICAKSQIDGVISKDSLLLK
>NZ_CP006823.1|WP_015643034.1|385762_386005_-|hypothetical-protein
MLRILIPLLIIVWVLWRLFLKQKPLKDNHKDSHSYTQQTPKELEDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLNDKG
>NZ_CP006823.1|WP_025366763.1|385998_386535_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNPLLQDYARILLEWNQTHNLSGTKHLSELEPQITDALKPLEFIKDFKSCLDIGSGAGLPAIPLALEKPETHFILLEPRIKRAAFLSYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKDTECFTHQKRIYFYKSKESLC

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Crispr_ID: NZ_CP006823_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006823_3

500134-500231

Orphan

Consensus_repeat	Method
TGCCACTTGTTCCACTCGCACTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006823_3

>merge|NZ_CP006823|3|500134-500231|CRISPRCasFinder
TGCCACTTGTTCCACTCGCACTAGAGCCATTAGAGCTAGTATTTCCTGTGCCTCCATAACCACTTGCATATCCCATGCCACTTGTTCCACTCCCACTA

>NZ_CP006823|3|3|500134-500231|CRISPRCasFinder
TGCCACTTGTTCCACTCGCACTA	GAGCCATTAGAGCTAGTATTTCCTGTGCCTCCATAACCACTTGCATATCCCA
TGCCACTTGTTCCACTCCCACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006823.1\|WP_025366791.1\|501823_503491_-\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	unknown	unknown	gnl\|CDD\|132874
NZ_CP006823.1\|WP_025222672.1\|496221_497166_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|274301
NZ_CP006823.1\|WP_001177715.1\|507556_507820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025222668.1\|480159_480732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025366789.1\|484821_493428_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226993
NZ_CP006823.1\|WP_025222676.1\|504727_507310_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP006823.1\|WP_025222669.1\|480853_481654_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP006823.1\|WP_025222677.1\|508111_508591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_000736106.1\|507830_508115_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP006823.1\|WP_038419111.1\|508694_509519_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_001183709.1\|507309_507546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_000365713.1\|479804_480182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_000738749.1\|504596_504731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_001043180.1\|484214_484439_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025222671.1\|495706_496225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_033586499.1\|497170_497467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_000732628.1\|484431_484686_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025222679.1\|510300_510597_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006823.1\|WP_025366790.1\|500624_501827_-\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|225499
NZ_CP006823.1\|WP_025222670.1\|481623_482091_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006823.1\|WP_025366791.1\|501823_503491_-\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	gnl\|CDD\|132874	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells.	6.50529e-20
NZ_CP006823.1\|WP_025222672.1\|496221_497166_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	4.72055e-55
NZ_CP006823.1\|WP_025222676.1\|504727_507310_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP006823.1\|WP_025222669.1\|480853_481654_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.7657e-20
NZ_CP006823.1\|WP_025366789.1\|484821_493428_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	0
NZ_CP006823.1\|WP_025366790.1\|500624_501827_-\|TrbI/VirB10-family-protein	gnl\|CDD\|225499	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion].	3.93768e-56
NZ_CP006823.1\|WP_000736106.1\|507830_508115_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	3.09374e-05

>NZ_CP006823.1|WP_033586499.1|497170_497467_-|hypothetical-protein
MLIFKEPIMLDEITQENGLEPISNNENQKLKEAEMPLSNIQKAKELKNNANLIVRRTDELDKAINKRESLQREFDRRIKHLDNKIETLSKKIEELKRK
>NZ_CP006823.1|WP_025222672.1|496221_497166_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MDLDKLKDYRALRNAILRLLPYLDSGITELIMNKEKEIWLYKLDGVREKVFDENLDKSFLLSFGEQLASFRDLFFNANYPTLNTSIPTSRYRVSMNHFAISTDNELSLNIRVPSEKKFDLKAFKLSSVCQYDYEYLQKLMIEGKNLLISGGTGSGKTSFLNALIEFIPKHTRIVSVEDSEELDLRAFENHKSLLVDKTESSKFTYENALNMAMRMSPDRLMVGEIDTRNAMLFLRFGNTGHKGMVSTLHADSVHGVIEAIALNLQMNKSGLDVKVARKFFESSVDIVVQIVLDKATNTRYIQEILPTKELRSSL
>NZ_CP006823.1|WP_025222671.1|495706_496225_-|hypothetical-protein
MKKYQNKRKLGKHINCFISQNAKEVLERYLKSKKLNITECIENLILELDPNKENLKARDFYESLFKVISINQHVYRELMANSNNLNQLTKNTNIAIKYNKPFYLQNLIFLEQLFKVMDTLNKNVEDCKKVSLELLLQIYKEQKSQTEFNAISKVLNALNEKQSITESKKDNA
>NZ_CP006823.1|WP_025366789.1|484821_493428_-|DEAD/DEAH-box-helicase-family-protein
MAYKPSKKKLQTLREEPNLFSILDDGDVINTSSYKQEPEPQVKEPQSSATQNPNKEQETPNYAVKTQINTARMVSRNPIEWARYLSFERRVHKDNSKEEVNFFANGEIKESSRVYEANEKGFERRITKRYDLIDTIRNKEFFSKEIDTLTYTNSLEELKEQGLEIQLTHHHETHKKTLENGNEIAKEYDYLKDIYQEAERTRDAELVREIIPSISSAEYFKLYNKPPFESTNNENTKLNTNDNEEVKKLEFELAKEVHILILEQQLLSATDYYSWIDKDDYASFAWKMHRLINEDRLKENHLSTDNANKIKQFFFNNGFILGWTKEEQSAMQENRDYSLKSALLSLEEIAQAKIELQKYYESVYVNGDGSKREIKPFKEILRNINNFEKAYKERYNELVSLNEAIIQAKERSNEQQKFNANNNNTIKNTIETNTSIGNNIIQNNDNNNPNLSIADLELEQQNLGGLHDQERTNRADEPNRTRAGIPQEIHRRSEHKGLQEGVERSSDEELSHQDSSLFIEPREQGGTRGVYRSSDQQAVSEKSHREGDRLHEHVSRGDGVSARAEARADSNGASSQASRMENGARSEEKGDNPSDERGVSQTPQSPSHQQNSSRDLGLSLSREQPGQTGRLRLFDHGQMGSLFPTDHENQRERNNNELDKSSDRANENGDKSPRQNGSANQESARSERYGIAQGSSNQSVLPLAQSRLHHAGLSAPNGLGNLEENRDQKRGLLSNLDHLESLLNAIRNNTIASEPDFRSRLLEAIQNNEPLKDSLVGTQLLKDPTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFNALDSQAIDGNAISNSVGLNPIQENEIADNSVELNSIQEQTTQEQNTQENAQTTIKQETPTAPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQEILKGDYYATQEEQEILAQFSGWGGLESCFKKDQRPEEFKELNALLTKDEFRRAYSSTRDAYYTPKLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFIAHAPSDKNYRFMGTELDPISANISKFLYPNQVIQNTALENHQFYQEYDAFVGNPPYGNHKIYSSNDKELNNESVHNYFLGKAIKELKDDGIGAFVVSSWFMDGKNSKMREHIAQNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVDEATNQSFTKAMPYYDKIIDSLDDNTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQEKLQRWYEKIDTANFGYKEQDYKIIKDFIDKVGENNINLNEQTLNEYFIHHPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLNLSQALNQAIEKLPKDVYQYHKTTLKTDALIIGANNERYEEVQKLIKNLERGELVKWDNLYFQLEQNNEMGVFLKPTKINSKVQDSRLKAYFKIKDALNDLTSAELSPLSSDLELESKRARLNLVYDEFVKKFGYLNENKNRKDIKQDLYGAKVLGLEKDFEKEITPRSAKMQNIEPRQAQAKKAQIFFERTLNPKKELVITNAKEALIASINQKGCLDLHFIRDHFTTQSLETTIKELLEQKLIYKDHKDNGDYVLANDYLSGNVKRKLKEVKEAINQGVEGLEANVKDLELIIPKDLKATEIMANINSPWIPTQYLEEFLIELAANHYEKQYGIKMTDYQLGNLKEDIKVEHLNGAYEVFSRNNELNELYGIRHKDKPHSYKVPFESLLNKVLNNRDLSVKYAQVDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDYARRTHLEQIYNDTFNNSVLKTYDGSQLELEGFNHHISLRPHQKNAIFRTIQDRAVCLDHQVGAGKTLCAIASCMEQKRMGLVNKTLIAVPNHLTKQWGDEFYKAYPNANVLVVDSKDITEKERELLFNQIANNNYDAVIIAHTHLELLSNPRGIIEELKEEELVNAEKNFERQELAYKNNPRETKKPNERVFKNKLDKIRAKYDAILEKQGSHIDISQMGIDNLIVDEAHLFKNLAFETSMEKIAGLGNQQGSNRARDLFIKTRYLHQNNKKIMFLTGTPIANSLSEMYHLQRYLTPDVLKERGLEFFDDWAKTYGEVVNDFELDTSAQSYKMVNRFSKFSDVQGLSTMYRAFADIVSNDDILKHNPHFVPKVYGDKPINVVVKRSEEVAQFIGVADENGKYNEGSIIDRMQKCEGKKSKKGQDNILSCTTDARKVALDYRLIDPNAKVEKEFSKSYAMAENIYENYLETNAVKGTQLGFIGLSTPKTHSQKVSLEAPDNAHEIENRNPLDKAQELLESLSSYDENSNLIAPSKKELENELKEKEAKSVNLDEELAKSCKFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDLFKKINRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEEVKLRAEIKNEEAKYKAFNKENYFNEENLKNNSSKLDYLKQELKDLETLQSSVMIPIHTEIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNDLFFNEERDCKLLEYKGFVVNAYKTKYQVEFSLSPKDNPNIAYSPSNMVYKNDTANMFSSYNFCGEIKFDGFLKRLDNAITKLPEKIKECENSITNTKDNITKFTRLVEQKPPYPRLEYLQALKWDHKTLIDDLAKMSKDRDYKPVFNPKSQEVLEKMNAEKRASLENESLTITEIENSNKEQEIKGNTKSDDEVKQHIEQVIEKEIEKGAEIISYKEVAITNNVDYYENEEELETTQSRSRR
>NZ_CP006823.1|WP_000732628.1|484431_484686_-|hypothetical-protein
MKKLFLGFLVLPYLLGAECVNKIEKIFYNSKAKKEGVEVLMDTTSSLNKQGYKIVSMVESPFDKGVLIVAYEKCLEFKKELNHE
>NZ_CP006823.1|WP_001043180.1|484214_484439_-|hypothetical-protein
MNKSIKEVLFADNGKWAREWWADETYYWTKYIVYDGFVRDNDCILLTPKPIIMDIKGELPSHLTKSYRNNQIKE
>NZ_CP006823.1|WP_025222670.1|481623_482091_-|hypothetical-protein
MLYIPPTSKEVYVSSIVALNIHSPQGTGDWHSSRALMPNAIDLCYYIYGKDQERNTNHLLGDLGIIDGTARLNKMGYYPKNTPTYIADHPRACVDYLYMAVLKTGSLGRVMLDEWFPSIEDKESVYALIEVMKPKLNKQERENLDKWITRNPITE
>NZ_CP006823.1|WP_025222669.1|480853_481654_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MDNKKPHYRVILSEQEIYHEKLMRAIVKNLVDTPMVLKGGTALYLGYGLNRFSEDLDFDCHKKINLLSKVKSAIPNGIILNDIHIKKDTDSVGRYMVRYATKDNKEEQTLKLEVSYRDAPKESEVNVIDGMRIAKMKRIIDNKLCACFDGEHTRTKARDLFDLHFLAKHYEEHFNLDLANRLKEFSKDPDKLVSDYLEDKNDDILVNKIMDLEKTALELSIMAHLIHKKLEKQSHSLNALQEQQNHNNNDLLDDANENTPTPKRRR
>NZ_CP006823.1|WP_025222668.1|480159_480732_+|hypothetical-protein
MKTMNLNEFFTSKVIYKDTPLKLKNKLEQDISQASLEKKLILANELAHMVFAKIDNENAPKILISRFMCKFNLIDYEGTIPSDFRPIDEEEYEDDLEWLNEEKEDRLFDYYLFLNGVKESDLIEVVSESIETYDECMIEIAQNILKNKFSYDIDLLQVLIEGYAKEIREFLSNGLTKESFKELLASKRIN
>NZ_CP006823.1|WP_000365713.1|479804_480182_+|hypothetical-protein
MDLQQIDELEKKFEQQEEQTNEQESHLKQEISIKEIKTPKKRGRKKSVLDEDKKKSFNIAFSPSVIKELDEFLLEFGSFKETRSTFIEEALIRHLKYRKNTQEQKLLKQLEKLQKKDTNENNELE
>NZ_CP006823.1|WP_025366790.1|500624_501827_-|TrbI/VirB10-family-protein
MNKSLLKKIGLVIGGFGALMALGLLANKGSDNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTTNVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNIRLKPLEPTKPATKPETEYGADSFSNLRYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLLMQLTRNTGMGINQVINQMPRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI
>NZ_CP006823.1|WP_025366791.1|501823_503491_-|TrbG/VirB9-family-P-type-conjugative-transfer-protein
MIRVFKSINLTLCFLTSLLAENSIQNYNEPMDYSQNPTIQPFNNAPTNNYNQPQETQPSTNYNTQPNYPQTPIQNQNTYSQPTTPIQNSQPNNTQTQTMLNNAKQFTNNALNSTKQTINNATNYVNNKLTPKPNDVPISAFSANSPYANKEVSKQTQKSDDTYPQNDDNNNDDNSLKPMTNFNAIQSNFFAKNRSIKDNAHFIHYTIGDTFNIRLRYAMTTTFIFDEPIAQVVLGDDIGFSTKMLGEDKEHLISNILLIKPLQIGVDSNLTIIGKSGKVYSFYVFSTTYTSSKNPALMVYVSSKEYFKHFTSSKKETNKEIKTTHSTPNKDIKVSHNAPKKITKKSHSIKEQNPKSKNPTTKTAIANAPLSLNRFKSPSYPPSNALANSRKASENFKVISNKTKTLKEHRPSQDEMKYVDYSAKIKDDGKFIRIGDNVNHIYINKKKMEYGYVIIDKKKRKWYCLWMCKKIVKSKYKDDLPTQIFNDEQFTYFKFNRSNARSKFPVVYKVVDGYDNPVNSRVVGDYLIAEDVSNQWNLKLGKAYLCIEKIAKKVR
>NZ_CP006823.1|WP_000738749.1|504596_504731_-|hypothetical-protein
MKKMQYLAFILVAVLLNACSDKFIEMKKSPCALNAPMMQGGLYV
>NZ_CP006823.1|WP_025222676.1|504727_507310_-|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MFENALKYCKEKAIDLLTGFVPKTYSMTEECNILGLYDDTFIITKQENLVAIMSLQGLSYSSLMQKDLEGYFDTRQNVLNTISKDIQLRIVAKRRKEFINQSPNIDNPYAKAIITQFESKEIYKTEYFLVFESITSNVKSFFEKKKLEMTTSINEELEESSKENKQENENSSNETYSNTSSKKDKKNKFKKKTTFSATSKRALLIQTIERVKNALREFKPTLLNSKEVLNFYAEYINGKYIAFNPKLKRLSDSYITSNIHFKKDYFIIEFQNQSTFCACVGIKNYESEEISSLPISTLLHTQIELDLIFHIRSLGQFESLNFLKTKKKLTLSKIVKNDIDDYIELVQANRLSLQECALNLVLRAKSKAKLDKSLKEILSLLNNAGLGSVTETIGLKPSYFSFFPNNANINPRMRNQTSQVIASLILFEKNNTGFRANSWGDMPLSVFKNLDHSPYLFNFHNQEVKHKGVLAHNVARVVGHTMIIGATGAGKTTLISYLMMSALKYPNIDILALDRLNGLYSFTKYFDGIYNEGESFHINPFSLEDSASNRAFLLHFYAQMAKVDSYDKHNDKIEDRTALLNAIDTMYRNYNDEVKQAKFSNQELPLPFDLKEFVNSIVKTNTNILDSSFEDYLKSSLFSSRMDSLDFKTRISTINTDSILHNDDDAGLLAYYVFHKIIDRALRINRGFLCFIDEFKSYAQNEMMNKKINEIITQARKANGVIVLALQDINQLSEVRNAQSFIKNMGQLILYPQRNIDTKDLNDKFGIRLSDTEKHFLENTAVNEYKVLLKNMNDGSSNIIDVSLSSLGNYLQIFSSNSSMVEHIENLIKHYPTTWKEVFVNNTYQKFDDKKHLEKVLCPT
>NZ_CP006823.1|WP_001183709.1|507309_507546_-|hypothetical-protein
MQQEIVVEEPNKITIAYNLEQTISKLKESVDLLEKNEQYNDAYALVCGIKSIVDEFHKDVTLHVSNNSKPPKRKRKSS
>NZ_CP006823.1|WP_001177715.1|507556_507820_-|hypothetical-protein
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKTKTNSFYA
>NZ_CP006823.1|WP_000736106.1|507830_508115_-|TrbC/VirB2-family-protein
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIFFKAPALANWFMSIF
>NZ_CP006823.1|WP_025222677.1|508111_508591_-|hypothetical-protein
MIELILDKKSIQIDEEFLDIKKHLEKFDSNKEQEPIAQTLENETEISCSYLWDKDFSLLEKHLENSLGHFTFESEFALLKDKEPLNLAQIKQIGVLKVLTYEMIQTLKNQIIHLAQVVNEENLEKDEELVVYHLDFTLTQQSYKVLAKFCVIKKERNIA
>NZ_CP006823.1|WP_038419111.1|508694_509519_-|hypothetical-protein
MSLSLIERDLENMEKTLKPNLDKDELNTLYRANLAYAKNTHEHFFKTKKDLDYKIFNPSIMHEQSFISFVGGQGAKRLLDMLYKLAFNAKSNKIALDRHYAKTFLQIVARTLRKNVNILEEQGFIEVIKNKQRYLYVYLKDYRELEGYNSVGANKKNNIPSPFFLQIMRFLEKFAKEIKRVTINKKECVMHIPSQELMQKTNNVVLKFTPISNPNTTYTLTYKDLTNKDIPSNLCFYQTAIVKKNLLKALKDIECVGEPINSSPKVSKYFQESA
>NZ_CP006823.1|WP_025222679.1|510300_510597_+|hypothetical-protein
MFDNNDFKGYRNLLGFNSQNAFKEFLGAKDIQPCVDFNYLNALNKRLIEIFSAINSIYCFKYNEYELECFFKNSIERVFSKIVDTHIIYPTSAKNSVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006823_2	2.1\|377609\|29\|NZ_CP006823\|CRISPRCasFinder	377609-377637	29	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	336463-336491	6	0.793

1. spacer 2.1|377609|29|NZ_CP006823|CRISPRCasFinder matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 6, identity: 0.793

attatcaatccgctacttttatatcacat	CRISPR spacer
cttatcaatccgcttcttctatatagaat	Protospacer
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Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage