CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007620	Pseudomonas putida strain DLL-E4 chromosome, complete genome	4 crisprs	DEDDh,cas3,WYL,csa3,casR,DinG,RT	0	0	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007620_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007620_1

1475519-1475619

Orphan

Consensus_repeat	Method
AGTCCGTCCGTATTACTAATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007620_1

>merge|NZ_CP007620|1|1475519-1475619|CRISPRCasFinder
AGTCCGTCCGTATTACTAATGGCGAAGCCCCTGCGCTTTTGGCGGCGCTCCGTCCAAGCTGATGGTCTAGGTGTTCAAAGTCCGTGCGTATTACTAATGGC

>NZ_CP007620|1|1|1475519-1475619|CRISPRCasFinder
AGTCCGTCCGTATTACTAATGGC	GAAGCCCCTGCGCTTTTGGCGGCGCTCCGTCCAAGCTGATGGTCTAGGTGTTCAA
AGTCCGTGCGTATTACTAATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007620.1\|WP_003257977.1\|1464106_1464664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_010951896.1\|1473508_1473865_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP007620.1\|WP_080563740.1\|1477949_1478789_-\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NZ_CP007620.1\|WP_031325854.1\|1484924_1485359_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_049798428.1\|1469525_1470551_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_080563743.1\|1482940_1483105_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP007620.1\|WP_013971145.1\|1476169_1477756_-\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_CP007620.1\|WP_080563741.1\|1479010_1479376_-\|TraK-oriT-binding-protein	unknown	unknown	gnl\|CDD\|379959
NZ_CP007620.1\|WP_013971138.1\|1464750_1466220_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP007620.1\|WP_038408920.1\|1470776_1471727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129804
NZ_CP007620.1\|WP_013971139.1\|1466298_1467876_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP007620.1\|WP_013971144.1\|1475846_1476167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_013971142.1\|1471957_1473490_-\|IS66-like-element-ISPpu15-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP007620.1\|WP_013971149.1\|1483804_1484749_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP007620.1\|WP_038408924.1\|1479676_1480048_+\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184361
NZ_CP007620.1\|WP_013971137.1\|1463299_1464055_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP007620.1\|WP_013971148.1\|1480592_1482065_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380294
NZ_CP007620.1\|WP_038410353.1\|1468183_1469395_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP007620.1\|WP_080563739.1\|1473924_1474077_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP007620.1\|WP_144241748.1\|1482053_1482929_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007620.1\|WP_010951896.1\|1473508_1473865_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	6.17683e-43
NZ_CP007620.1\|WP_080563740.1\|1477949_1478789_-\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	6.54579e-51
NZ_CP007620.1\|WP_080563743.1\|1482940_1483105_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.75666e-11
NZ_CP007620.1\|WP_013971145.1\|1476169_1477756_-\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	7.56039e-66
NZ_CP007620.1\|WP_013971148.1\|1480592_1482065_+\|N-6-DNA-methylase	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	3.81311e-22
NZ_CP007620.1\|WP_013971138.1\|1464750_1466220_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP007620.1\|WP_038408920.1\|1470776_1471727_-\|hypothetical-protein	gnl\|CDD\|129804	TIGR00721, Tfx_protein, DNA-binding protein, Tfx family. PSI-BLAST starting with one member of this family converges with significant hits only to other members of the family, which is restricted to the Archaea. Homology is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter. [Regulatory functions, DNA interactions].	0.00107867
NZ_CP007620.1\|WP_013971139.1\|1466298_1467876_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP007620.1\|WP_080563741.1\|1479010_1479376_-\|TraK-oriT-binding-protein	gnl\|CDD\|379959	pfam17273, DUF5338, Family of unknown function (DUF5338). This is a family of unknown function which can be found mostly in Proteobacteria.	7.67926e-06
NZ_CP007620.1\|WP_013971142.1\|1471957_1473490_-\|IS66-like-element-ISPpu15-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.96949e-130
NZ_CP007620.1\|WP_038408924.1\|1479676_1480048_+\|CopG-family-transcriptional-regulator	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	1.73885e-24
NZ_CP007620.1\|WP_013971137.1\|1463299_1464055_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.69754e-11
NZ_CP007620.1\|WP_013971149.1\|1483804_1484749_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.21552e-24
NZ_CP007620.1\|WP_038410353.1\|1468183_1469395_+\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.37246e-59
NZ_CP007620.1\|WP_080563739.1\|1473924_1474077_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	6.16392e-06

