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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007481 Neorickettsia helminthoeca str. Oregon, complete genome 5 crisprs NA 8 5 0 0

Results visualization

1. NZ_CP007481
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007481_1 37119-37236 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007481_2 369965-370199 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007481_3 418026-418307 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007481_4 459115-459254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007481_5 549905-550017 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP007481_2 2.1|369999|29|NZ_CP007481|CRT 369999-370027 29 NZ_CP007481.1 369744-369772 0 1.0
NZ_CP007481_2 2.1|369999|29|NZ_CP007481|CRT 369999-370027 29 NZ_CP007481.1 369807-369835 0 1.0
NZ_CP007481_2 2.2|370062|41|NZ_CP007481|CRT 370062-370102 41 NZ_CP007481.1 370200-370240 0 1.0
NZ_CP007481_2 2.3|370137|29|NZ_CP007481|CRT 370137-370165 29 NZ_CP007481.1 369744-369772 0 1.0
NZ_CP007481_2 2.3|370137|29|NZ_CP007481|CRT 370137-370165 29 NZ_CP007481.1 369807-369835 0 1.0
NZ_CP007481_3 3.1|418047|30|NZ_CP007481|PILER-CR 418047-418076 30 NZ_CP007481.1 417942-417971 0 1.0
NZ_CP007481_3 3.2|418098|33|NZ_CP007481|PILER-CR 418098-418130 33 NZ_CP007481.1 417993-418025 0 1.0
NZ_CP007481_3 3.2|418098|33|NZ_CP007481|PILER-CR 418098-418130 33 NZ_CP007481.1 418308-418340 0 1.0
NZ_CP007481_3 3.3|418152|30|NZ_CP007481|PILER-CR 418152-418181 30 NZ_CP007481.1 417942-417971 0 1.0
NZ_CP007481_3 3.4|418203|33|NZ_CP007481|PILER-CR 418203-418235 33 NZ_CP007481.1 417993-418025 0 1.0
NZ_CP007481_3 3.4|418203|33|NZ_CP007481|PILER-CR 418203-418235 33 NZ_CP007481.1 418308-418340 0 1.0
NZ_CP007481_3 3.5|418257|30|NZ_CP007481|PILER-CR 418257-418286 30 NZ_CP007481.1 417942-417971 0 1.0

1. spacer 2.1|369999|29|NZ_CP007481|CRT matches to position: 369744-369772, mismatch: 0, identity: 1.0

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcagctgctggctgctgt	Protospacer
*****************************

2. spacer 2.1|369999|29|NZ_CP007481|CRT matches to position: 369807-369835, mismatch: 0, identity: 1.0

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcagctgctggctgctgt	Protospacer
*****************************

3. spacer 2.2|370062|41|NZ_CP007481|CRT matches to position: 370200-370240, mismatch: 0, identity: 1.0

cttcgatattatccgcgcctgtgttatcatcagaaccttgc	CRISPR spacer
cttcgatattatccgcgcctgtgttatcatcagaaccttgc	Protospacer
*****************************************

4. spacer 2.3|370137|29|NZ_CP007481|CRT matches to position: 369744-369772, mismatch: 0, identity: 1.0

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcagctgctggctgctgt	Protospacer
*****************************

5. spacer 2.3|370137|29|NZ_CP007481|CRT matches to position: 369807-369835, mismatch: 0, identity: 1.0

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcagctgctggctgctgt	Protospacer
*****************************

6. spacer 3.1|418047|30|NZ_CP007481|PILER-CR matches to position: 417942-417971, mismatch: 0, identity: 1.0

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
cactgaagtacaagacgaagtcaaactaaa	Protospacer
******************************

7. spacer 3.2|418098|33|NZ_CP007481|PILER-CR matches to position: 417993-418025, mismatch: 0, identity: 1.0

atcgggaattgtagatggagaaatttcaacagg	CRISPR spacer
atcgggaattgtagatggagaaatttcaacagg	Protospacer
*********************************

8. spacer 3.2|418098|33|NZ_CP007481|PILER-CR matches to position: 418308-418340, mismatch: 0, identity: 1.0

atcgggaattgtagatggagaaatttcaacagg	CRISPR spacer
atcgggaattgtagatggagaaatttcaacagg	Protospacer
*********************************

9. spacer 3.3|418152|30|NZ_CP007481|PILER-CR matches to position: 417942-417971, mismatch: 0, identity: 1.0

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
cactgaagtacaagacgaagtcaaactaaa	Protospacer
******************************

10. spacer 3.4|418203|33|NZ_CP007481|PILER-CR matches to position: 417993-418025, mismatch: 0, identity: 1.0

atcgggaattgtagatggagaaatttcaacagg	CRISPR spacer
atcgggaattgtagatggagaaatttcaacagg	Protospacer
*********************************

11. spacer 3.4|418203|33|NZ_CP007481|PILER-CR matches to position: 418308-418340, mismatch: 0, identity: 1.0

atcgggaattgtagatggagaaatttcaacagg	CRISPR spacer
atcgggaattgtagatggagaaatttcaacagg	Protospacer
*********************************

12. spacer 3.5|418257|30|NZ_CP007481|PILER-CR matches to position: 417942-417971, mismatch: 0, identity: 1.0

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
cactgaagtacaagacgaagtcaaactaaa	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007481_2 2.1|369999|29|NZ_CP007481|CRT 369999-370027 29 NZ_CP034185 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence 333043-333071 5 0.828
NZ_CP007481_2 2.3|370137|29|NZ_CP007481|CRT 370137-370165 29 NZ_CP034185 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence 333043-333071 5 0.828
NZ_CP007481_2 2.1|369999|29|NZ_CP007481|CRT 369999-370027 29 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 216432-216460 6 0.793
NZ_CP007481_2 2.3|370137|29|NZ_CP007481|CRT 370137-370165 29 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 216432-216460 6 0.793
NZ_CP007481_2 2.1|369999|29|NZ_CP007481|CRT 369999-370027 29 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 80181-80209 7 0.759
NZ_CP007481_2 2.3|370137|29|NZ_CP007481|CRT 370137-370165 29 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 80181-80209 7 0.759
NZ_CP007481_3 3.1|418047|30|NZ_CP007481|PILER-CR 418047-418076 30 NZ_CP013052 Sinorhizobium americanum CCGM7 plasmid A, complete sequence 136995-137024 8 0.733
NZ_CP007481_3 3.3|418152|30|NZ_CP007481|PILER-CR 418152-418181 30 NZ_CP013052 Sinorhizobium americanum CCGM7 plasmid A, complete sequence 136995-137024 8 0.733
NZ_CP007481_3 3.5|418257|30|NZ_CP007481|PILER-CR 418257-418286 30 NZ_CP013052 Sinorhizobium americanum CCGM7 plasmid A, complete sequence 136995-137024 8 0.733

1. spacer 2.1|369999|29|NZ_CP007481|CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcaggtgctcgctgaggg	Protospacer
*************** **** ****  * 

2. spacer 2.3|370137|29|NZ_CP007481|CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctcaggtgctcgctgaggg	Protospacer
*************** **** ****  * 

3. spacer 2.1|369999|29|NZ_CP007481|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 6, identity: 0.793

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctgagctgcgggcttgcga	Protospacer
************ ****** ****  .* 

4. spacer 2.3|370137|29|NZ_CP007481|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 6, identity: 0.793

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgtactggctgagctgcgggcttgcga	Protospacer
************ ****** ****  .* 

5. spacer 2.1|369999|29|NZ_CP007481|CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.759

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgagctggctcagctgctggccgacaa	Protospacer
**** .*****************.* .. 

6. spacer 2.3|370137|29|NZ_CP007481|CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.759

gttgtactggctcagctgctggctgctgt	CRISPR spacer
gttgagctggctcagctgctggccgacaa	Protospacer
**** .*****************.* .. 

7. spacer 3.1|418047|30|NZ_CP007481|PILER-CR matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
gattgacgttcaagacgaagtcaaacgtgg	Protospacer
 *.*** ** ****************  ..

8. spacer 3.3|418152|30|NZ_CP007481|PILER-CR matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
gattgacgttcaagacgaagtcaaacgtgg	Protospacer
 *.*** ** ****************  ..

9. spacer 3.5|418257|30|NZ_CP007481|PILER-CR matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

cactgaagtacaagacgaagtcaaactaaa	CRISPR spacer
gattgacgttcaagacgaagtcaaacgtgg	Protospacer
 *.*** ** ****************  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage