CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007509	Pseudomonas stutzeri strain 19SMN4, complete genome	0 crisprs	DEDDh,csa3,cas3,WYL,csx1,DinG,RT	0	0	5	0
NZ_CP007510	Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid	0 crisprs	c2c9_V-U4	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2565386 : 2579283

uncultured_Caudovirales_phage(75.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038660536.1\|2565386_2566055_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-87	77.1
WP_038660539.1\|2566164_2567433_-	MFS transporter	NA	NA	NA	NA
WP_038660542.1\|2567660_2568053_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.0e-48	72.1
WP_038660545.1\|2568052_2568412_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.4e-33	61.7
WP_038660547.1\|2568411_2568714_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.0e-19	52.0
WP_038660550.1\|2568710_2569046_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.1e-41	73.9
WP_038660553.1\|2569042_2570026_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.4e-142	75.2
WP_038660556.1\|2570108_2571125_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_038660559.1\|2571244_2573845_-	PAS domain-containing protein	A0A2K9L5I4	Tupanvirus	5.7e-13	28.0
WP_038660562.1\|2573813_2574977_-	GfdT protein	NA	NA	NA	NA
WP_038660565.1\|2575304_2576492_-	porin	NA	NA	NA	NA
WP_038660568.1\|2576742_2579283_-	pyrroloquinoline quinone biosynthesis protein PqqF	A0A1V0SJA4	Klosneuvirus	1.3e-14	28.1

DBSCAN-SWA_2

3299579 : 3387723

Pseudomonas_phage(29.73%)

protease,transposase,portal,tail,terminase,integrase,plate,capsid,coat,head,tRNA

attL 3314532:3314559|attR 3368196:3368223

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015277775.1\|3299579_3300404_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	6.9e-106	72.4
WP_038662209.1\|3300538_3301132_+	molecular chaperone DnaJ	NA	NA	NA	NA
WP_038662211.1\|3301271_3301871_+	YIP1 family protein	NA	NA	NA	NA
WP_038662214.1\|3302048_3302750_+	YIP1 family protein	NA	NA	NA	NA
WP_038662217.1\|3302812_3303307_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_038662220.1\|3303323_3304502_-	MFS transporter	NA	NA	NA	NA
WP_015277781.1\|3304702_3304882_+	periplasmic nitrate reductase, NapE protein	NA	NA	NA	NA
WP_038662223.1\|3304942_3305197_+	chaperone NapD	NA	NA	NA	NA
WP_038662226.1\|3305196_3307701_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_038662229.1\|3307712_3308201_+	cytochrome c	NA	NA	NA	NA
WP_038662232.1\|3308211_3308808_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_003302346.1\|3308905_3309472_-	dCTP deaminase	S5VM63	Pseudomonas_phage	3.9e-76	74.9
WP_003282211.1\|3309800_3310010_+	cold-shock protein	Q9AZD3	Lactococcus_phage	6.3e-16	65.0
WP_038662235.1\|3310114_3311209_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_038662238.1\|3311389_3313447_+\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_080695094.1\|3313509_3313722_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_038662241.1\|3313711_3314404_+	pseudouridine synthase	NA	NA	NA	NA
3314532:3314559	attL	NA	NA	NA	NA
WP_080695095.1\|3314983_3317038_+	acyltransferase	A0A193GZ69	Enterobacter_phage	1.1e-70	30.9
WP_038662245.1\|3317117_3317681_-	hypothetical protein	B5TK84	Pseudomonas_phage	1.1e-30	47.0
WP_038662248.1\|3317671_3318310_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	8.3e-75	68.1
WP_051605092.1\|3318388_3318790_-	hypothetical protein	A0A2H4J880	uncultured_Caudovirales_phage	4.6e-07	33.6
WP_155268713.1\|3319660_3320263_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	7.7e-38	45.4
WP_051605094.1\|3320253_3321312_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.1e-66	45.4
WP_051605095.1\|3321304_3321736_-	hypothetical protein	Q8HAB8	Salmonella_phage	6.9e-25	48.8
WP_051605096.1\|3321732_3322257_-	hypothetical protein	Q8SBG6	Shigella_phage	7.2e-16	44.5
WP_051605097.1\|3322256_3323357_-	hypothetical protein	B5TK72	Pseudomonas_phage	3.0e-80	46.7
WP_080695096.1\|3323353_3324736_-	hypothetical protein	M1FPN5	Enterobacteria_phage	3.8e-40	30.8
WP_051605098.1\|3325268_3326945_-	hypothetical protein	R9U4C6	Rhizobium_phage	4.4e-59	42.0
WP_155268714.1\|3326937_3327081_-	hypothetical protein	NA	NA	NA	NA
WP_051605099.1\|3327077_3327389_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_038662256.1\|3327379_3327739_-	hypothetical protein	NA	NA	NA	NA
WP_038662259.1\|3327751_3329239_-	hypothetical protein	Q8W623	Enterobacteria_phage	4.1e-109	46.6
WP_080695097.1\|3329238_3329397_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_038662261.1\|3329400_3329976_-	hypothetical protein	Q8W624	Enterobacteria_phage	4.7e-37	45.1
WP_038662266.1\|3329972_3330446_-	hypothetical protein	NA	NA	NA	NA
WP_038662269.1\|3330442_3330778_-\|head	phage head closure protein	NA	NA	NA	NA
WP_038662273.1\|3330779_3331331_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_038662277.1\|3331334_3331595_-	hypothetical protein	NA	NA	NA	NA
WP_038662280.1\|3331648_3332965_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	3.3e-118	52.8
WP_038662284.1\|3333030_3333978_-	S49 family peptidase	A4JX00	Burkholderia_virus	5.5e-91	55.2
WP_038662286.1\|3333974_3335246_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	1.6e-138	58.5
WP_038662289.1\|3335417_3337241_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.8e-113	39.5
WP_038662293.1\|3337203_3337728_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_038662298.1\|3338201_3338540_-	hypothetical protein	B5TK61	Pseudomonas_phage	7.4e-14	43.1
WP_155268715.1\|3338854_3339346_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.1e-13	36.7
WP_107320815.1\|3339492_3340714_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-111	71.3
WP_155268716.1\|3340716_3340995_-	hypothetical protein	NA	NA	NA	NA
WP_080695098.1\|3340991_3343712_-	hypothetical protein	A0A2H4JF22	uncultured_Caudovirales_phage	3.6e-236	75.3
WP_038662303.1\|3343689_3343911_-	hypothetical protein	H2BDI2	Pseudomonas_virus	3.0e-08	46.0
WP_038662306.1\|3343903_3344395_-	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	6.5e-19	44.1
WP_080695099.1\|3345113_3345848_+	LexA family transcriptional regulator	A0A0H5BBV1	Pseudomonas_phage	1.8e-65	62.4
WP_038662309.1\|3345877_3346084_+	carbon storage regulator	NA	NA	NA	NA
WP_051605101.1\|3346156_3347140_+	hypothetical protein	Q8LTB7	Lactobacillus_phage	1.6e-32	29.5
WP_038662311.1\|3347281_3347539_+	DUF1654 domain-containing protein	A0A0H5ARP1	Pseudomonas_phage	1.7e-18	59.8
WP_038662313.1\|3347633_3347828_+	hypothetical protein	NA	NA	NA	NA
WP_038662315.1\|3347824_3348367_+	hypothetical protein	NA	NA	NA	NA
WP_051605102.1\|3348377_3348653_+	hypothetical protein	NA	NA	NA	NA
WP_080695100.1\|3348813_3349308_+	hypothetical protein	A0A2H4J8B4	uncultured_Caudovirales_phage	5.5e-10	43.4
WP_038662321.1\|3349549_3350053_+	hypothetical protein	NA	NA	NA	NA
WP_038662324.1\|3350060_3351653_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	4.7e-143	54.3
WP_038662327.1\|3351649_3352114_+	hypothetical protein	NA	NA	NA	NA
WP_038662330.1\|3352110_3352422_+	hypothetical protein	NA	NA	NA	NA
WP_038662333.1\|3352408_3352609_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_038662336.1\|3352612_3353812_-\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	4.7e-39	31.3
WP_155268731.1\|3354112_3354655_-	hypothetical protein	NA	NA	NA	NA
WP_003302338.1\|3354828_3355119_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038662341.1\|3355124_3355439_-	toxin HigB-2	NA	NA	NA	NA
WP_038662345.1\|3355483_3356509_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	3.3e-89	50.3
WP_038662348.1\|3356490_3357768_-	hypothetical protein	Q56VN8	Pseudomonas_phage	1.3e-135	56.8
WP_038662351.1\|3357915_3359100_-	zonular occludens toxin	Q6UAZ2	Ralstonia_phage	2.2e-36	31.3
WP_038662353.1\|3359112_3359439_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_038665873.1\|3359438_3359756_-	hypothetical protein	NA	NA	NA	NA
WP_038662356.1\|3360964_3361174_-\|coat	bacteriophage coat protein B	NA	NA	NA	NA
WP_015277797.1\|3361184_3361400_-	hypothetical protein	NA	NA	NA	NA
WP_008567547.1\|3361396_3361576_-	hypothetical protein	NA	NA	NA	NA
WP_051605140.1\|3361591_3361936_-	hypothetical protein	NA	NA	NA	NA
WP_038662367.1\|3363011_3363185_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_014819553.1\|3363327_3363543_-	hypothetical protein	NA	NA	NA	NA
WP_038662371.1\|3363669_3363939_+	hypothetical protein	NA	NA	NA	NA
WP_080695104.1\|3364020_3365637_+	RNA-directed DNA polymerase	Q2P9X6	Enterobacteria_phage	4.5e-16	36.2
WP_038662373.1\|3365693_3366404_+	hypothetical protein	NA	NA	NA	NA
WP_038662376.1\|3367462_3367792_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_038662380.1\|3367788_3368025_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_038662383.1\|3368327_3369116_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
3368196:3368223	attR	NA	NA	NA	NA
WP_038662386.1\|3369331_3370537_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_038662389.1\|3370533_3371331_-	CoA-transferase subunit beta	NA	NA	NA	NA
WP_038662391.1\|3371330_3372188_-	CoA transferase subunit A	NA	NA	NA	NA
WP_038662394.1\|3372415_3373258_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038662397.1\|3373463_3374279_+	DUF1206 domain-containing protein	NA	NA	NA	NA
WP_038662400.1\|3374381_3375866_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_038662403.1\|3376076_3378098_-	TonB-dependent receptor	NA	NA	NA	NA
WP_038662406.1\|3378325_3378550_+	DUF3203 family protein	NA	NA	NA	NA
WP_038662408.1\|3378673_3380158_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_038662410.1\|3380483_3383645_-	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_038662413.1\|3383908_3384664_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038662416.1\|3384789_3387177_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.3e-136	38.3
WP_038662418.1\|3387321_3387723_+\|protease	protease inhibitor I42 family protein	NA	NA	NA	NA

DBSCAN-SWA_3

3609381 : 3665836

Bodo_saltans_virus(10.0%)

integrase,tRNA,transposase,protease

attL 3600619:3600636|attR 3662411:3662428

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3600619:3600636	attL	NA	NA	NA	NA
WP_038662986.1\|3609381_3610299_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_003280893.1\|3610301_3610691_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_038662990.1\|3610793_3613295_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	4.9e-22	23.3
WP_038662993.1\|3613323_3614805_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_038662996.1\|3614852_3615311_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_051605105.1\|3615704_3616088_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_038663002.1\|3616092_3616848_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_038663004.1\|3616913_3618251_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_038663008.1\|3618261_3619113_-	dihydropteroate synthase	NA	NA	NA	NA
WP_038663009.1\|3619281_3621192_-\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	1.7e-115	48.3
WP_038663012.1\|3621681_3621993_+	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_038663015.1\|3622026_3622458_-	hypothetical protein	NA	NA	NA	NA
WP_015275879.1\|3622435_3622912_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_038663019.1\|3622908_3626130_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_038663022.1\|3626166_3627315_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA
WP_038663025.1\|3627531_3628338_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_038663028.1\|3628414_3629545_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.3e-25	40.3
WP_038663031.1\|3629667_3631581_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.5e-148	48.4
WP_038663033.1\|3631680_3632250_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_038663036.1\|3632452_3634126_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003280866.1\|3634183_3634588_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_038663039.1\|3634683_3635199_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_038663042.1\|3635240_3635567_-	RnfH family protein	NA	NA	NA	NA
WP_014819218.1\|3635559_3635994_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003299438.1\|3636201_3636684_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.4e-28	46.7
WP_038663046.1\|3636755_3637541_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_038663049.1\|3637808_3639503_+	L-lactate permease	NA	NA	NA	NA
WP_038663051.1\|3639752_3640574_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_038663053.1\|3640570_3642031_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_038663056.1\|3642027_3642699_+	lactate utilization protein B/C	NA	NA	NA	NA
WP_038663059.1\|3642695_3645548_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_038663061.1\|3645729_3646035_+	hypothetical protein	NA	NA	NA	NA
WP_026006482.1\|3646644_3649086_+\|integrase	site-specific integrase	A0A059XK29	uncultured_phage	1.7e-11	26.5
WP_011914403.1\|3649248_3650508_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_017243953.1\|3651603_3651969_+	DNA binding protein	NA	NA	NA	NA
WP_011914412.1\|3653363_3653795_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	1.8e-09	40.4
WP_011914413.1\|3653877_3654591_+	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.6e-55	46.2
WP_038663076.1\|3654923_3655730_+	hypothetical protein	NA	NA	NA	NA
WP_014818820.1\|3656021_3657392_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_017246267.1\|3657733_3658294_-	hypothetical protein	NA	NA	NA	NA
WP_116620521.1\|3658775_3659929_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.9e-48	44.8
WP_017246265.1\|3660210_3660573_-	DUF3703 domain-containing protein	NA	NA	NA	NA
WP_017246264.1\|3660589_3662872_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.2e-145	47.3
3662411:3662428	attR	NA	NA	NA	NA
WP_017246263.1\|3663107_3663560_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_017246261.1\|3663825_3664287_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_014818820.1\|3664465_3665836_+\|transposase	IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

4148248 : 4209244

Enterobacteria_phage(12.5%)

protease,tRNA,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038664061.1\|4148248_4148500_-\|portal	portal protein	NA	NA	NA	NA
WP_038664064.1\|4148499_4148991_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_038664067.1\|4149255_4150932_+	carbon starvation protein A	NA	NA	NA	NA
WP_013981518.1\|4150928_4151195_+	hypothetical protein	NA	NA	NA	NA
WP_038664071.1\|4151185_4152193_+	ArsA family ATPase	NA	NA	NA	NA
WP_038664074.1\|4152187_4152616_-	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_080695114.1\|4152730_4153384_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_038665983.1\|4153380_4154049_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_038664077.1\|4154269_4155352_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038664081.1\|4155338_4157696_+	EAL domain-containing protein	NA	NA	NA	NA
WP_038664084.1\|4157883_4158363_+	hypothetical protein	NA	NA	NA	NA
WP_038664087.1\|4158403_4159231_-	oxidoreductase	NA	NA	NA	NA
WP_038664090.1\|4159227_4160238_-	hypothetical protein	NA	NA	NA	NA
WP_038664093.1\|4160224_4162321_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_038664095.1\|4162367_4162895_-	hypothetical protein	NA	NA	NA	NA
WP_015278560.1\|4163071_4163746_-	DUF1028 domain-containing protein	NA	NA	NA	NA
WP_038664099.1\|4163813_4164152_-	cytochrome c	NA	NA	NA	NA
WP_038664102.1\|4164206_4165475_-	sorbosone dehydrogenase	NA	NA	NA	NA
WP_038664106.1\|4165627_4166086_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.2e-37	49.7
WP_038664109.1\|4166149_4167538_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_038664112.1\|4167530_4169012_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_015278566.1\|4169161_4169554_+	DUF4168 domain-containing protein	NA	NA	NA	NA
WP_038664115.1\|4169859_4170756_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_051605112.1\|4170972_4171362_-	hypothetical protein	NA	NA	NA	NA
WP_038664117.1\|4171470_4172145_-	hypothetical protein	NA	NA	NA	NA
WP_038664120.1\|4172838_4173069_-	hypothetical protein	NA	NA	NA	NA
WP_038664122.1\|4173165_4173468_+\|transposase	transposase	A0A1P8CWP5	Bacillus_phage	6.6e-06	37.1
WP_038664125.1\|4173464_4174328_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-55	43.4
WP_146031062.1\|4174386_4174704_-	hypothetical protein	NA	NA	NA	NA
WP_080695115.1\|4174700_4180133_-	hypothetical protein	NA	NA	NA	NA
WP_038661402.1\|4180186_4181215_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.6e-46	36.2
WP_051605115.1\|4181252_4185656_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	3.0e-30	36.1
WP_038664128.1\|4185738_4187457_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_038664131.1\|4187765_4188209_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_038664133.1\|4188295_4189021_-	response regulator	NA	NA	NA	NA
WP_038665995.1\|4189017_4190622_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_038664136.1\|4190867_4192181_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_038664138.1\|4192258_4193896_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-20	33.1
WP_038664141.1\|4194434_4196255_-	translational GTPase TypA	NA	NA	NA	NA
WP_038664144.1\|4196422_4197877_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_038664147.1\|4198216_4199623_+	glutamate--ammonia ligase	NA	NA	NA	NA
WP_038664150.1\|4199787_4200342_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_038664153.1\|4200344_4200971_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_038664155.1\|4201140_4202223_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	8.2e-06	22.6
WP_038664158.1\|4202219_4203656_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_038664161.1\|4203742_4204192_-	hypothetical protein	NA	NA	NA	NA
WP_038664164.1\|4204190_4204673_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_038664167.1\|4204763_4207136_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_038664170.1\|4207273_4207810_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_038664172.1\|4207900_4209244_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	6.5e-45	28.5

DBSCAN-SWA_5

4610788 : 4622556

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038664999.1\|4610788_4613530_+	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	2.2e-23	32.2
WP_038665002.1\|4613531_4614659_+	ABC transporter permease	NA	NA	NA	NA
WP_080695123.1\|4614655_4615651_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.0e-18	37.4
WP_038665005.1\|4615831_4616902_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.8e-99	53.3
WP_038665008.1\|4616898_4617771_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	64.2
WP_038665011.1\|4617767_4618313_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.6e-53	59.0
WP_038665015.1\|4618309_4619224_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.4e-27	33.7
WP_038665018.1\|4619359_4621165_+	sensor histidine kinase	NA	NA	NA	NA
WP_038665021.1\|4621161_4622556_+	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.5e-09	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP007510

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46124 : 94981

Micromonas_sp._RCC1109_virus(20.0%)

integrase,transposase

attL 64258:64274|attR 95436:95452

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107320815.1\|46124_47347_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-111	71.3
WP_040138039.1\|47927_48110_-	hypothetical protein	NA	NA	NA	NA
WP_040138149.1\|48219_48927_-	DNA repair protein	NA	NA	NA	NA
WP_040138041.1\|48982_49207_-	hypothetical protein	NA	NA	NA	NA
WP_040138043.1\|49209_49509_-	hypothetical protein	NA	NA	NA	NA
WP_155268737.1\|49591_49915_+	hypothetical protein	NA	NA	NA	NA
WP_014819639.1\|50929_51916_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_009399901.1\|52059_52374_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_080695149.1\|52443_53793_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_014819637.1\|53808_54390_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_014819636.1\|54459_55239_+	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	NA	NA	NA	NA
WP_040138050.1\|55286_56738_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_040138052.1\|56765_57674_+	naphthalene 1,2-dioxygenase	NA	NA	NA	NA
WP_003292061.1\|58080_59085_+	trans-o-hydroxybenzylidenepyruvate hydratase-aldolase	NA	NA	NA	NA
WP_003292062.1\|59343_60012_+	DsbA family protein	NA	NA	NA	NA
WP_080583056.1\|60078_60201_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_040138055.1\|60496_61897_+	aromatic hydrocarbon degradation protein	NA	NA	NA	NA
WP_040138059.1\|62761_64150_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.6e-84	39.1
WP_141653283.1\|64079_64322_-	hypothetical protein	NA	NA	NA	NA
64258:64274	attL	NA	NA	NA	NA
WP_080583088.1\|64341_64698_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_003292069.1\|64935_65064_-	hypothetical protein	A0A1B2LRQ3	Wolbachia_phage	8.6e-08	64.3
WP_003292084.1\|66449_67868_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_014819624.1\|67867_68848_-\|transposase	IS5-like element ISAch1 family transposase	A0A077K814	Ralstonia_phage	8.0e-93	57.9
WP_003292087.1\|69521_70424_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009397177.1\|70579_71893_+	salicylate 1-monooxygenase	NA	NA	NA	NA
WP_003292091.1\|72335_72674_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_003292092.1\|72670_73594_+	catechol 2,3-dioxygenase	NA	NA	NA	NA
WP_003292094.1\|73628_75089_+	2-hydroxymuconic semialdehyde dehydrogenase	NA	NA	NA	NA
WP_003292095.1\|75099_75948_+	alpha/beta fold hydrolase	A0A023W6C9	Mycobacterium_phage	1.5e-10	37.4
WP_003292096.1\|75959_76745_+	2-oxopent-4-enoate hydratase	NA	NA	NA	NA
WP_003292099.1\|76759_77683_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	5.8e-37	37.4
WP_009397183.1\|77694_78735_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	2.4e-47	36.7
WP_009397184.1\|78731_79526_+	2-oxo-3-hexenedioate decarboxylase	NA	NA	NA	NA
WP_009397185.1\|79574_79766_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_003292104.1\|79796_80237_+	heme-binding protein	NA	NA	NA	NA
WP_040138069.1\|81072_82503_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_155268741.1\|83523_83748_-	hypothetical protein	NA	NA	NA	NA
WP_040138075.1\|84284_84689_-	hypothetical protein	NA	NA	NA	NA
WP_019406671.1\|84681_84981_-	hypothetical protein	NA	NA	NA	NA
WP_040138078.1\|85042_86548_-	ATP-dependent helicase	A0A2I7R5Z1	Vibrio_phage	1.3e-46	31.4
WP_040138080.1\|86989_87286_-	hypothetical protein	NA	NA	NA	NA
WP_040138082.1\|87302_87563_-	hypothetical protein	NA	NA	NA	NA
WP_040138084.1\|87599_88088_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_040138086.1\|88191_88539_-	type II toxin-antitoxin system ChpB family toxin	NA	NA	NA	NA
WP_040138156.1\|88535_88790_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_040138088.1\|88863_89541_-\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	5.4e-08	27.4
WP_040138091.1\|89650_89869_-	hypothetical protein	NA	NA	NA	NA
WP_040138094.1\|89984_91283_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_040138096.1\|91492_91840_+	hypothetical protein	NA	NA	NA	NA
WP_040138097.1\|91844_92165_+	hypothetical protein	NA	NA	NA	NA
WP_040138098.1\|92339_93437_+	AAA family ATPase	E2ELL2	Clostridium_phage	4.0e-08	30.6
WP_051605154.1\|93462_94476_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_040138099.1\|94645_94981_+\|transposase	transposase	NA	NA	NA	NA
95436:95452	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007509

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007510

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection