CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007444	Dyella jiangningensis strain SBZ 3-12, complete genome	3 crisprs	csa3,DEDDh,DinG,cas3,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007444_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007444_1

1192527-1192609

Orphan

Consensus_repeat	Method
AAAGCGGCCATCCATAGCCGCACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007444_1

>merge|NZ_CP007444|1|1192527-1192609|CRISPRCasFinder
AAAGCGGCCATCCATAGCCGCACTATTCAAATTTGGTGCGCTCATCCTGAGCGAAGATCAAAGCGGCCATCCATGGCCGCACT

>NZ_CP007444|1|1|1192527-1192609|CRISPRCasFinder
AAAGCGGCCATCCATAGCCGCACT	ATTCAAATTTGGTGCGCTCATCCTGAGCGAAGATC
AAAGCGGCCATCCATGGCCGCACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007444.1\|WP_038616938.1\|1188972_1189569_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP007444.1\|WP_038616942.1\|1191271_1192480_-\|dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP007444.1\|WP_038616924.1\|1180537_1183186_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP007444.1\|WP_038616940.1\|1189705_1191130_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP007444.1\|WP_038616951.1\|1199868_1201563_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP007444.1\|WP_038616944.1\|1192622_1195469_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP007444.1\|WP_038616930.1\|1185824_1186304_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP007444.1\|WP_038616936.1\|1187939_1188947_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP007444.1\|WP_038616957.1\|1207989_1208931_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP007444.1\|WP_038616926.1\|1183245_1185246_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP007444.1\|WP_038616934.1\|1187504_1187870_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP007444.1\|WP_038616953.1\|1205153_1206170_-\|CysB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183677
NZ_CP007444.1\|WP_038616948.1\|1196665_1197859_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP007444.1\|WP_038616932.1\|1186535_1187435_+\|cytochrome-c-biogenesis-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP007444.1\|WP_038616946.1\|1195718_1196669_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP007444.1\|WP_038616928.1\|1185368_1185749_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NZ_CP007444.1\|WP_081804295.1\|1198037_1199867_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273882
NZ_CP007444.1\|WP_051595689.1\|1202351_1204112_+\|adenylyltransferase	unknown	unknown	gnl\|CDD\|180124
NZ_CP007444.1\|WP_051595236.1\|1201559_1202282_+\|phosphoadenylyl-sulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007444.1\|WP_038616955.1\|1206495_1207914_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606

Protein	Function_ID	Function_description	E-value
NZ_CP007444.1\|WP_038616938.1\|1188972_1189569_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	2.72399e-59
NZ_CP007444.1\|WP_038616942.1\|1191271_1192480_-\|dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP007444.1\|WP_038616924.1\|1180537_1183186_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP007444.1\|WP_038616940.1\|1189705_1191130_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP007444.1\|WP_038616951.1\|1199868_1201563_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP007444.1\|WP_038616944.1\|1192622_1195469_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP007444.1\|WP_038616930.1\|1185824_1186304_-\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	4.13459e-71
NZ_CP007444.1\|WP_038616936.1\|1187939_1188947_-\|quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.63559e-164
NZ_CP007444.1\|WP_038616957.1\|1207989_1208931_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	4.79598e-154
NZ_CP007444.1\|WP_038616926.1\|1183245_1185246_-\|hypothetical-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	2.60945e-45
NZ_CP007444.1\|WP_038616934.1\|1187504_1187870_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.15654e-35
NZ_CP007444.1\|WP_038616953.1\|1205153_1206170_-\|CysB-family-transcriptional-regulator	gnl\|CDD\|183677	PRK12680, PRK12680, LysR family transcriptional regulator.	7.63468e-125
NZ_CP007444.1\|WP_038616948.1\|1196665_1197859_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	1.89065e-111
NZ_CP007444.1\|WP_038616932.1\|1186535_1187435_+\|cytochrome-c-biogenesis-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.401e-80
NZ_CP007444.1\|WP_038616946.1\|1195718_1196669_-\|N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.26511e-23
NZ_CP007444.1\|WP_038616928.1\|1185368_1185749_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	1.27763e-46
NZ_CP007444.1\|WP_081804295.1\|1198037_1199867_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|273882	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.	0
NZ_CP007444.1\|WP_051595689.1\|1202351_1204112_+\|adenylyltransferase	gnl\|CDD\|180124	PRK05537, PRK05537, bifunctional sulfate adenylyltransferase/adenylylsulfate kinase.	0
NZ_CP007444.1\|WP_051595236.1\|1201559_1202282_+\|phosphoadenylyl-sulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.06735e-117
NZ_CP007444.1\|WP_038616955.1\|1206495_1207914_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	6.22184e-179

>NZ_CP007444.1|WP_038616942.1|1191271_1192480_-|dihydrolipoyllysine-residue-succinyltransferase
MSIEVKVPVLPESVSDATIATWHKKAGEAVKRDENLVDLETDKVVLEVPSPVDGVLKEIKFQSGDTVTSQQVIAVIEEGAAAAAPAPAAAAPAPAAAPAAAPAAPAAAKAGNADLSPAGLRVATEQNIDASKVAGTGRDGRVTKEDLVNYGKGGAAPAAAAPAATPTPGSRPEERVPMTRMRARIAERLMQSKNSIAMLTSFNEVNLAEVVKMRKSLGEAFEKSNGVKLGFMSFFVKAAAEALKRHPIVNASVDGNDIIYHGYQDISIAVSTDKGLVTPVLRDVQDKSFADIEKGILDYAKKARDGKLGLDDLQGGTFTITNGGTFGSLLSTPIVNPPQSAILGMHAIKERAIVENGQVIAAPMMYLALSYDHRIIDGKDAVLFLVDIKNQLENPQRMLLGI
>NZ_CP007444.1|WP_038616940.1|1189705_1191130_-|dihydrolipoyl-dehydrogenase
MSEKFDVIVIGAGPAGYVAAIRAAQLGLKTACVDAFVGKDGKQALGGTCLNVGCIPSKALLDSSKQYYNIAHNLPVHGITVEGAKVDLGTFIGRKDKIVKQFTGGIGQLFKANKVTPFFGKGKLLKGNEVEITGNDGAKQTISATNVILASGSVPIELPFAKFDNKFIVDNAGALDFTEVPKRLGVIGAGVIGLELGSVWKRLGADVTVLEALPDFLNVADADIAKIAAKEFAKLGLNIKLGAKLTKAEIKKNEVALTYEDKDGAHELVVDKLLVAVGRRAYTDGLLADDTGVKLDERGRIVVDEHNHTGVNGVWAIGDAVRGPMLAHKGSEEGVAVAEWIAGKAGHINLDTVPWVIYTEPEIAWAGKTEKQLKEEGVPYKVGTFPFAAIGRAVAMNEAIGQVKMLAHAETDRILGVHMVGPGVSELIAECVVAMEFKGSSEDLARIVHAHPTLSEAVHEAALSVDKRAIHKGN
>NZ_CP007444.1|WP_038616938.1|1188972_1189569_-|TIGR00730-family-Rossman-fold-protein
MSQPTALCVYCGSSSGKHPEYVEQARAFGAEMARRGIALVYGGGKVGLMGTVADAVLAGGGKVIGVIPRQLVDLEVAHADLSELVVVETMHQRKTRMFELSDAFVALPGGFGTMDEMFEMLTWAQLGLHRYPCAFLDVRGYYTQLRAMMDHMVDERFVRPEQRESVWFGQDMQQLFDWMESYEGSYMPKWIDRSSVDA
>NZ_CP007444.1|WP_038616936.1|1187939_1188947_-|quinone-oxidoreductase
MNTPSLFRAFRIHNDDAGYRGGIETINADALSPGEVLVQVAYSSVNYKDALAGTGKGKILRQYPLNGGIDVAGTVIASTDPAFKEGDAVLCTGSGLSEVRDGGYGEYIRLPSAWTIPLPKGLSLRESMIIGTAGFTAALALLRMEDNRQTPALGPLAVTGATGGVGMLAIDIFTRAGYDVHAISGKNTHFDFLRDLGAAECIDRHQLAFSGKPMDSARFGGALDNVGGAMLAGLLPLIAPYGNVAICGNAGGIGLETTVMPFIIRGASLLGIASAGTARDIRDRVWQRLATDWKPQHLERIATREVTLEQLPAIFDHMLAGESFGRTLVRVGAHA
>NZ_CP007444.1|WP_038616934.1|1187504_1187870_-|response-regulator
MARILIVDDSPSQLLGIKRIVEKLGHEALTAEDGAAGVEAARRERPDLILMDVVMPNLNGFQATRTISKDPDTSHIPVVLVTTKDQETDKVWGLRQGAKAYVTKPIKEEELVTTLKELLPA
>NZ_CP007444.1|WP_038616932.1|1186535_1187435_+|cytochrome-c-biogenesis-protein
MEFKDYYDILGVKPEATEAEIKAAYRKLAKKYHPDRNKDAGAEEKFKAINEANEVLRDAEKRRAYDELRAGGYRGGEQFRPPPGWGQSHGFDFGGEGGGDFSDFFESLFGRSAGGPRGAPRARRGGDVHAHVQIDLQTAFDGGRTRLALQDGHGGERVLEVKIPAGIQPGQVIRLAGQGHAGSGGAPNGDLLLEVGIRDDARFKLDGRNVLHVLPIAPWEAALGATVPVPTLAGTVDLRIPAGSQSGRKLRLKGRGLPGAHPGDQLVELSIRTPIADSDEQRKAYESLRDAFEAYDPRH
>NZ_CP007444.1|WP_038616930.1|1185824_1186304_-|peroxiredoxin
MSIQVGQTLPDIEIRAIGEGIEQTGTAALFAGRNVVMFAVPGAFTPTCSNRHLPGYVQHYAEFQARGIDVMCLAVNDAYVMQAWAASQNVPHSLLMLADGNGSFTRALGLELDGSGYGMGLRSRRFALYAENGVVKVLQVEAPGEFRVSSAEAMLEAIA
>NZ_CP007444.1|WP_038616928.1|1185368_1185749_-|DUF427-domain-containing-protein
MNSRVQRIPGPDHPIEVSPESSHIVVRIGGRVLADTRSALTLREASYPPVHYIPRKDVDMSLLERTDHHTYCPYKGDCSYYSIPLGGDRSINAVWTYEHPYDAVADIKDHLAFYGTRVDEISVTPA
>NZ_CP007444.1|WP_038616926.1|1183245_1185246_-|hypothetical-protein
MKLECAVAFVIAGVLASASSGIHAQSNPANEQGTFVLHKFARAIGKETYTLDRKDGQLQLTSDFLFTDRGTPVPLKTDYRAADEAHPLSLTTRGKSSRSSDLNDDFAIDATRTHVSLVRDGKKTLYPANDHTFLMDGYSPVAMQQMLMRYWLSQGRPARIAAPPGNDIHIQPTSDLHIKVADRDVTLHGYQVSGLAWGSEALWMDDNNQLAALATRDAEFDHFEAVREAYEPALGTFIQRAANDGLASLAQLAAKGRQPIVKRLVVTNVTLIDGTGAPAQDDVAVFMDDGRISRIAHAKDHASTKGYEIVDGHGKFLIPGLWDMHAHYEQVEWGPVYLASGVTTVRDCGNVFDFITAVRDAIDQGRGIGPRILIAGVIDGTGPITLGAVIADTPEQAKAWVKRYKDVGARQIKIYSSMKPELVPVITAEAHRLGMTVTGHVPEGMTSEQVVKDGYDGINHVHFVARDLLHMERNKPLPPLDFTTPDATRQLALFREHHTVIDDTIVLFETQMHPQTTPLSAIEPGITHVAPELAAALDSPGVPPERAKRYDYLLATLRELHRQGLPIVAGTDQAIPGYSLHRELEIYVQAGFTPMEALMAATSVPARVMGLDKEVGTLTVGKRADMVLLDGDPLADIHNTRRIAKTIEAGAVYDPAPLWQSVGFTP
>NZ_CP007444.1|WP_038616924.1|1180537_1183186_+|DNA-gyrase-subunit-A
MAELAKEVIRVNIEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNAWNKPYKKSARVVGDVIGKYHPHGDASVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMSRLTQELLADIDKDTVDFGPNYDESEQEPLVLPTRVPNLLVNGSAGIAVGMATNVPPHNLNEVISATIALIDDPSLSIDDLMQYIPGPDFPTAGIINGSSGIIEAYRTGRGRILVRARTEIETESNGRETILVHELPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIEIRRDAMADVVLNNLFQQTQLQVTFGINMVALLDGQPRLLNLKDILEAFIRHRREVVTRRTIFELRKARARAHILEGLTVALANIDEMIELIRTSASPQEARERMLARKWQPGMVATLLQAAGAEASRPEDMDPRDGLKAEGYQLSEVQAQEILAMRLHRLTGLEQEKLSDEYRQVLETIRGLIQILEDPARLLAVIRDELIVINEEFGDKRRTEIQHSQEDLNVLDLIAPEDVVVTLSHTGYVKRQPASTYRAQRRGGKGRSASALKDEDFVEQLWVVNTHDTLLTFTSTGRVYWLNVYQMPDSGPNARGKPMVNLLPLGEGEKVQAVLPVREYTEDRFVFFATKQGTVKKTPLTEFAFQLQKGKIAINLDEGDALVNVALTDGNSDVLLFASNGKTVRFDESEVRSMGRTATGVRGMRLADDATVVSLIVAAEGDILTATERGYGKRTVLDEFPKKGRGTQGVIGIQCSERNGALVAATQVTEAHEMMLISDQGTLVRTRVAEVSQLSRNTQGVTLIRLPADEKLVSVVRLDAETESAEGEEGAAPDAIGDDVSTASDGTSGDVPETGDDTPGDGE
>NZ_CP007444.1|WP_038616944.1|1192622_1195469_-|2-oxoglutarate-dehydrogenase-E1-component
MSTNLIREFFESSQLAGGNADYVEQLYESWLADPSSVDATWGKYFETFKGRESGDVPHSAAIARIEAAQKQRRNGVAVAAGPVDDAHARKQAGVLRILTAYRSRGHLAADLDPLGLAEKLPAPDLEPVFHGLSDADLDTEFDCGNFAGGGQRMKLRDLLARLKKVYTNTLGVEFMHISNHEQRNWIYTRLEKANGSAGLDAAGKKRILAELTAAEGLERYLHTKYVGQKRFSLEGGDSLIPMVDDVVRAAGDNGIKEVVIGMAHRGRLNMLVNILGKPPRTLFNEFEGKWDHPDDPAHSGDVKYHMGFSADVKTPNGGTHVALAFNPSHLEIVNPVVAGSVHSRQIRRRDTERKQSMAVIVHGDSALAGQGVNMELFNMSQARGFKIGGSLHIVVNNQVGFTTSNPQDTRSTLYCTDLAKMVNAPVFHVNGDDPEAVIQATRLAYDFRKEFRKDVVIDLVCYRRHGHNEADEPSATQPVMYQIIRKRPTTRDLYAQELVKQGVIADGDGQKMFEDYRSRLEAGEPMTELTTALIKDIEVDWDKFIGGKLSTETPTGYSKQRLVELANQILVVPKDMTLQSRVAKIYDDRAKMAAGELPGDWGFAENLAYATLIDESYNLRLVGQDVGRGTFFHRHAVLHDQKTGYTYMPLADVRSGADVEVIDSLLSEEAVMAFEYGSATTDPYTLHIWEGQFGDFANGAQVVIDQFISSGESKWNRLCGLALFLPHGYEGQGPEHSSARLERFLQLCALDNMQVCVPTTPAQAFHMIRRQMVRPTRKPLIVMTPKSLLRHKLAVSTLDELATGSFQLVIPEHRELAAKKVKRVVLCSGKVYYDLLEDAEKRGLTDVAIVRVEQLYPFPRPQVTAELEKYSGAKEVIWCQEEPMNQGAWFQIRHHLQACIGSKQSLSYAGRARSPAPAAGHLNTHVAEQAALVEQALVAPIGTDHSAE
>NZ_CP007444.1|WP_038616946.1|1195718_1196669_-|N-acetyltransferase
MKLQDFHVEHADWGRAGDREALRSIRLEVFVREQAVPESLEWDDLDPPSFHLLARGENGEPIGCARLTPEGRISRVAVRQPWRGQGVGLALLRALVARARSQGRTGLVLHAQLSAVAFYEREGFIAYGETFEDAGIGHRSMRLTLEPDTVPAASNVDDHALPTSSRSEIAASRLQLLAETKHRLSIYQPALDTDLYASLDEMAELRRIATSGRGADIRILLHDPEAALRNSHRLVSLAQRLPSVLHIRTPLEEVDLAYASAYLLTDQGGYLFQPDARRADARASLRDRAAQAPLAQHFSEVWERSAPARALQPLDL
>NZ_CP007444.1|WP_038616948.1|1196665_1197859_-|cupin-domain-containing-protein
MTTSHDLPIEVRGSARQPLGMSPAQFLRDYWQKRPLLIRQAFPDFVPPIQPDDLAGLALEETALSRLIIHDENRDRWKVKTGPLTEKDFASTPDRNWTLLVQDVDKWDADVAALLEHFGFLPSWRLDDIMISYAEPGGGVGAHVDQYDVFLLQGIGQRHWAISTDPNAPKDFRPDVELKQLQHFEPTHEWMLEPGDMLYLPPGVPHDGIAFGGPCMTISVGMRAPSRAELTGDLADYIAERLPDELRYGDADLAPAKAAGEIDRAALARVREALPFAAALDDTTLTDWFGRFITRYRNAQLPVPPEKELAEATLRKQLDGGASLLRHPWARMAWARGKRGATLFVNGHAYPTSAEWATKLCGERELVPGKSLPAAEASLLLALVNDGHLVIRKGRGR
>NZ_CP007444.1|WP_081804295.1|1198037_1199867_+|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MYGRPKEVDVNAVVAIENRLPSLEASRLASLERLADGLGPAELYWIASWSAARAERLQRGEATVASAAKAPAEQLTILYGSQTGQAKRVAMQLHARAEAAGLAARLVRADAYPQRDLGKETHLVVVISTQGDAEPPDDARGLVEFVLGKRAPRLAGVRYAVLGLGDSSYPQFCAIGRQIDERFAELGATRFAPLGEADVDVDAVAAPWLDGTLEQARQALGSSQPARVATLQSVPQRVAHSRERPFQAAVLDNQTIVARDAQRDVRHVELSLEGSGLSYEPGDSLGVWPRNPDALVDQWLDAVNLDGGQAVTHDGRSLALRQWLTDERELTRLSRPLIAVLADASGDDDLARLLRPEQSTALAALMASHQPIDLWRRHAAAWSAEELVAALRPLTPRLYSIASSQKVVGDEVHLTVGVVDYLAHGERHWGAASSFLAQAGDEQRLPVYIEPNERFRLPQDDARDIIMIGPGTGVAPFRAFVQERRETAARGRNWLFFGNRHFGSEFLYQVEWQAALREGSLHRLDLAFSRDTAAKVYVQQRLREQGRELYAWLQDGAHLYVCGDANHMAKDVNAALIDIAVAHGGHTHEHAREWLSDLLQQGRYARDVY
>NZ_CP007444.1|WP_038616951.1|1199868_1201563_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSTPLSDLERIKAESRYLRGTIAEGLADPVTGAISDDDNKLLKFHGSYLQDDRDLREERRKQKLEPAYAFMLRARLPSGVVTSAQWLAFDRLATEYANGTLRITTRQTFQWHGIIKRHLKPTMAAIHEALATTIAACGDVVRNVVSTPNPVESEAHALAYAWATRLSLELSPRTRAYHEIWLDGEALVGEPKDEEPLYGATYLPRKFKIGLAIPPLNDIDVFAQDLGLIAIIEQGELKGFNVAVGGGMGATHGDGSTYPRLASVIGFVAPDQLPRVAETIVAVQRDWGDRHERKHARLKYTIDRHGLTAFKAEVESRLGFALQPARAYRFDHNGDRYGWIEGNDGRWHLTLQIESGRLADVGGRRWLTGLRELAKVHQGDFRLTCNQNVIVANVAAADRDRIDAIVAAHGLDGYRSYSGIRRHAVACVALPTCGLAMAESERYLPDILPKLEALLESHGLRDAPILLRLSGCPNGCSRPYLGEIALVGRGPGRYDLRLGADFRGQRLNVSYRENVDEPAILNALAPLFADYADHRRPGEHFGDFLVRAGVIEVDTSRSQVEVAA
>NZ_CP007444.1|WP_051595236.1|1201559_1202282_+|phosphoadenylyl-sulfate-reductase
MKQALLEDAQHDPDALDALNQWLGTLTAEQRVVWALAYAPGTHVLSSSFGAQAAVSLHLLTRQRPDLPVILVDTGYLFPETYQFIDELRGRLGLNLQVYSADESPAWMEAREGRLWEQGVPGIDRYNQLRKVGPMQRALEALHAGSWFAGLRRSQARTRAAIPFAERREGRWKFHPIADWTDRDVGMYLRRHGLPYHPLWDQGYISIGDVHTTHRWEPGSDLDSTRFFGLKRECGLHGLA
>NZ_CP007444.1|WP_051595689.1|1202351_1204112_+|adenylyltransferase
MSQTALAQTDTAFTVDDGLVPPHGGELKELYLSAAEAEQLKQRSAGLPGVDLDTRQLCDLELLLSGAFSPLEGFLTQRDYDRVVEGLRLADGTLWPMPIALDVSEDFAAKLAPGSEVALRDSQGVPLAVLEVQDIYRPDREHEALNVFGTTDRTHPGVAELLERYRPVNLGGRVRGIQSPAHFDFAALRDTPRSLREWFAANGWQRIVAFQTRNPMHRAHRELTLRAAQQVGAKLLVQPSVGRTKPGDVDHYTRVRCYQALLPQYPAHSAKLSLLPLAMRMGGPREALWHAIIRKNYGASHFIVGRDHAGPGKDADGKPFYGPFDAQHLLERYQQELGIEVVPFPAMVYVANRDAYLPSTEVQPEDEVRDISGTQLRRHLHEGSDIPAWFSFPEVVKILRERHPAQATRGFTLFFTGLSGAGKSTIAQAVVAQLLERTSRAITVLDGDEVRKHLSRGLGFSREDRHANVTRIGYVASEIVRHGGIAVCAPIAPYAESRAEARGLVEAHGDFIEIHVATELEVCEARDRKGLYAQARAGTIAQFTGISDPYEVPEQPELRVDGNAGEPAVLAGHIVELLRQRGLLRV
>NZ_CP007444.1|WP_038616953.1|1205153_1206170_-|CysB-family-transcriptional-regulator
MTLTQLRYLVAIADAGLNITLAAERVHATQPGLSKLLRQLEDELGFQLFHRKGRSLHAITHAGTHVLERARVILAEAANIRSIAANLRNESHGTLRIATTHTQARFALPSAVASLSRSYPQVSVHLQPVSDSDVMSLLEGGQVDLAIVSTAAGAPPPSGIALPAYRWNRIVLVPGNHPLARHKHAPSLQQLAAHPIISYDSSLKPESSLARAFHAANLHPQIAMTASDADLIKTYVREGLGIGVLAEMAFQPELDTDLRELDADQLFEPCTTWIVLRRESVLREYALDFISVFAPHLERRAVSRALANGTAGASWTGVPHWRERKVPHKVAELAVEVE
>NZ_CP007444.1|WP_038616955.1|1206495_1207914_+|uroporphyrinogen-III-C-methyltransferase
MKLYPLFADLAGRRVLVVGGGVVGERKASALLEAGAQVVVGAPELSPALMSWVEQTRVQWLRGSFDEHWLDDAWLVVAATDDPGLHQRIRGLADARHIFVNVVDDAEQSSFHVPAVIDRSPVTVAISSGGHAPMLARLLRERLETLLDPVIGSLAGLLGEMRGRIRERLPDIALRRRYYERLLVGPVQSLLRRGQRALAEASAERLLETFDVPRSGSVVLLGAGPGDPGLLTLRGLRALNEADVILHDRLVSHEVLALARRDAERIEVAKQAGHHHTTQTQIHALMLAHAAAGKRVVRLKGGDPFVFGRGGEELEFLRQNGIPYEVVPGITAALACAAYAGVPLTHRDHAQSVRFVTAHCRDSIDTLDWAALAQEKQTLAVYMGTSELPMIQQRLVAHGRSGATPFALVENGSRPEQRVITGVLGNLAERAVAAEVRSPALLIVGEVAALANTLAWFGRPPLGASPAWTEAA
>NZ_CP007444.1|WP_038616957.1|1207989_1208931_+|cysteine-synthase-A
MIYESILDTIGNTPIVRIHRLAPKHVKLYVKVEAFNPAGSVKDRLAYAIIIDAEQKGLLKPGQTVVEATSGNTGVALAAVCAARGYPFVAVMTETFSVERRKLMRAYGAKVILTAAAERGSGMVRKAKELADKHGWFLAQQFENPANPSYHRNTTATEILRDFAGKRLDYFVTGWGTGGTLTGVGEMLKVARPEVKIIASEPAGASLLAGKEWQPHKIQGWTPDFVPGVLNRDVAQQIVPVDDVVARDTSRALAQQEGIFVGISSGATLAAALQVAKDAPEGSVLLAMLPDTGERYLSTFLFEGVNEGSDEVE

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Crispr_ID: NZ_CP007444_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007444_2

1240115-1240220

Orphan

Consensus_repeat	Method
GCGGATGGGCTGCTCGACAACAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007444_2

>merge|NZ_CP007444|2|1240115-1240220|CRISPRCasFinder
GCGGATGGGCTGCTCGACAACAGCGCCAAGGGCACGCTGACCTCCGACGGTGACCTCACCGTCAGCGCGGCCACCCGTCACCGCGGATGGCCTGCTCGACAACAGC

>NZ_CP007444|2|2|1240115-1240220|CRISPRCasFinder
GCGGATGGGCTGCTCGACAACAGC	GCCAAGGGCACGCTGACCTCCGACGGTGACCTCACCGTCAGCGCGGCCACCCGTCACC
GCGGATGGCCTGCTCGACAACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007444.1\|WP_038616994.1\|1251448_1251664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_051595241.1\|1253743_1254226_+\|DUF1398-domain-containing-protein	unknown	unknown	gnl\|CDD\|369242
NZ_CP007444.1\|WP_038616996.1\|1251809_1252454_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_038616985.1\|1229992_1230748_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|235816
NZ_CP007444.1\|WP_038616987.1\|1230877_1231795_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP007444.1\|WP_038616998.1\|1252513_1253014_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_038616983.1\|1225179_1227036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_038623712.1\|1219862_1220705_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225319
NZ_CP007444.1\|WP_038616992.1\|1248196_1248430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_051595240.1\|1248623_1251209_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP007444.1\|WP_038617000.1\|1253095_1253449_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_038616979.1\|1220799_1222758_+\|peptidase-M61	unknown	unknown	gnl\|CDD\|226483
NZ_CP007444.1\|WP_051595690.1\|1227637_1229917_+\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NZ_CP007444.1\|WP_081804296.1\|1233332_1235111_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP007444.1\|WP_038616977.1\|1218865_1219651_+\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|187602
NZ_CP007444.1\|WP_051595242.1\|1254210_1254639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226913
NZ_CP007444.1\|WP_038617003.1\|1255478_1255970_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP007444.1\|WP_038617002.1\|1254729_1255482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227949
NZ_CP007444.1\|WP_038616981.1\|1222868_1225073_+\|peptidyl-dipeptidase-Dcp	unknown	unknown	gnl\|CDD\|182353
NZ_CP007444.1\|WP_038616975.1\|1218252_1218579_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007444.1\|WP_051595241.1\|1253743_1254226_+\|DUF1398-domain-containing-protein	gnl\|CDD\|369242	pfam07166, DUF1398, Protein of unknown function (DUF1398). This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.	2.516e-22
NZ_CP007444.1\|WP_038616985.1\|1229992_1230748_-\|oxidoreductase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	2.7396e-78
NZ_CP007444.1\|WP_038616987.1\|1230877_1231795_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.91635e-90
NZ_CP007444.1\|WP_038623712.1\|1219862_1220705_+\|SAM-dependent-methyltransferase	gnl\|CDD\|225319	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only].	9.66676e-105
NZ_CP007444.1\|WP_038616981.1\|1222868_1225073_+\|peptidyl-dipeptidase-Dcp	gnl\|CDD\|182353	PRK10280, PRK10280, peptidyl-dipeptidase Dcp.	0
NZ_CP007444.1\|WP_038616979.1\|1220799_1222758_+\|peptidase-M61	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	1.64018e-94
NZ_CP007444.1\|WP_051595690.1\|1227637_1229917_+\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_CP007444.1\|WP_081804296.1\|1233332_1235111_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	0
NZ_CP007444.1\|WP_051595242.1\|1254210_1254639_+\|hypothetical-protein	gnl\|CDD\|226913	COG4538, COG4538, Uncharacterized conserved protein [Function unknown].	4.67443e-19
NZ_CP007444.1\|WP_038617003.1\|1255478_1255970_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.57102e-32
NZ_CP007444.1\|WP_038617002.1\|1254729_1255482_-\|hypothetical-protein	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	3.14071e-05
NZ_CP007444.1\|WP_051595240.1\|1248623_1251209_+\|hypothetical-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	1.58948e-36
NZ_CP007444.1\|WP_038616977.1\|1218865_1219651_+\|KR-domain-containing-protein	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.41516e-69

>NZ_CP007444.1|WP_081804296.1|1233332_1235111_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MVWTGRDVFAPCLLWQKQGRVVLQGQKRAPAWRSWLTLAGLCIPVASAVAQVADTATQEILRQQERERALREQQASRPDVRLPVPEKAVEDRIPADETPCFAIQHIRMDGDGASQFQWALKAADAPHDPATGRCLGTQGINVVMKRIQNAIVARGYVTTRVLAKPQDLHGGVLTLTVVPGRIRTIRFAPGVDARATSWRDALPARPGDLLNLRDIEQALENFKRVPTADADIKIAPADGDAQAGESDLVIEWKQSSPMRLALSLDDSGSDATGKLQGGATLSLDNLLTWNDLFYANLGQDVLNGDRKGTRSYTVHYDVPYGYWQLGATASSYAYHQTVAGYQQSYVYSGTSHNADARLSRLLYRNATLKWGAYVRAWERDSNNFVDDTEVLVQRRRQGGWEAGFTYRQFIGAATLDANAAYRRGTGAFNALHAPEEAFGDGTSRTKLITADATLTVPFQLGSQRFRYIGSWRAQWNQTPLVPQDRFAIGGRYTGRGFDGELSLTGDRGWLWRNDLGWSVGAGQELYLGADVGHVSGPPTQWELGQTLAGAVLGLRGGWRGFSWDAFVGAPISKPHGFQSDNPTTGFTLSWSY
>NZ_CP007444.1|WP_038616987.1|1230877_1231795_+|LysR-family-transcriptional-regulator
MDQLDALRVFVRIADSGGFGKASDALGIPRATVTKLVQELEQHLGVKLFQRSTRKVTVTDEGRAYRQRAVELLAGLEEMDAMFSRATEGPRGRLRVDIGSSLANLILLPRLGSFRAAFPDVRLELGVSDRHVDLIGDAVDCVIRGGELTDTSLVARRIASLDYVTCASAGYVKTHGMPAHPEELREQHDLVGYFSSLTGRPFSLLFHRDEERVEVDPRGSRGVLVNESTSHLTALKAGLGVGQTFGFMAKPYLESGELIQLLPDWQRPLHDLNLVFERTRHESARLRAFIEWAADVFAPYDCRPK
>NZ_CP007444.1|WP_038616985.1|1229992_1230748_-|oxidoreductase
MNTRLNGKIALVTGGTSGIGFASAMELANEGAKVYITGRRQAELDAAVKVIGRGVVGIRGDVTKSDDLQALAHTIKTNEGHLDILFANAGGGTMAPLGEITEQHFDDTFNRNVKALVFTVQTMLPLIRAGGSIVLTGSIAGSKGTAAFSIYSASKAAVRSLARSWVLDLKERKIRVNVVSPGSTRTVSLAELGGESKEAQDGLLDYLTSLVPMGRLGEPAEIAKAVAFLASDDSSFINGSELFADGGQAQI
>NZ_CP007444.1|WP_051595690.1|1227637_1229917_+|glycoside-hydrolase-family-92-protein
MAFHPGYVFKRGTAACALALLCFSLPIATARATTPTPIDWVNPYIGTAGTGSEYGGTMPLVTTPFGMTNWTAQTRQNHVSVSPYNYADTHIEGFIGTHQPAIWMGDYGYVTLMPELDDAKYTPQTRRLPFSRKDEAASPAYYAVTMQAGSGRSIRTEFTATDHCGYLRFLFPKASRAGVLIEATRPGIRGYVEVDQAHREVRGYNPDRQDNQLGPLALPNFKGYFVVRFKQPIKAARVYKEAAPLQDHNDVEGDNVGAYVSFDTGSGEPIEAQVGTSFISMAQAQANLDAELPAWDFDARRQSLKDTWNTKLGLFDIDGATTDQRQIFYTALYHSLLYPRLFSEHGRYYSAFDDQVHDGESYIDYSIWDTFRAEHSLLTLLAPERIDGMIQALLQNYREGGWMPKWPNPSYTNIMIGTHADSLVAEAIVKGFRGFDWQLAYDAVRKDAMTPPDGDTTRQWRDREPHTPYEARAGLTYALKLGYLPSDKVAESASSTLEESYDDYAVARVAQATGHEDDYAYFMQRSSNYRLLFNPKRGFMQARRADGSWASPSDGWTEGDEWAYLFAALHDIPGTIELLGGPAAAEAKLDAHFRDGHNHHDNEPSHHYGYLYDFMGVPWKTQARVREIAATAYANTPVGILGNEDCGQMSAWYVFTAMGFYPLNPASGEYMIGSPLFTRLALRLGNGKSFVVTAKNNAADNVYIQSAKLNGKPLDAPVIRYDQIMDGGTLEFVMGPRPSDWAKSWRGQATARATATKAQ
>NZ_CP007444.1|WP_038616983.1|1225179_1227036_-|hypothetical-protein
MKTRLLVAVAAMAFATCALATSPTTLTIQRGNTTVPTTTPLGGAPLTSLEQDPAMSSGDADSGDGGDLGSKPVVNRGIARGRGNSNRMGNALRAKSSPELLGGFDGLNFHDQRYANGGNQFSVEPPDQGLCAGNGFVMESVNDVLAIYSSAGNKLVGPVDLNTFYNYPAAINRSTGAYGPSITDPSCYYDQDTKRWFQVVLTLDRIGTTSALSGTNHLDIAVSQTADPTGAWTIYHLPVQNNGTQGTPDHGCQGGFCLGDYPHIGADANAIFLTTNEFALFGDGFNGAQIYAISKQGLVNGAASINVVLFNGGDPSIPAPAFTVWPAISSGGQHAAAHGGTEYLLSSDAVFYDSGTSNTIWLWSVSNTSAIDTTPAAVALNVSSIAVQEYSVPSSLAHQKPGSTPLRDCFALTGCAPTYLGYPNIVYPAPRDLAVNDSRMQQVSYANGKVWGTLDTDVLLGDGSHGSGINYFVINPNSSVLFANGTLSLPDANLTYGAAAVTQSGRGVIAFTVVGPNDHPSAGYASLDAKIGAGDVHIAAAGAGPWDGFTGIPYLGGDRPRWGDYGAAAADGNTIWLASEYIAQTCTLAQYLTPPLFQCGGTRGALGNWATRISAIGL
>NZ_CP007444.1|WP_038616981.1|1222868_1225073_+|peptidyl-dipeptidase-Dcp
MLRLRTLVVATTMALAACSQQSSEQAQPAPAPASTAPAKASTAAPKAEVSAVNPFLEPSTLPFQAPPFDKIKDGDYQPALEEGMKQHLEEITKIADNPEPPTFENTFIPFEKSGQLLSRVRRAFFAVTGANTNDTLQKVQQDEAPKFAEHQDAIVLNDKLFKRIQTIYDQRDSLKLDPESKRLVEVTYKNFVRGGAKLSDADKAKLKDLNKEESGLRTQFTRKLLAATKAGALVVDDKSKLDGLSDGDIAAASQAAANRKLDGKWVIPLQNTTQQPALQNLNDRATREQLFKASWDRAEKGDANDTRELISRIAQIRAEQAKLLGFSSYAAWKLEDQMAKTPEAALTFMDKLAPAATARAEREAKDIQDVIDQQKGGFKVEAWDWNHYSEQVRKAKYDLDESQIKPYFELDNVLQNGVFYAANQLYGLTFKERKDIPVWQPDVRVFEVFDKDGSSLALFYCDYFKRDNKNGGAWMSNLVGQSKLMGTKPVVFNVANFTKPAAGQPALLSFDDVITMFHEFGHGLHGIFANSQYPSLSGSATARDFVEFPSQFNEHWATDPKIFANYAKNYKTGEPMPAELVEKIKKSKTFNKGYDMTELLSAALLDMSWHSLGPDAPKQDPDKFEADALAKAKINLSYVPPRYRSSYFQHIWGNGYAAGYYAYLWTEMLADDAFQGFVDKGGMTRANGDRFREMVLSRGNTEDLAKMYKDWRGKDPSIEPMLLNRGLKEAPQKK
>NZ_CP007444.1|WP_038616979.1|1220799_1222758_+|peptidase-M61
MSHVPFAGSPLAKPRRFSRLALAVAMVFATGAAGAQDNRMGDVPPPQDTPYAGTVSIHIDANDTTQGIFRVRESIPVKAGPLTLLYPQWIPGDHSPTGPIAMLAGVKLSANGKPLMWKRDKYNVYAFHLDVPEGVSSIDAEFQYLSGRTDDAGFEITQRMTDVEWSSMLLYPAGHYSRQITFAPSMTVPHDWQIATALETASRSGDTVTFKPVTLNNLVDSPVYAGQYFKRVDLTSFDKVPVYLDVFADAPKYLEMTPEQVSVHRNLVTQALKLFGSHHYDHYDFLFSLSDEMSGHGTEHHQSSEDGLDADYFTAWKEAAPGRDLLAHEYTHSWNGKFRRGEDLWTPNFNVPMGDSLLWVYEGQTQYWGFVLTARAGMWSPQEFRDALAMTAANYERNRVGFEWRTLEDTTNDATIARRAGLPFRSWQMSEEYYSGGQMMWLEVDGKLRELTHDKKSLDDFAKAFFGVDNGSYVTKTYTFDDVVAALDGVAKYDWASFLRNRVNVVNPPLQNGLEATGWKLVYTDQESGYEKQYNSRSEPARHLYNFAWSIGLTMNDKGQVNDVRWNGPAFKAGVSTGATLVAVNGENYSTDVLKAAITAAKGTKTPIQLLLKYQGGYRTVAVDYHDGLQYPHLVRISGKPDYLSEIIAPRK
>NZ_CP007444.1|WP_038623712.1|1219862_1220705_+|SAM-dependent-methyltransferase
MSHYAGPLLTRPAAEALLTAWAGGLDAWTGSLDLGRSIDSATLQAETWSWKGRAYPYPGKLKDRTIYYWDGDEFAAVSRFSGSLIKLVPTEWGAPTFEIDGIKMLPTSKESPVDDARRKVALVEPRGKSVLDTCGGLGYFAACCLEAGVARIQSFEKNPDVLWLRTLNPWSPDPEAPASGGRLHLTHADVSQAITQIADASVDALLHDPPRFGIAGELYSQAFYDQLARVLRRGGRMFHYTGSPNKLTSDRDVPREVAKRLEKAGFKAQLALDGVLATRR
>NZ_CP007444.1|WP_038616977.1|1218865_1219651_+|KR-domain-containing-protein
MDLGLAGRIAVVTGASKGIGLACAKAFAREGAKVVGVSRDIAHLHAAQHELQHEGLHLDIAAADLQDSVAAQMVVEYIENAFGPIDVLVNCAGAAKRTPIAELHADAMQAAMQAKYFTYMHVIDPVIRHMASRGRGSIVNVVGQGGKQASPIHIGGGAANAALMLASVGYANAYADRGVRVNVINPGMTNTGRVQEGLNAASRASGRPAEELLAEQQAEIPMGRMAEPEEIADVAVFLASSRASYVTGAVIPMDGGKSSVI
>NZ_CP007444.1|WP_038616975.1|1218252_1218579_-|hypothetical-protein
MKANNLLALTAAALFTTVGLAAINSNVRSLPVSEINGVKVIDLAPIDVRPTAEDLRAAALYIDAGVAAALTAAPLLRPEAVASRGVLGAQLAMPYYSFGNQFGRISKE
>NZ_CP007444.1|WP_038616992.1|1248196_1248430_+|hypothetical-protein
MKFEKQDNWIDTPGYDQKVIAWSAMDDGDRVLKSVVDGQSWILRLNDFPDEPLFTLLVDEKEIIHFTQWPKNWVRPR
>NZ_CP007444.1|WP_051595240.1|1248623_1251209_+|hypothetical-protein
MGSLGGSVTMTAGNNVHLTDANVLSDTGTAIVGKNVTIDAAVGSTDTSQTYKQSSSGLTLSLGGAAVDAAMGAYAAAHRGSEVKDDRLKALYAAQAAYGVSDAVDAYNKGGVSKSGTDGGINLQLGIGASSASSKSVSHDETAYGSTIKSNGNVLIAATDGDLNVIGSKISGDNVALSATNNINLLSQSEDHTLKSSNKNASGGVGVQIGTDGIGFYAQASVGKGSAHGNGTTHATTSVDAKDTLTLVSGGDTTLQGAQAKGNTVLANIGGNLNIISEQDTDDYASKQQQASGKLVVGVGASGSGSYNQSKVDSHYASVTTVSGIGAGDGGFNIHVNGNTDLKGGVIASTADPSKNLLDTGSLTFSNIENKANYSASSVGVSGGSAGSGMSVSPSVGIPQSDDSHSSIKAGIAGGTIITRNGDTDLSGLDRTANLNQAGLKPIFDLQKVQEQQEMGQVAGYVGFRAAGDIAGKMGWAEGSPERTILHGVVGAAVAALGGGDALSGGAGAAANQAAIPAMAQYLADHGYTPGSAEFATMLQLGSAAIGGAVAGGTGAATALDGTKYNYLTHQQLDKLNTAIQECKGDRVCIESAKSAAETISANQELALVSSCGGPGGSRSDACKAPIADAFDYASDPLASKLGLQADQAVSAQDYMKYRYWWGNVIGDRGASEVGNFMVGVAAAGATAGLGAGPGMLAAAGYEGIEGGSLLQFALATRTGTALTSGGVNLSVQLAKTGGDMTKVNPIDVGASVIGGYLGYGGGVRWNGLVGFGVGVAQTEANNLYGGQNNSLLLGGVLGSATTAIGFRIGDGVTDSLRTPVISPISAVLWGNVIGPSSTEGMNWGFEKLKELQDNQKQATK
>NZ_CP007444.1|WP_038616994.1|1251448_1251664_+|hypothetical-protein
MMIIGRTVNAVIPGMIFFACVTLVIIVFSYVLAQLKGLKYVFHDALAVGVQNGLALGVAIAILTFIIPPRR
>NZ_CP007444.1|WP_038616996.1|1251809_1252454_+|hypothetical-protein
MPNIYLIWNGAMLAFCALAALAWKGSPNSKWIAFVTLAVLTFGSAYTPIKIFPIFIPTFWLAFAVPLIGLVVASVRLSGWRRWSIFFPSLLLLGGVLLVTAAVVASSAFNPSDGVVNVGIYIKAKSAVRARLDVPDSAKFRMLRISTHHGQRFVCGEVSSKNLKGGGLAGYTRFYLPTDAVAPLPTFEKDDEASRFEVTQACTDDYLREKIRIK
>NZ_CP007444.1|WP_038616998.1|1252513_1253014_+|hypothetical-protein
MGLVVKKLIDDRPSGIYSDQDGFFRSEYQIGARLVWVRCQHRRDCIECVARVDELLPEIFAAMPSAVALAESHSRTIVPEFWTKHDTSLREGSRMDVWGITITPGLEMAWFDISRNHDFDYVSPTFSKDDCWNDEPFLLPAFPDRHHVYVVRFRDGSLSAEPDLKG
>NZ_CP007444.1|WP_038617000.1|1253095_1253449_-|hypothetical-protein
MGRKAIKRGRVIEVSAGVLIWAIRIHTLKPMPNCWREVCSVKKWGRVLFRSPETQADHKKKHSDPFIRTLLFVGIPGIWFAYGKGVANGQYAYAAFILLLFLLILMRLVGHARRLRE
>NZ_CP007444.1|WP_051595241.1|1253743_1254226_+|DUF1398-domain-containing-protein
MFTLQQIDNLHARLGKAKTLAQYVRALHAIGVEHYDSYLTDGHSEYFGKDGYKIVCPPVHDLLVIAEVSQRDSFLRHLRRHELGETGYMDMSRGLAESGIEKWSVDAVGMTMTFYDRAGNAMLVTGSSDWVRYRNLFLREAQAMALLLVLHVWEKTCSRV
>NZ_CP007444.1|WP_051595242.1|1254210_1254639_+|hypothetical-protein
MFARMKTPLVCMLAMLYPLSAMACDNKVDDPVSVVQAQVDAYNAHDVAKFASCYADDVSIIDLSGKRPDILGAAALKQAYSFLETKPKEFRVEIVQRVVNGPVVVDQEQLFGLPPDKGQPKALAIYEVRDGKIQKAWFPPRD
>NZ_CP007444.1|WP_038617002.1|1254729_1255482_-|hypothetical-protein
MKPIDDETLQAYVDGELDAATAADIDAALAHDTALAERVQRTRALRAQLRATFDPVLNEPVPEHLSALLRPTAARDAGASRITPTRTDMPLNARRPAARRRWITGAALAASIMLAAASMWWWRTGEALTRTQHGQTYAAGALAHTLDQALASEPDARAPIAIGLSFRGADGHVCRTFVVRTSPSRAGLACHGDSGWALPVLGPMTPSEGGELRQAASALTPEVQAAVDARLRGDVFDAAQERAARSAGWQ
>NZ_CP007444.1|WP_038617003.1|1255478_1255970_-|RNA-polymerase-sigma-factor
MNSSDTMREGLIALLPRLRRLARALAGQAADADDLVQVVLERALARAEQWRPDAPLDKWVFAIARNAWRDELRARHRSQALFAPEEAGEAVADTNSAPSVQKLVLAKALAALPPDHREVVALVLVEGMSYSEAADLLEVPVGTVTSRLARARTALQAHLGTEA

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Crispr_ID: NZ_CP007444_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007444_3

4098736-4098822

Orphan

Consensus_repeat	Method
AAGGCTGTCGCGCACAAGGTGCGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007444_3

>merge|NZ_CP007444|3|4098736-4098822|CRISPRCasFinder
AAGGCTGTCGCGCACAAGGTGCGCTCCCACAGAAAAGCAGCGGCGTGAAGCCTGGCGCGAAAGGCTGTCGCGCACAGGGTGCGCTCC

>NZ_CP007444|3|3|4098736-4098822|CRISPRCasFinder
AAGGCTGTCGCGCACAAGGTGCGCTCC	CACAGAAAAGCAGCGGCGTGAAGCCTGGCGCGA
AAGGCTGTCGCGCACAGGGTGCGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007444.1\|WP_038622175.1\|4104999_4105413_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP007444.1\|WP_038622170.1\|4103113_4103605_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|376817
NZ_CP007444.1\|WP_038622167.1\|4102066_4103095_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP007444.1\|WP_038622144.1\|4091788_4092895_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP007444.1\|WP_008211962.1\|4104168_4104336_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP007444.1\|WP_038622178.1\|4105402_4106515_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
NZ_CP007444.1\|WP_038624878.1\|4088611_4090054_-\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
NZ_CP007444.1\|WP_038622181.1\|4106640_4107834_-\|aminotransferase	unknown	unknown	gnl\|CDD\|224316
NZ_CP007444.1\|WP_051595577.1\|4092930_4093437_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP007444.1\|WP_038622150.1\|4094309_4095014_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181335
NZ_CP007444.1\|WP_038622159.1\|4096737_4097421_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP007444.1\|WP_026033649.1\|4103921_4104158_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP007444.1\|WP_038622156.1\|4096211_4096469_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007444.1\|WP_038622164.1\|4098913_4101940_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_CP007444.1\|WP_038622153.1\|4095173_4096193_+\|glucokinase	unknown	unknown	gnl\|CDD\|367143
NZ_CP007444.1\|WP_038622161.1\|4097548_4097878_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236754
NZ_CP007444.1\|WP_038622183.1\|4108012_4108768_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP007444.1\|WP_038622141.1\|4090193_4091792_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP007444.1\|WP_038622172.1\|4104467_4105010_+\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP007444.1\|WP_038622147.1\|4093608_4094193_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP007444.1\|WP_038622175.1\|4104999_4105413_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.5633e-42
NZ_CP007444.1\|WP_038622170.1\|4103113_4103605_-\|protein-export-chaperone-SecB	gnl\|CDD\|376817	pfam02556, SecB, Preprotein translocase subunit SecB. This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.	3.54991e-68
NZ_CP007444.1\|WP_038622144.1\|4091788_4092895_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.47259e-106
NZ_CP007444.1\|WP_038622167.1\|4102066_4103095_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	2.34533e-167
NZ_CP007444.1\|WP_008211962.1\|4104168_4104336_+\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	2.69616e-20
NZ_CP007444.1\|WP_038622178.1\|4105402_4106515_-\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	5.57775e-22
NZ_CP007444.1\|WP_038622164.1\|4098913_4101940_-\|ATP-dependent-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	3.24104e-111
NZ_CP007444.1\|WP_038622181.1\|4106640_4107834_-\|aminotransferase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	5.86168e-79
NZ_CP007444.1\|WP_051595577.1\|4092930_4093437_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.11269e-33
NZ_CP007444.1\|WP_038622159.1\|4096737_4097421_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	4.68999e-43
NZ_CP007444.1\|WP_026033649.1\|4103921_4104158_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	3.51824e-37
NZ_CP007444.1\|WP_038622150.1\|4094309_4095014_+\|short-chain-dehydrogenase	gnl\|CDD\|181335	PRK08264, PRK08264, SDR family oxidoreductase.	2.11553e-103
NZ_CP007444.1\|WP_038624878.1\|4088611_4090054_-\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.45014e-77
NZ_CP007444.1\|WP_038622153.1\|4095173_4096193_+\|glucokinase	gnl\|CDD\|367143	pfam02685, Glucokinase, Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP.	8.57716e-122
NZ_CP007444.1\|WP_038622161.1\|4097548_4097878_+\|hypothetical-protein	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0.00137857
NZ_CP007444.1\|WP_038622183.1\|4108012_4108768_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.59441e-74
NZ_CP007444.1\|WP_038622141.1\|4090193_4091792_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.12573e-112
NZ_CP007444.1\|WP_038622172.1\|4104467_4105010_+\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	1.21525e-23
NZ_CP007444.1\|WP_038622147.1\|4093608_4094193_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.92698e-10

>NZ_CP007444.1|WP_038622161.1|4097548_4097878_+|hypothetical-protein
MRRYLAMLPLALLAACSPASPPPDQKPPKPQAAESSSTPDNATLGSAEWYAWVDERLHVTDDGHGPDRGSAEWNRAVQHKLGQEAPQSPIGSPQWQQAVDALLRTRPAM
>NZ_CP007444.1|WP_038622159.1|4096737_4097421_+|HAD-family-hydrolase
MPRSDTAFLFDLDGTLVDSVYQHVLAWKEALDREGVELSVWRIHRKIGMSGGLFTNILLRETGLEITEERLTRLRTWHAEAYNRQATQGSVRPLPGARELLAFLTEEEIPWAIATSGRMQTAAHNLEALGVDPSKVPVVTRDQVRYAKPDPDLFITAAQRLGVDIHYSLVVGDSIWDMLAAQRARALGIGLLSGGYGQEELEDAGAFRVYEDPADLLKHIDEVAARR
>NZ_CP007444.1|WP_038622156.1|4096211_4096469_-|hypothetical-protein
MLAACIGIANAQGAMGRLSFEGRVVQPTCGDSQPVPARGPCGPDSMRGIDESVMPPNQAADSALRDYFIERGDGDAKWVLTRQYR
>NZ_CP007444.1|WP_038622153.1|4095173_4096193_+|glucokinase
MRTPTRAAATLLADLGGTNVRFALADPGRSNPLMDDSVRRYRVKDHASLAEAIRQYFEDTGHTASRAVIAAAGRVSEGETVKVTNNPWQVAAHSLQAELGMEAVHLVNDFAAQAMAVPLLTHDQLSAVGPQALPHLGQREQQTFVVMGPGTGLGVAGLMRREGHWIVLETEGGHAGFAAHTAEDVEILHRLNDRFGRVSNERMICGNGLVNLYLALADMAGQPAEEYTPEDITARAEAGSDPLCVRTVETLAGIFGSVAGDLVLSLGGWDGVYLTGGVLPILLPWIKRGGFRERFESKGRFRETMEQVPTVAMMHPEPGLLGAAALAVLDAGKPLVPGA
>NZ_CP007444.1|WP_038622150.1|4094309_4095014_+|short-chain-dehydrogenase
MNIQNSVALVTGANRGLGLAYAKALLAAGARKVYAGARDPSTVTLPGVIPVKLDVTDPQDVAAAAALCSDVNLVINNAGITGGALLLDAADGETTLRRLLETNLHGIHAMAVAFAPVLKANGGGALVNMLSALSWLSLESTSAYSVSKAAAWALTNSLRNELRAQGTQVLAVHAGYIDTDMVSHVDAPKSSPADIAARTLEALAKGELEVLADETSRQVKAGFGATPAVYLGAA
>NZ_CP007444.1|WP_038622147.1|4093608_4094193_-|TetR/AcrR-family-transcriptional-regulator
MRYSKGHKEATRQRIIDTAAARFRGEGIAAVGVANLMGDIGLTQGGFYNHFESKDDLAREAVSQAWNNTYERLEKVLHDPERGGVEAVINSYLSARHRDAMAEGCVAAALSPEIARGADVVREEFTRGVEHMVSLLADALPKTLKPKQRRATAMALFSMLVGTLAMARAVVDADVSDDILAAGRKAALALIAAS
>NZ_CP007444.1|WP_051595577.1|4092930_4093437_-|transcriptional-regulator
MNRKSLESMQCPVARSLGRVGDGWSMLILRDAFYGIRRFDDFVQSLGIAPNILSHRLTKLLAAGLLERRAYSTRPTRYEYVLTDQGRDFRPVLLALMAWGNRHFAPEGPSIVLTDTLTGEPVELAQVDLRTGEPITRGRHIITAGAVANERTRANVEFRNAHLAADRH
>NZ_CP007444.1|WP_038622144.1|4091788_4092895_-|HlyD-family-secretion-protein
MSSIVVERADTPAIPIAEPRNKRKRIARALAGIAVVAAVIYGVHWWSVGRFIEDTDDAYVGGDITVVGPKVSGYIAQLAVTDNQVVHAGDLLVKIDDRDYRAAVAKAEGAVAAQQALLTNLDANERLQQEVIHQAQAGVLAADAETLRSQQDEARYRDLSSRSAVSIESAQRADATFKTAKAASTRAQAALMAAQRQIDVIESQKLQARAALEQAKAELDIARLNEGYTELRAPFDGVIGNRRARVGAYAAAGSQLLSVVPAHGLWVDANFKEDQLARMQSGQAVNVRADVMPGRVFHGHLASLAPATGAQFSVLPPENATGNFTKIVQRVPVRVILDGHDDTLGVLRPGLSVVAEVDTRNAGETRTP
>NZ_CP007444.1|WP_038622141.1|4090193_4091792_-|MFS-transporter
MNATASAMRFAVPVDPATLGMTQKIFAFASMCVGMFIALLDIQIVSASLRDIGGGLSAGADETAWVQTSYLIAEIVVIPLSGWLSKVFSTRWLFAASALGFTIASLLCGAAWDIQSMIVFRALQGFLGGSMIPMVFTTAFVFFQNKQRVIAAATIGAIASLAPTLGPTLGGWITDHASWHWLFFVNLVPGLFVAIAVPLLVNIDSHDFSLLRRADYLGMVLLAIFLGCLEYTLEEGPRWNWFSDQTILTTAWLSGLASVGFVFRSLTYDQPVVDLRALGDRNFALGCLFSFVTGIGLFATIYLTPLFLGRVRGYSALEIGEAIFSTGVFQILTIPLYSFLAQRFDLRWIMMAGLALFAVSMWDFAPITHDWGGHELLLPQALRGMAQQLAVPPTVILTLGGLPPARLKLASGLFNLMRNLGGAIGIAVCATVLNDRTNLHFYRLAEHLNADNEAMNQWLAQAGGHLAELGSNASEAGNSALHQLWQLTYREAQTLSYADAFLVIMVCFVVATALVPLMRKVAPPAGPSADSH
>NZ_CP007444.1|WP_038624878.1|4088611_4090054_-|RND-transporter
MVAALAGLAGCMVGPDYVRPEVKTNPGYASQSMLEAREASRPAPALDAWWTGFDDPELSTIIGRVMTQNLDLAAAIARVDQARAAAREAGAQLMPQGSLDAQVARQYQSTQSPLGELASHTPDYKRTQTLENIGVGASWELDLAGGLRRGAEAAQAEAEAAEANQDGVRVMVAAEAADSYFQARGAQERLRLAQQQIDTEAQLVELVKVRLAGGLATSRELAQAQALLLQARATLPPLRITLAQQLNRLDVLMGAAPGTYAAELQAPGATYTVPAVGTDGGPQMLLSRRPDVIAAERKLAASNARIGVATAEYYPKLSLGALLGFETLHSGSLFSSAAFQPQAMLGLHWRLFDFGRVDAEVAQAKGANAEALAQYRQSMLRATEDVENAIVSLAELESQHRELVDEVAAHQQARDAAQDAYKGGAVSLLEVLDEDRQLLSSRDQLARVHADDARAAVAMFRALGGGWAGSVAGPQAVAQR
>NZ_CP007444.1|WP_038622164.1|4098913_4101940_-|ATP-dependent-helicase
MQSPDDKRHDRQTQQRGESGDATLPGVWRKLLSSSGPATTPERGVLGFFLEVVPEEGAAYAHVDVAPVLLAVAEQGRFARPAPLDSKHLGQQPLEPHEQRLAATVLGLPQSLRKSRSYARLAGHVGDALLAEILDTAPCFLGGLAGLRLSRGKGHQLNWQWHLENDGSQRLLPCLPTNHRVLRIDALWYLDAERAEMGHLEAPLEETQWLDLPPLKHEYSQILRNALPQSRLSHRLPLPQVLGEMRRAELAPKPVLTLHALTRHARLAAGTPPLAYARLAFDYAGERLPGRGGEPLVRRVRNGHLVEITRRRAEELSAMEQLERAGLTPGVDTEGLPWDLADTLPDDAWLFPGKGYAGALEVNTPARWLALRPKLEAEGFLLDYAPSFPFEVLEGPVRWYGNAVEDADDHAFDLEIGIEVEGKRHNLLPAVAQALADHQLNLSPVPNEPEDAVWYAPVDERRRVPVRLKELRGLLAPLAEYLERPRNKLHLPRVQAGRLEELVEALPTGGELVASEVLRGFTARLRDAAERASDAVPEGLTVELRPYQREGLRWLNALAEAGVGGVLADDMGLGKTLQLITHLLALKERGALTEPALIVVPTSLIPNWQAEIARFAPSLRVLALHGPQRGGDFSQLGAQDIVLTSYALLPRDVVTLRKQPFALIVLDEAQQVKNPRTQARRAVLSLRAPRCVCLTGTPLENHLGELWSQVDLAVPGLLGDEGAFRRHYRIPIERHRDTDCQDRLNRRLAPFILRRTKSQVANELPPKTEITRRVVLEGRQRELYESLRLSLADELREVIAQRGIAHSGIVVLDALLKLRQVCCDPRLVKLEAARGVRDSAKFELLMDMLPALLAEGRKVLLFSQFTEMLKLISHELDRRRIRYVTLTGETRDRAEPVRQFQEGEVPLFLLSLKAGGVGLNLTAADTVIHYDPWWNPAAEAQASDRAHRIGQDKPVFVFRLITGGTVEERIEELKARKAELAEAVLEGGGTRERLSFDQADLDALLAPG
>NZ_CP007444.1|WP_038622167.1|4102066_4103095_-|glycerol-3-phosphate-dehydrogenase
MVERPTLAVLGAGSWGTALAALAARNQVPTRLWGRDASALAAMAQTHHNLRYLPDVELPAELIYEPDLAAALRGAEVVLIVVPSHAFASMLEEIAPYLEPNARIAWATKGFEPGTGRFLHELVDERFPGRAAAVVTGPSFAKEVAAGMPSAVTVHSDDDAFAHEMALLLHAPNFRAYSGSDVLGAELGGAMKNVLAVATGVADGMGLGLNARAGLITRGMNEMLRLGVALGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGQGKAIDEAVREIGQVVESVLTADEVMRLATKHGLDLPISSGVRAVLHGEVTPSEGLKMLMSREQKPEYPKGLFTPAA
>NZ_CP007444.1|WP_038622170.1|4103113_4103605_-|protein-export-chaperone-SecB
MADVASNGQANAPQLVLQKIYVKDVSYEAPNAPQIFQEVGETEQQPQVQLNLGQKSVDLGNDLYEVVLSLTLTCTLGERTAYLAEVHQAGVFGIAGFGEEDLAGVLNSYCPNLLFPYARQMLSSLVLEGGFPPFLLQPINFDALYAEQQRRILSGSAAPTLNS
>NZ_CP007444.1|WP_026033649.1|4103921_4104158_+|50S-ribosomal-protein-L28
MARICQVTGKGVRTGNNVSHANNKTRRRWLPNLHERRFWVPSENRWVKLRVSNHALRTIDKNGIEAVLADLRARGEKI
>NZ_CP007444.1|WP_008211962.1|4104168_4104336_+|50S-ribosomal-protein-L33
MANSKQDKIRLISSAGTGHFYTTQKNKKNTPEKFEFKKYDPVVRKHVIYKEGKIK
>NZ_CP007444.1|WP_038622172.1|4104467_4105010_+|DUF4166-domain-containing-protein
MPLALFPSLLDAMDWSQLAPAVQRMHGEGKVLEASGTAHVDGDAHLLARLLRRLLSLPEPGAAQAIALTIERNGQRETWTRRFARGQMRSTLQPGGGTLLRERLGPVSLHFSLHRDDHAIDWQLRRVTVLGLPLPRTLCGTVLSRSGTHEGRYAFDINARLPGIGRLIAYRGWLEIDRVL
>NZ_CP007444.1|WP_038622175.1|4104999_4105413_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MSSDIEHPVIVFDGVCVLCSRWVDFILRHDREGRFRLAAMQGTRGRALLMAHGLSPDEPSSFLLVQDGVGYRNTDAIARVLRQLGGRWRLASATMRIVPAALRDPLYRWVARHRYRLFGKRDHCRLPASDEAWRFID
>NZ_CP007444.1|WP_038622178.1|4105402_4106515_-|saccharopine-dehydrogenase
MSLRVVVIGATGVFGSRIARRLAHDARFELILAARRAESLEALYGSIDDARLQVATLDASHSNFRHALAALRPQLVIHTAGPFQGQDYRVAEACMACSSHYIDLADGRGFVTGFEQLDARARRAGCLLVSGASSVPALSAAVVDALLPHFATLEAIEHAINPGNRTPRGDATVASILGYCGRPIRVWRDGGWDEAHGWMDSRRQVFPFGARRVGVCDIPDLDLFPARYPQVRTVLFRAGLELPLLQWATWSMAVLVRMGVVRDLARHAPALRRLSERFVAFGSDVGGMAVELRGQGRAGAPLHLRWWLDADAGDGPQVPVTPAVVLARHMADGLIDAKGAMPCMGLLTLEQIVQGFDGFALRTGLETVSR
>NZ_CP007444.1|WP_038622181.1|4106640_4107834_-|aminotransferase
MLDAVLNFLSNGLTHAGWLSMTIYMLIMTQLTIFTVTLYLHRCQTHRGVDLHWSISHFFRFWGWLTTGMVTKEWVAVHRKHHAKVETEEDPHSPQIYGIKKVFWDGVSLYRDASEVKDDLEKYGRGTPDDWIERKLYAGHPYWGPTLMLIINLALFGVIGAALWALQMIWIPFWAAGFVNGIGHWWGYRNFESADTATNLIPWGFWIGGEELHNNHHAFPSSAKFALRKWEFDIGWAAICALRAVGLAKVLRVAPTLDVRPNVHLPDAETLKGVLTHRFAAMTDYYRNVIMPTLRDEAQHAGDNIKSVPRRMRRALADGGRWLDSEGRDRMQAVLAKRPTLSTVCDFRARLAALMEQRGADQALKGLQQWIAEAEQSGIRALQEFAGRLKSYSVANA
>NZ_CP007444.1|WP_038622183.1|4108012_4108768_+|ABC-transporter-ATP-binding-protein
MTAPTPILELDHITRHRAGRPAVSGLTLRLDSGQVLGLLGVNGAGKSTTLAMIAGALVPDSGGIKLNGKDFLEQPELARRVIGWLPERAPLWPELTVGEHLDAHGRLRGLRGSELAQAHRQIVERLELGTLSRRLAGVLSQGQRQRLGLACALLHNPQLLVLDEPANALDPVQVAALREVIREQAAAGTAIILSTHLLTEVTAACDRVAILHEGQLRYDGALDGADHKALEQTFFDIAMRGNGSNDRMQAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007444_3	3.1\|4098763\|33\|NZ_CP007444\|CRISPRCasFinder	4098763-4098795	33	MF580956	Salinibacter virus M8CC-19, complete genome	44263-44295	8	0.758
NZ_CP007444_3	3.1\|4098763\|33\|NZ_CP007444\|CRISPRCasFinder	4098763-4098795	33	MF580960	Salinibacter virus M31CC-1, partial genome	44260-44292	8	0.758

1. spacer 3.1|4098763|33|NZ_CP007444|CRISPRCasFinder matches to MF580956 (Salinibacter virus M8CC-19, complete genome) position: , mismatch: 8, identity: 0.758

cacagaaaagcagcggcgtgaagcctggcgcga	CRISPR spacer
cacagaaaagcagcgccgcgaagcccaccttgc	Protospacer
*************** **.******.. * .*

2. spacer 3.1|4098763|33|NZ_CP007444|CRISPRCasFinder matches to MF580960 (Salinibacter virus M31CC-1, partial genome) position: , mismatch: 8, identity: 0.758

cacagaaaagcagcggcgtgaagcctggcgcga	CRISPR spacer
cacagaaaagcagcgccgcgaagcccaccttgc	Protospacer
*************** **.******.. * .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

214572 : 224298

Escherichia_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038615194.1\|214572_215916_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.4e-33	27.3
WP_038615197.1\|215964_217377_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-50	30.4
WP_038615199.1\|217383_218319_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.9e-19	31.7
WP_038615201.1\|218315_218873_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.8e-49	52.8
WP_038615203.1\|218869_219757_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.8e-97	57.8
WP_038615205.1\|219753_220803_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.1e-83	48.3
WP_081804538.1\|220969_222142_+	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	3.1e-27	27.7
WP_081804539.1\|222116_222986_+	hypothetical protein	NA	NA	NA	NA
WP_081804241.1\|222873_224298_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.1e-13	29.3

DBSCAN-SWA_2

1348108 : 1353908

Erythrobacter_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051595253.1\|1348108_1348582_-	J domain-containing protein	A0A1P8VV96	Erythrobacter_phage	3.1e-18	36.5
WP_051595254.1\|1348685_1349126_-	hypothetical protein	I6NP82	Burkholderia_phage	1.5e-06	36.2
WP_038617101.1\|1349122_1349311_-	hypothetical protein	NA	NA	NA	NA
WP_051595255.1\|1349307_1349928_-	hypothetical protein	A0A0U2BXF3	Paracoccus_phage	5.3e-42	46.5
WP_051595256.1\|1349927_1350785_-	hypothetical protein	A6M982	Geobacillus_virus	1.7e-14	31.1
WP_038617103.1\|1350792_1351734_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	9.2e-22	53.1
WP_038617104.1\|1352026_1352275_-	hypothetical protein	A0A292GD24	Xanthomonas_phage	6.6e-28	64.6
WP_038617105.1\|1352271_1352469_-	hypothetical protein	NA	NA	NA	NA
WP_038617106.1\|1352465_1352675_-	hypothetical protein	NA	NA	NA	NA
WP_038617107.1\|1352671_1353028_-	hypothetical protein	NA	NA	NA	NA
WP_081804305.1\|1353158_1353908_-	hypothetical protein	A0A1I9KG86	Aeromonas_phage	9.9e-35	35.5

DBSCAN-SWA_3

1359257 : 1385067

Burkholderia_phage(44.44%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038617118.1\|1359257_1360136_+	site-specific DNA-methyltransferase	A0A0F7L417	uncultured_marine_virus	7.3e-106	60.5
WP_038617119.1\|1360132_1360330_+	hypothetical protein	NA	NA	NA	NA
WP_038617121.1\|1360326_1361040_+	hypothetical protein	A0A291L9W7	Bordetella_phage	4.5e-61	52.2
WP_038617124.1\|1361036_1361483_+	hypothetical protein	NA	NA	NA	NA
WP_038617127.1\|1361483_1361756_+	HNH endonuclease	NA	NA	NA	NA
WP_038617130.1\|1361958_1362261_+	hypothetical protein	NA	NA	NA	NA
WP_038617134.1\|1362362_1362584_+	hypothetical protein	NA	NA	NA	NA
WP_038617137.1\|1362585_1363257_+	hypothetical protein	C8CLH7	Xylella_phage	9.8e-26	32.8
WP_038617143.1\|1363457_1363898_+	lysozyme	A0A0S2SYD0	Pseudomonas_phage	2.9e-34	58.6
WP_038617147.1\|1363912_1364236_+	hypothetical protein	NA	NA	NA	NA
WP_038617150.1\|1364232_1364499_+	hypothetical protein	NA	NA	NA	NA
WP_038617154.1\|1364495_1364906_+	hypothetical protein	NA	NA	NA	NA
WP_051595261.1\|1364908_1365199_+	hypothetical protein	NA	NA	NA	NA
WP_038617158.1\|1365195_1365705_+	hypothetical protein	I3VYU8	Thermoanaerobacterium_phage	1.0e-46	52.7
WP_038617164.1\|1366009_1367557_+	hypothetical protein	H9C0C7	Vibrio_phage	2.3e-110	46.3
WP_081804306.1\|1367553_1369029_+	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	3.3e-143	57.0
WP_038617167.1\|1368949_1369687_+\|head	head morphogenesis protein	A9YWZ8	Burkholderia_phage	1.2e-69	56.3
WP_038617169.1\|1369689_1370997_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	4.5e-43	36.6
WP_038617172.1\|1371010_1371496_+	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	3.4e-36	52.8
WP_038617175.1\|1371572_1372574_+	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	5.8e-123	68.5
WP_038617177.1\|1372573_1372870_+	hypothetical protein	A9YX24	Burkholderia_phage	2.2e-06	43.8
WP_038617179.1\|1372872_1373271_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	3.0e-30	51.2
WP_038617181.1\|1373272_1373752_+	hypothetical protein	A9YX26	Burkholderia_phage	7.4e-36	52.6
WP_038617183.1\|1373755_1374130_+	hypothetical protein	NA	NA	NA	NA
WP_038617186.1\|1374133_1374697_+	hypothetical protein	A9YX29	Burkholderia_phage	2.8e-50	52.7
WP_038617188.1\|1374709_1376188_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	3.2e-130	52.5
WP_038617191.1\|1376197_1376641_+	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	1.1e-41	60.1
WP_038617193.1\|1376640_1377042_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	4.8e-12	33.3
WP_038617196.1\|1377214_1379071_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	7.3e-55	27.9
WP_051595262.1\|1379067_1379658_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.6e-32	41.4
WP_038617198.1\|1379659_1379968_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	5.3e-19	44.6
WP_038617203.1\|1379964_1380888_+	hypothetical protein	A9YX04	Burkholderia_phage	9.3e-51	39.3
WP_038617205.1\|1380880_1381519_+	hypothetical protein	A9YX06	Burkholderia_phage	1.7e-43	42.3
WP_038617209.1\|1381520_1381871_+	hypothetical protein	NA	NA	NA	NA
WP_038617216.1\|1381912_1382266_+	hypothetical protein	A9YX11	Burkholderia_phage	1.8e-34	65.0
WP_038617220.1\|1382262_1383441_+	bacteriophage protein	A9YX12	Burkholderia_phage	1.6e-135	65.2
WP_038617221.1\|1383440_1384103_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.0e-83	67.3
WP_081804307.1\|1384167_1385067_+	hypothetical protein	A9YX14	Burkholderia_phage	7.0e-19	62.8

DBSCAN-SWA_4

5266576 : 5276302

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038615194.1\|5266576_5267920_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.4e-33	27.3
WP_038615197.1\|5267968_5269381_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-50	30.4
WP_038615199.1\|5269387_5270323_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.9e-19	31.7
WP_038615201.1\|5270319_5270877_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.8e-49	52.8
WP_038615203.1\|5270873_5271761_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.8e-97	57.8
WP_038615205.1\|5271757_5272807_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.1e-83	48.3
WP_081804538.1\|5272973_5274146_+	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	3.1e-27	27.7
WP_081804539.1\|5274120_5274990_+	hypothetical protein	NA	NA	NA	NA
WP_081804241.1\|5274877_5276302_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.1e-13	29.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007444

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection