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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007539 Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome 12 crisprs csa3,DEDDh,cas3,DinG 15 5 11 1

Results visualization

1. NZ_CP007539
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_1 59271-59464 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_2 183480-183560 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_3 375580-375658 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_4 533829-534052 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_5 1202142-1202328 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_6 1206166-1206422 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_7 1420213-1420521 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_8 1485204-1485285 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_9 1521172-1521264 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_10 1533763-1533843 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_11 1690882-1690974 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007539_12 1926942-1927043 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 374150-374186 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 905531-905567 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 993938-993974 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 1574871-1574907 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 1575841-1575877 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 1691900-1691936 0 1.0
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 2235155-2235191 0 1.0
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 993996-994032 0 1.0
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 1303073-1303109 0 1.0
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 1965656-1965692 0 1.0
NZ_CP007539_8 8.1|1485228|34|NZ_CP007539|CRISPRCasFinder 1485228-1485261 34 NZ_CP007539.2 905514-905547 0 1.0
NZ_CP007539_8 8.1|1485228|34|NZ_CP007539|CRISPRCasFinder 1485228-1485261 34 NZ_CP007539.2 993958-993991 0 1.0
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 2426936-2426964 0 1.0
NZ_CP007539_1 1.2|59350|36|NZ_CP007539|CRT 59350-59385 36 NZ_CP007539.2 534120-534155 1 0.972
NZ_CP007539_3 3.1|375603|33|NZ_CP007539|CRISPRCasFinder 375603-375635 33 NZ_CP007539.2 712772-712804 1 0.97
NZ_CP007539_3 3.1|375603|33|NZ_CP007539|CRISPRCasFinder 375603-375635 33 NZ_CP007539.2 994004-994036 1 0.97
NZ_CP007539_3 3.1|375603|33|NZ_CP007539|CRISPRCasFinder 375603-375635 33 NZ_CP007539.2 2592328-2592360 1 0.97
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 1276813-1276849 1 0.973
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 2703052-2703088 1 0.973
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 712776-712812 1 0.973
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 905473-905509 1 0.973
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 2592332-2592368 1 0.973
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 534115-534151 1 0.973
NZ_CP007539_6 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder 1206249-1206278 30 NZ_CP007539.2 1206418-1206447 1 0.967
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 534120-534148 1 0.966
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 1965492-1965520 1 0.966
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 1965547-1965575 1 0.966
NZ_CP007539_1 1.1|59294|33|NZ_CP007539|CRT 59294-59326 33 NZ_CP007539.2 994004-994036 2 0.939
NZ_CP007539_1 1.1|59294|33|NZ_CP007539|CRT 59294-59326 33 NZ_CP007539.2 1528403-1528435 2 0.939
NZ_CP007539_1 1.1|59294|33|NZ_CP007539|CRT 59294-59326 33 NZ_CP007539.2 2592328-2592360 2 0.939
NZ_CP007539_1 1.2|59350|36|NZ_CP007539|CRT 59350-59385 36 NZ_CP007539.2 364856-364891 2 0.944
NZ_CP007539_1 1.2|59350|36|NZ_CP007539|CRT 59350-59385 36 NZ_CP007539.2 712830-712865 2 0.944
NZ_CP007539_1 1.3|59409|33|NZ_CP007539|CRT 59409-59441 33 NZ_CP007539.2 905469-905501 2 0.939
NZ_CP007539_1 1.3|59409|33|NZ_CP007539|CRT 59409-59441 33 NZ_CP007539.2 994004-994036 2 0.939
NZ_CP007539_1 1.3|59409|33|NZ_CP007539|CRT 59409-59441 33 NZ_CP007539.2 2592328-2592360 2 0.939
NZ_CP007539_3 3.1|375603|33|NZ_CP007539|CRISPRCasFinder 375603-375635 33 NZ_CP007539.2 905469-905501 2 0.939
NZ_CP007539_5 5.1|1202161|37|NZ_CP007539|CRT 1202161-1202197 37 NZ_CP007539.2 1206129-1206165 2 0.946
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 1202105-1202141 2 0.946
NZ_CP007539_5 5.2|1202217|37|NZ_CP007539|CRT 1202217-1202253 37 NZ_CP007539.2 1528407-1528443 2 0.946
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 364860-364896 2 0.946
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 712834-712870 2 0.946
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 1485188-1485224 2 0.946
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 2426933-2426969 2 0.946
NZ_CP007539_5 5.3|1202273|37|NZ_CP007539|CRT 1202273-1202309 37 NZ_CP007539.2 2677769-2677805 2 0.946
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 994004-994032 2 0.931
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 1202113-1202141 2 0.931
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 1303073-1303101 2 0.931
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 1528407-1528435 2 0.931
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 1965664-1965692 2 0.931
NZ_CP007539_6 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder 1206193-1206221 29 NZ_CP007539.2 2592332-2592360 2 0.931
NZ_CP007539_6 6.6|1206367|37|NZ_CP007539|CRT 1206367-1206403 37 NZ_CP007539.2 303262-303298 2 0.946
NZ_CP007539_7 7.2|1420326|26|NZ_CP007539|CRT 1420326-1420351 26 NZ_CP007539.2 1965684-1965709 2 0.923
NZ_CP007539_7 7.4|1420440|26|NZ_CP007539|CRT 1420440-1420465 26 NZ_CP007539.2 1202133-1202158 2 0.923
NZ_CP007539_7 7.4|1420440|26|NZ_CP007539|CRT 1420440-1420465 26 NZ_CP007539.2 1565398-1565423 2 0.923
NZ_CP007539_7 7.4|1420440|26|NZ_CP007539|CRT 1420440-1420465 26 NZ_CP007539.2 2426971-2426996 2 0.923
NZ_CP007539_7 7.5|1420466|33|NZ_CP007539|CRISPRCasFinder 1420466-1420498 33 NZ_CP007539.2 1484924-1484956 2 0.939
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 364863-364891 2 0.931
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 712837-712865 2 0.931
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 1400798-1400826 2 0.931
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 1485191-1485219 2 0.931
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 NZ_CP007539.2 2677774-2677802 2 0.931

1. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 374150-374186, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

2. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 905531-905567, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

3. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 993938-993974, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

4. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 1574871-1574907, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

5. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 1575841-1575877, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

6. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 1691900-1691936, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

7. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 2235155-2235191, mismatch: 0, identity: 1.0

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattgggaatccaatttc	Protospacer
*************************************

8. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 993996-994032, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgacttttcgtcagct	Protospacer
*************************************

9. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 1303073-1303109, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgacttttcgtcagct	Protospacer
*************************************

10. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 1965656-1965692, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgacttttcgtcagct	Protospacer
*************************************

11. spacer 8.1|1485228|34|NZ_CP007539|CRISPRCasFinder matches to position: 905514-905547, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

12. spacer 8.1|1485228|34|NZ_CP007539|CRISPRCasFinder matches to position: 993958-993991, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

13. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 2426936-2426964, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaaacaatgca	Protospacer
*****************************

14. spacer 1.2|59350|36|NZ_CP007539|CRT matches to position: 534120-534155, mismatch: 1, identity: 0.972

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacagacaatgca	Protospacer
***********.************************

15. spacer 3.1|375603|33|NZ_CP007539|CRISPRCasFinder matches to position: 712772-712804, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

16. spacer 3.1|375603|33|NZ_CP007539|CRISPRCasFinder matches to position: 994004-994036, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

17. spacer 3.1|375603|33|NZ_CP007539|CRISPRCasFinder matches to position: 2592328-2592360, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

18. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 1276813-1276849, mismatch: 1, identity: 0.973

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttacattgtctgtagaaattgggaatccaatttc	Protospacer
*****.*******************************

19. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 2703052-2703088, mismatch: 1, identity: 0.973

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctctagaaattgggaatccaatttc	Protospacer
************** **********************

20. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 712776-712812, mismatch: 1, identity: 0.973

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattatagtaagctgacttttcgtcagct	Protospacer
************** **********************

21. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 905473-905509, mismatch: 1, identity: 0.973

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgacttttcgtcatct	Protospacer
********************************** **

22. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 2592332-2592368, mismatch: 1, identity: 0.973

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aactcgcacattattgtaagctgacttttcgtcagct	Protospacer
****.********************************

23. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 534115-534151, mismatch: 1, identity: 0.973

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgtctgtagaatttcttttcgaaattc	Protospacer
*****************************.*******

24. spacer 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder matches to position: 1206418-1206447, mismatch: 1, identity: 0.967

attgtttgttggaattggtgatcctatttc	CRISPR spacer
attgtctgttggaattggtgatcctatttc	Protospacer
*****.************************

25. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 534120-534148, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

26. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 1965492-1965520, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

27. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 1965547-1965575, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

28. spacer 1.1|59294|33|NZ_CP007539|CRT matches to position: 994004-994036, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

29. spacer 1.1|59294|33|NZ_CP007539|CRT matches to position: 1528403-1528435, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*********.*.*********************

30. spacer 1.1|59294|33|NZ_CP007539|CRT matches to position: 2592328-2592360, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

31. spacer 1.2|59350|36|NZ_CP007539|CRT matches to position: 364856-364891, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

32. spacer 1.2|59350|36|NZ_CP007539|CRT matches to position: 712830-712865, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

33. spacer 1.3|59409|33|NZ_CP007539|CRT matches to position: 905469-905501, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

34. spacer 1.3|59409|33|NZ_CP007539|CRT matches to position: 994004-994036, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

35. spacer 1.3|59409|33|NZ_CP007539|CRT matches to position: 2592328-2592360, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

36. spacer 3.1|375603|33|NZ_CP007539|CRISPRCasFinder matches to position: 905469-905501, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

37. spacer 5.1|1202161|37|NZ_CP007539|CRT matches to position: 1206129-1206165, mismatch: 2, identity: 0.946

aacttgcattgtctgtagaaattgggaatccaatttc	CRISPR spacer
aacttgcattgtctgtagaaattggggttccaatttc	Protospacer
**************************. *********

38. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 1202105-1202141, mismatch: 2, identity: 0.946

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgactttccgccagct	Protospacer
****************************.**.*****

39. spacer 5.2|1202217|37|NZ_CP007539|CRT matches to position: 1528407-1528443, mismatch: 2, identity: 0.946

aacttgcacattattgtaagctgacttttcgtcagct	CRISPR spacer
aacttgcacattattgtaagctgactttccgccagct	Protospacer
****************************.**.*****

40. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 364860-364896, mismatch: 2, identity: 0.946

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgtctgtagaatttcctttcgaaattc	Protospacer
*************************.***.*******

41. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 712834-712870, mismatch: 2, identity: 0.946

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
************.****************.*******

42. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 1485188-1485224, mismatch: 2, identity: 0.946

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
************.****************.*******

43. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 2426933-2426969, mismatch: 2, identity: 0.946

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgtttgtagaatttcttttcgaaattc	Protospacer
*************.***************.*******

44. spacer 5.3|1202273|37|NZ_CP007539|CRT matches to position: 2677769-2677805, mismatch: 2, identity: 0.946

caacttgcattgtctgtagaatttctttttgaaattc	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
************.****************.*******

45. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 994004-994032, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

46. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 1202113-1202141, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgactttccgccagct	Protospacer
**** ***************.********

47. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 1303073-1303101, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

48. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 1528407-1528435, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgactttccgccagct	Protospacer
**** ***************.********

49. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 1965664-1965692, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

50. spacer 6.1|1206193|29|NZ_CP007539|CRISPRCasFinder matches to position: 2592332-2592360, mismatch: 2, identity: 0.931

catttttgtaagctgacttttcgccagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ******************.*****

51. spacer 6.6|1206367|37|NZ_CP007539|CRT matches to position: 303262-303298, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgtagaaattggtgttccaatttctctatgttgggg	Protospacer
**** ********** *********************

52. spacer 7.2|1420326|26|NZ_CP007539|CRT matches to position: 1965684-1965709, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

53. spacer 7.4|1420440|26|NZ_CP007539|CRT matches to position: 1202133-1202158, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********.***.*************

54. spacer 7.4|1420440|26|NZ_CP007539|CRT matches to position: 1565398-1565423, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

55. spacer 7.4|1420440|26|NZ_CP007539|CRT matches to position: 2426971-2426996, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********.***.*************

56. spacer 7.5|1420466|33|NZ_CP007539|CRISPRCasFinder matches to position: 1484924-1484956, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

57. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 364863-364891, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaggaaattctacagacaatgca	Protospacer
********.***********.********

58. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 712837-712865, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

59. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 1400798-1400826, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

60. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 1485191-1485219, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

61. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to position: 2677774-2677802, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007539_7 7.1|1420243|53|NZ_CP007539|CRT 1420243-1420295 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP007539_7 7.2|1420326|26|NZ_CP007539|CRT 1420326-1420351 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP007539_6 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder 1206249-1206278 30 NZ_LR215032 Mycoplasma gallopavonis strain NCTC10186 plasmid 2 268766-268795 6 0.8
NZ_CP007539_6 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder 1206249-1206278 30 MN856116 Myoviridae sp. isolate 525, complete genome 4992-5021 7 0.767
NZ_CP007539_10 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder 1533789-1533817 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759
NZ_CP007539_3 3.1|375603|33|NZ_CP007539|CRISPRCasFinder 375603-375635 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 7.1|1420243|53|NZ_CP007539|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 7.2|1420326|26|NZ_CP007539|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 6, identity: 0.8

-attgtttgttggaattggtgatcctatttc	CRISPR spacer
tactg-ttgttggaattggtggtccaattaa	Protospacer
 *.** ***************.*** ***  

4. spacer 6.2|1206249|30|NZ_CP007539|CRISPRCasFinder matches to MN856116 (Myoviridae sp. isolate 525, complete genome) position: , mismatch: 7, identity: 0.767

attgt-ttgttggaattggtgatcctatttc	CRISPR spacer
-tggcattgttggaattggttttcctattgt	Protospacer
 * *. **************  ******* .

5. spacer 10.1|1533789|29|NZ_CP007539|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
cacttagaagaaatcctacaaacaatgca	Protospacer
. .. *.*******.**************

6. spacer 3.1|375603|33|NZ_CP007539|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 410207 : 471052 57 Staphylococcus_phage(87.5%) protease,tRNA,transposase NA
DBSCAN-SWA_2 477782 : 513032 40 Staphylococcus_phage(90.91%) protease,transposase NA
DBSCAN-SWA_3 516192 : 528921 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_4 654749 : 663792 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 732929 : 741241 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1293122 : 1301595 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1321582 : 1369167 48 Enterococcus_phage(20.0%) bacteriocin,protease NA
DBSCAN-SWA_8 1462513 : 1483722 33 Staphylococcus_phage(77.78%) integrase,coat,terminase,capsid attL 1465235:1465251|attR 1481170:1481186
DBSCAN-SWA_9 1562208 : 1576995 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_10 1588967 : 1596787 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_11 1987002 : 2029734 70 Staphylococcus_phage(87.14%) portal,terminase,integrase,plate,tail,protease,holin,head,capsid attL 1986252:1986269|attR 2029828:2029845
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP007539.2|WP_001790641.1|1573254_1573356_-|hypothetical-protein 1573254_1573356_- 33 aa aa NA NA NA 1562208-1576995 yes