CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007604	Helicobacter pylori strain BM013A chromosome, complete genome	4 crisprs	cas3,cas2,c2c9_V-U4,DEDDh	0	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007604_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007604_1

337628-337749

Orphan

Consensus_repeat	Method
GAAGAAATCATTTCAAAAAAACAAGAAGAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007604_1

>merge|NZ_CP007604|1|337628-337749|CRISPRCasFinder
GAAGAAATCATTTCAAAAAAACAAGAAGAATTACAGAGCAAAGAAACCCCAGAGGGTAAGCATGATGGAGAGAGACTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACTAGAAGAATT

>NZ_CP007604|1|1|337628-337749|CRISPRCasFinder
GAAGAAATCATTTCAAAAAAACAAGAAGAATT	ACAGAGCAAAGAAACCCCAGAGGGTAAGCATGATGGAGAGAGACTCTCTAGCGTTACT
GAAGAAATCATTTCAAAAAAACTAGAAGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007604.1\|WP_038417338.1\|343686_345303_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007604.1\|WP_038417326.1\|335241_335646_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP007604.1\|WP_001019051.1\|333401_334208_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP007604.1\|WP_000051414.1\|334204_334438_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NZ_CP007604.1\|WP_049821993.1\|337833_338112_+\|lysozyme	unknown	unknown	gnl\|CDD\|381597
NZ_CP007604.1\|WP_038417323.1\|331354_332137_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP007604.1\|WP_038417321.1\|329944_330487_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP007604.1\|WP_000201850.1\|347992_349024_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP007604.1\|WP_038417335.1\|341231_342128_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP007604.1\|WP_038417339.1\|345559_346228_+\|membrane-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP007604.1\|WP_038417341.1\|346271_347975_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NZ_CP007604.1\|WP_038417331.1\|338762_339149_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|225863
NZ_CP007604.1\|WP_038417322.1\|330419_331358_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP007604.1\|WP_080279611.1\|349010_349790_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NZ_CP007604.1\|WP_038417324.1\|332385_333378_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP007604.1\|WP_038417336.1\|342127_343678_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP007604.1\|WP_038417327.1\|335920_336781_+\|cysteine-rich-Sel1-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP007604.1\|WP_038417325.1\|334444_335245_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NZ_CP007604.1\|WP_038417328.1\|336894_337233_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_080279610.1\|339330_340098_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007604.1\|WP_038417338.1\|343686_345303_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007604.1\|WP_038417326.1\|335241_335646_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	4.59941e-36
NZ_CP007604.1\|WP_000051414.1\|334204_334438_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	1.07135e-25
NZ_CP007604.1\|WP_049821993.1\|337833_338112_+\|lysozyme	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	1.39693e-09
NZ_CP007604.1\|WP_038417323.1\|331354_332137_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	2.28304e-126
NZ_CP007604.1\|WP_038417321.1\|329944_330487_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	1.42174e-59
NZ_CP007604.1\|WP_000201850.1\|347992_349024_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	4.84925e-165
NZ_CP007604.1\|WP_038417335.1\|341231_342128_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.37666e-68
NZ_CP007604.1\|WP_038417339.1\|345559_346228_+\|membrane-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	7.46883e-13
NZ_CP007604.1\|WP_038417327.1\|335920_336781_+\|cysteine-rich-Sel1-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.08874e-24
NZ_CP007604.1\|WP_038417331.1\|338762_339149_+\|DUF1294-domain-containing-protein	gnl\|CDD\|225863	COG3326, COG3326, Predicted membrane protein [Function unknown].	1.52707e-28
NZ_CP007604.1\|WP_038417322.1\|330419_331358_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	1.04772e-89
NZ_CP007604.1\|WP_080279611.1\|349010_349790_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	6.02299e-64
NZ_CP007604.1\|WP_038417324.1\|332385_333378_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	2.48041e-180
NZ_CP007604.1\|WP_038417336.1\|342127_343678_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP007604.1\|WP_001019051.1\|333401_334208_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.32077e-151
NZ_CP007604.1\|WP_038417325.1\|334444_335245_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	8.72388e-94
NZ_CP007604.1\|WP_038417341.1\|346271_347975_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0

>NZ_CP007604.1|WP_038417328.1|336894_337233_+|hypothetical-protein
MKIMHQVKDFLDFCKQTIQKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGENEQEK
>NZ_CP007604.1|WP_038417327.1|335920_336781_+|cysteine-rich-Sel1-repeat-protein
MAEPTPKELFDQGKEIFDFAVSGGGGAFRGDSLEAKKYYIQAKEYFEKACNLNYAKGCVSLGGLYEGENLVIGENPRLKERLKKAIQYYSKACDLKDGEGCFNLGYIYELNGYGVVKKDLKKAAQYYSKACELDYDGGCVIFLARKDGELANKQEVFQYLSKACELNSGVGCFVLGGLYHDREDLKKAIQYCSKACDLNDKFGCSRLGAMQYIGKGVVKNEKQAAEKFEKACKLGKQEACEMVTYKGLCELGHKEACEIFSLEVLCESSDQKACGMSYDKQKALGF
>NZ_CP007604.1|WP_038417326.1|335241_335646_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYDNLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
>NZ_CP007604.1|WP_038417325.1|334444_335245_+|DNA-protecting-protein-DprA
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPTTIMFSPCSLDFVYPTNNYKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NZ_CP007604.1|WP_000051414.1|334204_334438_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK
>NZ_CP007604.1|WP_001019051.1|333401_334208_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
>NZ_CP007604.1|WP_038417324.1|332385_333378_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKVRIGLYQGSLSVSKAKKEGFEVLGVKELVQQSDVIMVLLPDELHKEVLEKEVIPFLKEGQIIGFAHGFSVHFNQVVIPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLLKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHKK
>NZ_CP007604.1|WP_038417323.1|331354_332137_-|NAD+-synthase
MQKDYQKLIAYLCDFLEKEVQKKGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESKTDALNLCEKFSIPYTEYSIAPYDKIFGSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFKNKPIDAEALTQLGYDRALIKNIISRIQKNAFKLELPTIAKRFNPK
>NZ_CP007604.1|WP_038417322.1|330419_331358_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTFLQKGLIFALYPFSLIYQGIATLKRKMAKKHDFKIPLISVGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNALLKPKVPPYYPFCLPSGLYRENIKSYKEAHLVVTEDKDYQRITSISHPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHAPFDLELLEKEFYQNNATSLLVTSKDLVKLQDCKLPLSVLDLRLEICPKVLEEIDRYIFSYPCNTKERL
>NZ_CP007604.1|WP_038417321.1|329944_330487_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYGNTQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPSHRYFLFKEESVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGETILKALECIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKEFIDVLLYYKDKKKYNDQSLLKL
>NZ_CP007604.1|WP_049821993.1|337833_338112_+|lysozyme
MDLEGFSPSIYTDKTEHPTIGYGYNLSVYSYEGKRITKAYGLLTDILKENHKALLSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFSNSSRP
>NZ_CP007604.1|WP_038417331.1|338762_339149_+|DUF1294-domain-containing-protein
MEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKLKFKYGVSLICLIESAILYFVSKDLFWIVALTIFSLSLILVAFKIFLLKDNPNKRFKNNKRDKR
>NZ_CP007604.1|WP_080279610.1|339330_340098_+|hypothetical-protein
MILGTSVIVGVLLGLWRWTYDKSCFSLVFVLLILGIVAYSYISLKMHQRKCFAKCFVNSESFLSKMLHSPIMVSCFYYIFSIFTSISIAYSVLDYNWMMWGIVFCAIVVCAAVFGVFEKMLKSIIKEDYLMLMSREVSAFVGALFFIGLSRYVIYHGNMPDYLRPALIDTIKAASDSAYSNCDYTSYVLEFKKMLEGVTWWGMHKAESMGLNKGFMVAGWVAFIIYNALSGIAISRLSAQIIYWLSKYFRGEYGK
>NZ_CP007604.1|WP_038417335.1|341231_342128_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFLVRDVLKCSLKEAQRHLDKQRLKQNQQAVRKSQIIQGVVRLIYFKPNEKQEKLVFEAKDFGAFDKPAQVYTHPKGYFYHESLLDCIQSHLGKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVEKTYLALAHGLVDKSIIIDKPILTPQNIQKDLRIRSQISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVGHRIVGEGLYGVADENAREYLQLKRENNAPLLMLHAASLEFEFKGAIYQIASPMPERFMPFLKDLPLFY
>NZ_CP007604.1|WP_038417336.1|342127_343678_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERLASIAYNEKGFPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDEIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCETEPPLTLTLKDIDRELLEIIETGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIYFNTERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
>NZ_CP007604.1|WP_038417338.1|343686_345303_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIEKERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKKKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTDLEGVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKF
>NZ_CP007604.1|WP_038417339.1|345559_346228_+|membrane-protein
MAENSFKNVSTHPKAFFLLPVKTLFLLGGVFSAFFILIAGLVFFDHAHLMDNAIFNFARSTPFNSSPILILILQNTARLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVILFEALLESLKHLLAHSIQWLSRSANFPSAIALSLTLFYGLLVLLIPHLITNQIFQNILSYSLLGLIFLIGLVLIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NZ_CP007604.1|WP_038417341.1|346271_347975_+|flagellar-M-ring-protein-FliF
MDLKILLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSRDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGTNALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSDGAKG
>NZ_CP007604.1|WP_000201850.1|347992_349024_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NZ_CP007604.1|WP_080279611.1|349010_349790_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNSASLETSNHPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV

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Crispr_ID: NZ_CP007604_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007604_2

339197-339327

Orphan

Consensus_repeat	Method
GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007604_2

>merge|NZ_CP007604|2|339197-339327|CRISPRCasFinder
GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTTTGAAATCATTTTTGACGCAATCCCGATCGTGCTTACACCTATCGCGATCGCACTAGTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT

>NZ_CP007604|2|2|339197-339327|CRISPRCasFinder
GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT	TGAAATCATTTTTGACGCAATCCCGATCGTGCTTACACCTATCGCGATCGCACTA
GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007604.1\|WP_038417329.1\|337216_337777_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_038417338.1\|343686_345303_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007604.1\|WP_038418938.1\|349792_351643_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|129308
NZ_CP007604.1\|WP_000051414.1\|334204_334438_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NZ_CP007604.1\|WP_049821993.1\|337833_338112_+\|lysozyme	unknown	unknown	gnl\|CDD\|381597
NZ_CP007604.1\|WP_038417326.1\|335241_335646_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP007604.1\|WP_000201850.1\|347992_349024_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP007604.1\|WP_038417335.1\|341231_342128_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP007604.1\|WP_038417339.1\|345559_346228_+\|membrane-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP007604.1\|WP_038417341.1\|346271_347975_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NZ_CP007604.1\|WP_038418403.1\|351657_353448_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP007604.1\|WP_038417331.1\|338762_339149_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|225863
NZ_CP007604.1\|WP_038417327.1\|335920_336781_+\|cysteine-rich-Sel1-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP007604.1\|WP_080279611.1\|349010_349790_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NZ_CP007604.1\|WP_038417324.1\|332385_333378_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP007604.1\|WP_038417336.1\|342127_343678_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP007604.1\|WP_001019051.1\|333401_334208_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP007604.1\|WP_038417325.1\|334444_335245_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NZ_CP007604.1\|WP_038417328.1\|336894_337233_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_080279610.1\|339330_340098_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007604.1\|WP_038417338.1\|343686_345303_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007604.1\|WP_038418938.1\|349792_351643_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|129308	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	0
NZ_CP007604.1\|WP_000051414.1\|334204_334438_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	1.07135e-25
NZ_CP007604.1\|WP_049821993.1\|337833_338112_+\|lysozyme	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	1.39693e-09
NZ_CP007604.1\|WP_038417326.1\|335241_335646_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	4.59941e-36
NZ_CP007604.1\|WP_000201850.1\|347992_349024_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	4.84925e-165
NZ_CP007604.1\|WP_038417335.1\|341231_342128_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.37666e-68
NZ_CP007604.1\|WP_038417339.1\|345559_346228_+\|membrane-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	7.46883e-13
NZ_CP007604.1\|WP_038418403.1\|351657_353448_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP007604.1\|WP_038417331.1\|338762_339149_+\|DUF1294-domain-containing-protein	gnl\|CDD\|225863	COG3326, COG3326, Predicted membrane protein [Function unknown].	1.52707e-28
NZ_CP007604.1\|WP_038417327.1\|335920_336781_+\|cysteine-rich-Sel1-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.08874e-24
NZ_CP007604.1\|WP_080279611.1\|349010_349790_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	6.02299e-64
NZ_CP007604.1\|WP_038417324.1\|332385_333378_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	2.48041e-180
NZ_CP007604.1\|WP_038417336.1\|342127_343678_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP007604.1\|WP_001019051.1\|333401_334208_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.32077e-151
NZ_CP007604.1\|WP_038417325.1\|334444_335245_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	8.72388e-94
NZ_CP007604.1\|WP_038417341.1\|346271_347975_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0

>NZ_CP007604.1|WP_038417331.1|338762_339149_+|DUF1294-domain-containing-protein
MEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKLKFKYGVSLICLIESAILYFVSKDLFWIVALTIFSLSLILVAFKIFLLKDNPNKRFKNNKRDKR
>NZ_CP007604.1|WP_049821993.1|337833_338112_+|lysozyme
MDLEGFSPSIYTDKTEHPTIGYGYNLSVYSYEGKRITKAYGLLTDILKENHKALLSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFSNSSRP
>NZ_CP007604.1|WP_038417329.1|337216_337777_+|hypothetical-protein
MSKKNSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIWVYSDVRQFLLDTSSSFIWLLIALLIKWGVIVISARKCYQFSQKMFAIIQRKRQIRENLKNRSNYKDTKNAGKLSNIAEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNKGS
>NZ_CP007604.1|WP_038417328.1|336894_337233_+|hypothetical-protein
MKIMHQVKDFLDFCKQTIQKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGENEQEK
>NZ_CP007604.1|WP_038417327.1|335920_336781_+|cysteine-rich-Sel1-repeat-protein
MAEPTPKELFDQGKEIFDFAVSGGGGAFRGDSLEAKKYYIQAKEYFEKACNLNYAKGCVSLGGLYEGENLVIGENPRLKERLKKAIQYYSKACDLKDGEGCFNLGYIYELNGYGVVKKDLKKAAQYYSKACELDYDGGCVIFLARKDGELANKQEVFQYLSKACELNSGVGCFVLGGLYHDREDLKKAIQYCSKACDLNDKFGCSRLGAMQYIGKGVVKNEKQAAEKFEKACKLGKQEACEMVTYKGLCELGHKEACEIFSLEVLCESSDQKACGMSYDKQKALGF
>NZ_CP007604.1|WP_038417326.1|335241_335646_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYDNLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
>NZ_CP007604.1|WP_038417325.1|334444_335245_+|DNA-protecting-protein-DprA
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPTTIMFSPCSLDFVYPTNNYKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NZ_CP007604.1|WP_000051414.1|334204_334438_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK
>NZ_CP007604.1|WP_001019051.1|333401_334208_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
>NZ_CP007604.1|WP_038417324.1|332385_333378_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKVRIGLYQGSLSVSKAKKEGFEVLGVKELVQQSDVIMVLLPDELHKEVLEKEVIPFLKEGQIIGFAHGFSVHFNQVVIPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLLKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHKK
>NZ_CP007604.1|WP_080279610.1|339330_340098_+|hypothetical-protein
MILGTSVIVGVLLGLWRWTYDKSCFSLVFVLLILGIVAYSYISLKMHQRKCFAKCFVNSESFLSKMLHSPIMVSCFYYIFSIFTSISIAYSVLDYNWMMWGIVFCAIVVCAAVFGVFEKMLKSIIKEDYLMLMSREVSAFVGALFFIGLSRYVIYHGNMPDYLRPALIDTIKAASDSAYSNCDYTSYVLEFKKMLEGVTWWGMHKAESMGLNKGFMVAGWVAFIIYNALSGIAISRLSAQIIYWLSKYFRGEYGK
>NZ_CP007604.1|WP_038417335.1|341231_342128_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFLVRDVLKCSLKEAQRHLDKQRLKQNQQAVRKSQIIQGVVRLIYFKPNEKQEKLVFEAKDFGAFDKPAQVYTHPKGYFYHESLLDCIQSHLGKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVEKTYLALAHGLVDKSIIIDKPILTPQNIQKDLRIRSQISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVGHRIVGEGLYGVADENAREYLQLKRENNAPLLMLHAASLEFEFKGAIYQIASPMPERFMPFLKDLPLFY
>NZ_CP007604.1|WP_038417336.1|342127_343678_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERLASIAYNEKGFPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDEIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCETEPPLTLTLKDIDRELLEIIETGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIYFNTERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
>NZ_CP007604.1|WP_038417338.1|343686_345303_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIEKERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKKKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTDLEGVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKF
>NZ_CP007604.1|WP_038417339.1|345559_346228_+|membrane-protein
MAENSFKNVSTHPKAFFLLPVKTLFLLGGVFSAFFILIAGLVFFDHAHLMDNAIFNFARSTPFNSSPILILILQNTARLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVILFEALLESLKHLLAHSIQWLSRSANFPSAIALSLTLFYGLLVLLIPHLITNQIFQNILSYSLLGLIFLIGLVLIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NZ_CP007604.1|WP_038417341.1|346271_347975_+|flagellar-M-ring-protein-FliF
MDLKILLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSRDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGTNALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSDGAKG
>NZ_CP007604.1|WP_000201850.1|347992_349024_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NZ_CP007604.1|WP_080279611.1|349010_349790_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNSASLETSNHPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV
>NZ_CP007604.1|WP_038418938.1|349792_351643_+|1-deoxy-D-xylulose-5-phosphate-synthase
MQNRTFDLNPNDIAGLELVCQTLRSRILEVVSTNGGHLSSSLGAVELIVSMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESAYDYFIAGHSSTSVSIGVGVAKAFCLKQALGMPIALLGDGSISAGIFYEALNELGDRKYPMIMILNDNEMSISTPIGALSKALSQLMKGPFYQSFRSKVKKILSTLPESVNYLASRFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSGFVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVASAILEFLSEQNILKPVKSFEITDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER
>NZ_CP007604.1|WP_038418403.1|351657_353448_+|elongation-factor-4
MKNIRNFSIIAHIDHGKSTLADCLISECNAISNREMTSQVMDTMDIEKERGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKDLLEKIITTIPAPSGDFNAALKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKRHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYVQNPSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEKGRALVEMMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVELPQEAFLAILKID

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Crispr_ID: NZ_CP007604_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007604_3

853272-853368

Orphan

Consensus_repeat	Method
AATTTTACCTTTTTACACATTCTAGCCAAAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007604_3

>merge|NZ_CP007604|3|853272-853368|CRISPRCasFinder
AATTTTACCTTTTTACACATTCTAGCCAAAATTTTCAGTAAGAGAGGCTTTTTAAGCTTTTCAAATTTTACCTTTTTACACATTCTAGCCCAAAATT

>NZ_CP007604|3|3|853272-853368|CRISPRCasFinder
AATTTTACCTTTTTACACATTCTAGCCAAAATTT	TCAGTAAGAGAGGCTTTTTAAGCTTTTCA
AATTTTACCTTTTTACACATTCTAGCCCAAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007604.1\|WP_038417763.1\|853548_857490_+\|vacuolating-cytotoxin-autotransporter	unknown	unknown	gnl\|CDD\|111576
NZ_CP007604.1\|WP_038417767.1\|860911_861178_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|379750
NZ_CP007604.1\|WP_038417764.1\|857547_858315_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP007604.1\|WP_038417759.1\|847890_848442_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|129193
NZ_CP007604.1\|WP_038417755.1\|840118_841645_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP007604.1\|WP_038417769.1\|864768_865881_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP007604.1\|WP_038417765.1\|859287_860142_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP007604.1\|WP_187288308.1\|864380_864818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_000921461.1\|858314_859295_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP007604.1\|WP_038418962.1\|851865_853263_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP007604.1\|WP_000335439.1\|865898_866135_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_CP007604.1\|WP_038417754.1\|839091_839967_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_038417761.1\|850404_851865_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|367301
NZ_CP007604.1\|WP_038417760.1\|848467_850312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_001221149.1\|844344_844818_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|366907
NZ_CP007604.1\|WP_038418454.1\|846883_847759_-\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|152468
NZ_CP007604.1\|WP_038417768.1\|861164_861536_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_000646773.1\|844948_845674_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
NZ_CP007604.1\|WP_001135628.1\|860281_860806_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP007604.1\|WP_038417756.1\|841968_844344_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808

Protein	Function_ID	Function_description	E-value
NZ_CP007604.1\|WP_038417763.1\|853548_857490_+\|vacuolating-cytotoxin-autotransporter	gnl\|CDD\|111576	pfam02691, VacA, Vacuolating cyotoxin. This family consists of Vacuolating cyotoxin proteins form Proteobacteria. These proteins are an important virulence determinate in H. pylori and induce cytoplasmic vacuolation in a variety of mammalian cell lines.	0
NZ_CP007604.1\|WP_038417767.1\|860911_861178_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	4.74053e-34
NZ_CP007604.1\|WP_038417764.1\|857547_858315_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	7.15511e-101
NZ_CP007604.1\|WP_038417759.1\|847890_848442_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|129193	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair].	2.9721e-66
NZ_CP007604.1\|WP_038417755.1\|840118_841645_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP007604.1\|WP_038417769.1\|864768_865881_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP007604.1\|WP_000921461.1\|858314_859295_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.59229e-66
NZ_CP007604.1\|WP_038418962.1\|851865_853263_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP007604.1\|WP_000335439.1\|865898_866135_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	3.25163e-31
NZ_CP007604.1\|WP_038417761.1\|850404_851865_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|367301	pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologs of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.	3.63997e-115
NZ_CP007604.1\|WP_038417765.1\|859287_860142_-\|SDR-family-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.96062e-90
NZ_CP007604.1\|WP_001221149.1\|844344_844818_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|366907	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC. This entry includes endodeoxyribonucleases found in bacteria, such as RuvC. RuvC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli RuvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices. The Escherichia coli RuvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination. RuvC protein (EC:3.1.22.4) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo.	2.86066e-81
NZ_CP007604.1\|WP_038418454.1\|846883_847759_-\|DUF3519-domain-containing-protein	gnl\|CDD\|152468	pfam12033, DUF3519, Protein of unknown function (DUF3519). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 117 to 1154 amino acids in length. This protein has a single completely conserved residue Q that may be functionally important.	2.99936e-22
NZ_CP007604.1\|WP_000646773.1\|844948_845674_+\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	1.58169e-27
NZ_CP007604.1\|WP_001135628.1\|860281_860806_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	3.85654e-63
NZ_CP007604.1\|WP_038417756.1\|841968_844344_+\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.32395e-45

>NZ_CP007604.1|WP_038418962.1|851865_853263_+|cysteine--tRNA-ligase
MFIYDTKLKQKVPFEPLVQKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVMLVRNFTDIDDKIINKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSVEFGRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCAFGVELAKYWMHNGFVNINNEKMSKSLGNSFFIKDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLNHKIALMDTPQGTIWEKLF
>NZ_CP007604.1|WP_038417761.1|850404_851865_+|murein-biosynthesis-integral-membrane-protein-MurJ
MLKKIFLTNSLGILCSRIFGFLRDLMMANILGAGVYSDIFFVAFKLPNLFRRIFAEGSFSQSFLPSFIRSSIKGSFASLVGLIFCIVLFMWCLLVALNPLWLTKLLAYGFDEETIKLCAPIVAINFWYLLLVFITTFLGTLLQYKHSFFASAYSASLLNLCMILALLISKEKTHLEALYYLSYGVLLGGVAQILLHFYPLVKLGLLNLLFKGLLSFKTKNAAKKKYRSKRAKKDLKAFFKQFLPSVLGNSSAQIASFLDTTIASFLASGSVSYLYYANRVFQLPLALFAIAISSALFPSIAIAIKNNQKDLILQRLQKAWFFLVGVLLFCSIGGIMLSKEITELLFERGQFSPKDTLITSQVFSLYLLGLLPFGLTKLFSLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLLGVLGLALANSLSGLFLFVLTIKAFGFQLFLGIIKNLKSWLVIFFLACVEILLLLAFKSWVTHLYLFYYFQGF
>NZ_CP007604.1|WP_038417760.1|848467_850312_-|hypothetical-protein
MSLERFAPIKVERCKDIQKELKKAAAENKLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQTHDIKIKSNVYKRFFEVEVDEDLSKIEIILDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHFSQMYENLKTELRKYKKEAQNKRFILYASLTFIPNTEEQSHFLLEEEYLPTHTIFLSDQEESFVKENDYIAKENQKVACVNYPKQGRDGRNLKGLYIELPKVAHSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIEVPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASVINIKGNVGKNVILVAKEITIEGQIHPESYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKIAKQKLNALGLKSKKIIAQHQSLNHLVKNHQTIMEKLKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG
>NZ_CP007604.1|WP_038417759.1|847890_848442_-|Holliday-junction-branch-migration-protein-RuvA
MIVGLIGVVEKISALEAYIEVQGVVYGVQVSMRTAALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENKPARNEVFLALESLGFKSAEINQVLKTLKPNISIEAAIKEALQQLRS
>NZ_CP007604.1|WP_038418454.1|846883_847759_-|DUF3519-domain-containing-protein
MQKSHFSNNTLKIIEELNNGVKQASEEIKEKARDFSNEKLTNEQIKELLNNAEIPTSGRDAITFGTNNLNPEIVEFLHKNNKKMIIEKASNKELELLTDANFKHPENIRASLDHDAIAHILKRHGVNSVNVKNGEIPVTNEDIANYRYIVNNADAILRTLDKYDKEAITAFKQINGYAVVVEQAINKKNELALKTMYKNNGSYKNNEVYKEFSSTSLDADAKVCHRLSSYSGATENNTQKDLTDQEDLLKNTENLNETTPKPTHLSPLEQANAEKHELTLKTMQKMHKTKL
>NZ_CP007604.1|WP_000646773.1|844948_845674_+|NYN-domain-containing-protein
MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNWA
>NZ_CP007604.1|WP_001221149.1|844344_844818_-|crossover-junction-endodeoxyribonuclease-RuvC
MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLKPH
>NZ_CP007604.1|WP_038417756.1|841968_844344_+|TonB-dependent-receptor
MFLRSYPKLRYALCLPLLTETCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRSAYKSAHFDIIAYYTHQNIFYYRSGTTAMKNLFHPTQADKEPGTPSEQNNALIKMNGYLSDRDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSSQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRLDFTLYTSIRNAQFDPLFDPNGVYARFPTSQASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRNLFLNNTGLNLKVAHVIDEATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQTACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPHKIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLNQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMADSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYGVSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW
>NZ_CP007604.1|WP_038417755.1|840118_841645_-|catalase
MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHDMHGKDMHHMKKKK
>NZ_CP007604.1|WP_038417754.1|839091_839967_-|twin-arginine-translocation-signal-domain-containing-protein
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHASLFIPMPSVVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHDMPKRQKALEGKENLPKRESLPWFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNASRVEVYLKDSFLAFDFQNNHKEVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
>NZ_CP007604.1|WP_038417763.1|853548_857490_+|vacuolating-cytotoxin-autotransporter
MEIQQTHRKINRPIISLALVGVLMGTELGANTPNDPIHSESRAFFTTVIIPAIVGGIATGAAVGTVSGLLSWGLKQAEQANKAPDKPDKVWRIQAGRGFDNFPHKQYDLYKSLLSSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVNFDAKNILIDNFVEINNRVGSGAGRKASSTVLTLKSSEKITSRENAEISLYDGATLNLVSSSNQSVDLYGKVWMGRLQYVGAYLAPSYSTINTSKVQGEMNFRHLAVGDRNAAQAGIIANKKTNIGVLDLWQSAGLSIITPPEGGYESKTKDTPSQNNPKNDTQKTEIQPTQVIDGPFAGAKDTVVNIFRLNTNADGTIRAGGFKASLSTNAAHLHIGEGGVNLSNQASGRTLLVENLTGNITVEGTLRVNNQVGGAAVAGSSANFEFKAGEDTNNATATFNNDIHLGKAVNLRVDAHTAYFNGNVYLGKSTNLRVNGHSAHFKNIDATKSDNGLNTSALDFSGVTDKVNINKLTTSATNVNIKNFDIKELVVTTRVQSFGQYTIFDGNIGDKSRIGVVSLQTGYSPAYSGGVTFKSGKKLVIDEIYHAPWNYFDARNVTDVEVNKRILFGAPGNIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATLNAGHQASMIFNNVVDSATGFYKPLIKINNAQNLTKNKEHVLVKARNIDYNLVGVQGTSYDNISASNTNLQEQFKERLALYNNNNRMDICVVRKDNLNDIKACGMAIGNQSMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLGNNSAPTSSESNTTNLPTNTTNKARFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSGDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAQRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNNGSNASLYGTSAGVDAYLNGQVEAIVGGFGSYGYSSFSNRANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLQDLNQSYNYLAYSATTRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSANQVALKNGASSQHLFNASTNVEARYYYGDTSYFYMNAGVLQEFARFGSNNAASLNTFKVNATRNPLNTHARVMMGGELQLAKEVFLNLGVVYLHNLISNASHFASNLGMRYSF
>NZ_CP007604.1|WP_038417764.1|857547_858315_-|ABC-transporter-ATP-binding-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARYSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDNKLVVYAL
>NZ_CP007604.1|WP_000921461.1|858314_859295_-|iron-ABC-transporter-permease
MLKTYHIALACVILAVVVLLFGGESLSLEEWQEVCLNVKNHFLHNEELSSLSVIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NZ_CP007604.1|WP_038417765.1|859287_860142_-|SDR-family-oxidoreductase
MGVREKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCESVDIDVSDSNALKEVFSNINAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFENENGLYALEVNAAKTFYASVYQKALSAKAVAQKIVFLSMSQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
>NZ_CP007604.1|WP_001135628.1|860281_860806_+|acyl-CoA-thioesterase
MPQIQSSHSSHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKSTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHENI
>NZ_CP007604.1|WP_038417767.1|860911_861178_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MLKIRHHIFFKKDFKKLVKNGFDDSVLKEVILTLRKKEPLPTPFKDHALKGKWKPFRECHIKADILLVYLVKDDELILLRLGSHSELF
>NZ_CP007604.1|WP_038417768.1|861164_861536_-|hypothetical-protein
MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCFGHEIPNIQTQQAMRDALKDENLETIEDFSAWANEVKKEMNAEN
>NZ_CP007604.1|WP_187288308.1|864380_864818_+|hypothetical-protein
MSAFKNLKLQLKRREVINHYVAGILGDLKKGFRYAKIEHQILKIYFTHPSFLKAFKIEEDYYTKNLKAHFLETKKTLEALNYPFDFKIIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFLKLKRACNDNTPRTPPQS
>NZ_CP007604.1|WP_038417769.1|864768_865881_-|hydrogenase-formation-protein-HypD
MSVNHLIAPFRDKQTLLVLSNAIKKLAFKLEKKLVVMEVCGGHTHSIMKYGLLDLMPNNLEFVHGPGCPVCVMPRARLDEAYELAMIKDSIILSLGDMMKVPGSYGSLIQAREKGLDARFLYSPMQALEIAKENPHKKVIYIAIGFETTTPMSASVLLNAKKEKLKNLFFHINHLLVPPSVSAILQDPACRINALLAPSHVSVISGASIYSPLVDRFKLPIIVSGFEPVDILESVLMLLKQALKKEAKLEIQYKRAVSYEGNTKAQALVNACMEVRENFEWRGLGNIKHSALKLKETFASYDAEKVFKEHLSHKTSKENKACKCGEILKGIAKPLDCSLFATTCTPQNPIGSCMVSSEGACAAYYRYKRV
>NZ_CP007604.1|WP_000335439.1|865898_866135_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPSKVIAIKDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE

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Crispr_ID: NZ_CP007604_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007604_4

894384-894582

Orphan

I-B

Consensus_repeat	Method
AGCTTCAATCAAGGGACTTATCACTTTA	CRISPRCasFinder
TTCAATCAAGGGACTTATCACTT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP007604_4

>merge|NZ_CP007604|4|894384-894582|CRISPRCasFinder,PILER-CR
AGCTTCAATCAAGGGACTTATCACTTTAGTAACAGCGCAAGTTCAAGCTTTGGTAATAGTAGCTTCAATCAAGGGACTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAATTTCAATCAAGGCACTTATAATTTTAATGGCAACGCCAGCTTTAATAACGACACTTTCAATCAAGGGACTTATGACTTTA

>NZ_CP007604|4|4|894384-894582|CRISPRCasFinder
AGCTTCAATCAAGGGACTTATCACTTTA	GTAACAGCGCAAGTTCAAGCTTTGGTAATAGT
AGCTTCAATCAAGGGACTTATCACTTTA	ATAGCGCCCAATCCACTTTTGAAAACAGC
AATTTCAATCAAGGCACTTATAATTTTA	ATGGCAACGCCAGCTTTAATAACGAC
ACTTTCAATCAAGGGACTTATGACTTTA

>NZ_CP007604|4|1|894387-894580|PILER-CR
TTCAATCAAGGGACTTATCACTT	TAGTAACAGCGCAAGTTCAAGCTTTGGTAATAGTAGC
TTCAATCAAGGGACTTATCACTT	TAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAATTT	TAATGGCAACGCCAGCTTTAATAACGACACTTTCAA
TCAAGGGACTTATGACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007604.1\|WP_000037493.1\|907296_907956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_000722492.1\|906496_907300_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP007604.1\|WP_038417792.1\|902965_904111_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP007604.1\|WP_038417784.1\|888339_891597_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP007604.1\|WP_038417791.1\|902387_902969_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP007604.1\|WP_038417777.1\|874929_875550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007604.1\|WP_001240230.1\|891695_892388_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP007604.1\|WP_038417794.1\|905030_905573_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP007604.1\|WP_038417797.1\|907957_908560_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP007604.1\|WP_162973124.1\|904079_905030_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP007604.1\|WP_038417781.1\|879539_881093_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP007604.1\|WP_038417780.1\|876685_878722_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP007604.1\|WP_038417778.1\|875530_876682_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP007604.1\|WP_038417795.1\|905588_906500_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP007604.1\|WP_038417787.1\|892531_893530_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP007604.1\|WP_001115881.1\|902018_902225_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP007604.1\|WP_038418458.1\|883497_885042_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP007604.1\|WP_038417790.1\|900863_901958_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP007604.1\|WP_038417782.1\|881114_882710_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP007604.1\|WP_038417783.1\|887903_888335_-\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|376519

Protein	Function_ID	Function_description	E-value
NZ_CP007604.1\|WP_000722492.1\|906496_907300_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.74236e-125
NZ_CP007604.1\|WP_038417792.1\|902965_904111_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	4.43308e-140
NZ_CP007604.1\|WP_038417784.1\|888339_891597_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP007604.1\|WP_038417781.1\|879539_881093_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.71873e-54
NZ_CP007604.1\|WP_001240230.1\|891695_892388_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.36782e-52
NZ_CP007604.1\|WP_038417794.1\|905030_905573_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	7.9882e-107
NZ_CP007604.1\|WP_038417797.1\|907957_908560_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	2.9594e-20
NZ_CP007604.1\|WP_162973124.1\|904079_905030_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP007604.1\|WP_038417791.1\|902387_902969_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.07301e-96
NZ_CP007604.1\|WP_038417780.1\|876685_878722_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.04449e-135
NZ_CP007604.1\|WP_038417778.1\|875530_876682_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.27904e-52
NZ_CP007604.1\|WP_038417795.1\|905588_906500_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.70456e-76
NZ_CP007604.1\|WP_038417787.1\|892531_893530_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	1.1834e-158
NZ_CP007604.1\|WP_001115881.1\|902018_902225_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NZ_CP007604.1\|WP_038418458.1\|883497_885042_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	1.71165e-179
NZ_CP007604.1\|WP_038417790.1\|900863_901958_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.33412e-47
NZ_CP007604.1\|WP_038417782.1\|881114_882710_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.72223e-53
NZ_CP007604.1\|WP_038417783.1\|887903_888335_-\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	8.54198e-06

>NZ_CP007604.1|WP_038417787.1|892531_893530_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPHLEVIGINDPANWEILAYLLEHDSVHGLLFKEARYSNCKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINDLLIEASKGALKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSHRLVDMAQFVYHY
>NZ_CP007604.1|WP_001240230.1|891695_892388_-|Bax-inhibitor-1/YccA-family-protein
MALYDRADSRNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP007604.1|WP_038417784.1|888339_891597_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYNELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELVKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEAIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIVPHFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP007604.1|WP_038417783.1|887903_888335_-|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRVPNAFKNLIRRSAKTTFIYPNSKAIRVIRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESASSKIFRLYKNKKVRIR
>NZ_CP007604.1|WP_038418458.1|883497_885042_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMVMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQLGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP007604.1|WP_038417782.1|881114_882710_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTTNIHQCGATNNGSSGGATAAATTGSGSSPCFQGNLALYNEMVGSIKTLSQNISKNIFQGNNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP007604.1|WP_038417781.1|879539_881093_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTATTSGTNGATGSDGQTYSTQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNSAGINSNQANAVQGRASQLPNALYNAQVTLDKITALNNQVKSMPYLPQFRAGNSRSTNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP007604.1|WP_038417780.1|876685_878722_+|ATP-dependent-helicase
MLETLQLNPEQLKAASALQGYNLVIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNALNATDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKSPEHAPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHILSCISDIGSNTAKDIHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFYSHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP007604.1|WP_038417778.1|875530_876682_+|class-I-SAM-dependent-methyltransferase
MENFLNKWDIKTLGQVFTPKKIVDFMLTLKHNQGSVLEPSVGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIALSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRITNDGLQFLCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNVEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWFEWGRMHHISPKKRIYVNAKTRQKNPFFIHQCPNYDGSILALFPYDQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQRSLENALLPKDFLNLG
>NZ_CP007604.1|WP_038417777.1|874929_875550_+|hypothetical-protein
MIPTQLNEIAEFLKTNPYSLSQPLQDGRLNSSVNEEEILNTIKHFPIQLPKAREWWDFSFEENDIFYPVNIKTTTTKTADNLNGKLGIYYALCGLLPEFNNEIAWEKYFQKLHKDLGTNTDRDYYFLIINKNDPKDIFINSLKGIQTLQPNGNNLPFQCKWDNNREIVQRNFIESKNFILSALAKSVTLRANIYLTFKEFFGEFFE
>NZ_CP007604.1|WP_038417790.1|900863_901958_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQKILFSLPLLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNQIYKLNQVKNEITNMQNTFNYINNALKNNSKLTPTEMQAEQYYLQSTLQNIEKIMMLSGGVASNPKLAQALEKMQEPITNPLEFEENLRNLEAQFTQSQNHMLSSLSSQIAQISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNSQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMGFINNYLINYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NZ_CP007604.1|WP_001115881.1|902018_902225_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP007604.1|WP_038417791.1|902387_902969_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEICEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQRFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP007604.1|WP_038417792.1|902965_904111_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLHIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHKEGLKILQNKTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSLKENLEFFKQKNLSVDSNALKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAAPTGLLDGKKALYAKNLSLEIEKKFQHNLLNGHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP007604.1|WP_162973124.1|904079_905030_+|zinc-metalloprotease-HtpX
MRKEKIMTNFEKIIAQNRIKTNAVLATYCVIFAFIGLLVDAIRINANDLGIALFKLITFQIFPAITIIMFLAAFVIILVCIQNFSSIMLSGDEYKLIDPSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLLLQIVLPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEIDKNSTRSAAYLFNAEMFSTHPSVKNRIQSLRKRVI
>NZ_CP007604.1|WP_038417794.1|905030_905573_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKKTPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSRRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP007604.1|WP_038417795.1|905588_906500_+|polyprenyl-synthetase-family-protein
MSSPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELVKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKNEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEKESGKTTHLDSAKNSFVNLLGLKKASDYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP007604.1|WP_000722492.1|906496_907300_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPFSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP007604.1|WP_000037493.1|907296_907956_+|hypothetical-protein
MSKKHRLAFLGLIVGVFFFFNACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP007604.1|WP_038417797.1|907957_908560_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLRCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQTFIDSFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKVSSVRVHETKNGYAESFLNDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFHKIISDEKQCFFHAKPLHQIP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007604_4	4.3\|894529\|26\|NZ_CP007604\|CRISPRCasFinder	894529-894554	26	NZ_CP022727	Erwinia persicina strain B64 plasmid pEP2, complete sequence	67406-67431	2	0.923
NZ_CP007604_4	4.2\|894472\|29\|NZ_CP007604\|CRISPRCasFinder	894472-894500	29	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23172-23200	5	0.828
NZ_CP007604_4	4.2\|894472\|29\|NZ_CP007604\|CRISPRCasFinder	894472-894500	29	NC_004303	Streptococcus phage O1205, complete genome	23172-23200	5	0.828
NZ_CP007604_4	4.3\|894529\|26\|NZ_CP007604\|CRISPRCasFinder	894529-894554	26	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	116561-116586	5	0.808
NZ_CP007604_4	4.5\|894470\|34\|NZ_CP007604\|PILER-CR	894470-894503	34	MK448589	Streptococcus satellite phage Javan632, complete genome	4589-4622	7	0.794
NZ_CP007604_4	4.5\|894470\|34\|NZ_CP007604\|PILER-CR	894470-894503	34	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23202	9	0.735
NZ_CP007604_4	4.5\|894470\|34\|NZ_CP007604\|PILER-CR	894470-894503	34	NC_004303	Streptococcus phage O1205, complete genome	23169-23202	9	0.735
NZ_CP007604_4	4.6\|894527\|36\|NZ_CP007604\|PILER-CR	894527-894562	36	NZ_CP022727	Erwinia persicina strain B64 plasmid pEP2, complete sequence	67399-67434	10	0.722

1. spacer 4.3|894529|26|NZ_CP007604|CRISPRCasFinder matches to NZ_CP022727 (Erwinia persicina strain B64 plasmid pEP2, complete sequence) position: , mismatch: 2, identity: 0.923

atggcaacgccagctttaataacgac	CRISPR spacer
atggcaacgccagcgttaataccgac	Protospacer
************** ****** ****

2. spacer 4.2|894472|29|NZ_CP007604|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 5, identity: 0.828

atagcgcccaatccacttttgaaaacagc	CRISPR spacer
ttagcgcccaaaacacttttgaaaactga	Protospacer
 **********  ************* *

3. spacer 4.2|894472|29|NZ_CP007604|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 5, identity: 0.828

atagcgcccaatccacttttgaaaacagc	CRISPR spacer
ttagcgcccaaaacacttttgaaaactga	Protospacer
 **********  ************* *

4. spacer 4.3|894529|26|NZ_CP007604|CRISPRCasFinder matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

atggcaacgccagctttaataacgac	CRISPR spacer
ccggcagccccagctttaataacgaa	Protospacer
 .****.* ****************

5. spacer 4.5|894470|34|NZ_CP007604|PILER-CR matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 7, identity: 0.794

taatagcgc-ccaatccacttttgaaaacagcaat	CRISPR spacer
-aaaaccgtaccaatcgccttttgaaaacagcaag	Protospacer
 ** * **. ******  ****************

6. spacer 4.5|894470|34|NZ_CP007604|PILER-CR matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 9, identity: 0.735

taatagcgcccaatccacttttgaaaacagcaat	CRISPR spacer
aattagcgcccaaaacacttttgaaaactgatcc	Protospacer
 * **********  ************* *   .

7. spacer 4.5|894470|34|NZ_CP007604|PILER-CR matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 9, identity: 0.735

taatagcgcccaatccacttttgaaaacagcaat	CRISPR spacer
aattagcgcccaaaacacttttgaaaactgatcc	Protospacer
 * **********  ************* *   .

8. spacer 4.6|894527|36|NZ_CP007604|PILER-CR matches to NZ_CP022727 (Erwinia persicina strain B64 plasmid pEP2, complete sequence) position: , mismatch: 10, identity: 0.722

aattttaatggcaacgccagctttaataacgacact	CRISPR spacer
gacgaagatggcaacgccagcgttaataccgacagc	Protospacer
.*.   .************** ****** ***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1443059 : 1511511

Helicobacter_phage(30.77%)

transposase,tRNA,integrase

attL 1504724:1504783|attR 1512926:1514960

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038418197.1\|1443059_1443620_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_038418198.1\|1443674_1444742_+	LptF/LptG family permease	NA	NA	NA	NA
WP_038418199.1\|1444798_1445800_+	DNA adenine methylase	M1HGA9	Paramecium_bursaria_Chlorella_virus	1.9e-17	26.1
WP_080279684.1\|1445796_1446696_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	E0YIY3	Lactococcus_phage	1.1e-37	33.8
WP_166703992.1\|1448370_1449534_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_000338889.1\|1449715_1450153_+	CopD family copper resistance protein	NA	NA	NA	NA
WP_038418200.1\|1450149_1452516_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.5e-41	26.6
WP_038418201.1\|1452540_1453257_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_038418202.1\|1453238_1454273_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A1V0SE20	Indivirus	1.4e-15	27.1
WP_038418203.1\|1454269_1455496_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_038418204.1\|1455581_1456781_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_038418205.1\|1456790_1458167_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_080279685.1\|1458146_1458935_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_038418206.1\|1458931_1459285_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_038418207.1\|1459268_1459595_+	iron-regulated outer membrane protein FrpB4	NA	NA	NA	NA
WP_038418208.1\|1459763_1462397_+	TonB-dependent receptor	NA	NA	NA	NA
WP_038418209.1\|1462622_1463795_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_038418210.1\|1463890_1465078_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_038418211.1\|1465724_1469489_-	class I SAM-dependent DNA methyltransferase	R4TFP1	Halovirus	3.9e-23	24.9
WP_038418213.1\|1469607_1472520_-	DEAD/DEAH box helicase family protein	Q71TG1	Escherichia_phage	9.7e-70	27.3
WP_080279686.1\|1473490_1474279_+\|integrase	integrase	NA	NA	NA	NA
WP_000571125.1\|1474382_1474862_+	hypothetical protein	NA	NA	NA	NA
WP_000736478.1\|1474858_1475143_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_001177716.1\|1475153_1475417_+	hypothetical protein	NA	NA	NA	NA
WP_038418221.1\|1475428_1475665_+	hypothetical protein	NA	NA	NA	NA
WP_038418222.1\|1475664_1478241_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_038418224.1\|1478370_1479507_+	hypothetical protein	NA	NA	NA	NA
WP_038418226.1\|1479503_1481159_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_038418227.1\|1481155_1482355_+	DNA type IV secretion system protein ComB10	NA	NA	NA	NA
WP_038418228.1\|1482338_1484579_+	collagen-like protein	NA	NA	NA	NA
WP_038418230.1\|1484591_1485569_+	hypothetical protein	NA	NA	NA	NA
WP_038418231.1\|1485585_1485858_+	hypothetical protein	NA	NA	NA	NA
WP_038418233.1\|1485862_1486807_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_038418235.1\|1486803_1487322_+	hypothetical protein	NA	NA	NA	NA
WP_038418236.1\|1487318_1489571_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_038418238.1\|1490583_1492647_+	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.1e-59	29.2
WP_000965788.1\|1492701_1493172_+	hypothetical protein	NA	NA	NA	NA
WP_038418243.1\|1493394_1494060_-	hypothetical protein	NA	NA	NA	NA
WP_038418524.1\|1494037_1494421_-	hypothetical protein	NA	NA	NA	NA
WP_038418245.1\|1494467_1495136_-	ParA family protein	A0A222YXS3	Escherichia_phage	7.7e-23	32.6
WP_000189763.1\|1495771_1495936_+	hypothetical protein	NA	NA	NA	NA
WP_038418246.1\|1495936_1497004_+	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_038418250.1\|1497339_1498617_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	6.2e-239	98.6
WP_001042546.1\|1498591_1499245_-\|transposase	IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	1.5e-116	100.0
WP_080279715.1\|1499494_1501096_+	hypothetical protein	NA	NA	NA	NA
WP_038418987.1\|1501105_1502539_+	hypothetical protein	NA	NA	NA	NA
WP_038418252.1\|1502535_1503786_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_080279688.1\|1503782_1504745_+	hypothetical protein	NA	NA	NA	NA
1504724:1504783	attL	NA	NA	NA	NA
WP_038418250.1\|1504759_1506037_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	6.2e-239	98.6
WP_001042546.1\|1506011_1506665_-\|transposase	IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	1.5e-116	100.0
WP_000593805.1\|1507087_1507816_-	hypothetical protein	NA	NA	NA	NA
WP_038418255.1\|1508049_1509027_+	HipA domain-containing protein	NA	NA	NA	NA
WP_000006537.1\|1509103_1509355_+	hypothetical protein	NA	NA	NA	NA
WP_038418257.1\|1509326_1510130_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_038418259.1\|1510443_1511511_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.3e-07	26.3
1512926:1514960	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007604

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection