CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007605	Helicobacter pylori strain BM012B chromosome, complete genome	4 crisprs	c2c9_V-U4,cas3,DEDDh	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007605_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007605_1

653309-653406

Orphan

Consensus_repeat	Method
TTAAAAACGCTAAAAAGGATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007605_1

>merge|NZ_CP007605|1|653309-653406|CRISPRCasFinder
TTAAAAACGCTAAAAAGGATTTTTTCATTTTTAAAATTATCGCTTGCTTTTGGCAAGCTCTTTGATTGTTGGTTATAAAAAACGCTAAAAAGGATTTT

>NZ_CP007605|1|1|653309-653406|CRISPRCasFinder
TTAAAAACGCTAAAAAGGATTTT	TTCATTTTTAAAATTATCGCTTGCTTTTGGCAAGCTCTTTGATTGTTGGTTA
TAAAAAACGCTAAAAAGGATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007605.1\|WP_023591943.1\|646242_647121_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP007605.1\|WP_023591956.1\|661334_661877_+\|endonuclease	unknown	unknown	gnl\|CDD\|184389
NZ_CP007605.1\|WP_023591946.1\|648771_649881_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NZ_CP007605.1\|WP_023591953.1\|656203_656959_-\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NZ_CP007605.1\|WP_023591950.1\|652859_653114_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023591959.1\|663483_664167_+\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP007605.1\|WP_001885479.1\|645475_645739_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP007605.1\|WP_023600117.1\|659570_661193_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273344
NZ_CP007605.1\|WP_000551229.1\|658957_659578_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|213788
NZ_CP007605.1\|WP_023591944.1\|647133_648015_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200563
NZ_CP007605.1\|WP_038419814.1\|653672_655904_-\|Hop-family-adhesin-BabA	unknown	unknown	gnl\|CDD\|375731
NZ_CP007605.1\|WP_162146321.1\|661885_662623_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_023591947.1\|649974_650337_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023591954.1\|657019_658645_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273085
NZ_CP007605.1\|WP_023591945.1\|648068_648761_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023591949.1\|651304_652450_-\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NZ_CP007605.1\|WP_000508588.1\|658647_658887_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP007605.1\|WP_038419812.1\|645754_646159_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023591958.1\|662752_663466_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP007605.1\|WP_023591948.1\|650336_651299_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597

Protein	Function_ID	Function_description	E-value
NZ_CP007605.1\|WP_023591943.1\|646242_647121_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	6.98884e-89
NZ_CP007605.1\|WP_023591956.1\|661334_661877_+\|endonuclease	gnl\|CDD\|184389	PRK13912, PRK13912, nuclease NucT; Provisional.	4.57917e-96
NZ_CP007605.1\|WP_023591946.1\|648771_649881_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	2.62766e-42
NZ_CP007605.1\|WP_023591953.1\|656203_656959_-\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	1.45419e-138
NZ_CP007605.1\|WP_001885479.1\|645475_645739_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	1.53877e-10
NZ_CP007605.1\|WP_023591958.1\|662752_663466_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.12359e-85
NZ_CP007605.1\|WP_000551229.1\|658957_659578_-\|guanylate-kinase	gnl\|CDD\|213788	TIGR03263, Guanylate_kinase, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	9.65117e-100
NZ_CP007605.1\|WP_023591944.1\|647133_648015_+\|polysaccharide-deacetylase	gnl\|CDD\|200563	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins. This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.	1.32776e-140
NZ_CP007605.1\|WP_038419814.1\|653672_655904_-\|Hop-family-adhesin-BabA	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	6.88072e-70
NZ_CP007605.1\|WP_162146321.1\|661885_662623_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.05518e-51
NZ_CP007605.1\|WP_023591954.1\|657019_658645_-\|arginine--tRNA-ligase	gnl\|CDD\|273085	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP007605.1\|WP_023591949.1\|651304_652450_-\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	1.08131e-21
NZ_CP007605.1\|WP_000508588.1\|658647_658887_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	2.67082e-20
NZ_CP007605.1\|WP_023600117.1\|659570_661193_-\|hypothetical-protein	gnl\|CDD\|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	1.54094e-09
NZ_CP007605.1\|WP_023591959.1\|663483_664167_+\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	3.19847e-119
NZ_CP007605.1\|WP_023591948.1\|650336_651299_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	3.64876e-93

>NZ_CP007605.1|WP_023591950.1|652859_653114_-|hypothetical-protein
MPNSSTKKDYTKYSEKQLVNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCKTRQS
>NZ_CP007605.1|WP_023591949.1|651304_652450_-|YbfB/YjiJ-family-MFS-transporter
MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFGFGATLGSLISGPMAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAKASSWVVFSFGIFQALFSYLFTIFLGDLGYVLIFVICGACLVLSFIVLFPIKMQTAINK
>NZ_CP007605.1|WP_023591948.1|650336_651299_+|GTP-binding-protein
MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLMESLKATLNNYEWRGEILRRIIIETTGLANPAPILWTILSDTFLGAHFEIQSVVACVDALNARTHLTNNEAREQIVFADSVLLTKTDLQNDSAALMKLKERLQSINPSAEIFDKRAIDYESLFSRKNRAHRVILPAKDSHSQGFETLSINFEGAMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSVNGVMHIVYPPKHILKDQNGSHLVFITRHLEREKILNSLKGFKDFLGIKGFETP
>NZ_CP007605.1|WP_023591947.1|649974_650337_+|hypothetical-protein
MCVLCGELISSFHWSDENYGSDENLKEPNALISTNENARERKRARLKRVRLLNQILAFYGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWGKAQKLAKKEMDALDSNLLAFLNQNTQATH
>NZ_CP007605.1|WP_023591946.1|648771_649881_-|site-specific-DNA-methyltransferase
MQDYRTLTLENIYAPDEITDALSLLQSCGIESIVNPSNITLNFDIVDLKMLESTTQNTLVQKTLEELYKIRSFSSQNGKIVFKSFNKAKKVANKKQNAKARLTYESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTNLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNSLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGAGTTTKVAKQLGRHFIGIDISEKYCEVARARLKEVTNLFN
>NZ_CP007605.1|WP_023591945.1|648068_648761_-|hypothetical-protein
MSSIEDIIRVYNSVVKDIDKDAQEQDSRAYGGVIRSAKGKLLEHISEEIVKIAWQNIGAKADRLEINSNKIKIPIKDSYIENIANKQVRAYILERKKDYYYGLSVDKHIFVDNQLVMGIECKAYTENAMLKRILVDFHLLKTLYPNISCYLFQLESQLGGDYSALPETLLGSKPTHSIMSYFESVNLNIVTLLKGERDINQPIHKNFKPLDEQILNKTIKLMENELKVYS
>NZ_CP007605.1|WP_023591944.1|647133_648015_+|polysaccharide-deacetylase
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSIELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK
>NZ_CP007605.1|WP_023591943.1|646242_647121_+|carbon-nitrogen-hydrolase-family-protein
MKAKNPAKRILKTAVIQMQSKPYALNENLQLALNLAKEAHNKGANLIVLPELFDSGYCVNDKDAEFGIDFKAIEHGELKNESLRALNNFAKSNKVHLVACSIEKTNKKLYDSAYIISPKGKIVGKHRKIYLWGDEKSRFRRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLLALQGAEILIYPSAFGKARAYNWDLLSRARALENGCFVCACNHSGEETNAQLKQTLEFAGDSRIIAPNGKIIAQATKLNEVVIAEMDLNEVALQRQKIPYLQDFDTKLTKKGFGKLT
>NZ_CP007605.1|WP_038419812.1|645754_646159_+|hypothetical-protein
MCQIKCLLVLLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGVLLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF
>NZ_CP007605.1|WP_001885479.1|645475_645739_+|AtpZ/AtpI-family-protein
MKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHVSWLFWLGVIWGVLASFLNVYKAYKNMQKDYEELAKDPKYTQNKTK
>NZ_CP007605.1|WP_038419814.1|653672_655904_-|Hop-family-adhesin-BabA
MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYEKLNNLLTRYSTLNTLIKLSADPSAVNAARENLGASAKNLIGDKANSPTYQAVLLAINAAVGFWNVLGYATQCGGNADGQESTSSTTIFNNEPGYRSTSITCSLNGYKPGYYAPMSIENFKKLNEAYQILQTALKNGLPALKENNGTVNVTYTYTCSGEGNNNCSSKATGVSKQDGGTKTETKTIDGKSVTTTISSKVVNSGASSNTSHVSYTEITNKLDGVPNSAQALLAQASTLINTINSACPFFSVTNNSSPNAPKMEPTKGKLCGFTEEISAIQKMITDAQELVNQTSVINNHEQSTPIGNNNGKPFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTINPENLTGNFKNFVTGFLATCNNKSTAGTNGTQGSAPGTVTTQTFASGCAYVGQTITNLENSIAHFGTQEQQIEQAENIADTLVNFKSRYGELGNTYNSITTALSSIPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARPKKKGSDHVAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP007605.1|WP_023591953.1|656203_656959_-|HugZ-family-heme-oxygenase
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPSGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
>NZ_CP007605.1|WP_023591954.1|657019_658645_-|arginine--tRNA-ligase
MHTLIKGVLEEILEEEVIIEYPKDREHGHYATPIAFNLAKVFKKSPLVIAEELALKISAHEKTQGLFDSVVACKGYINFTLSLDLLERFTQKALELKEQFGSQIKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMGSQIRLLGLSVWLAYREHVLKESVTYPEVFYKGEYIIEIAKKANNDLEPSLFKENEETIIEVLSGYAKDLMLLEIKDNLDALGIHFDSYASEKEIFKHKDAVFERLEKANALYEKDSKIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFKQNYTKYINIWGADHHGYIARVKASLEFLGYDSNKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVVDDVGKDALRFIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEVLQTPLTNLNAEEKYLLFSALSLPKAIESSFEEYGLQKMCEYAKTLASEFHRFYNAGKILDTPKAKELLKICLMVSLSLSNAFKLLGIEIKTKISAKD
>NZ_CP007605.1|WP_000508588.1|658647_658887_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQES
>NZ_CP007605.1|WP_000551229.1|658957_659578_-|guanylate-kinase
MHNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
>NZ_CP007605.1|WP_023600117.1|659570_661193_-|hypothetical-protein
MKMILFNQNPMITKLLESVSKKLELPMENFNHYQELSACLKEDPEWILIADDEYLEKLDQADWLELKEIISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEVLKILQKKLGSNINELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQKEKEEVKEEVKETPQEKEKPKDDEIQEGETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIKEETQEEPIKEETQEIKEEKQEKTQDSPSTQELEAMQELVKEIQENSNEDKKEIQENTETPQDVEIPQAQDKETQELEIPKEETQENAETPQDVENQAQEIQDKEIQETQEIQENTETQESAEIPQDVEIPQDVEIPQDVEIPQDVEIPQDVEIPQDVENPQETPQEKETPQTQEKETPKDENTQESVQNLQEKEIQEAQDETPQEDHYESIEDIPEPVMAKAMGEELPFLNEAAAKIPNNENDIKTPKESDIKTPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPNA
>NZ_CP007605.1|WP_023591956.1|661334_661877_+|endonuclease
MLNKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQRDALNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLGSCVGF
>NZ_CP007605.1|WP_162146321.1|661885_662623_-|outer-membrane-beta-barrel-protein
MRTLLKMLVGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSINLMTNIHEVREVTNYQTGYTNIITSVNSVRKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAMWNFFQGSFYQDDISVDIGVFGGIAIAGNSWYIGSKGQELLGITNSRAVDNTSFQFLFNFGLKALFVDEHEFEIGFKFPTINNKYYTTDALKVQMRRVFAFYVGYNYHF
>NZ_CP007605.1|WP_023591958.1|662752_663466_+|flagellar-basal-body-L-ring-protein-FlgH
MKKALYLGAVAFSVAFSMVSANEPKIDFNPPSYVEETPSKEFIPELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPPRLTYNGLDERKKQEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNKKKFAADAMETQMPY
>NZ_CP007605.1|WP_023591959.1|663483_664167_+|pseudaminic-acid-cytidylyltransferase
MRAIAIVLARSSSKRIKNKNIIDFFNKPMLAYPIEAALNSKLFEKVFISSDSMEYVHIAKNYGASFLNLRPKVLADDKATTLEVMAYHMKELELKDEDIACCLYGTSALLQEKHLKNAFETLKENTDYVFTCAPFSASPYRSFSLENGVQMAFKEHFNTRTQDLKTLYHDAGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAKLKYSRLKNACQ

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Crispr_ID: NZ_CP007605_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007605_2

741828-742024

Orphan

Consensus_repeat	Method
TAAGTCCCTTGATTGAAAGCGCTGTT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP007605_2

>merge|NZ_CP007605|2|741828-742024|CRISPRCasFinder
TAAGTCCCTTGATTGAAGGTGTCGTTGTCAAAGCTGGCGTTGCCATTAAAATTATAAGTCCCTTGATTGAAAGCGCTGTTTTCAAAAACAGATTGAGTGCTATTAAAGTTGTAAGTCCCTTGATTGAAAGCGCTGTTAGTGAAGCTTAAGTTAGCGCTGTTACTAAAATTATAAGTCCCTTGATTGAAGTTCGTTTG

>NZ_CP007605|2|2|741828-742024|CRISPRCasFinder
TAAGTCCCTTGATTGAAGGTGTCGTT	GTCAAAGCTGGCGTTGCCATTAAAATTA
TAAGTCCCTTGATTGAAAGCGCTGTT	TTCAAAAACAGATTGAGTGCTATTAAAGTTG
TAAGTCCCTTGATTGAAAGCGCTGTT	AGTGAAGCTTAAGTTAGCGCTGTTACTAAAATTA
TAAGTCCCTTGATTGAAGTTCGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007605.1\|WP_038419849.1\|729580_730492_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP007605.1\|WP_038419873.1\|760865_761453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023592021.1\|727520_728123_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP007605.1\|WP_000426975.1\|730507_731050_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP007605.1\|WP_038419860.1\|744015_744708_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP007605.1\|WP_038419858.1\|742874_743873_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP007605.1\|WP_038419864.1\|748068_748500_+\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP007605.1\|WP_038419872.1\|757670_759692_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP007605.1\|WP_187290428.1\|731050_732001_-\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP007605.1\|WP_023592027.1\|731969_733115_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP007605.1\|WP_038419866.1\|748760_751196_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP007605.1\|WP_001099598.1\|733111_733693_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP007605.1\|WP_023592023.1\|728780_729584_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP007605.1\|WP_038419854.1\|734089_735190_-\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_038419868.1\|751442_752987_+\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP007605.1\|WP_023592022.1\|728124_728784_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_001115875.1\|733820_734027_+\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP007605.1\|WP_023592036.1\|753757_755350_-\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_038419869.1\|755371_756928_-\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_038419862.1\|744806_748064_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
NZ_CP007605.1\|WP_038419849.1\|729580_730492_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.85882e-76
NZ_CP007605.1\|WP_023592021.1\|727520_728123_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	1.29956e-20
NZ_CP007605.1\|WP_038419866.1\|748760_751196_+\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.91818e-41
NZ_CP007605.1\|WP_038419860.1\|744015_744708_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.42602e-52
NZ_CP007605.1\|WP_038419858.1\|742874_743873_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	3.86521e-158
NZ_CP007605.1\|WP_038419864.1\|748068_748500_+\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	6.26064e-06
NZ_CP007605.1\|WP_038419872.1\|757670_759692_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.63224e-134
NZ_CP007605.1\|WP_187290428.1\|731050_732001_-\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP007605.1\|WP_023592027.1\|731969_733115_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	1.74021e-142
NZ_CP007605.1\|WP_001099598.1\|733111_733693_-\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.16127e-98
NZ_CP007605.1\|WP_023592023.1\|728780_729584_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	9.54564e-127
NZ_CP007605.1\|WP_038419854.1\|734089_735190_-\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.9655e-46
NZ_CP007605.1\|WP_038419868.1\|751442_752987_+\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	5.68691e-179
NZ_CP007605.1\|WP_000426975.1\|730507_731050_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	3.29711e-106
NZ_CP007605.1\|WP_001115875.1\|733820_734027_+\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	9.36607e-25
NZ_CP007605.1\|WP_023592036.1\|753757_755350_-\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.02487e-53
NZ_CP007605.1\|WP_038419869.1\|755371_756928_-\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.80492e-53
NZ_CP007605.1\|WP_038419862.1\|744806_748064_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NZ_CP007605.1|WP_038419854.1|734089_735190_-|Hop-family-outer-membrane-protein-HopJ/HopK
MQFQKTLFSLPLLLLSFGIAEENGAYASVGFEYSISHAIQHNDPFSNQERIQIISNAQNKIYKLHQVKNEITSIQNTFNYINNALKNHSKLTPTEIQAEKYYLQSTFENIEKIVTLSGGVSSNPQLVQALEKIQEPTTNPLEFEENLRNLEAQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVTLNVGYKHFFTKKKNQGLRYYLFCDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAQKHSSVGFYAGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRIVAFNVSYVYSF
>NZ_CP007605.1|WP_001115875.1|733820_734027_+|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGEPTNEQKQQLIEGVSDLMVKVLNKNKASVVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP007605.1|WP_001099598.1|733111_733693_-|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP007605.1|WP_023592027.1|731969_733115_-|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGPQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSLKENLEFFKQKNLNINPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP007605.1|WP_187290428.1|731050_732001_-|zinc-metalloprotease-HtpX
MRKEKIMTNFEKIIAQNRIKTNAVLATYCVIFAFIGLLVDVIRINANDLGIALFRLMTFQIFPTITMIMFLVAFVVIVVCIQNFSSIMLSGDGYKLIDTSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWNEANSLIALTSALIERLDKDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIILPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGIDQNSTRSAAYLFNAEMFSTHPSIKNRIQSLSRRVI
>NZ_CP007605.1|WP_000426975.1|730507_731050_-|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP007605.1|WP_038419849.1|729580_730492_-|polyprenyl-synthetase-family-protein
MNNPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKNEELFKWLQAFGLKTGLCFQVLDDIIDVTQDEEESGKTTHLDGAKNSFVNLLGLEKANDYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP007605.1|WP_023592023.1|728780_729584_-|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITISTPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHVSITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP007605.1|WP_023592022.1|728124_728784_-|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRE
>NZ_CP007605.1|WP_023592021.1|727520_728123_-|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDHANMALDFGLMQQEMQVFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAEGYALMFLYYLTKILQKSVFSNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHNHCVSFSQGIQNLWHDKDFFHKIISDEKQCFFHAKPLHQIP
>NZ_CP007605.1|WP_038419858.1|742874_743873_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPDLKVIGINDPANWEILAYLLEHDSAHGLLFKEARYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTIENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP007605.1|WP_038419860.1|744015_744708_+|Bax-inhibitor-1/YccA-family-protein
MALYDRADSRNAYAEDSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP007605.1|WP_038419862.1|744806_748064_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITDTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNFKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDTKKLRGLKNLGFSDARIAAKIKENDNLEVSPFEVELARSNLQIAPHFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVSLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLK
>NZ_CP007605.1|WP_038419864.1|748068_748500_+|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVHAPNAFKNLIRRSAKTTFIYPNSKAVRVVKGRHGDFLKRFKTLYSTSANLTQCTYDKEIASNLADVIVSDERGLFESASSKIFRLYKNKKVRIR
>NZ_CP007605.1|WP_038419866.1|748760_751196_+|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGTFELEAKEEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETRSAGDFIPKGKDYAISGAATFLTNFGDRETVMGAYRNHHFDMLLYYTHQNIFYYRDGDNAMKNLFDPKAENKVTGSPSEQNNVMAKINGYLSDRDTLTLSYNMTRDNANRPLRANFTGAFLPYSCGDFNAFPNDQNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSVRNVQIDPLFKPSDIAAIIPFTPNPKLGEENECVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPAYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEVSYKF
>NZ_CP007605.1|WP_038419868.1|751442_752987_+|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKNDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESILLNFRITYYGARINKGYQAGYFGAPKFNNPNGDFSANYQDRSYMMTNLTLKF
>NZ_CP007605.1|WP_023592036.1|753757_755350_-|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNTNIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTDNIHQCGATNNGSSGSGATTAATTSNSPCFQGNLALYNEMVGSIKTLSQNISKNIFQGNNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNHTNQTYGSGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLANRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP007605.1|WP_038419869.1|755371_756928_-|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTTNGTSSANGATGSDGQTYSTQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQAVYNELTKNTISGSAVNSAGINSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNSVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP007605.1|WP_038419872.1|757670_759692_-|ATP-dependent-helicase
MLETLQLNPEQLKAAKALQGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDNDKKPYTSQHLYALYSLYTNALKQEDFSAWLSTKNPEHAPYAALYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGHFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHVLSCISDIGSNTAKDIHEALMLLGNGDLKSALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPIHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPK
>NZ_CP007605.1|WP_038419873.1|760865_761453_-|hypothetical-protein
MIPTQLNEIAEFLKTNPYHLSQPLQDGRLNSSVNEEEILNTIKHSFPVQLPKAREWWDFSFKENDIFYPVNIKTTTTKTADNLNGKLGIYYALCGLLPEFNNEIAWEKYFQKLHKDLGKNTDRDYYFLIINKNDPKDVFINSLKGIQTLQPNGNNLPFQCKWDNNREIVQRDFDGSKNFILSALAKSVTLRANIY

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Crispr_ID: NZ_CP007605_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007605_3

1335817-1335956

TypeV-U4

Consensus_repeat	Method
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP007605_3

>merge|NZ_CP007605|3|1335817-1335956|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCTCTCTCCATCATGCTTGCCCTCTAGGGTTTCTTTGCTTTGTAATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT

>NZ_CP007605|3|3|1335817-1335956|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	CTCTCCATCATGCTTGCCCTCTAGGGTTTCTTTGCTTTGT
AATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007605.1\|WP_038420164.1\|1335438_1335777_-\|lysozyme	unknown	unknown	gnl\|CDD\|381597
NZ_CP007605.1\|WP_023592491.1\|1346002_1346281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_000201853.1\|1327164_1328196_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP007605.1\|WP_023592475.1\|1330882_1332499_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007605.1\|WP_023591540.1\|1344647_1345907_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP007605.1\|WP_023592492.1\|1346282_1347545_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|226365
NZ_CP007605.1\|WP_023592495.1\|1348588_1349266_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NZ_CP007605.1\|WP_023592477.1\|1334057_1334939_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP007605.1\|WP_023592470.1\|1322740_1324531_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP007605.1\|WP_038420430.1\|1343105_1343969_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NZ_CP007605.1\|WP_023592489.1\|1340939_1341272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_080261104.1\|1336831_1337308_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP007605.1\|WP_023591539.1\|1344019_1344673_+\|IS607-like-element-IS607-family-transposase	unknown	unknown	gnl\|CDD\|239738
NZ_CP007605.1\|WP_038420162.1\|1329960_1330629_-\|membrane-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP007605.1\|WP_023592476.1\|1332507_1334058_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP007605.1\|WP_023592471.1\|1324545_1326396_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|129308
NZ_CP007605.1\|WP_080261103.1\|1326398_1327178_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NZ_CP007605.1\|WP_038420166.1\|1336338_1336644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_038420169.1\|1347617_1348301_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023592473.1\|1328213_1329917_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310

Protein	Function_ID	Function_description	E-value
NZ_CP007605.1\|WP_038420164.1\|1335438_1335777_-\|lysozyme	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	3.78157e-13
NZ_CP007605.1\|WP_000201853.1\|1327164_1328196_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	6.16419e-166
NZ_CP007605.1\|WP_023592475.1\|1330882_1332499_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007605.1\|WP_023592492.1\|1346282_1347545_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|226365	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion].	2.66453e-114
NZ_CP007605.1\|WP_023592495.1\|1348588_1349266_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	1.63818e-62
NZ_CP007605.1\|WP_023592477.1\|1334057_1334939_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.21899e-66
NZ_CP007605.1\|WP_023592470.1\|1322740_1324531_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP007605.1\|WP_038420430.1\|1343105_1343969_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	8.09555e-11
NZ_CP007605.1\|WP_080261104.1\|1336831_1337308_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.05166e-35
NZ_CP007605.1\|WP_023591539.1\|1344019_1344673_+\|IS607-like-element-IS607-family-transposase	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	1.24788e-64
NZ_CP007605.1\|WP_038420162.1\|1329960_1330629_-\|membrane-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.7913e-15
NZ_CP007605.1\|WP_023592476.1\|1332507_1334058_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP007605.1\|WP_023592471.1\|1324545_1326396_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|129308	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	0
NZ_CP007605.1\|WP_080261103.1\|1326398_1327178_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	4.14175e-64
NZ_CP007605.1\|WP_023591540.1\|1344647_1345907_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.68849e-42
NZ_CP007605.1\|WP_023592473.1\|1328213_1329917_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0

>NZ_CP007605.1|WP_038420164.1|1335438_1335777_-|lysozyme
MLRLNKLILAASFLIVDSEGFSPSVYTDKTGHPTIGYGYNLSVYSYWGKRITKAYGLLTDILKKNHKALLSYGWYKNLDAMRRMVILDLSYNLGLSGLLKFKQSIKAIEETE
>NZ_CP007605.1|WP_023592477.1|1334057_1334939_+|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFLVRDVLKCSLKEAQRHLDKQRLKHNQQVVRKSQMIQGVVSLIHFKPNEKTQVLVFETKDFGVFDKPHQVYTHPKGYFYHESLLDCIQSHFSKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKSMKIDKPILTPQNIQKDLRIRSKISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSINHRIVGEGLYGVADENAREYLQLKRENNAPLLMLHASSLEFEFKGANYKITSQIPKRFMPFLKD
>NZ_CP007605.1|WP_023592476.1|1332507_1334058_+|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMQINTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIIIPNRFIDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDEIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLTLKLKDIDRELLEIIEAGEPYGQENPEPLFQARNLEVIEEKIIKESHQILRFKDKECVKEAIYFNAERFLKAGEKVSAIFSVELDECSNEPKMFVKSLL
>NZ_CP007605.1|WP_023592475.1|1330882_1332499_+|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIRSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDVQVNIEWLDSENFNEKTDLEGVDAILVPGGFGERGIEGKICAIQRARVEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIGDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPNIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKS
>NZ_CP007605.1|WP_038420162.1|1329960_1330629_-|membrane-protein
MAENSFKNVSTQPKVFFLLPVKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVILFEALLESLKHLFAHPVQWLSHSANFPNATALSLTLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NZ_CP007605.1|WP_023592473.1|1328213_1329917_-|flagellar-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSRDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEQEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPITPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDNAKG
>NZ_CP007605.1|WP_000201853.1|1327164_1328196_-|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NZ_CP007605.1|WP_080261103.1|1326398_1327178_-|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNGASLETPNHPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV
>NZ_CP007605.1|WP_023592471.1|1324545_1326396_-|1-deoxy-D-xylulose-5-phosphate-synthase
MQNKTFDLNPNDIVGLELVCQTLRSRILEVVSANGGHLSSSLGAVELIVGMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESAYDYFIAGHSSTSVSIGVGVAKAFCLKQALGMPIALLGDGSISAGIFYEALNELGDRKYPMIMILNDNEMSISTPIGALSKALSQLMKGPFYQSFRSKVKKILSTLPESVNYLASRFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNGTLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSEFVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILKPVKSFEIMDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER
>NZ_CP007605.1|WP_023592470.1|1322740_1324531_-|elongation-factor-4
MKNIRNFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVSAKAKLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTFKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVYEVHLTDNSIKYIQNPSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEKGRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVELPQEAFLAILKID
>NZ_CP007605.1|WP_038420166.1|1336338_1336644_-|hypothetical-protein
MKIMHQVKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIIFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
>NZ_CP007605.1|WP_080261104.1|1336831_1337308_-|sel1-repeat-family-protein
MPPKQSRSLQTSFRKSYGRGVEKNLIKAAYFYSKACDLKDGGGCGNLGVLYQNGQGVEKDLTKAAYLYSKACELKDGLGCKDLGSLYYNGKGVEKNLIKAAQLYTKACELKEGGGCGALGGLYYNGDGVKRDSKKAAQYISKACKLGDQEACEALKEK
>NZ_CP007605.1|WP_023592489.1|1340939_1341272_-|hypothetical-protein
MKIIIDNSGSMNENGKKEALQLWLLAFEQLAKNKNTDMQKWDLKGLKGEFEDALLLNDGHFTEEIQVKSSVAFGADANMIKLKEISSKVFDSAEIFQVLHFMKKVDAIKQ
>NZ_CP007605.1|WP_038420430.1|1343105_1343969_+|tyrosine-type-recombinase/integrase
MSDCKMSRVSRELFNNIKSFLHHKLKTMIRIQSVNDSQLVLKWQDRVLECQSLIALKELNRKLYNQGIRHTIMMQGLFLFFEYFDNRIKLKSLHDLAEEQVIDFLFGLAKNRKPSSMAKYVMYLRQFFDYLDKKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFVQALLKYHPKTSFEKRNQCILLLIALGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERYAYIEKEFLQIPLNAWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGYKQKLKYYNNL
>NZ_CP007605.1|WP_023591539.1|1344019_1344673_+|IS607-like-element-IS607-family-transposase
MNKRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINRNIVFNQDELKTIAYARVSSHDQQDDLIRQVQVLELYCARCGFNYEVIQDLGSGMNYYKKGLTKLLNLILDNQVKRLVLTHKDRLLRFGAELVFSICEAKEVEVVIINKGDENVRFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVITNNVSYLNHA
>NZ_CP007605.1|WP_023591540.1|1344647_1345907_+|transposase
MSAISITHKIALKPNNKHITYFKKAFGCARLAYNWGLAKWKENYQLGIKTNHLQLKKEFNALKKSQFNFVYEVTKYATQQPFIHLNLAFNKFFRDLKKGLVSYPKFKKKREFQGSFYIGGDQIKIIQTVNTDYLKIPNLPPIKLTEKLRFQGKIHNATITQKGDHFYVSISCGIDESEYKRTHKLQESHNKLGIDIGIKSFVSLSNGLNIYAPKPLDKLTRKLVRISRQLSKKIHPKTKGDKTKKSNNYLKHSKKLTHLHEKIANIRLDFLHKLTSSLIRHSSSFCLESLKVKNMFKNHRLAKSLSDVSMSVFNTLLEYKAKYSNKEILRADTYYPSSKTCSNCQKVKQDLKLKDRVYQCLECGFELDRDINAAINLLKHLVGRVTAEFTPMDLTALLNDLSNNRLATSKVELGIQQKS
>NZ_CP007605.1|WP_023592491.1|1346002_1346281_+|hypothetical-protein
MFKSRLNSWILLGIFGLLVVVFWDVIKYKIEDLKHAHYLSQVKEREEYYKNHIEEALKKDSECLEKGGDKADCSAAMRIAAGERIRRMLEIK
>NZ_CP007605.1|WP_023592492.1|1346282_1347545_+|P-type-conjugative-transfer-protein-TrbL
MAAPLLALPFLSNPLVLGALAVIGTGAYLLYNKQDSLVMQADGLYSDILGFFISFSNKILKEIGEPLANVVQPFGMVLGVLLILLYSFKRYQNNDLFEIKTFLMLFVFVGYLSLYHYAFKSDGSSSVNGRSSFAFQNHVTEIFDAPANLLNAGISNVVKEYQTNSAGEYKKIDARHSITNANISFHVRQILSSLNKLYEVFTINNGLSPKTLIAAVLLLVILGLEFFLLFKVFCYVFMTYLEKIIYLSLVIFMLPLGFFQQTRGFLVSYVKKIISLTFYMPLLLLLVLFNSFALQYAIKVGGSNEIVAKFGIIVVIGISLAFIQKVPEMINAIFGTQGGLTDAKSFVYQGVQIASAGAGAIAGSLKSAGRSAFGRTLESYKDAKSTINSTTANMRDMPGHPGVRVGVETIELPKSHRASK
>NZ_CP007605.1|WP_038420169.1|1347617_1348301_+|hypothetical-protein
MQDLQHFKNDITLILSRERLDTYDSLEQYKENLKLISFITPKISSLEIYLRNALDYCLTQIKGSDWVFSEYSLTNLINEQKEKKKEITHSLILSKMSLGAVIRLIFCYKLEGVILDLKRINFKSYYPNNKNALFINNKKNPLSSASKVHIALNLLWTIRNRAYHWENLLKTKPNNRPRITTYFTGLKDNDRAKIPMNISVEPSKIVLFLDDLIKSIGNKDLENLSSL
>NZ_CP007605.1|WP_023592495.1|1348588_1349266_-|type-IA-DNA-topoisomerase
MKDSVIIIESPNKVEKIKQLTGAEVYATIGHFTNLIGVDIENNFACKFEIKEDKAKKINFLINACRDKKVYIATDPDREGYGIGYQFYEKIKNVASEIYRAEFHEITPSGIESGLKNAVLFSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLSELSAGRVQTPALALICQRDQEIRDFDKLDAEEKVEYQIQANIVCNEKEAIIKHVRVLSLKFLSSLILM

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Crispr_ID: NZ_CP007605_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007605_4

1443771-1443855

Orphan

Consensus_repeat	Method
CATGCGAGAAGTAGTGGTTCAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007605_4

>merge|NZ_CP007605|4|1443771-1443855|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAACGCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGGCATGCGAGAAGTAGTGGTTCAAGAA

>NZ_CP007605|4|4|1443771-1443855|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAA	CGCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGG
CATGCGAGAAGTAGTGGTTCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007605.1\|WP_001126880.1\|1441365_1442376_+\|glucokinase	unknown	unknown	gnl\|CDD\|129832
NZ_CP007605.1\|WP_000124331.1\|1448306_1449530_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP007605.1\|WP_023592556.1\|1431863_1432898_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|273487
NZ_CP007605.1\|WP_023592561.1\|1437514_1439341_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NZ_CP007605.1\|WP_000486466.1\|1447328_1447889_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP007605.1\|WP_023592569.1\|1451984_1452818_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_023592562.1\|1439407_1440685_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441
NZ_CP007605.1\|WP_023592570.1\|1452822_1454799_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP007605.1\|WP_023592564.1\|1442545_1443592_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP007605.1\|WP_023592566.1\|1445072_1446380_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023592568.1\|1450596_1451919_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NZ_CP007605.1\|WP_023592567.1\|1446386_1447049_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP007605.1\|WP_023592571.1\|1454868_1455585_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139585
NZ_CP007605.1\|WP_023592559.1\|1435927_1436800_-\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NZ_CP007605.1\|WP_023592563.1\|1440695_1441379_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NZ_CP007605.1\|WP_000656174.1\|1447904_1448297_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP007605.1\|WP_000238135.1\|1449542_1450487_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NZ_CP007605.1\|WP_038420223.1\|1433429_1434965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007605.1\|WP_023592558.1\|1434985_1435738_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP007605.1\|WP_023592560.1\|1436869_1437496_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490

Protein	Function_ID	Function_description	E-value
NZ_CP007605.1\|WP_001126880.1\|1441365_1442376_+\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP007605.1\|WP_000124331.1\|1448306_1449530_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP007605.1\|WP_023592556.1\|1431863_1432898_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|273487	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE. Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described by a separate model. [Energy metabolism, Sugars].	0
NZ_CP007605.1\|WP_023592561.1\|1437514_1439341_-\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NZ_CP007605.1\|WP_000486466.1\|1447328_1447889_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	3.48516e-128
NZ_CP007605.1\|WP_023592562.1\|1439407_1440685_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP007605.1\|WP_023592570.1\|1452822_1454799_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP007605.1\|WP_023592564.1\|1442545_1443592_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	4.2515e-163
NZ_CP007605.1\|WP_023592569.1\|1451984_1452818_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.3906e-32
NZ_CP007605.1\|WP_023592563.1\|1440695_1441379_+\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	2.97985e-92
NZ_CP007605.1\|WP_023592568.1\|1450596_1451919_+\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP007605.1\|WP_023592571.1\|1454868_1455585_-\|hypothetical-protein	gnl\|CDD\|139585	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.	0.00261993
NZ_CP007605.1\|WP_023592559.1\|1435927_1436800_-\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	4.33539e-47
NZ_CP007605.1\|WP_023592560.1\|1436869_1437496_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	2.03158e-111
NZ_CP007605.1\|WP_000656174.1\|1447904_1448297_+\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	5.72644e-84
NZ_CP007605.1\|WP_000238135.1\|1449542_1450487_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	6.58599e-136
NZ_CP007605.1\|WP_023592558.1\|1434985_1435738_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.16985e-146
NZ_CP007605.1\|WP_023592567.1\|1446386_1447049_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.12066e-36

>NZ_CP007605.1|WP_023592564.1|1442545_1443592_+|NAD(P)-dependent-alcohol-dehydrogenase
MRVPSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDVHSAYSEWKEGIYPMVPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPALSVFDFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NZ_CP007605.1|WP_001126880.1|1441365_1442376_+|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECIEVLRCEDFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLDLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVMKKTPGLDGAGIALENYLLHDKI
>NZ_CP007605.1|WP_023592563.1|1440695_1441379_+|6-phosphogluconolactonase
MGYQLFEFENLKDCHKALIERFKEFFNTALKKHHQVSIAFSGGRSPIGLLQKLSVLDLKWHACLISLVDERIIDTSHKDSNTKLLHDYLLQNNALKASFTPLLPKKISGDTNALFHFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSISGVEKRGVLERALKENAPYSLPIARILHSKKVTTEVFYAKN
>NZ_CP007605.1|WP_023592562.1|1439407_1440685_+|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSDEEFLALLCEKTQLHSREKGEEYLAHISYFCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFATTAQHLAKNALNHANTRLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFIAIKAFLDTPKFKGVPFYLKHAKKMPRNQASVKIHFNAVNTLEFFLSQDKITLTLQDHQNPLILETHNKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHHLNESEFLKPLYQ
>NZ_CP007605.1|WP_023592561.1|1437514_1439341_-|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSVLNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDTHTIMDTKTQKGMQNYTKTPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDWIELDAPNNALNVLEKDFEKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
>NZ_CP007605.1|WP_023592560.1|1436869_1437496_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVVEDIKDAVPLAQSLVEGGIPIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALEWGYNALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISTDNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR
>NZ_CP007605.1|WP_023592559.1|1435927_1436800_-|Sel1-like-repeat-protein-HcpC
MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKMVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAAKNFKEALDRYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV
>NZ_CP007605.1|WP_023592558.1|1434985_1435738_+|SDR-family-oxidoreductase
MAHILVSGATSGFGLEIAKAFLQKNHVVFGTGRRKENLQELQLAYPKHFIPLCFDLKNKLETKRAIETIFSMTDRIDALINNAGLALGLNKAYECELDDWEIMIDTNIKGLLYLTRLILPSMIEHNQGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVEPGLCGETEFSMVRFKGDKIKAQSVYENTIYLKPQDIANIVLWIYEQPLHVNINRIEIMPVSQTFAPLPTHKNP
>NZ_CP007605.1|WP_038420223.1|1433429_1434965_+|hypothetical-protein
MKKLLYTILALLLIGLLTTYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSTLILKGDFSLLKQSVDLNYHIDIKNLRSFKEWIPYPLRGAIITSGNIKGHRKALMIQGVSNVAQSHTAYNALLDDFKLSHLSLNAQDANLEDLLYLINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALINQMFHLNLKDTLIFSLSHSSDFKESKAISDTTLTSPLGNFTALKSEYLFSILKLNAPYTLEIPNLAKLYNITNHPLKGSLTLKGAIEQSPKLLKVSGHSNLLDGALDFTLFNKDLKGRFSNISTLKALDLFHYPKFFQSIADANLDYDFIAKQGALKARLKNARFLKNAFSDFLYSISKFDITKEIYNDANLVSQINQQRLLSSLSLKSPKTQLKIHNGLLDLNTKQMDMLMDAEILKFIFKMKLQGNMHQPKFSLILNEKAIQQNLQQGLKEILKNDTLKKGLDHLLKDDKLKEKLEKGLKGLF
>NZ_CP007605.1|WP_023592556.1|1431863_1432898_-|UDP-glucose-4-epimerase-GalE
MALLFTGACGYIGSHTARAFLEKTKENIIIVDDLSTGFLEHLKALEHYYPNRVVFVQANLNETHKLDAFLNKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCLKHAIKRFIFSSTAVVYGESDFSLNEESPLNPINPYGASKMMSERILLDTSKIADFKCVILRYFNVAGACMHNDYTTPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGTCIRDYIHVDDLANAHLASYQTLLEKNKSEIYNVGYNQGHSVKEVIEKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTPFKPLYNNLDTIIKSALDWEEHLLRFQ
>NZ_CP007605.1|WP_023592566.1|1445072_1446380_+|hypothetical-protein
MIFLKKSLYALLFSGFLIPPLIKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNASPHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFNFLGGGDGYHLYGKGGKWFVMYQQFLTLTIDTRELIDFVKSKIPK
>NZ_CP007605.1|WP_023592567.1|1446386_1447049_-|outer-membrane-protein
MNKTTVKILMGMALLSSLQAAEAELDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGVIAQNLGKENSLFQLLVKVGFRLGFLHNEITFGLKFPFIPNKRTEIIDGLSTTTLWHRLPVAYFNYIYNF
>NZ_CP007605.1|WP_000486466.1|1447328_1447889_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP007605.1|WP_000656174.1|1447904_1448297_+|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NZ_CP007605.1|WP_000124331.1|1448306_1449530_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLHGPKMSFF
>NZ_CP007605.1|WP_000238135.1|1449542_1450487_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NZ_CP007605.1|WP_023592568.1|1450596_1451919_+|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGRIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKSVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANINNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFITPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLIFSQRVLLELPKKGLSREYSYSIVQENAMKIWEILQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFG
>NZ_CP007605.1|WP_023592569.1|1451984_1452818_+|outer-membrane-protein
MKRALYLVLGLSYALHADSFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGFGYQLGSVQHNYSNLNLFQQFNKSQILFSDGLSPVFKNSYVSNGFGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGQKESQFIIISTYGTYMDLLFNAYNGDKFFAGFNLGIAFAGVYDKVSDALLYQALLLDTFGGKVDPNGFQFLVGLGVRLGSKRNQFGFGIKVPTYYFNHYYSMNNISNNSGDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP007605.1|WP_023592570.1|1452822_1454799_-|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIETLTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITNYRRTKQEEFNKLHNITPKTVTRALEEELKLRDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NZ_CP007605.1|WP_023592571.1|1454868_1455585_-|hypothetical-protein
MNYPNLPNSALEITNQPEVKEITNELLKQLQSALNSNSLFTEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLTNAGDSLKTKMKEYEGFFSDFNTSMKANEQEVTNILNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDTANNQITENKTQAITNINQAKESATTQINTNKTQAITNINEAKTTANNEITANKTESLEAIKTEKKQATSEIIEAKKRSLSKH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007605_2	2.2\|741908\|31\|NZ_CP007605\|CRISPRCasFinder	741908-741938	31	MN694034	Marine virus AFVG_250M807, complete genome	4239-4269	8	0.742
NZ_CP007605_2	2.2\|741908\|31\|NZ_CP007605\|CRISPRCasFinder	741908-741938	31	MK448821	Streptococcus phage Javan623, complete genome	29727-29757	8	0.742

1. spacer 2.2|741908|31|NZ_CP007605|CRISPRCasFinder matches to MN694034 (Marine virus AFVG_250M807, complete genome) position: , mismatch: 8, identity: 0.742

ttcaaaaacagattgagtgctattaaagttg	CRISPR spacer
tgggaaaacagaatgagtgctcttaaaccta	Protospacer
*  .******** ******** ***** .*.

2. spacer 2.2|741908|31|NZ_CP007605|CRISPRCasFinder matches to MK448821 (Streptococcus phage Javan623, complete genome) position: , mismatch: 8, identity: 0.742

ttcaaaaacagattgagtgctattaaagttg	CRISPR spacer
gtcaaaaacagtttgattgctatttggatta	Protospacer
 ********** **** ******* ...**.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

167626 : 230684

Helicobacter_phage(41.67%)

tRNA,integrase,transposase

attL 214497:214556|attR 226240:228270

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000312853.1\|167626_168388_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.7e-32	33.9
WP_038419623.1\|168406_169738_-	MFS transporter	NA	NA	NA	NA
WP_038419625.1\|170051_171308_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_038419626.1\|171319_172561_+	phosphopentomutase	NA	NA	NA	NA
WP_038419628.1\|172557_173259_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_038419629.1\|173731_175633_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_038419631.1\|176091_177399_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.9e-51	31.3
WP_023591590.1\|177527_178751_+	sugar MFS transporter	NA	NA	NA	NA
WP_023591591.1\|179021_179573_-	hypothetical protein	NA	NA	NA	NA
WP_023591592.1\|179693_180527_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_023591593.1\|180575_181322_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-29	35.6
WP_023591594.1\|181323_181995_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_023591595.1\|181997_182651_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_162146320.1\|182830_184924_+	carbon starvation protein A	NA	NA	NA	NA
WP_038419634.1\|185260_186676_-	outer membrane beta-barrel protein HofH	NA	NA	NA	NA
WP_023591598.1\|186983_188621_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_023591599.1\|188684_189845_+	MFS transporter	NA	NA	NA	NA
WP_023591600.1\|189851_190826_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	3.3e-06	22.7
WP_001090949.1\|190851_191043_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_023591601.1\|191167_191749_+	DedA family protein	NA	NA	NA	NA
WP_000516071.1\|191840_192335_+	flavodoxin	NA	NA	NA	NA
WP_023591602.1\|192387_192810_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_023591603.1\|192901_193435_-	Fic family protein	NA	NA	NA	NA
WP_023591604.1\|193461_194235_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_038419638.1\|194248_197953_-	Hop family outer membrane protein HopL	NA	NA	NA	NA
WP_038419640.1\|197975_200066_-	Hop family outer membrane protein HopI	NA	NA	NA	NA
WP_023591607.1\|200173_201235_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_001105857.1\|201246_201654_-	flagellar assembly protein FliW	NA	NA	NA	NA
WP_038419642.1\|201790_204409_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	7.7e-143	39.1
WP_000484802.1\|204424_205771_+	signal recognition particle protein	NA	NA	NA	NA
WP_000216129.1\|205845_206076_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_001208533.1\|206092_206440_+	KH domain-containing protein	NA	NA	NA	NA
WP_023591609.1\|206440_206995_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_023591610.1\|206995_207685_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_023591611.1\|207706_208063_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_023591612.1\|208279_209077_+	NYN domain-containing protein	NA	NA	NA	NA
WP_038419646.1\|211602_211992_+	hypothetical protein	NA	NA	NA	NA
WP_000965788.1\|213461_213932_-	hypothetical protein	NA	NA	NA	NA
WP_023591615.1\|213986_214490_-	type IA DNA topoisomerase	NA	NA	NA	NA
214497:214556	attL	NA	NA	NA	NA
WP_023591540.1\|214549_215809_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|215783_216437_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591616.1\|216732_217125_-	DEAD/DEAH box helicase family protein	M5AAC3	Nitratiruptor_phage	2.3e-19	42.6
WP_080261121.1\|217980_218694_+	hypothetical protein	NA	NA	NA	NA
WP_038420330.1\|218698_219328_-	hypothetical protein	NA	NA	NA	NA
WP_023591620.1\|219913_220396_+	hypothetical protein	NA	NA	NA	NA
WP_000006537.1\|220527_220779_+	hypothetical protein	NA	NA	NA	NA
WP_000009099.1\|220750_221554_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_023591621.1\|221870_222938_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
WP_000462384.1\|224284_224494_+	hypothetical protein	NA	NA	NA	NA
WP_001105126.1\|224490_224742_+	hypothetical protein	NA	NA	NA	NA
WP_023591624.1\|224792_225191_+	hypothetical protein	NA	NA	NA	NA
WP_023591540.1\|226292_227552_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|227526_228180_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591629.1\|230210_230684_+\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.1e-79	94.2
226240:228270	attR	NA	NA	NA	NA

DBSCAN-SWA_2

332363 : 379590

Helicobacter_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023591717.1\|332363_333344_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_023591718.1\|333344_335129_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021306708.1\|335125_336172_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_038419687.1\|336180_336771_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_023591720.1\|336778_337570_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_023591721.1\|337569_339489_+	VacB/RNase II family 3'-5' exoribonuclease	Q0GXV6	Lactococcus_phage	1.0e-35	30.1
WP_023591722.1\|339494_340517_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_023591723.1\|340659_341088_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_023591724.1\|341097_341643_+	single-stranded DNA-binding protein	D7RWG9	Brochothrix_phage	7.0e-14	38.9
WP_000440196.1\|341665_341923_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_023591725.1\|342474_344556_+	Hop family adhesin BabB	NA	NA	NA	NA
WP_000468330.1\|345189_345420_-	YdcH family protein	NA	NA	NA	NA
WP_023591726.1\|345537_348081_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	6.3e-73	35.3
WP_023591727.1\|348082_348646_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_000534786.1\|349103_350108_-	formamidase	NA	NA	NA	NA
WP_023591729.1\|351410_351584_-	site-specific DNA-methyltransferase	A0A249XUJ2	Enterococcus_phage	1.4e-05	50.0
WP_023591540.1\|353194_354454_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|354428_355082_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_038419699.1\|356481_357189_+	hypothetical protein	NA	NA	NA	NA
WP_038419701.1\|357193_357565_+	hypothetical protein	NA	NA	NA	NA
WP_000921941.1\|359308_359590_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_023591735.1\|359582_359897_-	hypothetical protein	NA	NA	NA	NA
WP_038420352.1\|360234_362145_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_023591737.1\|362169_363354_-	hypothetical protein	NA	NA	NA	NA
WP_000394639.1\|363397_363682_-	hypothetical protein	NA	NA	NA	NA
WP_023591738.1\|363762_364419_-	ParA family protein	A2I303	Vibrio_virus	1.9e-05	23.8
WP_023591739.1\|364685_373112_-	DEAD/DEAH box helicase family protein	A0A248SL14	Klebsiella_phage	2.8e-234	34.2
WP_023591540.1\|374032_375292_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|375266_375920_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591742.1\|376339_377002_+	hypothetical protein	NA	NA	NA	NA
WP_023591539.1\|377702_378356_+\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591540.1\|378330_379590_+\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007605

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection