CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015614	Brevundimonas naejangsanensis strain B1 chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015614_1

2816728-2816805

Orphan

Consensus_repeat	Method
GCGCTCAAGCAGCGAGCGACCGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015614_1

>merge|NZ_CP015614|1|2816728-2816805|CRISPRCasFinder
GCGCTCAAGCAGCGAGCGACCGCGTTGCGAGCGATAGCGCCCCTAGAAAGAACGCGCTCAAGCAGCGAGCGATCGCGT

>NZ_CP015614|1|1|2816728-2816805|CRISPRCasFinder
GCGCTCAAGCAGCGAGCGACCGCGT	TGCGAGCGATAGCGCCCCTAGAAAGAAC
GCGCTCAAGCAGCGAGCGATCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015614.1\|WP_064108296.1\|2826890_2827925_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP015614.1\|WP_025978069.1\|2824308_2825472_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|223890
NZ_CP015614.1\|WP_025978059.1\|2811435_2811654_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015614.1\|WP_025978063.1\|2816875_2819068_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236864
NZ_CP015614.1\|WP_025978053.1\|2805852_2806395_-\|GcrA-cell-cycle-regulator	unknown	unknown	gnl\|CDD\|254404
NZ_CP015614.1\|WP_025978055.1\|2807526_2808441_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349868
NZ_CP015614.1\|WP_025978068.1\|2823423_2824011_-\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|308338
NZ_CP015614.1\|WP_025978065.1\|2820531_2821764_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP015614.1\|WP_025978057.1\|2809906_2810824_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_CP015614.1\|WP_025978067.1\|2823103_2823331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015614.1\|WP_025978054.1\|2806630_2807470_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP015614.1\|WP_025978064.1\|2819085_2820291_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236197
NZ_CP015614.1\|WP_025978058.1\|2810868_2811375_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804
NZ_CP015614.1\|WP_082891528.1\|2811982_2814721_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP015614.1\|WP_025978071.1\|2826058_2826883_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP015614.1\|WP_029972642.1\|2825604_2826048_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|226289
NZ_CP015614.1\|WP_025978066.1\|2822279_2822489_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP015614.1\|WP_025978062.1\|2815764_2816580_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370581
NZ_CP015614.1\|WP_025978061.1\|2814841_2815765_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP015614.1\|WP_025978056.1\|2808576_2809752_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|179270

Protein	Function_ID	Function_description	E-value
NZ_CP015614.1\|WP_064108296.1\|2826890_2827925_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.38951e-24
NZ_CP015614.1\|WP_025978069.1\|2824308_2825472_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	1.51709e-173
NZ_CP015614.1\|WP_025978063.1\|2816875_2819068_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	0
NZ_CP015614.1\|WP_025978053.1\|2805852_2806395_-\|GcrA-cell-cycle-regulator	gnl\|CDD\|254404	pfam07750, GcrA, GcrA cell cycle regulator. GcrA is a master cell cycle regulator that, together with CtrA (see pfam00072 and pfam00486), is involved in controlling cell cycle progression and asymmetric polar morphogenesis. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery.	1.02604e-50
NZ_CP015614.1\|WP_025978055.1\|2807526_2808441_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349868	cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases. Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are glutaminyl cyclases (QC), which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases.	1.21562e-25
NZ_CP015614.1\|WP_025978068.1\|2823423_2824011_-\|manganese-efflux-pump	gnl\|CDD\|308338	pfam02659, Mntp, Putative manganese efflux pump. MntP is a family of bacterial proteins with a signal peptide and four transmembrane domains. It is a putative manganese efflux pump, since deletion of the gene leads to profound manganese sensitivity and elevated intracellular manganese levels in bacteria. Manganese is a highly important trace nutrient for organisms from bacteria to humans, and acts as an important element in the defense against oxidative stress and as an enzyme cofactor.	3.21409e-47
NZ_CP015614.1\|WP_025978065.1\|2820531_2821764_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0
NZ_CP015614.1\|WP_025978061.1\|2814841_2815765_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.74493e-25
NZ_CP015614.1\|WP_025978054.1\|2806630_2807470_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	4.40113e-52
NZ_CP015614.1\|WP_025978064.1\|2819085_2820291_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236197	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase.	0
NZ_CP015614.1\|WP_025978058.1\|2810868_2811375_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	6.26128e-53
NZ_CP015614.1\|WP_082891528.1\|2811982_2814721_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	5.21629e-29
NZ_CP015614.1\|WP_025978071.1\|2826058_2826883_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	8.02048e-18
NZ_CP015614.1\|WP_029972642.1\|2825604_2826048_+\|DUF350-domain-containing-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	5.41586e-32
NZ_CP015614.1\|WP_025978066.1\|2822279_2822489_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.14164e-31
NZ_CP015614.1\|WP_025978062.1\|2815764_2816580_+\|hypothetical-protein	gnl\|CDD\|370581	pfam09608, Alph_Pro_TM, Putative transmembrane protein (Alph_Pro_TM). This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.	9.78502e-90
NZ_CP015614.1\|WP_025978057.1\|2809906_2810824_+\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_CP015614.1\|WP_025978056.1\|2808576_2809752_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|179270	PRK01278, argD, acetylornithine transaminase protein; Provisional.	0

>NZ_CP015614.1|WP_025978062.1|2815764_2816580_+|hypothetical-protein
MFQVLPPEPPPQAAPEIIIERSAATTEEVRVAAALTDARVDVDSGFKGASIVLYGAVFNPSATPADVVVVVRGPDAPVRLVKKTRNMGVWLNSRPVLFEGAPGFYMTASTRPLSDIADFGQLRRLGVGVDHLRIDAPEEARTVTRYGVRDVVISRLGEDYLDWRRAVIRLKEAAALYDTDPKGVQFVDRGLFRAEVKLPAVAPTGKYYAEVWLFQEGAAVSVSNLTLTVEKVGLERDIYEFAHRRPWSYGVLCVLLAALTGYAASRVFRSR
>NZ_CP015614.1|WP_025978061.1|2814841_2815765_+|sulfite-exporter-TauE/SafE-family-protein
MDIYLPIAEVSVNWPLLVMLGALVGFVSGLFGIGGGFLMAPVLVFLGIPPTVAVASQASHVVASSTSGVIRYSGMGAVDYRIGGIMAVGGALGALVGVELFRYLRLLGQADLVVSLSYLLFLGSIGGMMLYESLTQILHRVRGETPPRKERRRPMWLYGLPFRMRFPRSGLYISAIPPFGLGVFAGVLSAIMGVGGGFILVPAMLYVLRMRASVVVGTSLFQIIITTAITTVLQAGRNQTVDIVLSTILLLGGVVGAQYGAKLSGRFRAEEMRAALGLIVLLVGIQMGLELFVRPSDLFLLAPGVAD
>NZ_CP015614.1|WP_082891528.1|2811982_2814721_+|hypothetical-protein
MTLGEWLNSMIMDEPEEDDSVATLPRRSPIPDPYDRRSRSRRLDDVYGEDAHRHEGLGRIGASLEVIAERLEAAERRSTLAIQGIDQAVVGLVRRMEAQDEAEAAKARRIDDIAEELREGHRRLRRLEQDAGAEARDGLDKLDAALTAVSTRLYEMDERQRAGVSELRDRIEAIEKAAGPGAGTTLLSQVGVRLDDAQSQTSEALKGLERSFAALDLRMRDAERRIEPDHAREASRFEKLAEALTRQVESSRVEMMRRLDAAETEGRVERIERALAAIGEQARAAEQRSVAAVEGMGHEIMRIARNLNGRVEKVEAAGAGASDARVAALEQKLERDLARHAQAVDQRLTQADDQHALALERLGGEIARISDRLGERIAQSERRSAQALDDIGRRLAESTDKMHQRHERASGELAERMRQSEERTARLLAEARDSIEQRAGRTERRDVPLESSEPAPWTPAESPSGDWRAAAFADPVEPWSQDPLAGAVQAEPFPTQTERHPDDGVFADPFEADFLEPRQDATPFGRAPSELSANPGSIHAPDSFGGADISDILAAFEDPAADVFARPETVAATAADRPLTLDDDDDGFAAELEFVDPAPRATADEGPTTTRDVLDAARAAMAPEAADDGARSGFGLKKRGGKSKLQERLDRQAGRQGSTMRKAIGASAVAALVVGGGYASLQVAEGAGLRFPGVSAPGVAAGSADAEAGLDAPIAAVALDAAPTDAVPSPEAAATEGASLFARASLMLNNGDEAGVEPLTRAANLGHAPAQLRLAMLYQEGQAGLAVDDAEARAWARRAAEGGDAKAMHHYAMQLYDGVGGAKSGPDALIWLKKAAEAGRVDSQYNVAKMLEQGDQGVAANRTEAFKWYMIAARRGDQQALASVQRLTPALSAVERRKAREAADAFTAPPLA
>NZ_CP015614.1|WP_025978059.1|2811435_2811654_-|hypothetical-protein
MDATLTLILLIASLAVVVFAGWRGARPIDLTRGPRMMPWRFIMLLAAALAFYLLIHLMAELSGRPLPAAPAF
>NZ_CP015614.1|WP_025978058.1|2810868_2811375_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTDKELTPAQAEEAFWKSLKSSNTGMLGLDRPGYHSQPMTAFREAETGTIWFFTRDDTDLARDAATPGQTAMFSYGSKDQKVWACIHGALSVHGRDREVIERYWNPVLAAWYPEGKDDPRLTLLRFDAGDGRVWVSDGGLMKFAFEIAKANLTKTPPDAGDVADVNLS
>NZ_CP015614.1|WP_025978057.1|2809906_2810824_+|ornithine-carbamoyltransferase
MVRHFLDIHRLDAATLRAILDDAHARKRARKGWPQGRPDADAPGKDRVLAMVFEKNSTRTRFSFDAAIRQLGGASIIATASDMQLGRGEPVEDTARVLSRMVDAVMIRANDHEDVERFARVSTVPVVNGLTDRSHPCQILADLMTIEEHRGSIEGKTIAWIGDGNNVCHSFMHAAPKFGFHLNVACPAEYHPDLRDLEKGGAHVTLTSDPREAVKGADVVVTDTWVSMGDQDYEARLAAFEPYSVDAALMAEAADDAVFLHCLPAHRGEEVTDAVIDGPQSLIWDEAENRLHAQKAVLAWCFGAF
>NZ_CP015614.1|WP_025978056.1|2808576_2809752_+|aspartate-aminotransferase-family-protein
MGVYNRAPLEVERGQGVRLWSADGTEYLDCVSGISTNALGHANPKLVAALKAQADKLWHVSNIFKIPGQDALADDLCAKSFADVVFFTNSGTEAVECALKTARKFHVANGQPERIDIYGFDGSFHGRTYGAINAAANPSYTEGFGPKMEGFHQLKWGDHDAIKAAIANPTTAAIIVEPVQGEGGCRAMPEQCLRGLRELCDAHGVLIIFDEVQCGMGRTGKLWAHEWAGMAPDIMAIAKALGGGFPIGACLATAEAAKGMTVGAHGSTFGGNPLAMAVGKAAFDEVSSDAILNNVNEVAGYLKQQLHGLAERFPDVIVEVRGKGLLLGVKLVPNNREFMGWARDEAKLLVAGGGDNLVRVLPPLNITLEEAREAVEKFEKACEFARTKVAG
>NZ_CP015614.1|WP_025978055.1|2807526_2808441_+|M20/M25/M40-family-metallo-hydrolase
MSFHLRLKAAVSGAVLAAVCLTAAPSLAQNRAADLREQVGAYAQPSNAERLQVLLRQLRAEGFAPTVETFDGGGRGEPMQGSNVVVTLGEGAKEILLTAHYDAVKLRDGTMADGLVDNAGSVVAVIEAAKILREAPLSHRIRIIFFDQEELGLIGARKWIEAHGLANVAAVVNSDVAAYGDTMMYGQNNGPQSAFVTRAVQELCAEQTLQCVGFPIYPPSDDRAFSAAGAPVVSLGFQDEIGAHQMWLAFNGGKTNGLAEGFVPQVFRLIHSKDDAIEAVEGEAIDLAGRTYAALIRKLDAQLR
>NZ_CP015614.1|WP_025978054.1|2806630_2807470_+|ABC-transporter-permease
MTHLTAGSDAPSAAAGGLPQPRRYDGINWVGLRTLYLKEVRRFWKVGAQTVAAPVVTTLLYMMVFVVALKGARPPLHGTPFAEFVAPGLIMMAILQNAFANASSSLIQAKIMGTATDFLTPPLSPLELTIGFTLGAATRGVAVGLVTAICVMPFAKLGLANIALIVWFGLIASLLMGMMGVLAGLWSEKFDHLSAVQNFVVMPMTFLSGTFYLIDSLPEPFASISKFNPFFYLIDGFRAGFIGHAEGSLMVGVVMSAVLTVIMGAACWLVFRSGWRLKS
>NZ_CP015614.1|WP_025978053.1|2805852_2806395_-|GcrA-cell-cycle-regulator
MNPGWTEDRVGALKKLWLEGQSASQIAKALGGGVTRNAVIGKVHRLGLSGRAAPSQPARTTFRPARPRAAAPAAPVQAPSAPRRLEAVAPRPIVAAAPQSPAPAPAPELPGTATVLTLGAHMCKWPIGDPSTSDFSFCGRRASEGVYCVEHARVAYQPQVRKSASKDASSDLARSLRRYI
>NZ_CP015614.1|WP_025978063.1|2816875_2819068_-|3-hydroxyacyl-CoA-dehydrogenase
MENFKIDIDADGIATVAFDVPGRSMNTLTSAVIAEIPALVEKIKTDDAIKGVVLTSGKTTGFCAGADLGDMASGMLAGGGDLQKAFDTGWALNGAFRALETSGKPVAAAINGLALGGGLEFTLACHYRVVENDPKIQLGLPEIKVGLFPGGGGTQRLTRLIGVQNALMQMAEGKSWRPNDAKGAGVVHEVVEKGQSVEAAKAWIKNGGKAVQPWDDPKFKIPGGGPYHPAGAQVFIMGNAILRKQSYGNYPAVLNMMKAVYEGVQVPIEAGLRIETRYFIKTLMTPQAQAMIRSLFLSKQELDKGAVRPAGVPKSDPKKVSVLGAGMMGAGIAYVQVMAGIETVLIDQTQEAADKGKAHVEELLKKRLSRGQMTQEKFDATLALVTATTDYDLIRGSDLVIEAVFENREIKADVTKRAEAQLAEGAVFGSNTSTLPITGLAEASVRPEDFIGIHFFSPVDKMMLVEIIMGEKTGDAALAKALDYVLKIRKTPIVVNDSRGFYTSRCFSTFLMEGMAMLEEGYSPVLIDNVGRMTGMPRGPLEMHDDVALDLSYKIAKQTREDLGDKYVPNEGEQIVATMVEQGRFGRKNGKGFYDYDSKPKVIWPGLYDLAPTTKGAELGESPEALAAIDELKTRLLYRQAVEVARCWEEGVIDDPREGDLGAILGWGFAPWTGGPITFMDQTGLKAFVAKADELTAKYGDRFKVPQLLRDMAAKDETFYGRFAPQTEAA
>NZ_CP015614.1|WP_025978064.1|2819085_2820291_-|acetyl-CoA-C-acetyltransferase
MADAYIYDAVRTPRGKGKKDGSLHEITALSLASQVLEALRDRNGLDTAKVDDVILGCVSPVGEQGADIARTAVLAAGWDQETAGFQINRFCASGLEAVNVAAAKVKSGEAGMAVGGGVEAMSRVPMGSDGGAWPTDPSSAFPTYFVPQGVSADMIATKYGFSRDDVDAYSVESHKRAARSWAERRFDKSVIAVKNQLGLTQLDRDETIRPNTDMQTLGGLNPSFVMMGGMGFDAVIGQRYPEVASVNHVHTPGNSSGIVDGAAGVLIGTKEMGEALGLKPRAKILGGASIGSEPSIMLTGPEPVTRKLLGKLGMQPGDIDLYELNEAFAAVVLRYMQALDIPHDKINVCGGAIAMGHPLGATGAMILGTVLDELERSDKSTALATLCIGGGMGTATVIERV
>NZ_CP015614.1|WP_025978065.1|2820531_2821764_-|PQQ-dependent-sugar-dehydrogenase
MRPALFAVSAAVLALAACGANGQDEPQTSAATGAPVETRPPNNPDQKPAHEGQTRAPSVSTTAAMQHAVVAEGLEHPWGLALLPDGQWLVTERPGRMRVVSAQGQIGAPISGLPAVAARGQGGLLDVILSPTFAQDRMIYWSYAQPRNGGNGTAVARGRLSDDLSRVENVQVVFQVKDTYDGDKHFGSSLVFGPDGKLYITIGERSDKPMRPTAQSLASHHGKVIRINADGSVPSDNPFVGRDDALPEIWSYGHRNPQGIAVQPETGAVWSIEHGTRGGDELNLEKAGANFGWPGAAYGIEYSGDAIPGATTTKDGTVQPVYYWDPVIAPGGMVFYDGAMFPDWKGNALIGGLGGKHLVRLVLQDGRVVGEERLLTGLGERIRDVAVGPDGAVWVVTDEENGKLVRLARR
>NZ_CP015614.1|WP_025978066.1|2822279_2822489_-|cold-shock-protein
MATGIVKWFNPTKGFGFIAPDAGGGDVFVHISAVERAGLTGLNEGQALSYELEHDQRSGKASAGQLQAA
>NZ_CP015614.1|WP_025978067.1|2823103_2823331_-|hypothetical-protein
MRPPLLLIAVLAAPLALAGCATGRGLPTYQEEMTKLDAECVARGGILTPSGMQTGRPQTDYLCKITGGASRLRQD
>NZ_CP015614.1|WP_025978068.1|2823423_2824011_-|manganese-efflux-pump
MSPFAVAVLSLSMSADAFAAAIGRGAQHRPTVPQALRSGLVFGVVEAITPLVGFALGVAAAGFVEAVDHWIAFGLLGAVGARMIWEALKRDEDAAEATAPVGKAASRGLLALIATAVGTSIDAGAVGVGLALLEANIWLIALCIGFTTFVMASLGLLIGKAAGTRLGRVAELLGGLALIALGSKILLEHLGLLAG
>NZ_CP015614.1|WP_025978069.1|2824308_2825472_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MSITLDLSRASASATTPVNLSGLTRDELRQALIDAGICPPEKARMRASQVWRWIHHYGVTDFALMSDVAKDTRAALAEAFTLARPEIVERQVSKDGTRKWLIRMAPGIEVETVYIPDVGRAGALCVSSQVGCTLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPSPKEDRRLSNIVFMGMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLHATNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKLIEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQLKSESEKLRASARLKAEREAVDAA
>NZ_CP015614.1|WP_029972642.1|2825604_2826048_+|DUF350-domain-containing-protein
METSSLPGVLSTPELQAFATGFPILMLHLAVTFGLLAAGAAVYALLTPWREIALIRQGNPAAAVAFAGVLVGLAIPLAVSLSVSTSIRDIAIWGVATVVLQLLAFRVVDFLLHGLPQRIEKGEVSAAVVLAGAKLSTALILAAALTG
>NZ_CP015614.1|WP_025978071.1|2826058_2826883_+|trypsin-like-peptidase-domain-containing-protein
MRFPHLPDWTIYAAVIGVILIASLSRGERADAPHDQHEDEASGPLLGPITPFDPSVTVDTSDEHEPVSGTAFSIAGDGRWITARHVVEGCRKPALVIDKTRALAADVRLAARADVALLLTDGGPPALPIAPEAPLYKGQRAFHPGFPQGRPGEVASRLIGRETLKIRGHRSYDEPVLAWAEAGRTRGLKGTLSGLSGAPVLDRRGRVLGVTIAESPRRGRIYTTAPDTFVPAVGAQQRADEAALGQAVTTQNYGAVSDRLRQDLRVAQVVCLTT
>NZ_CP015614.1|WP_064108296.1|2826890_2827925_-|sel1-repeat-family-protein
MLKTGYVALLAVGTIWLTCSPVQAHSSALDPLSDALELLRTDPSAAVAALEPLVAAGDPEAAASLASALEFTGGDPERSERLWAQALRDGSQNARLNIGLRRLMNDDPADDAEAIGWLEGLDAKYRPAAAYPLGRAYLFGAGVQQDLKKGTRLIQTAVRADPGNVDAQFLLGRAYQDGWGVPVDVAAAPTHLSLAADSGDPRAQWNLGMLLLDGGAPSELATAYRYVRQAAEQNFESGMISLAVMLAVGQGVAPDPAEARLWYARAAENGSAHALRALGMMILVGEGGASDPVKGAAYVGLAAEGGDANAAILLRQFAKPLSQLPRADIDAAKAKWVKDHGAPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

161893 : 207644

Burkholderia_phage(16.67%)

protease,tail,head,portal,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025977928.1\|161893_163324_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_025977927.1\|163430_164210_-	DUF2807 domain-containing protein	NA	NA	NA	NA
WP_025977926.1\|164232_164799_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_025977925.1\|164795_165227_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_025977924.1\|165502_166462_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_025977923.1\|166485_168132_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	6.0e-08	38.5
WP_082891398.1\|168195_169173_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_025977921.1\|169179_169437_+	hypothetical protein	NA	NA	NA	NA
WP_025977920.1\|169433_169997_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_025977919.1\|170051_170930_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_051582113.1\|170989_171355_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_025977917.1\|171351_172062_+	SURF1 family protein	NA	NA	NA	NA
WP_145915937.1\|172127_173348_+	insulinase family protein	NA	NA	NA	NA
WP_025977915.1\|173404_174007_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_025977914.1\|174017_175685_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_134581546.1\|175699_175903_+	hypothetical protein	NA	NA	NA	NA
WP_025977912.1\|175899_176481_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_025977911.1\|176614_177103_+	peroxiredoxin	M1I839	Pelagibacter_phage	7.9e-25	51.2
WP_029972627.1\|177154_177574_+	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	4.4e-32	54.9
WP_025977909.1\|177570_179505_-	response regulator	A0A1V0SGX0	Hokovirus	1.2e-23	24.5
WP_025977908.1\|179569_180607_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_025977907.1\|180615_180975_-	DUF952 domain-containing protein	NA	NA	NA	NA
WP_025977906.1\|180978_181470_-	histidine phosphatase	NA	NA	NA	NA
WP_025977905.1\|181480_182251_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025977904.1\|182383_183115_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_025977903.1\|183121_184564_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_025977902.1\|184729_185674_+	hypothetical protein	NA	NA	NA	NA
WP_025977901.1\|185670_185979_+	hypothetical protein	NA	NA	NA	NA
WP_145915876.1\|185975_186341_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_025977899.1\|186337_187018_+	DUF799 family lipoprotein	NA	NA	NA	NA
WP_025977898.1\|187145_188138_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.5e-78	52.6
WP_025977897.1\|188172_189387_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_025977896.1\|189552_189975_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.8e-25	52.8
WP_025977895.1\|190054_191173_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_025977894.1\|191169_192351_-	hypothetical protein	NA	NA	NA	NA
WP_025977893.1\|192430_193441_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025977892.1\|194134_194677_-	DsrE family protein	NA	NA	NA	NA
WP_029972621.1\|194717_196583_-	ATP-binding cassette domain-containing protein	A0A2I4R674	Erysipelothrix_phage	4.3e-31	25.1
WP_025977890.1\|196688_197297_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_025977889.1\|197293_197632_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_003169096.1\|197775_198255_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_025977888.1\|198298_200722_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	7.3e-47	32.4
WP_167349621.1\|201147_202437_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.4e-68	39.6
WP_025977885.1\|202522_203170_+	IPTL-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_025977884.1\|203248_204415_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.8e-67	39.1
WP_025977883.1\|204414_204639_+	hypothetical protein	NA	NA	NA	NA
WP_029972618.1\|204635_205079_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	9.0e-20	41.8
WP_029972616.1\|205086_205491_-	hypothetical protein	NA	NA	NA	NA
WP_025977880.1\|205627_206872_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	3.0e-76	43.0
WP_025977879.1\|207063_207330_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_025977878.1\|207341_207644_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA

DBSCAN-SWA_2

210733 : 220004

Roseobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025977872.1\|210733_211345_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.8e-42	44.0
WP_025977871.1\|211348_212002_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	4.0e-24	34.9
WP_082891506.1\|212109_212658_+	peptidase P60	F4YXU4	Roseobacter_phage	3.3e-32	50.0
WP_025977869.1\|212661_216339_+	hypothetical protein	A0A0K1LLC1	Rhodobacter_phage	1.1e-192	37.5
WP_025977868.1\|216461_217394_+	J domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	9.4e-19	29.7
WP_025977867.1\|217444_218617_+	phosphoserine transaminase	NA	NA	NA	NA
WP_025977866.1\|218708_220004_+	adenylosuccinate synthase	A0A0B5J049	Pandoravirus	1.2e-59	33.7

DBSCAN-SWA_3

1476169 : 1484342

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025976676.1\|1476169_1477054_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.3e-21	32.2
WP_025976675.1\|1477086_1477938_-	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	9.6e-10	28.2
WP_025976674.1\|1477934_1478420_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	8.9e-37	49.1
WP_025976673.1\|1478474_1479278_-	class IV aminotransferase	NA	NA	NA	NA
WP_025976672.1\|1479284_1482059_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.1e-98	32.9
WP_025976671.1\|1482182_1482794_+	superoxide dismutase family protein	A0A2P1EL36	Moumouvirus	6.4e-08	31.7
WP_051582061.1\|1482800_1483757_-	EamA family transporter	NA	NA	NA	NA
WP_025976669.1\|1483847_1484342_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	2.5e-47	66.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage