CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007476	Ehrlichia chaffeensis str. Liberty, complete genome	2 crisprs	cas3	0	2	0	0

Cas Category Instructions

Results visualization

1. NZ_CP007476

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007476_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007476_1

27622-27711

Orphan

Consensus_repeat	Method
TTTTTGTTTACTATAGCAAAAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007476_1

>merge|NZ_CP007476|1|27622-27711|CRISPRCasFinder
TTTTTGTTTACTATAGCAAAAGCTGTTGATAAGTTTATACTAGTTGTTGTTTTTCCTACACCACCTTTTTGATTTACTATAGCAAAAGCT

>NZ_CP007476|1|1|27622-27711|CRISPRCasFinder
TTTTTGTTTACTATAGCAAAAGCT	GTTGATAAGTTTATACTAGTTGTTGTTTTTCCTACACCACCT
TTTTGATTTACTATAGCAAAAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007476.1\|WP_044160793.1\|23603_24089_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP007476.1\|WP_044147512.1\|38303_39146_-\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NZ_CP007476.1\|WP_011453045.1\|28731_29997_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP007476.1\|WP_006010636.1\|28317_28725_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP007476.1\|WP_011452345.1\|21356_23258_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP007476.1\|WP_044147496.1\|30416_30962_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_044160799.1\|34406_34835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_044160805.1\|36113_36950_+\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NZ_CP007476.1\|WP_080502261.1\|24347_24737_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP007476.1\|WP_011452342.1\|24717_25425_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP007476.1\|WP_006010628.1\|25408_25936_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|173056
NZ_CP007476.1\|WP_044148120.1\|20059_20524_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP007476.1\|WP_006010644.1\|31412_34001_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP007476.1\|WP_011452349.1\|18247_19267_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_006010630.1\|26093_26939_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP007476.1\|WP_006010634.1\|27856_28321_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|223396
NZ_CP007476.1\|WP_011452348.1\|19335_20037_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP007476.1\|WP_155265740.1\|35297_35663_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_044147504.1\|37122_37938_+\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NZ_CP007476.1\|WP_011452346.1\|20810_21332_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582

Protein	Function_ID	Function_description	E-value
NZ_CP007476.1\|WP_044160793.1\|23603_24089_+\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	1.56766e-55
NZ_CP007476.1\|WP_044147512.1\|38303_39146_-\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	5.05837e-126
NZ_CP007476.1\|WP_011453045.1\|28731_29997_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP007476.1\|WP_006010636.1\|28317_28725_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	8.28312e-48
NZ_CP007476.1\|WP_011452345.1\|21356_23258_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP007476.1\|WP_044160805.1\|36113_36950_+\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	4.85282e-43
NZ_CP007476.1\|WP_080502261.1\|24347_24737_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.30977e-57
NZ_CP007476.1\|WP_011452342.1\|24717_25425_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.0968e-137
NZ_CP007476.1\|WP_006010628.1\|25408_25936_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|173056	PRK14592, rimM, 16S rRNA-processing protein RimM; Provisional.	8.7732e-94
NZ_CP007476.1\|WP_044148120.1\|20059_20524_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	3.08978e-43
NZ_CP007476.1\|WP_006010644.1\|31412_34001_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP007476.1\|WP_006010630.1\|26093_26939_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.19546e-71
NZ_CP007476.1\|WP_006010634.1\|27856_28321_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|223396	COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only].	7.45116e-36
NZ_CP007476.1\|WP_011452348.1\|19335_20037_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.09795e-59
NZ_CP007476.1\|WP_044147504.1\|37122_37938_+\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	4.41619e-92
NZ_CP007476.1\|WP_011452346.1\|20810_21332_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.15803e-71

>NZ_CP007476.1|WP_006010630.1|26093_26939_-|ParB/RepB/Spo0J-family-partition-protein
MTKRLGKGIFELIGNSTLEINNNISTDTHLTMPINLLNPSTSQPRKTFNQECLKELAESISKHGIIQPIIIRKNPHKKGYEIIAGERRWRASILAKLKSVPVIVKEISDSQCLELSIIENIQRQDLTPIEEAEAYSNLINTFSYTHEDLASIIGKSRSHITNMIRILSLPTSIKSMINDKLISFGHARALINIENPEAIAEKIISLNLNVRQTELLIKNLQKPHKKKSKENLTELEQSLSEILNLQIKINGLKNKGSIVIKYNNTQQLNSILEKLKKVTQT
>NZ_CP007476.1|WP_006010628.1|25408_25936_-|16S-rRNA-processing-protein-RimM
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIIIAQIKGIVSRTDADLLRNKKFFVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKIHNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYIIITLPEVIGNNSDIQR
>NZ_CP007476.1|WP_011452342.1|24717_25425_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MTFNVNVLTIFPEMFPGTLSHSIIGRALNKGLWNLNVIDIRSFAKDKHKTVDDRPYGGGPGMIMKADVIGSAIDEVLSKNKNTKLIYMSPSGIKLNQDISGQLTHFSNITILCGRFEGIDKRILDFYDFHEISIGDYILSGGEVACMVLIETCVRLIPGVVSNTQSIRDESFTLDYKLEYPQYTRPAKWRGLEVPDVLLSGNHKKINLWKANQSYCITKQRRPELTGTIDGDIYE
>NZ_CP007476.1|WP_080502261.1|24347_24737_-|50S-ribosomal-protein-L19
MEIYMSDLLKEFNEQQMKLLSNKEIPKFSSGDTLRVSMKIFDGVSERLQVFEGVCIKRKNNGLHSSFTLRKISYNESIQLQVFLYSPIVESIEVIKFGRVRRAKLYYMLSLFGKSARIKERSDRTKKLS
>NZ_CP007476.1|WP_044160793.1|23603_24089_+|CinA-family-protein
MIIEQEILKKAETCVSKLIENNSKIVIAESCTAGLMSFLFSCIPGASKVLDSSFVVYSDESKAKFLNIDKDLISKYGAVSSEISVLMAVGVLENSKANVSVSITGFAGPRVGDEQVGLVYIGYASNIERDCKKYYFSDMNRCKVQMSSASAAMDFLLHKMK
>NZ_CP007476.1|WP_011452345.1|21356_23258_-|threonine--tRNA-ligase
MINIHFSNNLCKQFHRGIKGHDIVNDLFPKLKNETIAAKVNGELYDLSREIIENCTFEVITINSEEGLEIIRHDTAHIMAQAVKEMFPDVQITIGPTIKDGFYYDFATNHNFSSDDLEIIEKKMIEIINKNESFIREVWSREEAIKFFSSIGEDYKVKIISNIPSNENITVYKQGSFTDLCRGPHAPSTKTSRAFKLTKVSGSYWQGNSNNERLQRIYGTAWRNEEELKLYLNNLIEAEKRDHRKIGRELELFHIQNEACGQIFWHTKGWTIYRIIENYIRKKLENNGYIEVKTPILLNKELWEKSGHWDKFRENMFLSEAEDKTLAIKPMNCPCHIQIFNSKIRSYRDLPIRMAEFGTCHRYEASGALHGLMRVRGFTQDDAHIFCTESQITSEALKFCNLLIEIYKDFGFTDILVKFSDRPKNRAGSDEIWDKAEAALKKSVEVANLSYVLNPGDGAFYGPKLEFTLKDAIGREWQCGTLQMDFVLPERLGAYYIGSDGKKHHPVMLHRAILGTFERFIGILIEHHSGKFPMWLAPIQLSILTISEDSINYANSLKIKAEEHNIRVELDTTNEKINYKIRNHIHKKVPVFWIVGKKEVEENSVSIRYLESNKQHVMPIDKALKTLLTCASI
>NZ_CP007476.1|WP_011452346.1|20810_21332_-|translation-initiation-factor-IF-3
MKTKKFSNKNKINEMITAKKVKLVDQNSVMIGVVDIEEALSRAKAVNLDLVEIVHDDQYPLCKIFDYSKYRYSHKKKISDSKKKQKTIIVKELKFKLNIGDNDYNVKLNMLRGFIERGDKVKISLRFIGREILHPEVGMEIIERLIRDTADIAKPENLPKKEGNIINMVLTAK
>NZ_CP007476.1|WP_044148120.1|20059_20524_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MQFKYSSVDLVFLEKLARFIALGLKKGDSISLVGDLGVGKTTFVRFLVHALAPCEDVGSPTFSIINEYHSNKFTIYHIDLYRINSLREVYDLGIESICDDGVGIIEWPDLLNDILDFNLKINIKYSTKENLRDVEVFIKDDDKCGIFESFVSSN
>NZ_CP007476.1|WP_011452348.1|19335_20037_+|Bax-inhibitor-1/YccA-family-protein
MDNYSNVQQGAYYSAGLRNYLVKVYNYMAMALGLTGIVAFFVASSPAVISMVYNTPLHWVIVFAPMGLVFLMSYKLNVLSFQAILMIFFSFAALVGVSISYVFLVYTAASIAKVFFISSSMFGVMAWYGNVTKKDLSQFGTFLFMGVIGIAIASLVNLFLGSGPLHFALSVVAVVVFTGMTAYDAQRIKDMYYKFNDGTDSSVNKMAILGATTLYFNYINIFISLLNLQGERK
>NZ_CP007476.1|WP_011452349.1|18247_19267_+|hypothetical-protein
MSVEGRMFGEDRRQLEQYEGISRGDIQRKLYNSMLLKLDRQDLIRKKIVMVTSVLYFVVFVSFAVMQSGVLDLTQNQLTLFANFMDYLALFLCVTFLIAGLYNVLYLEREKRKVNEKLKRISQDQFDERVNPTSIKFANFCETHANKFDLAGTFCTTIMQAIAVFSLTLPAIFDVSKIPVDTAFNLQGIVDTVGNILFTIAAGMFLCSYMIKCNKNKNKDGKSTYSVAQSLVLTSLFFGTFLILAGKVLLSFETRGGAMYTGVLGPLGMDAFPMALIVRAVGMAIFCFGYGLMLYMSTQQHDKLSNEVRNGLPKGASVNSNMQDVEQICCETRHLLQDS
>NZ_CP007476.1|WP_006010634.1|27856_28321_-|rRNA-maturation-RNase-YbeY
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLNKYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET
>NZ_CP007476.1|WP_006010636.1|28317_28725_-|EVE-domain-containing-protein
MSYWLLKTEPQDFSWDDMVRDNVTVWDNVLNYQAQNYLKTMKYNDLAFFYHSGKEKGIIGIVSIDKEFYLPNTNNKFGVVEVKTHIKLNKTVFLKDIKSNPTLKTMLILKQPRLSVSQVTEQEWNCILHLGETIL
>NZ_CP007476.1|WP_011453045.1|28731_29997_-|cell-division-protein-FtsZ
MSLNICLPDQSLLRPRITVFGVGGAGGNAVNNMIQSNLHGVNFVVANTDAQALELSLSEKKIQLGIGLTKGLGAGSLPEVGRGAAEESINEIIEEISDSNMLFITAGMGGGTGTGAAPVIARVAKENKILTIGVVTKPFHFEGAHRMRTAEFGLEELQRYVDTLIVIPNQNLFRIANEKTTFADAFKLADTVLHTGVRGITDLMVMPGLINLDFADIRAIMSEMGKAMMGTGEAEGENRAIAAAEAAISNPLLDNISMKGAKGILINITGGLDMTLFEVDAAANRIREEVDSHANIIFGSTFNKESEGKIRVSVLATGIDNEEVVIQNKSALKDKEAHNDKLSETSSKPFNPLDNEIAYYKPSNPGEDMIHSINHTKKQDHNIENQKSNNKIPESAYKMQFNKNEYWDEESFNIPTFLRKK
>NZ_CP007476.1|WP_044147496.1|30416_30962_+|hypothetical-protein
MNTDYDFCQVDFLIQQNGHSNIDVYHGKLHINAQGDEYYASGDIANDVTGDKGVINIINHGTNGVYGDVYCGKCDLQITLEHHDPATDIKNVTSINKTFLISILSGFDACLLVDEHNLLLTDPSKGAGVNDEPVVSILLHNGTDANMIRDSFNKDYKVFQDEGKTYKYVYVDQERMASIEK
>NZ_CP007476.1|WP_006010644.1|31412_34001_-|preprotein-translocase-subunit-SecA
MLSIAHKIFGSTNSRIIKSFHKVVQDINAIEHEIQLLSNEALKHKTIEFKEELKNGKTLDDILVPAFAVVREASKRVLNMRHFDVQLIGGIVLHKGMISEMKTGEGKTLVATLAAYLNALEGKGVHIVTVNDYLAKRDAEWMGELYSALGITVGCILTETNDLERKNAYNCDILYSTNNNLGFDYLRDNMKFSRDEMVQRGFNYAIVDEVDSILIDEARTPLIISGQVDQDIKMYKKIDNLIYELAEEDYELEEKNRNIFLTEAGITKIENLLIQHNLISSNTSLYDIDNIIIMHYITQALRAHKMFAVDKDYIIKDGNIVIIDEFTGRMMDGRRYSDGLHQALEAKEKLNINSENQTLASTTFQNYFRMYTKLSGMTGTAETESEEFLGIYNLQVVQIPTNIPVQRIDLNDDIYCTEEEKFNSVIKFISECHKKLQPVLVGTVSIEKSEMLSKLLTKNKLKHSVLNARYHEQEAYIIAQAGIPGTITIATNMAGRGTDIQLGGNLKMLAKTALANITDKEAIEIKYKQLTEKVNRDKEIAIQAGGLCVIGTERHESRRIDNQLRGRSGRQGDPGLSKFFLSLEDDLLRIFGSDKIKGVLQKLGMKKDEAIQHTWISRSIEKAQHKVESRNYDIRKSLLKFDNVINEQRKVVFDQRNKILDSDSYDISIIYRDLNSDIVNSIIHDKYYNLDDDTYKALSSEFTRIYNITLDYSTISNFESKDKVLEHLNETVDEHFAQKIEEFTLKDQKAWDHVVKKVMIMSLDYLWRDHLAALDSLKCGINLRSIAQKDPLNEFKAEAFSMLENMMSKFYELIIQRLSHLKFDIELNDTQRIEYNIHHSKISRNEKCPCGSGKKFKHCHGA
>NZ_CP007476.1|WP_044160799.1|34406_34835_-|hypothetical-protein
MDIFGNEFDVHVNANGTEYAGKMSIDSNGDFDVNLDLQDGVGTLGHLSGHISQSEDAANYIIEYIFDQCIIYPELPVLHSFNGQIVSPAEEGSIIFDNGDNIQISLHGLQEQPEEAIPAAEVEEAVPAEAAIPAAEVTENQQ
>NZ_CP007476.1|WP_155265740.1|35297_35663_-|hypothetical-protein
MNDLDLYNETNISTETADYSHLPTSHLMNALNHDCVSRFEVKLSPTSVDNEYSVDFTFEQYKNNAEQDLLKLIVGEFGVNFDPEHHKLSLIDGDTSVILEEDMINSCLSCIKVVQKDHSAE
>NZ_CP007476.1|WP_044160805.1|36113_36950_+|P44/Msp2-family-outer-membrane-protein
MRYRISVIILMLLLVPCCCFSGSLDVSDSLNSRLKPVFLGISYKLSAPLFSSFSIGETYRINGVKTDRVVGLKSDILLDADKAIKDFNNFNFSEEYVPKYDNNIFGLSFIFGYSFRNLRVELEGSYKKFDVIDTKNHLVDNNYRHIALVRSNPPTLYDYFVLKNDGVEFYSTILNICYDFAVDTSIVPFSCVGIGEDIIKIFDSIRFKPSFNSKLGINYLMSQDMLLFFDVYYHRVVGNEYNNIPVQYVSLPNPLNISAAAKLDMEYFGAEIGIKVFV
>NZ_CP007476.1|WP_044147504.1|37122_37938_+|P44/Msp2-family-outer-membrane-protein
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPGLTKSIFALGLDKSSISSYGDFTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEPERQWYPEGGESHKFFALSRNTTMADNKFIVLENDGVIDRSLNVNFCYDIAHGSIPLAPYMCAGVGADYVKFLGISLPKFSYQVKFGVNYPVSLNVMLFGGGYYHKVVGNRYERVEIAYHPGGLDTYPKTTSASATLDTDYFGWEVGMRFTL
>NZ_CP007476.1|WP_044147512.1|38303_39146_-|P44/Msp2-family-outer-membrane-protein
MNYKKVFITSALISLISSLPGVSFSDPTGSGINGNFYISGKYMPSASHFGVFSAKEERSTTAGVFGLKQDWDGSAISHTTPENIFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVSYETFDVKNQGNSYKNEAHRYCALSHHSSGTSMSSAGDKFVFLKNEGLLDVSFMLNACYDVISEGIPFSPYICVGIGTDLVSMFEATNPKISYQGKLGLSYSISPETSVFIGGHFHKVIGNEFRDIPAVIPSGSSLTGNHPAIVTLDVCHFGIELGGRFAF

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Crispr_ID: NZ_CP007476_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007476_2

1051806-1051989

Orphan

Consensus_repeat	Method
AGGTGTTGCAAATTCTGCACCATCATTAGTACCAGCTGCAGGTGTTGCAGG	CRISPRCasFinder
GCTGCAGGTGTTGCAGGTGTT	CRT

3 spacers

The CRISPR arrays of NZ_CP007476_2

>merge|NZ_CP007476|2|1051806-1051989|CRISPRCasFinder,CRT
AGGTGTTGCAAATTCTGCACCATCATTAGTACCAGCTGCAGGTGTTGCAGGCGTTACAGATGCTGTAGGTGTTACAGATGCTGCAGGTGTTGCAAATTCTGCACCATCATTAGTACCAGCTGCAGGTGTCGCAGGTGTTGCAGATGCTGTAGGTGTTACAGATGCTGCAGGTGTTGTAGGTGTT

>NZ_CP007476|2|2|1051806-1051940|CRISPRCasFinder
AGGTGTTGCAAATTCTGCACCATCATTAGTACCAGCTGCAGGTGTTGCAGG	CGTTACAGATGCTGTAGGTGTTACAGATGCTGC
AGGTGTTGCAAATTCTGCACCATCATTAGTACCAGCTGCAGGTGTCGCAGG

>NZ_CP007476|2|1|1051840-1051989|CRT
GCTGCAGGTGTTGCAGGCGTT	ACAGATGCTGTAGGTGTTACAGAT
GCTGCAGGTGTTGCAAATTCT	GCACCATCATTAGTACCA
GCTGCAGGTGTCGCAGGTGTT	GCAGATGCTGTAGGTGTTACAGAT
GCTGCAGGTGTTGTAGGTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007476.1\|WP_006010160.1\|1050483_1051032_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379658
NZ_CP007476.1\|WP_044148079.1\|1046013_1047015_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP007476.1\|WP_006010135.1\|1044055_1045138_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP007476.1\|WP_006010616.1\|1063918_1064353_+\|CopD-family-protein	unknown	unknown	gnl\|CDD\|367596
NZ_CP007476.1\|WP_011452439.1\|1043311_1043908_-\|variable-length-PCR-target-protein	unknown	unknown	gnl\|CDD\|284524
NZ_CP007476.1\|WP_006010150.1\|1051018_1051522_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP007476.1\|WP_044161063.1\|1059895_1061914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_006010158.1\|1055646_1056168_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP007476.1\|WP_006010620.1\|1065049_1066756_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP007476.1\|WP_006010618.1\|1064454_1065036_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP007476.1\|WP_011452435.1\|1054848_1055559_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
NZ_CP007476.1\|WP_006010128.1\|1041267_1042866_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP007476.1\|WP_044148081.1\|1047748_1048735_-\|tandem-repeat-protein-effector-TRP47	unknown	unknown	gnl\|CDD\|380243
NZ_CP007476.1\|WP_006010146.1\|1049462_1049843_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NZ_CP007476.1\|WP_006010137.1\|1045245_1045857_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|366423
NZ_CP007476.1\|WP_044161060.1\|1058283_1059711_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP007476.1\|WP_011452433.1\|1056807_1057896_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP007476.1\|WP_044148086.1\|1053285_1054608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007476.1\|WP_006010148.1\|1049854_1050157_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NZ_CP007476.1\|WP_011452429.1\|1062405_1063404_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|169719

Protein	Function_ID	Function_description	E-value
NZ_CP007476.1\|WP_006010160.1\|1050483_1051032_+\|redoxin-domain-containing-protein	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	8.71889e-05
NZ_CP007476.1\|WP_044148079.1\|1046013_1047015_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	3.8761e-177
NZ_CP007476.1\|WP_006010135.1\|1044055_1045138_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.64582e-98
NZ_CP007476.1\|WP_006010616.1\|1063918_1064353_+\|CopD-family-protein	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	3.02275e-55
NZ_CP007476.1\|WP_011452439.1\|1043311_1043908_-\|variable-length-PCR-target-protein	gnl\|CDD\|284524	pfam07122, VLPT, Variable length PCR target protein (VLPT). This family consists of a number of 29 residue repeats which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. Ehrlichia chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown.	1.12177e-07
NZ_CP007476.1\|WP_006010150.1\|1051018_1051522_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	1.29575e-82
NZ_CP007476.1\|WP_006010158.1\|1055646_1056168_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	3.06261e-83
NZ_CP007476.1\|WP_006010620.1\|1065049_1066756_+\|potassium-transporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	5.33199e-122
NZ_CP007476.1\|WP_006010618.1\|1064454_1065036_+\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	4.32101e-78
NZ_CP007476.1\|WP_011452435.1\|1054848_1055559_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	4.59482e-66
NZ_CP007476.1\|WP_006010128.1\|1041267_1042866_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007476.1\|WP_044148081.1\|1047748_1048735_-\|tandem-repeat-protein-effector-TRP47	gnl\|CDD\|380243	NF033393, TRP47_fam_Nterm, TRP47 family tandem repeat effector. This HMM describes a conserved N-terminal domain of a family of proteins found, so far, only in the genus Ehrlichia. The repeat region is followed by a long repeat region with a large content of acidic and serine residues, but other than in composition, the repeats themselves may be unrelated from one lineage to another. Characterized examples, such as TRP47 from Ehrlichia chaffeensis, are glycoproteins and are immunodominant antigens.	1.0819e-61
NZ_CP007476.1\|WP_006010146.1\|1049462_1049843_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.44647e-35
NZ_CP007476.1\|WP_006010137.1\|1045245_1045857_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|366423	pfam01025, GrpE, GrpE.	6.49567e-49
NZ_CP007476.1\|WP_044161060.1\|1058283_1059711_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP007476.1\|WP_011452433.1\|1056807_1057896_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP007476.1\|WP_006010148.1\|1049854_1050157_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.38767e-33
NZ_CP007476.1\|WP_011452429.1\|1062405_1063404_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|169719	PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.	0

>NZ_CP007476.1|WP_006010150.1|1051018_1051522_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSTNKNIADVAVIMGSQSDFSTMNNSISILKELNITHEVMIISAHRTPERLYTFAKSAEDNGFKVIIAGAGGAAHLPGLVASLTHIPVIGVPVKSSNLNGIDSLLSIVQMPKGIPVATMSIGSSGGYNAAIMAASILSLENDEIRKNLKIWRKNLSDSVKLIPDIPL
>NZ_CP007476.1|WP_006010160.1|1050483_1051032_+|redoxin-domain-containing-protein
MNNKHFIFFTCIIFLFILLTINKISSYYQIQRNMPDTLLQIKEINSDKALSEMFTIKDSKVNILVIYTSWCSSCIKKLPEINKVIANNENIHPIIISLDENKNKLLSFLSKQGTLYFTPYNVPPNHMKKLLSHLTNKGITFDHHIPYIAVLYNGMNPITNINSVSQLKSTIKDIIEKYHVNQ
>NZ_CP007476.1|WP_006010148.1|1049854_1050157_-|integration-host-factor-subunit-alpha
MTQTLTKSKIAEVINRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKKARMGRNPKTSEEFVIKERYTVSFYPSILIKHSINSDDSTE
>NZ_CP007476.1|WP_006010146.1|1049462_1049843_-|MerR-family-transcriptional-regulator
MGEKKILHDEYSSKLKTIGEVAKDLDVEQYVLRFWEEKFPQVNPIKRRGRRLYSQVDVDTLKHIKHLLYDKGYKIKGVQQELGRKPANINKHTNDTEQSVYRKDLISLLDDMLSLRDSLLKKFNGM
>NZ_CP007476.1|WP_044148081.1|1047748_1048735_-|tandem-repeat-protein-effector-TRP47
MLHLTTEIDNIDFSNNLNIHSGNRFVVTSGDMQVDVGSDPDHGYHLLFKNNGHVISDFHGVQAENFVFDVKNHNLRASFLVDVMAPFTELDSSQHPHFSVNMHTANECNSDCVYHNEHDHDAHGRGAASSVAEGVGSAIGQILSVSDSIVVPVLEGNASEPVVSQEAAPVSESGDAANPVSSSENASEGNASEPVVNQETAPVSESGDAANPVSSSENASEGNASEPVVNQEAAPVSESGDAANPVSSSENASEGNASEPVVNQETAPVSESGDAANPVSSSENASEGNASEPVVNQETAPAIQPQSRNSLLSEEDITAQFGNKYFYF
>NZ_CP007476.1|WP_044148079.1|1046013_1047015_+|tryptophan--tRNA-ligase
MSIPIVLSGIQPSGGIHLGNYLGSIRNWVSLQSSYKCFFFLADLHTLTSNNYNSAELKQNSINTLATYLACGIDPNKSVLFVQSSIHAHAELLWIFSCITSTGQLNRMTQFKEKSRNKVSTACLGLYSYPVLMAADILIYKANIVPVGIDQKQHLELTRDIAMNFNSTYNTQYFQIPEPLIMQESAKIMNLRNGKKKMSKSDSSDYTRINLYDSNDVILKKISKATTDSIVGFNFSTLDSRPEVKNLVSIYATLLNINIEQACTNIENFSTKQFKEQLTELLIDNIAPIRHKVTEFLEDKEHLHNIIVSGNNKAASIANKHILEIKEIIGCWS
>NZ_CP007476.1|WP_006010137.1|1045245_1045857_+|nucleotide-exchange-factor-GrpE
MSDNGDNNTKSPQHNNPQPNEKSDGKVQPGQPQVNPQRKFTAGINKKKEKLNEDLSELDKLRQQLIHFQNQFRLAVADKENVKRIMQKNIDDTSIYAISNFARDLLSSCDNLETSLKNLKEGDSIHAGVLMTYKELLNTLERHNITRIDPIGEKFNPQFHKAVSQMVDAEKDDNTILHVVQPGYIIKDKLLRAASVIISKKSD
>NZ_CP007476.1|WP_006010135.1|1044055_1045138_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGHLAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSDVIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE
>NZ_CP007476.1|WP_011452439.1|1043311_1043908_-|variable-length-PCR-target-protein
MSQFSEDNMGNIQMPFDSDSHEPSHLELPSLSEEVIQLESDLQQSSNSDLHGSFSVELFDPFKEAVQLGNDLQQSSDSDLHGSFSVELFDPSKEEVQLESDLQQSSNSDLHESSFVELPGPSKEEVQFEDDAKNVVYGQDHVSLSELGLLLGGVFSTMNYLSGYTPYYYHHYCCYNPYYYFDYVTPDYCHHCSESSLE
>NZ_CP007476.1|WP_006010128.1|1041267_1042866_+|CTP-synthase
MNQASTRFIFVTGGVVSSLGKGLAAASIGALLQARGFKICLRKLDPYLNIDPGTMSPIQHGEVFVTDDGAETDLDLGHYERFTGVKTTKNDNITTGKVYHNLLKKERRGDYLGQTVQIIPHVTDLINSFILHDTDKLDFVICEIGGTVGDIESQPFLESIRQIGYKLSKNNTIFVHLTLVPYIDAAMELKTKPTQHSVKELSSVGIQPDIILYRSKIPLSKEQRDKIANLCNVSSTNIIPALDVKNIYELPISYHNYNLDTQILNHFNIDSPEPDLRKWENILNISHAVTKTVNVAIIGKYIKLLDAYKSLIEALEHASIHNKVKLSIKWIDSRSLDSNEINIFDKVDSILIPGGFGDDGIQGKMTAITYARLNKIPFLGICMGMQLAIIEFANNVAHLEDANSTEFNLYCKNPVIHQLPELQQNFLGGSMKLGSCPCYLESGSKIFSIYQQSIIHERRRHRYAFNLQYKDLLEQHGLIFTGKSNNNNDSLIEVIELKDHPWFIGVQFHPEFKSSPFHSHPLFISFIKASLD
>NZ_CP007476.1|WP_044148086.1|1053285_1054608_-|hypothetical-protein
MIGGNTQTPNDYVPIRRHQLSHNSIKSLTKKLFLLNTSIGIVSVIHASFLIMLFDAMCLQKKPKHTILTLAALIAVISVVSLLLFYVRYTVSKKNKRHLESMHANAESFVSLLQDRQLLDNLSHKVHHLQHLAHELESIDEKGVFIEHASQRISASRVDVEKQLRNFVKHCEDDLSKMYRELEGVTVDMSEVSGILLNPSFFKENEAGLMSLSERCKLMSQKEHEINLLMKGYCSEILAKIVCIIEMMKLHQSSSVENKKVSLFSEDDSKVKKLIRILVNTKCVLEELDGEEIKYPTFEMLCNVMWNIDSFLSSMRCMAKESVYKKAENLIQEKGKQVQRFISGILSAVRKLDVVKQEQGSEATSSEHTMSEEDSIVALRLVQLQSIILKLLFIMQRNKSYDIHTETCSENSNGPIDSEENPDFAVQNLQSVSCSGIMLT
>NZ_CP007476.1|WP_011452435.1|1054848_1055559_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MHKFTLLIVAAGNSNRFKWSAIPKQYCSLGNHNILCSTINNMISHPKINYVKVVIRKEHQHLYDNCLQKIQNDKLLPPTYGGKRRQDSVRMGLESIQNINPYFVIIHDACRPFIDLKILDTMESILTHYAGVVPVLSITDTIHVVHENKTVIQNVDRNSIKLIQTPQAYKYSEILLHHRIAYNTEPNREFPDESSLMIHYNIPIMTTEGDYNNFKITTIEDLHRAILYTKHIDHNY
>NZ_CP007476.1|WP_006010158.1|1055646_1056168_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MNQHPNKPIFKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDPSCINVKATTTEKLGFLGRKEGIAAQAIVLCCLQN
>NZ_CP007476.1|WP_011452433.1|1056807_1057896_+|redox-regulated-ATPase-YchF
MGLNCGIVGLPNVGKSTLFNALTQTMVAEVANYPFCTIEPNIGKAIVQDHRLKTLANIASSKKIIYNQVECVDIAGLVSGASQGEGLGNKFLSHIREVDAIIHVLRCFGDQNISHVNQTVDPISDAEIVEMELILADIESLKRRLPATEKAVKANKEPRKKLDTILEVLSVLEAGNLAKSAKHLGDDLKQLQLITTKPMMYVCNVEESNVTTGNALSEKVKLMAEKKHNKFCCISAKLEADVSSLETEEEKQIFLAEFNLQESGTTSVVKTMYDLLDMITFFTLGPQEARAWPIKRFSTASSAAGVIHTDFEKGFIKAELISFDDYIKYNGEAKCKEAGKVRFEGRDYIVQDGDIIHFRHNK
>NZ_CP007476.1|WP_044161060.1|1058283_1059711_-|metalloprotease-TldD
MNISNVEQMLLAHNQVNESTVNRIVRDSLCVADGGELFLEMCVSESLGLENGILKYADFNSHQGFGLRSFCKELTAFVCSSEITEQEIENAAALVKSINNSNSGGIVHLNKAKPILYPETNPLQKMDFDLKVKLLQQVDDYLHSKSPYVRQVKSSLSGQWQIVYIILPTGDRVYDVRPLIRFNVCVILEKDGRKESGSSGHGGRASYEEFIGDGKWQMVADEALRQALVNLESVPTPAGEMTVVLGPGWPGVLLHEAVGHGLEGDFNRKKVSAFSTSIGKKVAAKGVTVVDDGTIPGRRGSINIDDEGVSSGYNVLIQDGILVNYMQDRMNANLMGTTSTGNGRRQSYQDVVMPRMTNTYMLPGSYCPEEIIASVKKGVYAVHFSGGQVDITSGKFVFSASEGYLIEDGKVTCPVKGATIIGNGPDVLTKVSMIGDDLKLDPGIGTCSKNGQDVPVGVGQPTLKIDSIVVGGTEV
>NZ_CP007476.1|WP_044161063.1|1059895_1061914_+|hypothetical-protein
MLTSPELQESNTINPDNSIVIAALGESILPEFSHNILHEVLQDSLKISYTLHHVEENKPITISRISQALCNFLEFYVTKNFILPYYSNSAGDAPSLTQQPLHFKIRVNNTTESETILPSTILSQTSFDKITITSALKSIISSLLSNELSKHPIIGLNQQLTLSFDTIFNIPFDINTLNNNLATNLPTVKGIYKLYSIIELYNNSPTTTLIPDSQPKDLKLAVIHVKDPQNKKSNALISACITTSDPQCRTSATDFIKGLCSTQYNYLNLFTIYKIDSQAFNTLPDPQECSLTCHKQPTASSDAVTYKITCHNLTEETFCNQIHNYIFTLSTLYGTQHLALSLEFSLKKDITITHNTTLEPRFEFPDLNTHTNIKKLLCTVCNISYHPVSRAFSKKNTADIVKACLNSYDIYLHIIPSQNISQQISTVSSTSFATQDDQITTPESTQHPELITRHKLTKHTSQPSLQTTTQLQTTDLLSHPTTSRPSQIQPLTPISDDITPTTEDTSLSTTTPTLSQVQASTSGATSSTIEPDIQRQREFLPSIVQDNSYIARIQEDISALRKTIKPVKRTQIYRSTNIQHSKRNLIIAYITISTLTICSIIGVLFPLRCYVSSEMENIKSITVISIFCIAAIAFIGAMLYYHIKTPNNLVETTVSNPTDIAATRNMPGTYTS
>NZ_CP007476.1|WP_011452429.1|1062405_1063404_+|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MRTLTVREALCEAIREEMERDHTVLIMGEEVGEYQGAYKVTQGLLEQFGPDRVIDTPITEHGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTSYMSGGQLNCPIVFRGPNGAAARVGAQHSQCYASWYAHIPGLKVVSPYFAADCKGLLKAAIRDLNPVVFLENEIAYGHKHEIPNEVSTSDYITEIGKAAIVKEGTDITITAFSLQVKFALEAAELLAKEGINAEVIDLRTLRPLDTETILRSIKKTNKIISIEEGWPYSGIGSEIAALIMEYAFDDLDAPMIRITGKDVPLPYATNLEKLALPQIEDILEAARALCIRNYR
>NZ_CP007476.1|WP_006010616.1|1063918_1064353_+|CopD-family-protein
MIDYEHWVEAFHIISIITWMAGMLYLPRLYVYHVQVALHSDSYSLLNTMEKRLLFYIINPSMISSIVLGVILAFMTEAYHFLWFKIKVTCVILMCIIHMMLFKHRRDFVTKSNTKSLLYFKCLNESVTLLIIVIVIMVVVKPFM
>NZ_CP007476.1|WP_006010618.1|1064454_1065036_+|thioredoxin-family-protein
MVALNTPPVNKKFIAKDFLLKSIDGNLYNLSSCHKGNGLLIMFICNHCPYVKAIINNLVYDVNTLKNDYNIYTVAIMPNDTITYPEDSFDNMINFAQEHSIDFPYLIDENQTVARNYGAVCTPDFFGFNNKLELCYRGRFDASGKNQMNSKQEDRDLFNAMKLISKTGESPENQKPSIGCSIKWKSQDYKFVT
>NZ_CP007476.1|WP_006010620.1|1065049_1066756_+|potassium-transporter
MHDSKYLLDIITLLSAAIVIVVLFWKLNISPVLGYFVAGTLIGSNGLNLVESSVIIQNLGEFGVVFLLFLIGIELTFERLIAMRLHVFGFGTLQVIVTALAIWYISSQFGVDSKGSIIIGGALALSSTAIVLQVLQEKGYQSTQVGRLSIAVLLLQDFAVVPLIVLLPLLTGESHHSIPISLLYSFVKAAIALTLIFITGRLLLRPLFNTIAAMKSNEIFIATTLLIVLGAAFITENFNLSMALGAFVSGLLVAETEYRHDVEQVVLPFKRLLLGLFFMTVGMSIDIKFVLNKLPIITLASISLIALKSFIIFILCRFFRFQLAAAIQAGLLLSQGGEFAFILFGLAAEKNVLSSDLAQTLMMITTVTMAFTPLLATLGDWISKLITKKKISLNSQELILDTKDLDQHVIVVGFGRVGRMVAKVLVAEHVNYIASDIQPKIVKDGIDEGFPVYLGDLTKLNTLQSMAISRARMIIIAINNEVTIKKIISLVAKNFPHIIIIVRLPDLSNVEIYKELGAHYLIPETYEVGLQLGAVALSNNGFSNHAISLLKDRFRMVNYDAVKNKEDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007476_2	2.2\|1051861\|24\|NZ_CP007476\|CRT	1051861-1051884	24	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	222103-222126	3	0.875
NZ_CP007476_2	2.4\|1051945\|24\|NZ_CP007476\|CRT	1051945-1051968	24	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	222103-222126	3	0.875
NZ_CP007476_2	2.4\|1051945\|24\|NZ_CP007476\|CRT	1051945-1051968	24	MK813939	Aeromonas phage 4_L372D, complete genome	121595-121618	3	0.875
NZ_CP007476_2	2.4\|1051945\|24\|NZ_CP007476\|CRT	1051945-1051968	24	MK804893	Aeromonas phage 2-L372D, complete genome	112901-112924	3	0.875
NZ_CP007476_2	2.4\|1051945\|24\|NZ_CP007476\|CRT	1051945-1051968	24	NC_048770	Aeromonas phage 2_L372X, complete genome	108790-108813	3	0.875

1. spacer 2.2|1051861|24|NZ_CP007476|CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

acagatgctgtaggtgttacagat	CRISPR spacer
cctgatgctgtaggtgtgacagat	Protospacer
 * ************** ******

2. spacer 2.4|1051945|24|NZ_CP007476|CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

gcagatgctgtaggtgttacagat	CRISPR spacer
cctgatgctgtaggtgtgacagat	Protospacer
 * ************** ******

3. spacer 2.4|1051945|24|NZ_CP007476|CRT matches to MK813939 (Aeromonas phage 4_L372D, complete genome) position: , mismatch: 3, identity: 0.875

gcagatgctgtaggtgttacagat	CRISPR spacer
gcaggtgctgtaggtgttccagag	Protospacer
****.************* ****

4. spacer 2.4|1051945|24|NZ_CP007476|CRT matches to MK804893 (Aeromonas phage 2-L372D, complete genome) position: , mismatch: 3, identity: 0.875

gcagatgctgtaggtgttacagat	CRISPR spacer
gcaggtgctgtaggtgttccagag	Protospacer
****.************* ****

5. spacer 2.4|1051945|24|NZ_CP007476|CRT matches to NC_048770 (Aeromonas phage 2_L372X, complete genome) position: , mismatch: 3, identity: 0.875

gcagatgctgtaggtgttacagat	CRISPR spacer
gcaggtgctgtaggtgttccagag	Protospacer
****.************* ****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage