Overview of predicted results
Overview of the results
| Contig_ID | Contig_def | CRISPR array number | Contig Signature genes | Self targeting spacer number | Target MGE spacer number | Prophage number | Anti-CRISPR protein number |
|---|---|---|---|---|---|---|---|
| NZ_CP003679 | Treponema pallidum subsp. pallidum str. Sea 81-4 chromosome, complete genome | 1 crisprs | DEDDh | 0 | 0 | 0 | 0 |
1. NZ_CP003679
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0
| CRISPR_ID | CRISPR_location | CRISPR_type | Repeat_type | Spacer_info | Cas_protein_info | CRISPR-Cas_info | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NZ_CP003679_1 | 936648-936750 | Orphan |
NA
Consensus repeat of NZ_CP003679_1
|
1 spacers
spacers of NZ_CP003679_1
>1.1|936672|55|NZ_CP003679|CRISPRCasFinder CATTGCCCGCATTAAGCTGAACGCGGGATACCGCTGTGACGTCAGCGACATCAGC |
CRISPR arrays and Neighbor proteins around NZ_CP003679_1
The CRISPR arrays of NZ_CP003679_1 >merge|NZ_CP003679|1|936648-936750|CRISPRCasFinder AGTGGGAGTGGGTGCAGAGGCGCGCATTGCCCGCATTAAGCTGAACGCGGGATACCGCTGTGACGTCAGCGACATCAGCAGTGGGAGTGGGTGCACAGGCGCG >NZ_CP003679|1|1|936648-936750|CRISPRCasFinder AGTGGGAGTGGGTGCAGAGGCGCG CATTGCCCGCATTAAGCTGAACGCGGGATACCGCTGTGACGTCAGCGACATCAGC AGTGGGAGTGGGTGCACAGGCGCG
>NZ_CP003679.1|WP_014342833.1|934291_935476_+|UPF0164-family-protein MVHYKSVFYKSAALVCGFVLAGASVAIASSEAAAKTRSKMSEFKRRAVSSPSGGRLSVLDGSFTALANDASFFEANPAGSANMTHSELTFAHTVGFNNSHAETLSYVGQSGNWGYGASMRMFFPESGFNFSPSTGPVCTPASNPIKKLGGLGIVNFSRRFGGLSIGANLKAGFRDAQGLTHLSLGTDVGLQWVGNVAKFFSSAEPNMYVGLSATNLGFTVKLPGSPFVLCRATGEQCCKTCSGRCTGVGTCCNGEKPCCKDCDCNCPCQDEATPGSPHATDTMLRAGFAYRPLSWFLFSVGVATRVNVSNLQVDHLWKRSSYALGMILDPVRFLTLLSGVAVNANGKVRAGVGAEIRVACFQVSASYRYDSTGDEQQGTPHNMSLGASILLGRK >NZ_CP003679.1|WP_012460596.1|926153_930755_-|SpoIIE-family-protein-phosphatase MNARLCFFSRLIFCVLSICALPLVAQEDKLYWEDPWALSTERAAFVKVAYSHDVVAVVWQEVTPKNATSGEIRLSASFYDGSTWHTVRTFSPPLLYNHRSPSLASVAVNRKNEIFVAAAFDAHTITVFKTTDFGKSFTHTVLRSQGSDIVAPYVSVASDDSLLLFASHGSEDHFSILLCRSEDGERWTPFQEFLSTEFSRRLFLPSHVSTQAQEIVVFQAHHQEGERASYQLYSTVSFDQGNTWSAPVPVTQPDEYHNQRPFLDRLSDDRFAVTWERSERTSTRYEMCYAELDRYGRKIGTTLRLAEPSDRLITPNFVHIDGTTFCVWAGESAGLNTIFLAQKKEGAWSTTAVRSSEDALLFPHAVRVDNHLEVFWQEGEGARARVMRLRPDQSVQPPTLIAENFSPNAVRKGTRARVRIVFPRDSSGIAGYNYAWQCGVQPAAPPDYVAHFPDKPQIELEATQDGTWFLAVTVWDFAGNKSAPAYLSYTRDTTPAARPQLQTPLLENTHALKSNTFTLSWNQPSTDAQGNEERDHTSFLWSLQQVAPLSALTSLRVDTDVRTFEEFQQRCVRAFPIPVDVHGTRSRQSSVSFTNKENGIYRFSVYALDRSGNVSEPAVVFFALRHFVPYTAIRYVDVKKDPAGSLQMSIVGNGFRAQGTVSQVYIDRDRKAPYDLVLHAQEFAVGSDNLISDIHIDNLKKGSYHVGVWHPARGVHFAESRVTVSEMGTVKFGAYDYEHQVRWSIPHTGGLRVNFVSLFMLIALFLAGVVFAASLTRIGDIVGEAFVLKKQVEALMIGELMPSEKRRKAMALKTHGAGLRVKFILFALTLVISVIFIVSVPLGVRFSKTQKDLLAKNLFSRVQVLLESLVAAGKVYLPAKNKLELGFLPNQTTALHEARYAVITGESEEPHEEGIDFVWATNFSDIETVLNEPEYRQGNSRFVDKRIAQILPAMEDLNRQVKKDAEKIAKGIADLTQEAVALALRTDQGSVRRRDDIQSITRQMDQRLLEIFSTFSNNAVGSYPEYRVDNLSKRHSSYLFYKPILYRQRGHADSFVHGVVFVEVSTQELLEHIEGLQRDLIKMVFYVSLIALACGVFGAWILASIIIKPIRRLASHVAMIRDTEKKEELEGKLIAIKGQDEIALLGRTINDMTEGLIKAALASKDLTVGKEIQKMFIPLDTNTEGRKLTSGYTCDDHVEFFGYYEGALGVSGDYFDYIKLDDQHYAIIKCDVAGKGVPAALIMVEVATLFQNFFKDWNIQSHGINLSDIVSRINDLIEARGFKGRFAAFTLCIFNTVSGTVHFCNAGDNIIHIYDAQQRKMKRITLAQTSAAGVFPSFMIDMKGGFGVETLTLRTGDVLFLYTDGIEEAKRLFRNKRFELVLCQEQGLAHDAPHETHTVGQAGEELGAERVSSIIESVFLRKGFSLQKWHNPVEGEKFEFDFSSCEGNLDEAVLALVAVEQVFRMYKHPRATNLDKIRVDKKVDMFLARYFVQYPEYCARKEVNSEYEEYLYYTFIKEDDQYDDLTILGIRKR >NZ_CP003679.1|WP_010882297.1|924962_926099_-|MinD/ParA-family-protein MQIIPIASGKGGVGKSLLAANLSIALGQAGKKVVVADLDLGASNLHLALGQKGNKHGVGTFLMGASSFEEIMVPTGYPNVYLVPGDSEIPGFAALKVSQRRALTVGLLKTHADYVVLDLGAGTHLGVLEFFLLSSRGIIVTEPAVSAVLNAYLFLKNVVFKMLCAAFKKGTGGSIFLENLKSDAAAVQRMYVPKILAELERVDQRGVAVLLDRMRSFRPRLVMNMIADPKDVDKALKIRRSCEQYLNITLEYLGVIYQDTQQNVALSSGLPIVVYKPQSLIAQAVYRIADKILQSEGEEASSIEDYEGLVERSFASAEAEAEVDFQFRMDYLEDLIKSKTVCVGDLAEIIKAQQYEIATLRKQNLLLQRKINKTLRNA >NZ_CP003679.1|WP_010882296.1|923813_924812_-|prolipoprotein-diacylglyceryl-transferase MLSIVYPSWIRPEIIPSFPYFRWYGFMYVVAFSIAYILFRYQVRRGELDKWSRVSEPVTQDDIMSFFTWTILGILIGARVFSTMVYEVDLLYMRKPWLIFWPFSLQTGEWVGLRGMSYHGGLIGALVGGGLWTQSHGRSFLAWADVAAASTPLGYTFGRIGNFLNAELYGRITDIPIGMIFPNVPLSDMFPASEPWVREFAQRVGIHVQEGARLVNLPRHPSQIYEAFFEGIVLWCILWCARRVKTYNGFLVCLYVVGYGVFRFFIEYFRQPDAHLGYRFSATQSSPIYLFQSWSDVSTGQILCVLMILAGLGGMFALSAYHKRDSVRKARV >NZ_CP003679.1|WP_010882295.1|921610_923785_+|DUF4954-family-protein MRVQILDLPSFGYHFITQTHIPRGKDEYYLRFSQSAEPPRAWRPLSKEEIHTLIQKGNHCDTWHDVLVADPFDASLIRNSSFAGLVRIASLERRLLRYHDFTVPTGITHSTLISCDVGENCAIHHCAYISHYIIGNHVILSRIDELCTTNHAKFGAGIIKDGEQEAVRITIDPLNETGGRKIFPFVGMIAADAFLWACHRDRTLLMQRFESMTQQQHDTRRGYYGTIETQSVIKSCRIIKDVCFGPGSYVKGANKLKNLTVQSSLQEPTQIGEGVELVNGVIGYGCRVFYGVKAVRFVLGNNCALKYGTRLIHSVLGDNSTISCCEVLNALIFPYHEQHHNNSFLIAALIRGQSNIAAGSTIGSNHNTRKNDGEIIAGRGFWSGLASTLKHNCRFASFVLITGKNYPAELDIPFPFSLVTNNERENRLEIMPAYYWLYNMYAIERNEKKFAARDKRKTKTQTVEISVFAPDTIGEIENALALLDSAIERAWVNAGNSALTAEDIVLKHPTKAQTIPVLLTGIEHSTRSTLVLKPLEARKAYRDILIWYCTKTLLSFFEQTTRCISHFTSHDPKTITHNWVNMGGQLVPEDKFETLLQNIETGKFKSWHHIHKEYDALAATYETDKALHAYAVLCSLARTRIDAPLLCTYVQHAITIEKYRVTQIHKTRCKDYLNPFREITYRNPLERNAVLGTPEEDQLIRTTEEESAHLCALYARYIAPPHLG >NZ_CP003679.1|WP_014342611.1|920908_921430_-|translation-initiation-factor-IF-3 MADNKSLRINGSIRVREVRLVDAVGQQCGVVPTPEALRMARDINLDLVEVAPQASPPVCKILDYGKYRFEMGKKLRDSKKRQRLQTLKEVRMQPKINDHDMAFKAKHIQRFLDEGDKVKVTIRFRGRELAHTDLGFNVLQNVLGRLVCGYSVEKQAAMEGRSMSMTLTPKSKK >NZ_CP003679.1|WP_010882293.1|920655_920856_-|50S-ribosomal-protein-L35 MAKMKTKSAAAKRFSVTGAGKVKFKKMNLRHILTKKAPKRKRKLRHAGFLSKVELKVVKRKLLPYA >NZ_CP003679.1|WP_010882292.1|920254_920623_-|50S-ribosomal-protein-L20 MSRSLSSNGRVRRRKRILKLAKGFRGRCGTNYKAAKDAVSKALAHSYVARRDRKGSMRRLWISRINASVRTQGLSYSRFMNGLLQAGIALNRKVLSNMAIEDPGAFQTVIDASKKALGGGAC >NZ_CP003679.1|WP_014342609.1|919925_920261_-|hypothetical-protein MLNLGQVKVLEEKVAKAVHLVQMLKEENAALRAEIDGRGKRITELEQLVLAFQDDQTKIEEGILKALNHLSTFEDSAYGEALTQHAAKVLENREHAGLSEELTSRTQMEIF >NZ_CP003679.1|WP_010882290.1|919599_919926_-|cell-division-protein-ZapA MVSVKGQLHIDLLGASFSIQADEDSSYLRVLYEHYKMVVLQVEKTSGVRDPLKVAVIAGVLLADELHKEKRRRLVQSEEDLLEIGESTERMLESISKVVDEGFVCGRD >NZ_CP003679.1|WP_014342835.1|936885_938370_+|UPF0164-family-protein MVRRPCVSAAPVRVGGRLVFGFARVGSRGLCLGALLLSPRIVLAQHVADAPLGARGVVPRSSLPRRTRAARATTLRSRGGVVSSRASGGTLVVTAQKPKVMARNDVDYRPLSLQAGGRQGSLDLVATATADDASFFEANAAGSATIPRMTLAFFHTMRISDSHIDVLSFVGRAGRTGYGVSARAFYPDMSSKTTGFVGIFNVSHAFSSAYRFKGVSVGANLKVGYRHTRGGGSSQSKSSNGKENHHIVLTADVGVRGAWTVSKNFGAHEPNLWAGVAFRNIGASINATNLHGNNGAGGSGGGGGGNGDGKPAHVTDSRVILALAYQPVRYFLFGAGLEWLYNVGSIKAVNSLRYGAAFMLFPLRQLAFSSSVVMKGMGPQQVRASAGAEVQFSHVRCTASYSYLWSATPTRPHYVSIGVAGFLKPVPEQPLWQEVYRSYLRGLRHYHAQRYAEAIAEWKRTLQQGVSFEPAREGIERATKLLQLNQKVHDFNIF >NZ_CP003679.1|WP_010882305.1|938444_940352_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing) MCGIVGMVAGRDVSGLLLEGLRRLEYRGYDSAGIAVVGSDCALRLLRCEGRVQSLCALLGQSPLCGTMGIAHTRWATHGKPCAANAHPHCSESVAIVHNGIVENHRSLREMLVTRGYFFHSQTDSEVLAHLLHWELRYTAHLLLAVKKVLTQVRGTYGLLCMDAASPGRLIAARSGSPLAVGLGCGENFVTSDPLALAHVTQRFLYLEEGDIADVHRDSVCVHDAQGNVVARPVVTYQMQLCTQDKGTHRHHMHQEIWQQPHAIRHTLNAYMSFSSSSRAQVRTFGEDRVLDGTSCKTFERLFRRITRVRIIACGTSYHAGLVARYWFEAFAGVGCQVEIASEYRYRTSVVHAREIVLTISQSGETADTIAALRLAKTQGYLCAIAICNGARSTLVRESDAVLLTHAGSEIGVASTKSFTTQLVCLLVLTRMIAQAKKILTQEPEDALSAALQRLPQDVEHVLECEADVARCARHFVHAQHALFLGRGELYPIAIESALKLKEISYIHAEAYAAGELKHGPLALVDAQMPVVAIAPASPGVLFEKMASNIEEVRARGGMLYIFTDVPERFGPVCTPEADAPEGACSQIVTVPSVSPLTAPIFYAVPLQLLAYHIALLKGTDIDQPRNLAKSVTVE >NZ_CP003679.1|WP_010882306.1|940588_941383_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase MILKKEAAGVCSFALLLLAGMSIFSCRKGAEGVSSAGEAADKKALTADQLDPRKVQEQERQKTPLSKKSVGYAFGVLMGVTLQDSKLDVDLGQVWKGLKKTVSADKDKQALADAQDVLQRAFEAYRQKEVEKNSQEAKAFLEENAKKPGVQVTSSGLQYEVVKAADGPKPQGGQRVRTQYKGTLLDGTVFDASRDKPAEFPVDGMVPGVSEGLKLMPVGSTYRFYVPSSLGYGERGIEGVIPPGALLVFEIELQEILPDSASKK >NZ_CP003679.1|WP_010882307.1|941517_942801_+|cysteine-desulfurase MNLYLDWAAAAIPETRLILRETQQACTLFANPSAVHCLGNDARDALERARHTCAQSLGINPERLIFTSGGSEANQLALLSVLTRLPHAEISVSMLEHASVTALLPRLERLQVSVRHIPVNARGFITPEAVRATLSPRTTLVCVSAVHSETGAIQPLPAIAHVLAHTGTRGRSIQLHVDAAQAFGKIPLNLYMDLPRIEEHAQENNAPQTPPGYPAPTAQRALTYSVAISGHKIGAPRGIGLLCAHRSFTPFVLGGGQEKERRPGTENLAGALALAACVREGAFFRTLHTTPEGPTPHTKPTAPAGLRSVRARTCAFVRALSDLPRVQLVPATRKEDEAHFSPYIVCCAVQDASGEALVRAFSDAGVCISTGSACSTKKGGVSTRLLRALGVESRATRGVLRFSFGPHTTAEDLDRVLTLFRTLLQKL >NZ_CP003679.1|WP_010882308.1|942859_944500_-|M23-family-metallopeptidase MRPARCVLYTGRAPCGSKTSGTLLGTPPPVALQAKCSTPGINVPIPPVMDVITYTGADLVPDHARGCEPFSVCPSPAEVRRAVLSSSAFSDSGGARARTRNRLVPRFPLEEEIISFHESPDTLDIPESGSGVSGRLGGGRGLRARYAKWSTRAEARLIRAQALNASGLLSSISNRSVRVSRRRGIGGMRFFRREKSARTPLARTAVPRFSFPSFSVPVRSLQDASCVPLCAALACALLFVLMVLCIPWAVHVTGGRRLALVRFETDSTLAHALRRGVFRAEEVETREGGANAAALAEALDTQLATVSYRTYTVRKGDTISAIALRAGLKHMGTLLSVNGISNARRLSVGDQITIPSMDGLMHTVQKGQSLSAIASLFRLPLNTLLDANDLVSRALTVGQRLFIPGAKLSAFDLRKVLGELFMYPIRGRRTSGFGYRSDPFSGKRSFHNGIDLAAPYGTQVKATLDGKVAEIGYSRIYGNYLIIVHGGGYQTMYGHLSSVMVGRGARVVQGTTIGRVGASGRATGPHLHFSVFKNGSVVNPLKILTK >NZ_CP003679.1|WP_025267613.1|944533_945973_-|UPF0164-family-protein MVRMRRRRACSSGGACGCAAVRGARSFLSVRVLGMRVGMSALCLAPLFARTASLGAWSSQGGEVLGEVRARVPAHRRVRRAVSGTSVTSAVAMIAKASKQSEGVGRRALSLRTGGRYEMLGLAFTALADDASFFEANAAGSAAFPYLLVGGFHFARVNQSHTDTIALVHSIGRTGYGFSASVQYLHLPMAGKPVGGVAIFNVAHRFLSAYRFKGISVGTNVKVGYRDSSAGGERNKKNQGGKKHVVVTADIGLQGTWSVAKNFGSHEPNLWVGGTVKNVGLSVEVDASGSGSSASAGRTVHATNSSFILACAYQPIRWFLFGTGIEWKYNVQEFADNNRFRYGVAFLLLPVQYVAFGSSVFLTGLAPDIRASAGVEFKSTWVRVDLTYTYESDKNEHVISCGIAGFFNRDRRKHLEKEVYTSYLRGLRHYDAQHYEEAIAEWRRTLQRAGSFEPAREGIERATKLLQLNRQVYDFHFLH >NZ_CP003679.1|WP_014342837.1|946060_947992_-|ATP-binding-protein MSFSAFGYEGEVIKVEVDLRRGLPVVDIVGLPGSAVKEAKERIRAAIRNAALPFPQERILINLSPADLKKEGSAFDLPIALAVLRAQVHASSAEETPELTGGARGCAREVRRVMVLGELELSGRIRPVRGTLAAVAAGLSAHIYDYIVPKENEAEARITPGVRVFAVQELRAALVACQQLAVEPQDAPHEQSAPGWGQSNSVLLWEGKQVSVEDTAHRVHLPADTGASVHQDAGMDAGAIMALFPKRCPGAVGETGARPEGTAPGVSPFLFSVGRSTGDASDSAGGTGQERPVQHWPHAALGVTGGFEDVRGQRKLIRALQIAAAGGHHLIAYGAPGCGKTLSLSRFALLLPDLDARTALEVTRVHSIAGLLPKGAEQDPLMRRPPCRTPHSSASAEGIIGGAGTCLPGEISLAHGGVLFLDEATQFKRPVLETLRTPLETGQITVSRAGKSSTYPARFQLLLAVNPCACGNFGVQHKVCTCAPQAVERYWRKLTAPLLDRVDLRVEVLPPASHTLLSEPACCTARLRKTVACALEAQWERQGSCLCAPINGRSSTVEDWIRYRNARLSPENVQRWCMLTDDAAREFHRAVGKEQLSGRGGHAVLKIARTIADIEGVARLQVAHVQEAVALRTWSALLPHSLT >NZ_CP003679.1|WP_010882310.1|947966_948152_-|hypothetical-protein MRWLCRLIGYRYGYAVCGGYRRQGGRCSAQLHAQYTRVSHCVLRIAWEVNGADYELFRLWI >NZ_CP003679.1|WP_014342625.1|948130_948331_-|hypothetical-protein MIIMHSSVESLTFLQDVRALQGPVHRTRAETGQSYFRKNGKGLEVFFAFFVTFLGRYVRVCVGYAG >NZ_CP003679.1|WP_010882311.1|948320_949181_+|flagellin MIINHNMSAMFAQRTLGHTNVQVGKGIEKLSSGYRINRAGDDASGLAVSEKMRSQIRGLNQASTNASNGVNFIQVTEAYLQETTDIMQRIRELAIQAANGIYSAEDRMQIQVEVSQLVAEVDRIASSAQFNGMNLLTGRFSRTEGENVIGGSMWFHIGANMDQRMRVYIGTMTAVALGVRNGVDESIMSIETADSANKSIGTIDAALKRINKQRADLGGYQNRMEYTVVGLDIAAENLQAAESRIRDANIAKQMVEYTKNQVLTQSGTAMLAQANTSAQSILSILR |
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| CRISPR_ID | Spacer_Info | Spacer_region | Spacer_length | Hit_ID | Protospacer_location | Mismatch | Identity |
|---|
| CRISPR_ID | Spacer_Info | Spacer_region | Spacer_length | Hit_phage_ID | Hit_phage_def | Protospacer_location | Mismatch | Identity |
|---|
| Region | Region Position | Protein_number | Hit_taxonomy | Key_proteins | Att_site | Prophage annotation |
|---|
| Acr ID | Acr position | Acr size | Homology with known anti | Neighbor HTH/AcRanker | Neighbor Aca | In prophage | Protospacer in prophage |
|---|