>NZ_CP007620.1|WP_080563739.1|1473924_1474077_+|AlpA-family-phage-regulatory-protein
MECGDDGSLTKFPRRIAVSSRKVVWDLAEIEEWIDTCREFGPPPRPGMAV
>NZ_CP007620.1|WP_010951896.1|1473508_1473865_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKARNRIKVLYWERNGFCLWLKRLEAERFKTSPDATDEAIVLTVQELNWLLDGFDLWRNRPHQVLTPRFVA
>NZ_CP007620.1|WP_013971142.1|1471957_1473490_-|IS66-like-element-ISPpu15-family-transposase
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNRKSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSADLPRIEVIHDLPEHELTCACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETVLNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGYVMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKTGRADVALTMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQSVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVAAYEALLPWNCSPEMPR
>NZ_CP007620.1|WP_038408920.1|1470776_1471727_-|hypothetical-protein
MVDMKKQTTIAIWEGCDPSVAEALHRFLDRWEPYSTASKRYAIVRLVEELIDPAVAAYVETLPSRYTGHIPGAGTNVAFSAIMQLVGVAAMVRLQRQLLRAFVLTHDKQSEDDRRFIATLETLIELVLACKRKQPSNKDLGGLNGQRLKGFCRFCGARAELALFAEGEGQRDLDEHLRLSNLYCTTHRPKTPDGRWNPAYRQAMRSVAQFDLELARLSRQCAMRAEPKAKSGDELVDAYIFRYMLSQTLHLADEAELRNLARLMVDMKLTDRRKQILVLQKFGFNQSEIARRLEIERQAVSKALRSIPDCFRLSTP
>NZ_CP007620.1|WP_049798428.1|1469525_1470551_+|hypothetical-protein
MNVINLPSEDETLGPLMLDHIYVTEGASVKDVEGSLSPISPDEKSWDKLALSGLSLAAIATMRTTPIGLLVSAVGAAAVSPFFVQLISRYAVANAEERKQLNEAQALEAARFAAYMRKHSVTPALAEKAGFRFEPGHPLVGKVYKRHPLAGAATHDKHNLYIPSERYDQILLAEREAELIKMLVDMGATRIQISKKSAEVARSSIDGSASTDVAGYGGSSASYSSKNDQARNAMDSREFRLRGKQWHEGDRLTRADYFWLAFEPSWAAVVMAREIGACEAASLEIKETTSFSNDRNIEFQIQAQMLQAGANAQITASTKEETEYFITVEFAPAKEPRNQGA
>NZ_CP007620.1|WP_038410353.1|1468183_1469395_+|site-specific-integrase
MLTDTKLRNLKPQDKLYKVIDRDGLYVAVTPAGSISFRYNYSINGRQETITFGRYGLGGITLAEARERLGEAKKMVAAGKSPAKEKARAKARTKGAETFDAWAEKWLRGYQMADSTRDMRRSVYERELKPKFGNQKLVEITHEDLRALTDAIVERGAPATAVHSREIVLQVFRWAIERGQKVENPADLVRPASIAKFEPRDRALTPDEIALMYQYMDRIGTATSVRAAAKLLLLTMVRKSELTNATWNEINFSEALWTIPKERMKRRNPHLVFLSQQALDFFIALKTLAGGSDYVLPSRYDSDLPMSAATINQVLTLTYRLAQKEGVPLGKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWADMIDEWTLDKPRKTNR
>NZ_CP007620.1|WP_013971139.1|1466298_1467876_+|glutamine-hydrolyzing-GMP-synthase
MALDIHAHRILILDFGSQYTQLIARRVREIGVYCELHPFDMDDEAIREFNPRGIILAGGPESVHEANSPRAPQAVFDLNVPVLGICYGMQTMAEQMGGKVEGSDLREFGYARVDVVGKSRLLDGIEDHIDADGVLGLDVWMSHGDKVTQMPGNFHVLASTPSCPIAGMFDDARGYYGVQFHPEVTHTKQGGRILSRFVQDICGCEALWTPSNIVEDAIAQVREQVGSANVLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFKENMGVKVIRADAEKQFLDNLAGEADPEKKRKIIGRTFIDVFDAEASKLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRKIGLELGLPYDMVYRHPFPGPGLGVRILGEVKKEYADILRRADHIFIEELRKADWYHKTSQAFVVFQPVKSVGVVGDGRRYAWVVALRAVETVDFMTARWAHLPYELLETVSGRIINEIDGISRVTYDVSSKPPATIEWE
>NZ_CP007620.1|WP_013971138.1|1464750_1466220_+|IMP-dehydrogenase
MLRISQEALTFDDILLVPGYSEVLPNEVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMTIEQQASEVRKVKKFEAGVVKDPITIDADATVRDLFDLTRLNNISGVPVLANGDLVGIVTSRDVRFESRLDAKVRDVMTPKERLVTVREGADKNEVRELLHKHRLEKVLIVDDKFNLKGMMTVKDIEKAKAYPLASKDDQGRLRVGAAVGTGKDTGERVAALVAAGVDVVVVDTAHGHSKGVIDRVRWVKETYPQVQVIGGNIATGAAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLSKAIVAGASCVMMGSMFAGTEEAPGEVELFQGRSYKAYRGMGSLGAMAQAQGSSDRYFQDSSAGAEKLVPEGIEGRVPYKGALAAIIHQLMGGLRSSMGYTGSATIEEMRTKPEFVRITGAGMAESHVHDVQITKEAPNYRVG
>NZ_CP007620.1|WP_003257977.1|1464106_1464664_+|hypothetical-protein
MNTQSIIVPKLSTVPVHEARARAILRWLVREKVVEEQLTTCGRTGNRMGHALAEGARKVALHPEKLPFGEQVNGLEVMLKRCIYTPTEGFLEEAGCPECRREVGEPLFESLEEWMPAVSDNFTCPLCGFEDDINGFIYLQPCAFSNLGFIFNNWGEAGFTQAFLDSFADWLDQPVAVVQVKLPQG
>NZ_CP007620.1|WP_013971137.1|1463299_1464055_+|sulfite-exporter-TauE/SafE-family-protein
MLAQLSFSGLDWLPILLGVGAAYIVFGIAGFGTALVAGPVLIHFMPLSRIIPLLVLLDFVAAFGNLLPSRRDVVRGELLRLLPFMAIGCALGVVFLLQLKSDLLLLLMGLFVTAYALYGLAVKVRPASLSGFWAMPMGTAGGLFGALFGSGGFLYALYLSARLEVKEQVRATQSALISCSTVVRLTLFLIAGVYADQSLLLLAACLLPVMLVGLWAGRRLTHRLSREAFVRLVTWLVLASGLALIGRYLSA
>NZ_CP007620.1|WP_013971144.1|1475846_1476167_-|hypothetical-protein
MNSILMFAGFVVLASTLAIAMWAFGRWLRSKGYGPLLDRLGRQCTALQLRVSPLALSASFHMFSGVQHLNRLPLLGSKSNAAQAQQILMAIRATQEAQRLDSPGDR
>NZ_CP007620.1|WP_013971145.1|1476169_1477756_-|P-type-conjugative-transfer-protein-TrbL
MDTRLLLFLALASAFVSGNAMATSDLSHADTSVQGLLDLVLHQSHQWSGKLYDYAIRLFWLLASIQFIWTFIPLVMKQADFGEIVGELLRFVLVVGFFLAIMKYSVEWSSAIVDSFRDAAASASGLSRALEPGDMLAVALDFGRTMVKGISVFSPAKGLLIAVCAILVLACFAFIAAFMFVTLVESYVIINASVLFFGFGGSQWTRDFAIAPMRFTVAIGAKLFVLTLIVGLIVQSAKQWLAAYTNDEASLMTMVGLALVCCYLTKTIPDLIGGMISGTSMGGGSAIGGMAAAGAAGAAAAIATIATAGAAAPATVGALGAAGSSGAAGTGAGAAGAGGGLAGAINSSFAGASSAGGAAPAVGGATPTGVGANTGGGAVAKTASSAGVKTGGGATTQSAPPSSGTQQAAKQTGKASQSGDDNDQKATPKGGAVSSGNALSQAANGGAKALGVIASLTVPGMENAHSASLGAGPPQPAHGASSSLKSATPAAEALAMESNVIRPDTHTSSNSGGTDVSSITSSNDHPEK
>NZ_CP007620.1|WP_080563740.1|1477949_1478789_-|P-type-conjugative-transfer-protein-TrbJ
MRNISAARFKDKTLSENISNETPASPFQKFLRQAAYSTKIVGAAFIAMAVYIASTPAYAIYCSNCSTFYQQMFEYAEAVNTALNTAEQLQTQVQQYQSMITQGTGLPDSMFGSIAADLRNVMNIYDRSQALGRQIQNMDSQFSRAFPGFNSYLNQAANSAESPAQDRFQAWSEQGRDNVKAALEAANLNTSTFETEGEQLDRMMTRSQSAVGRMQALQAGNEIASQNVQQLQKLRDLVATQINMQGNYLAQQGDRAAASEATELQFEARKNTRGGVKGY
>NZ_CP007620.1|WP_080563741.1|1479010_1479376_-|TraK-oriT-binding-protein
MKNTPKEGLSGAGRVAFLARLEEFRVLIQAGWPVTVVYENHGGDKTSLSYSQFARYVGKYIRTPTKRGAQRARATDGTQPPTTPLLEQRQSTHPTQPSTMSKRQPGFQHDPSSGNNRDDLI
>NZ_CP007620.1|WP_038408924.1|1479676_1480048_+|CopG-family-transcriptional-regulator
MTEDTKGKAQPRRRGKPIEVWVTDEEKATITERAEEAGMSRSGYLRALGLNTPMRSVVDLKAVSDLAKVNGDLGRAAGLLKLWLVKRPGGGIRPINLDALISDFRTLQSQILNLMSQIVNNKK
>NZ_CP007620.1|WP_013971148.1|1480592_1482065_+|N-6-DNA-methylase
MKKQILKQYFTDAPEIKSLMCQLLGDVTNLSVLEPSVGHGSFLSGLIGSPSKIDAVDVDADALNVTRQRFGHLNLSLHHKDFIRIFDGDLLTGYDAICETLYDAVISNPPYGLYFDLDYRRQLKKRYPNFYVKESYGLFFMLSILRLKENGRYVFIVPDTFLTSVSHKPLREFIVSAAAPTHIIRFSSRRFETVNFGYGNLCIIAGDRKSLDTTGSVYWADLFDDELPLNLTSVLQSSVASKDLVRGVSTGWSSGMLVEEGRDSANHTVLGDIAECRTGIYTGDNERFIGFDPRRIPRRINGHPIPWEEVKSDKLTAAEMETGIKSGKAYVPLIRGGHRQPFEQPSSAVHWSEESVSFYKTNKKARLQNSSFYFRRGISVPMVSTSRISAALMENAVFDQGVVGIFPKEERDIPFLLIYLNSSIASRKVKEITNGSANNSANYLKRLAVPKLTEEQYRVAAEIYAKAKTDNALPQDVCDKFIESLDVLPL
>NZ_CP007620.1|WP_144241748.1|1482053_1482929_-|hypothetical-protein
MTLDLNKLKFDILDNFHRDLRPAVDEISRLNIEHQKKAQAVNSLAGQIRNAWINWIASLPTTDRTNASLVLQYCYSVASLEYRNKVWPYEYMAFSRRVGELWEGFCSAAWNFPNRANVQRFSHPHFDDVRRTLRARLDSNIGGHARKTELQADIDILFDIIGDINMREDEVFEVDGIPHVIDFKSGFGSNEKGNMLRLQTVGRAYKLWNLNTRLLLLVRQSTNNNYLRVLQNLGLWEVHTSDNAYNLISELTGADIQQVRRMIIDWEHDLSPEFINHLSEQTTDLRAYLEW
>NZ_CP007620.1|WP_080563743.1|1482940_1483105_-|helix-turn-helix-transcriptional-regulator
MSAGLSQEQLANLCDLDRTYIGGIERGERNPALKNIYRLAKALDVSLSNLFESI
>NZ_CP007620.1|WP_013971149.1|1483804_1484749_-|helix-turn-helix-transcriptional-regulator
MPSTSPYLDTDFSFDSPGSLAEAGVLDSRKARIMGSATGHYRAQTVHTGLQYFDCNLQFPEPLKIDKVLPQSLCIVQLFDGAWQHKVDGTLNRYTPGQLHLLGLGESLEAQDQLPADSHARMAGVRIAGDYLHELARDEAQLIPLLALTADGMRFDQLPHCPAVSRLLQQLYLSPYTGGLRRLHCESLSLAIVLELARHLIGPAQATSRPDRGLRDLAIEARRLLDAQLSAPPTAASLARQLGVGETTLRRAFREEFGRPILQYVRQQRLELARSLLLQRLWQVSQVAYHVGYANPANFCHAYKAYFGHPPGSE
>NZ_CP007620.1|WP_031325854.1|1484924_1485359_+|hypothetical-protein
MFAYRKWVALLVASLIFWLSQAHAEQRPDVAEQVVAYMGTEGVKVWTLRIGERAANEALVQIEGVDHDWDMRIQKMQVEKTTKDTRYSTTVDGKKFVVLVVQSGWGGELYLPGEPQPMQVGYSEGLSRQGNAQAFLTDYLAKQQ

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Crispr_ID: NZ_CP007620_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007620_2

2581776-2581880

Orphan

Consensus_repeat	Method
CATCGAGGGTGGCGACGGCAACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007620_2

>merge|NZ_CP007620|2|2581776-2581880|CRISPRCasFinder
CATCGAGGGTGGCGACGGCAACGACCAACTGCGTGGTGGTGCCGGCGACGACATCATCAGCGACATGGGTGGTGACGACAACATCCAGGGTGGCGACGGCAACGA

>NZ_CP007620|2|2|2581776-2581880|CRISPRCasFinder
CATCGAGGGTGGCGACGGCAACGA	CCAACTGCGTGGTGGTGCCGGCGACGACATCATCAGCGACATGGGTGGTGACGACAA
CATCCAGGGTGGCGACGGCAACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007620.1\|WP_038409305.1\|2570780_2572121_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP007620.1\|WP_038409298.1\|2564369_2566277_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|225726
NZ_CP007620.1\|WP_024086777.1\|2572127_2573864_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP007620.1\|WP_003259304.1\|2600374_2601052_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378832
NZ_CP007620.1\|WP_031325771.1\|2568496_2569360_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP007620.1\|WP_038409311.1\|2590077_2594877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339245
NZ_CP007620.1\|WP_038409303.1\|2569450_2570779_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP007620.1\|WP_013972071.1\|2586679_2587378_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP007620.1\|WP_038409300.1\|2566421_2567090_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP007620.1\|WP_038409295.1\|2559892_2560837_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP007620.1\|WP_038409309.1\|2587553_2590070_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP007620.1\|WP_013972061.1\|2567117_2568479_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP007620.1\|WP_013972075.1\|2596483_2596909_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319916
NZ_CP007620.1\|WP_038409297.1\|2561018_2562431_+\|amino-acid-decarboxylase	unknown	unknown	gnl\|CDD\|215475
NZ_CP007620.1\|WP_013972074.1\|2595200_2596127_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP007620.1\|WP_038409312.1\|2599693_2600263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_013972058.1\|2562705_2564079_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP007620.1\|WP_038409308.1\|2585673_2586159_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NZ_CP007620.1\|WP_013972076.1\|2596905_2597685_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP007620.1\|WP_013972077.1\|2597901_2599578_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927

Protein	Function_ID	Function_description	E-value
NZ_CP007620.1\|WP_038409305.1\|2570780_2572121_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.39687e-113
NZ_CP007620.1\|WP_038409298.1\|2564369_2566277_+\|TIM-barrel-protein	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	1.42007e-142
NZ_CP007620.1\|WP_024086777.1\|2572127_2573864_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP007620.1\|WP_003259304.1\|2600374_2601052_+\|hypothetical-protein	gnl\|CDD\|378832	pfam12261, T_hemolysin, Thermostable hemolysin. This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.	4.17565e-77
NZ_CP007620.1\|WP_031325771.1\|2568496_2569360_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.2347e-54
NZ_CP007620.1\|WP_038409311.1\|2590077_2594877_-\|hypothetical-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	1.0971e-40
NZ_CP007620.1\|WP_038409303.1\|2569450_2570779_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.0467e-80
NZ_CP007620.1\|WP_013972071.1\|2586679_2587378_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.156e-75
NZ_CP007620.1\|WP_038409300.1\|2566421_2567090_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.07469e-12
NZ_CP007620.1\|WP_038409295.1\|2559892_2560837_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.71563e-59
NZ_CP007620.1\|WP_038409309.1\|2587553_2590070_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.25643e-20
NZ_CP007620.1\|WP_013972061.1\|2567117_2568479_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.01681e-58
NZ_CP007620.1\|WP_013972075.1\|2596483_2596909_+\|VOC-family-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.97651e-49
NZ_CP007620.1\|WP_038409297.1\|2561018_2562431_+\|amino-acid-decarboxylase	gnl\|CDD\|215475	PLN02880, PLN02880, tyrosine decarboxylase.	2.57225e-142
NZ_CP007620.1\|WP_013972074.1\|2595200_2596127_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.62697e-19
NZ_CP007620.1\|WP_013972058.1\|2562705_2564079_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.1829e-153
NZ_CP007620.1\|WP_038409308.1\|2585673_2586159_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	6.17168e-19
NZ_CP007620.1\|WP_013972076.1\|2596905_2597685_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.41653e-19
NZ_CP007620.1\|WP_013972077.1\|2597901_2599578_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.02567e-121

>NZ_CP007620.1|WP_024086777.1|2572127_2573864_-|type-I-secretion-system-permease/ATPase
MHKPPRTRSELADVLFRLRRSFFALAAFSGVINVMMLTPAIYMLQVYDRALVSRNVTTLTMLTLLVIGLFMLMSALEMVRTRVLIRVGNFLDMDLNRRIFSAAFERNLSRAGGNPAQALQDLTQVRQFLTGNGLFAFFDAPWTPIYLLVCYLIHPLLGLVTLIGSLILVGLAYLTEKATQKPLAEANQAALSSASYANNNLRNAEVIEAMGMLPAIGKRWFQGHLRILQMQTLASDRAAIISSTGRFVRITLQSVILGAGALLAIEGKITPGMMIACSILTGRALAPVEQVIAAWKQLQGSRSAWGRLNDLLHDYPQRPPSMSLQRPMGMLAVENVVAGAPGTSNSIVRGVSFSLVPGESLGIIGPSASGKSTLARLLVGVWPTQAGKVRLDGADIFTWNKAELGPWLGYLPQDVELFEGTIAENIARFAEVDSEAVIRAARSSGVHDMILRFPQGYDTRLAADGSPLSGGQKQRIALARALYGEPNLVVLDEPNANLDDVGEKALVDALAELKARGATVILISHRPNVLCAVDKVLMLRDGAVHMLGSRDEVFAALRKASVIPTATAAPLASVKVRE
>NZ_CP007620.1|WP_038409305.1|2570780_2572121_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MQMTQHTELIPAEARNEIDLDIHRPARWGVWLVAAGFGGFLLWSGLAPLDAGVVATGTVKVSSNRKAVQHLTGGTVEAILVREGDVVKKGQEVVRLDALRAVAEQGAVSAQYIVSKTVENRLEAERDGRDQVTFDPALLKHYGGDPRLLAAMDLQQRLLDTRRAGLAGELSILEENLAATAVQLKGLQQVYGARASQIGFLNQELQGTRVLAAEGYVPRNRLLELERNNADLSAGQAENLNNIARARSQATEIKLRILQRQHDYLKEVESQLTDTAKENTTLADRLRALDYEVTHTVIRSPIDGMVQALSIATVGGIIQPAAKIMEVVPLDQPLQVDAMIPVQAIDKMVPGLDVDLAFPAFNHAKTPNIPGRVKTISADRLMDEESKQPYYLAQVEVTQDGMALLGSNHIRPGMPATVTIKTGERNLLSYLLKPMLERVDASFKEQ
>NZ_CP007620.1|WP_038409303.1|2569450_2570779_-|TolC-family-outer-membrane-protein
MNRPCLMLCLLGLSVQASAMDLKQAWDLLQYQGPIYRAAVHEKEAGSENRAIGQAGLLPQINAVGYFNKVNGSQRQSGRDNDLDYDSKGANVRLRQPLFNKQKMAEYHQGQQRADYSVAVFDAKTQDAAVRLADAYFDVLLASETITLAKAKLNAFEEQLASAKRRMELGAGTITDIDESIARRDLAEADLIEAQDNLVNARRKLEEYIGETPESLTTLQPGFNTPPLMPGNLQDWLVKAQADSPLIHARRHNYELAEEEVKRARAGHWPTLDFVAGYTAGSSQSISELNQRNHYSSIGLELNIPLYSGGSTSALTRQASANSSKALDELDATRQEVISDTTREYRGVQSGALRIQALEKAVASNERSLRSARKGFREGGTSTNSDVLNAEELLFDARHDLFEAKLNYLMSRLRLASSVGSLGDDDIQQINDYLGPELVVSN
>NZ_CP007620.1|WP_031325771.1|2568496_2569360_-|sensor-domain-containing-diguanylate-cyclase
MPVDLQALYPRLIHLMLDTVFVVDRGNQIIFVSDACEALLGYQACELIGTPITDYMHPDDLAITRASIVRVMNGQPHYDFRNRYIRKDGSIVHILWSASWSDEANARIGVARDITAQHQAEEELRFLAHHDPLTRLANRAMFNERLGTALVAARHHNHPLALLFIDINDFKDINDNHGHSVGDRVLCILARRLEGCVGATDTVARMGGDEFTVLLTDYASPEAIAEQVARILAAMAEPLGAEFAGIGAPSCSIGVARFPEDGNDADMLLRHADGDMYRIKRQRAAAS
>NZ_CP007620.1|WP_013972061.1|2567117_2568479_-|chromate-efflux-transporter
MTEHLQGAAEQTRGHISRIEALLFWLKLGFISFGGPAGQIAIMHQELVERRRWISERRFLHALNYCMLLPGPEAQQLATYIGWLMHRTWGGVIAGTLFVLPSLFILIGLSWVYLAWGEVPVVAGIFYGIKPAVTAIVVHAAHRIGTRALKNGWLWAIAAASFVAIFALDVPFPLIVLAAALLGHVGGRLLPGQFAPGGGHGATRASQGPAVIDDDTPAPEHTRFSWGRLLGLLLVGAALWLLPMGVLMATFGWQGTLTQMGWFFTKAALLTFGGAYAVLPYVYQGAVGHYGWLSPTQMIDGLALGETTPGPLIMVVAFVGFVGGYLHPMFGTDQAFMAGAVAASLVTWFTFLPSFLFILAGGPLVESTHNELKFTAPLTGITAAVVGVILNLALFFGYHVLWPAGFDGRFDWPSALIALAAAVALFRYKRGVIQVLIACALAGLATHLLTGAQ
>NZ_CP007620.1|WP_038409300.1|2566421_2567090_-|methyltransferase-domain-containing-protein
MRNPEDALLDSWQHNAQAWIDAVRSGSIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALGDRGVEAVGVDGDRALVDAARAAGSAEVHLASYAQLAAAQAYVGKDYDLICANFALLQQDIIPLLAAMNALLAPGGALVIQTLHPWSVADGDYQDGWREESFAGFGGDWQVMPWYFRTLASWLSALDMAGLRLVSLQEPQHPQSALPQSLLLVAERP
>NZ_CP007620.1|WP_038409298.1|2564369_2566277_+|TIM-barrel-protein
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYAGSPRQVRQMCADLGIAITLFQPFRDFEGCRRDRLQKNLDRAERKFDLMQELGTDLVLVCSNVQADALGEEQLLVDDLRLLAEHAGKRGLRIGYEALAWGRHVNTYQQVWNLVRQADHPALGVILDSFHTLSLKGDPSAIRDIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEMDMAGFLAPILATGYRGPLSLEIFNDGFRAAPPRQNAADGLRSLLYLEEHTRLRLEQEGTSIEPGVLFTPPAASAYDGVEFLEFAVDEAVGARLGSWLKRLGFADAGKHRSKEVQLLRQGDINIVLNAEPYSFGHNFFEAHGPSLCATALRVKDQQAALKRATAFRGQPFRGLVGPNECEVPAVRAPDGSLLYLVEQGTAGQTLYDTDFSLDKNATATGGLRRIDHMALALPAESLDSWVLFYKSLFDFEADDEVVLPDPYGLVKSRALRSQCGTLRLPLNISENRNTAIAHALSSYRGSGVHHIAFDCDDIFREVARAKLAGVPLLEIPLNYYDDLAARFDFDDEFLSELAYYNVLYDRDAQGGELFHVYTEPFEERFFFEIIQRKGGYAGYGAANVAVRLAAMAKARSGAARKPVL
>NZ_CP007620.1|WP_013972058.1|2562705_2564079_-|MHS-family-MFS-transporter
MAHSSSQAKKATASGWIGSALEYYDFFIYAQAAALIFPQIFFPNTDPKMAIIASLATYGVGYLARPVGAFVLGHWGDTRGRKNVLLLCMFLMGLSTMAVGLLPTYHDIGLLAPALLVVLRLVQGFAVAGEISGASSMIMEHAPFGRRGYYASFTLQGVQAGQVLAAAVFLPLAYFMPSEAFNDWGWRIPFLLSAFVLIAGFIIRKEVHETPAFVKEEKQDKVAKSPISEAFRHSWKHMVLVMFMALMNVIPVVATIFGAAYAVQPAYGIGFDKSVYLWIPVVGNIVAVLVIPFVGNLSDKIGRRPTMIAGCLGSGLLAFVYLYAISIQNVPLAFASSIVMWGMVYQGYNAVFPSFYPELFHTRYRVSAMAIAQNIGTMLTAMLPALFALVAPPGSDNIPLVVGSLAFFITCVCALAAYIAPETHRLAMEDLGNPDAKPMDKTAYEASRKGSFQAVSN
>NZ_CP007620.1|WP_038409297.1|2561018_2562431_+|amino-acid-decarboxylase
MTPEQFRQYGHQLIDLIADYRQTVGERPVMAQVEPGYLKAALPAQAPRQGEPFAAILDDVNQLVMPGLSHWQHPDFYGYFPSNGTLSSVLGDFLSTGLGVLGLSWQSSPALSELEETTLDWLRQLLGLSGQWSGVIQDTASTSTLVALICARERASDYALVRGGLQAQAKPLIVYVSAHAHSSVDKAALLAGFGRDNIRLIPTDERYALRPEALQVAIEQDLAAGNQPCAVVATTGTTATTALDPLRPIGEIAQAHGLWLHVDSAMAGSAMILPECRWMWDGIELADSLVVNAHKWLGVAFDCSIYYVRDPQHLIRVMSTNPSYLQSAVDGEVKNLRDWGIPLGRRFRALKLWFMLRSEGVEALQARLRRDLDNAQWLAGQIGAAAEWEVLAPVQLQTLCIRHRPAGLEGEALDAHTKGWAERLNASGDAYVTPATLDGRWMVRVSIGALPTEREHVEQLWARLQEVVKG
>NZ_CP007620.1|WP_038409295.1|2559892_2560837_+|LysR-family-transcriptional-regulator
MNPAFASLSLAHLRTLDHLLQLKNLSHAAERLGVSQSALSRQLAHLREAFDDPLLVRQGRGYVLSEHAEALVEPLRQVLEELHALRQPAVFDPGRCERRFCLAASDYVAEHMLPLLVAALEREAPGVSLEYRTWQAGQYALLASGEIDLATTLFDESPPNLHGRLLGEDRAVCLMRHDHPLAVHGALSQADYLAHKHVRISGGGDKDSFIDRHLRAQGLQRRVSLEVPFFSATVQVIANSQALATVPEHIARQLCRLHDLAWRPLGFIDHSQRYWVVWHQRLQASAEHRWLRNRVFELWRQSQFGVQGGHAGLP
>NZ_CP007620.1|WP_038409308.1|2585673_2586159_+|cysteine-hydrolase
MRQALLIVDVQSTFSPPEWLVDGLRRLSANIPTIASVELHDEQVTPFERQLGWHPAAEDESLVEADQVFVKHGYGQSAEAIEYIRQLGVERVLVCGLQTETCVLAAGFALFDAGLMPTLVTDMTVGSSLDRSGKLGTDLWKHHFRQVTTSAEVLAELAARG
>NZ_CP007620.1|WP_013972071.1|2586679_2587378_-|pirin-family-protein
MLQLRPFESLGHANHGWLDAHHHFSFAEYYDPARMHWGNLRVWNDDLIAAGSGFPPHPHRDMEIITYVREGAISHQDSLGNKGRTEAGDVQVMSAGTGIVHSEYNLEDVDTRIFQIWIVPERTGEAPQWGTRPFPKGERGEGFVTLASGRAGDEDSLQIRTDARLVAATLRAGETAEYRFDTARRGYLVPAKGLVEVNGLRAKARDGVAIEQEEVLRVTAIEDSEIVLVDVA
>NZ_CP007620.1|WP_038409309.1|2587553_2590070_+|UvrD-helicase-domain-containing-protein
MRRTCPLILFFNGVTVAHEQPQAPADLTPPAQLPWFRRLAARLLGRGLTRLQAQHRDSWFLGHASGQRSGHADGVREGFERGRVEGYEAGRQVLVIRDTRPDTAAVPGRDDNLFDDWRLPLTAELKKRFKADVAQRLPAEAQPSAAQWKLIFSDTPSTCVVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQPPQARELVRTFHSRILPLVRSLPGFGQVRAFETLGNEMPAGREAEAESNPFDLRLNDAQRQQLNQCYSTLLGESPRFAELVGLLRSEALQLKPLDPNNPDVQKRAQVTQLAAQRDEELCDVIEDLWFAAGAWPIKGIEPCRETIEIRGSRFHVHGRLAGQGPLLVLGFDPAESAQYQRPGAKLAVRAEWAVKRTLLQAFCDQPLIWLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVGAANFIENLGLEVNTAVAAMSFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYNRMFALFGENNPENLQLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRASLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELPGSPVKVFDRDEAALGETLIEHYQRGETVMMLYRKGSDRALMNEHLQGVLHAEAALPAEQRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQRLAYVAVTRAVRHCYWHVEAANAEAAAAPRASSQVDGRQAFFEDLRGH
>NZ_CP007620.1|WP_038409311.1|2590077_2594877_-|hypothetical-protein
MHPDHTRRVVQSVRKDYLDENGSPYAWYAAASDEDQARLRQLISARNAGFKALQALLDDFRQISEFCKPLLEGRLGPDVEVDKAQYLHQPFKVYTTLENVPGLDFSLGGDDTYIKRPEGPPQKRSLLEAALHNFEGPDEVGPFDTLTLGTDNVASLPGLEPEAFVNLCRSLNLGQQYQDHLQGIYEGPRKAAIEQQWIDASQQALKTEAMIAYLKGLLTLKGHNALVQLCDNESTPRYGEHKLRCWRFSLFGIPLHGVLLIGPDEADQTNPCMLYIPHDSEHPVREFASLQKAGSLMRQRLVQTTFRQHLISFADQDNQVELSRKLENALFEHDASTRKPKNKPELHFKRTRLAFPIWQVLYRDHKRRVKATARAIAVPTADADAKARKERLQHWLDAGMNVLNVAAFFVPGLDAAMLGVFAYDLMDSVFTGFEAWEEGDTQEALQQLESLAINAAVIAGFAVGSKALKASGFVDALESVWKGGRERLWHPDMGPYSTSNSLPVGVQKNAQGLYIIDGKTHVWLQGKLYEVFETDGQWHVRHPDAPDAYTPALRNLGDQRWQLAHDNPLEWDDAQLLEGLGRFGQGLDASDQLAALRITEVDADTLRRSQVTGSQPPPLLADTLLRLRLADDVEGIITRVRHGQPLAAHMNFALPELVQLPGWPENYRLKVFTGAEKWGEADYFGAQPKADTVQIEIGREELDDGELSKIVLAGMDEDVIQQLLPDTPVEQRPGALNELLANHLTARRHEIFASMLESHRAPLGDEAQTLGRQFPGLPDNALEELVAHADSTERERLKNGRVPLRVAEEARYLQARARLDRALTGLYRADLANADSQLLRDALVAEQPQASEAELFASAVADRSGCAVLLGQQSIKPGFRSPMRLAHGRIGYPLSGRGAAISTSAATSRLNRLFPSLNSKQITALSDELSRTRDLGSAIRQLETEWQTLDSNLESWYKSAPDIFRRQDREKCAESLKEAWRREGSAKLGTLVLEKIQISELPAITASLPYIRELKLNDLQLQRLDRAFLSCFPNLQVLRVTNIATINPQALFEALEAVPKLQTLDLTNNTVVTLSPTAQRVLAAMPGLRELNLTGNNLTLDQATLAFLCDQPLNILKLSRNRITLDENLATRFQDMIHPQQLDLSFNSLQHAPDVRYMARLQHLDLDRTQLHAFPPGLSTLMNQRQYQLRYLNLSSNHIPNVPDLVNILRSPYVRDVAARVRDRRWLFNYNNLEAEPARQLRARGVNIFEHPPERQEWQRLWRDSATDHQVQVWSDLFDQNDNGDLQAVLERLTDSVEARRDLRSLRARVWELLEQAHGDAVLRERLNEVAKIFPPTCGDAGADAFSALEVELLIHQVSGEAQDTAKPILDLYRKLYRREKVNELADRISLQRGLRKRALQEHAGQLPDRDVLDVAAAFPDADLTTGLVDDIEVRLALRQSLSEDLDFPEPSSGMLYRDLAKINQQIIDNVRDAVVELDADTTARQLWISERPVWVDYLKRKYASQFEAITDFWRPGLDYLFYCLDESQEAITHLDKSIIRALAPEMPGLALDENGTLRRVPLSGKAYFKAMEALTKAQEEVEAGLLLSLTRQEDILDA
>NZ_CP007620.1|WP_013972074.1|2595200_2596127_+|alpha/beta-fold-hydrolase
MHSLCSPKDHLLDLDGIEIAVRTWGAEDGIPVLALHGWLDNAASFERLAPMLDGCFVVAPDLVGHGRSDHRRHDSGYYLWEHAEDMLAVADSLGMVQFHVLAHGMGTGVASLLAAMTSGIASMTFLDGMGAPFTVAEDDRVQHLARAYRLKRMVQRSQLQGFAEPDVGRFEDLDTALAQRRERLDTELSEEAARLLALRDLLQLGEGYCWRHDPRLVLPEPMPLTEREACDLLSQIRCPLYLLFGRQGAFTGEAFTRRQAALPSQAKISWHPGGHHFHLDAPDRALVDQLLRILARHEGGVLQRLVNE
>NZ_CP007620.1|WP_013972075.1|2596483_2596909_+|VOC-family-protein
MRPFVIKHIDHLVLRVSDLERSVAFYTQLLGCTVSRVREDLGMVHLATGTAMIDLVTLDGPLGKPGGAAPGTEGRNLHHFCLRIEPFDEAALTAYLQAAGVEVEPAEKRYGAEGEGLSLYCYDPDGNQVELKGPVPATEAP
>NZ_CP007620.1|WP_013972076.1|2596905_2597685_+|alpha/beta-hydrolase
MSNLHTREHWIDTAQGKLFAQEWAPLQAQGAPIVLLHDSLGCVALWREFPAQLAQTTGHRVIAYDRLGFGRSDAHPGSLRLGFVEDEAQQGFTALREHFGIGDFIVFGHSVGGGMAVACAAAFASQCVGLITESAQAFVEARTLEGIRVADQQFAEPGQLQRLERYHGGKAEWVLRAWVDNWLSEHFADWSLDALLPQVRCPLLSLHGDNDEFGSPAHPERLVALAGGPGLMRLLQGCGHVPHREQAERVLEEVLQFLR
>NZ_CP007620.1|WP_013972077.1|2597901_2599578_+|MFS-transporter
MAVLDSTSTGSAPQRGITREERKVIFASSLGTVFEWYDFYLYGSLAAIIAKHFFAGVNETTSFIFALLAFAAGFAVRPFGAIVFGRLGDMIGRKYTFLITIVIMGLSTAVVGLLPSYATIGVAAPIILISLRLLQGLALGGEYGGAATYVAEHAPKGRRGFFTAWIQTTATLGLFLSLLVIMACRTAMGNEVFEAWGWRVPFLLSILLLAISVYIRMQLNESPVFMKMKAEGKASKAPLTESFARWDNLKVVVMALLGGTAGQAVVWYTGQFYALFFLLQMLKIEPQTANLLIAGSLLIGTPFFIFFGSLSDRIGRKKIIMAGCIIAALTYFPIFKALTQYGNPDVFVAQEQNPVVVMADPAQCAFQFDPVGKAKFTSSCDIAKSLLAKRAIPYTNEAAEPGSVAQIRIGERVLPSFDGRSLAAADFKAQSDAFTATLTGALKEAGYPEKADPAKIHYPMVLLLLTILVIYVTMVYGPIAAWLVELFPARIRYTSMSLPYHIGNGWFGGFLPTVAFAMVAATGDIYYGLWYPIVIAVMTAVLGIFFLPETKDRDINHT
>NZ_CP007620.1|WP_038409312.1|2599693_2600263_-|hypothetical-protein
MRHEFSEVLNDLVDYFLLGDIQLLERFKQQHELPDDLAHAFTHGDSGDQAVREGVVLPLAGADNLPYRILFTLDNHTPALREPGSRLKHRRNGYVLQVEHGALMLYTWRILQHFTPKTLGDLMARYQVPGRPIIELDNGWYDVEVLAGALVRDGLYEPAFEFVLKKRWSRGEAAGVDTGYAFGLRGYFD
>NZ_CP007620.1|WP_003259304.1|2600374_2601052_+|hypothetical-protein
MTQADSASLFPLAIGSHGERLARMTLKRPGEPGRDELEQFIHARFACAHHADVQHYLPELLGLHDSHGRLMAAAGIRLASSGPTFLERYLDEPLEAAVTRLSGSSVSRAQLVEVGNLAALSAGSARIMIIAVTWLLAARGLQWVAFTGAATLVNSFHRLGLVPTALAVADPGRLNGDADSWGSYYAQHPQVFVGNIGYGHAALARGGVFERLGLPASVQEAGHAA

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Crispr_ID: NZ_CP007620_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007620_3

2824221-2824309

Orphan

Consensus_repeat	Method
TCACGGTCGTTGGCAAAGTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007620_3

>merge|NZ_CP007620|3|2824221-2824309|CRISPRCasFinder
TCACGGTCGTTGGCAAAGTTGCCCCCAGAGCTCTGACCGCCTTTGCGACCTGCCTCCGATGCCTTCTCACGGTCATTGGCAAAGTTGCC

>NZ_CP007620|3|3|2824221-2824309|CRISPRCasFinder
TCACGGTCGTTGGCAAAGTTGCC	CCCAGAGCTCTGACCGCCTTTGCGACCTGCCTCCGATGCCTTC
TCACGGTCATTGGCAAAGTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007620.1\|WP_023661493.1\|2821631_2822465_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP007620.1\|WP_023660577.1\|2810237_2811503_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP007620.1\|WP_015270114.1\|2819739_2820708_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP007620.1\|WP_038409407.1\|2816059_2818603_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP007620.1\|WP_015270113.1\|2818625_2819540_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NZ_CP007620.1\|WP_023661498.1\|2826252_2827881_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP007620.1\|WP_023661500.1\|2829229_2830051_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|183004
NZ_CP007620.1\|WP_038409405.1\|2812718_2814224_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP007620.1\|WP_038409415.1\|2828006_2829245_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|225715
NZ_CP007620.1\|WP_038409403.1\|2811536_2812607_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP007620.1\|WP_015270586.1\|2815158_2815395_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_038409413.1\|2824566_2825892_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235713
NZ_CP007620.1\|WP_023661505.1\|2834703_2835312_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_023661501.1\|2830053_2830320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_038409419.1\|2832363_2833278_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP007620.1\|WP_038409409.1\|2820783_2821635_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP007620.1\|WP_038409417.1\|2830674_2831601_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
NZ_CP007620.1\|WP_038409421.1\|2833280_2834648_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP007620.1\|WP_023661494.1\|2822477_2824001_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|225533
NZ_CP007620.1\|WP_024086871.1\|2831628_2832177_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP007620.1\|WP_023661493.1\|2821631_2822465_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	6.92163e-171
NZ_CP007620.1\|WP_023660577.1\|2810237_2811503_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	9.91054e-21
NZ_CP007620.1\|WP_015270114.1\|2819739_2820708_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.12423e-109
NZ_CP007620.1\|WP_038409407.1\|2816059_2818603_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	7.01817e-100
NZ_CP007620.1\|WP_015270113.1\|2818625_2819540_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.05566e-71
NZ_CP007620.1\|WP_023661498.1\|2826252_2827881_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.64645e-31
NZ_CP007620.1\|WP_023661500.1\|2829229_2830051_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|183004	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr.	3.66945e-62
NZ_CP007620.1\|WP_038409405.1\|2812718_2814224_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.0245e-136
NZ_CP007620.1\|WP_038409415.1\|2828006_2829245_-\|MgtC/SapB-family-protein	gnl\|CDD\|225715	COG3174, COG3174, Predicted membrane protein [Function unknown].	2.38099e-39
NZ_CP007620.1\|WP_038409403.1\|2811536_2812607_-\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	4.31735e-10
NZ_CP007620.1\|WP_038409413.1\|2824566_2825892_-\|SDR-family-oxidoreductase	gnl\|CDD\|235713	PRK06139, PRK06139, SDR family oxidoreductase.	0
NZ_CP007620.1\|WP_038409419.1\|2832363_2833278_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	5.71001e-16
NZ_CP007620.1\|WP_038409409.1\|2820783_2821635_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	3.37524e-128
NZ_CP007620.1\|WP_038409417.1\|2830674_2831601_+\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	4.45253e-28
NZ_CP007620.1\|WP_038409421.1\|2833280_2834648_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	4.04079e-109
NZ_CP007620.1\|WP_023661494.1\|2822477_2824001_+\|histidine-ammonia-lyase	gnl\|CDD\|225533	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism].	0
NZ_CP007620.1\|WP_024086871.1\|2831628_2832177_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.03614e-08

>NZ_CP007620.1|WP_023661494.1|2822477_2824001_+|histidine-ammonia-lyase
MSFAERIIIADAPVRWQDVVAVARHGAKLELAPSAWARIENAQAIVQRIVSSGDRAYGVNTGLGALCNVSLQDEQLSQLSHNTLLSHACGVGTALSDEQTRAIMCAAIINFCQGRSGLQRKVVEALLTLLNQHITPQVPKQGSVGYLTHMAHISISLLGVGQVSYRGQIMPAQQALAEVGLAPVKLGAKDGLCLVNGTPCMTGLSCLSLDDATRLSQWADVISAMSFEALRGQLDAFDPEIIAMKPHPGMQRVGSNLRRLLDGSEIIASSQGIRTQDALSIRSIPQVHGAARDQLDHAARQIETELNSTTDNPMLLGTPESYRVVSQANPHGQSVAMAADLLAIAVAEIGAIAERRLDRLINPLVSGLPAFLVSQPGVNSGMMIVQYVAASLCAENRQLAQPAVVDNYVTSGLQEDHLSMGTNAGLKLHRALENCTQILAIEYLLAAQAFEFLKEQRFGAGTNVAWRLLRERVPAYAQDRWLAPDIASSASILKDPGLLGAAFPELL
>NZ_CP007620.1|WP_023661493.1|2821631_2822465_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MSAKQTMNKIEVKNVFKIFGARAEDALKLIRQQKAKDQVLAETGCVVGVNDLSLSIGSGEIFVIMGLSGSGKSTLVRHFNRLIDPTSGQILVDGEDILQYDMDALREFRRHKISMVFQSFGLLPHRSVLDNVAYGLKVRGESKARCAERALHWINTVGLKGYEKSYPHQLSGGMRQRVGLARALAADTDIILMDEAFSALDPLIRAEMQDQLLELQKTLHKTIVFITHDLDEAVRIGNRIAILKDGRLVQVGTPKEILYQPADEYVDRFVQRRVASL
>NZ_CP007620.1|WP_038409409.1|2820783_2821635_+|proline/glycine-betaine-ABC-transporter-permease
MFPKNFTFSIADWVNGWVDALVTNYGDVFRHISDTLLWAIVNLEGLLRAVPWWLMLAVVAGIAWHATRKVVTTAVIVGLLFLVGAVGLWDKLMQTLALMLVATLISVLVGIPLGVLSARNDRLRAVLMPLLDIMQTMPSFVYLIPVLMLFGLGKVPAIFATVIYAAPPLIRLTDLGIRQVDGEVMEAINAFGANRMQQLFGVQLPLALPSIMAGINQTTMMALSMVVIASMIGARGLGEDVLVGIQTLNVGRGLEAGLAIVILAVVIDRITQAYGRPRHGVGK
>NZ_CP007620.1|WP_015270114.1|2819739_2820708_+|ABC-transporter-substrate-binding-protein
MKITKALLTTTLSFGLLAAAGASQAAGWCESGKPVKFAGLNWESGMLLTDVMQFVLKNGYGCETDSLPGNSISMENALSSNDIQVFAEEWVGRSEVWNKAAAAGKVVGVGAPVVGAVEGWYVPRYVIEGDPKRKLEAKAPNLKTIADLGQYAQVFKDPEEPDKGRFYNCPAGWTCELDNSEMLKHYGLESSYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGLVDLVKLDEKPGVDKSLTIKVGLSKAFHEQAPELVAVLEKVNLPIDLLNQNLARMSKDRIESPELAKLFLKEHPEVWHSWVSEDAAKKVDAAL
>NZ_CP007620.1|WP_015270113.1|2818625_2819540_-|LysR-family-transcriptional-regulator
MKFTLRQLRYALAAAKHGNLTTAAMELHVSQPSISAAISELEEVLGQSIFVRQRGLGISLTPFGRTVMVQARRVLSEARTFAEINANAGECVGELVVGCFEDLAPYCLPQIVRRMQESCPRVTVDMREGSFDYVGKRLSEGAIELAITYDLGLPPNTQCTQLCQLTAQVLLAADHPLAKESRVSLKALSEYTLVVTDQVHSWQHVLDLFSFYDLSPAAVHRVRTFEMQRSLVANGFGVALIYTRPFGDRSYDGQALVCRPTEEKLPTHSIVLAHDQRYPLTPSAEAFKELAVAWFAERPSFASE
>NZ_CP007620.1|WP_038409407.1|2816059_2818603_+|EAL-domain-containing-protein
MDVLADNEMSTRSHVVGQLIVVFSLILLLALLLGLFSLYRLAEALDARQVQQSRFYAESAMAQLQKNDKTFLLTHANWQAAYDHLGGQVDAHWAYDEDNVGATLYTSDGYEGVYVLDDDGTRYAILDGKLSQQGLEHHTVSAGKILQEARQAAQHDQASSGYLVFRGQPAVYVAALIRPQTQPARPPGPTAVLVFIRVLSPQVLLPLGQAAGLSGLAVDDSADQRQGRGALPLEGSGHALTWDIPQPGTELTQTVIAPLAIAVLFIALSMALFARYAIRASTRIDRSHRALVTSRAALQSSEERFKAVAEAASDWIWETDVLLRLTYLSDRFTALTGHPVEAWRQRPITKLLSCDTSNLRTSLHSLAATGSSGTLRCQYQDHLGQQRICRIASRAIVAEGVCTGFRGTCSDITDEVAAHAQIQHLSLHDALTGLPNRNKLFRFLEQSTPGAQLALLMLDLDNFKPINDSLGHPAGDAVLLEVASRLGQATRDSDLVARLGGDEFIVVLTRPGDHEDMDRFCMRVIEAIKRPIQVEGHVVQVGVSLGVVLSAEYPGTPSDLIRHADVALYSAKQAGKNTWRFFSAQMNAALMEKRVLESELREGIPRGELVLHFQPRFKVDGVSIASAEALVRWQHPRLGLLRPDRFIPLAEESDLIVLLGNWVLHDACIKARGWPQAVMVSVNMSPAQFSRSDVVRDVGNALRATGLPAHRLELEITENVMLNDVEGALHTMLALKELGVRLNMDDFGTGYSSLGYLRTYPFDSIKIDKRFVQHLGKSGSDRSVVQAIINLGNAMGMTVTAEGVETAEQLALLSDDQCHEVQGFLLSKPLENEALMGMMKDQVSLAQ
>NZ_CP007620.1|WP_015270586.1|2815158_2815395_+|hypothetical-protein
MFAVRSGVDYEDALVHLSTLLKGAFATNLKALELAKGTCRDLLLSNDHGLDSAKAVVEALLDGVERQQLVGRKTVPGV
>NZ_CP007620.1|WP_038409405.1|2812718_2814224_-|PLP-dependent-aminotransferase-family-protein
MKSPTGLLLSAIELDRASAIPLYRQLYLQIRKQILNGRIQGGVRLPSTRTLSIELGLSRITILNAFDQLIAEGFLASRTGAGTYVGTEWENRSIEDEQPRQPPRLSELSQSMLSLRSDHFRGVSYADWDPATPTSFLPSHSTYEGFPQAIWRRLMNRHLLKPTKAILGYGELQGLQAFRTAIAEYVFDARGIDCNAGQVVIVSGAQQAFNLLGMLLLNPQDSVWMEDPGHIAARIALQAQGARIIPLRIDEQGIDVQQGLAECPDARLVFCTPSRQHPLGVTLSYVRRQALIDWAAKHQSWIIEDDCDSEFRYSGRLLPALYAMDQMARVIYVGTFSKVLFPSLRLGYVILPQALVEPFCTLRAVMDRSPPTLLQATTADFMSEGHFLGHIRRMRALYKARQQALIEQLEKQIGSFFRITPTDAGMHLIAWLPPELSDTEIARQLARHNIHTYALSDYRIKRDLPPALLIGFAGTPEKQARERVEELAQALHTLGYLPPTT
>NZ_CP007620.1|WP_038409403.1|2811536_2812607_-|TIM-barrel-protein
MNNKIQERFNALLSHKVVEHVAAPVLTEALAQRLLERLGQLRLFAHAYPLLTNLTHGRVTPADMLDFAYRHELQGLSLHLLDGEENSLSQMSPEQLQVFASKAKALGLDVHLEISSTLKKDVDQVIAIANALGVRNIRVYSRYEGPLSRVMDVIETDLHYLAQQADANDLYFDFEQHEELKSSEIAQLLNRVNHPRLHALFDFGNMINACEQPLQALHNLAPHIRQAHLKGVRIVPEQNGFGHYGVLQGSDEDDLPSARMLFELLMLGEATPQVIAFILEQENHYVAPAFRQSLEAADPFIAYREMSETPLPKGYSLERMLADEHRWANNQVAYVRGLLGELRTLAELTLAAPSNA
>NZ_CP007620.1|WP_023660577.1|2810237_2811503_-|MFS-transporter
MTTQNKAKWLRFLILILGGGTIYKLANLKDAFYVPMQEFMGLSHTEIGMLLSANAIIATALFVVGGLLADRYDTRKLIPLGLIGTGSLGLYLATFPPFSSLLIVFSLLAVCADCLFWPSLLKAIRNLGDDQEQGRLFGLLEGGRGVVDTLVAFSALGVFVAMGSGEAGLKSAILFYSVIDILAGTLTWVLLKGGNAQSATKPKNGLANLMEAIKVPGIWLVSLNVFMVYIVYCGLTYFIPYLKEMYGLPVALVGAYGIINQYFLKILGGPAGGFIADKQFKSTSRYLKWAFLALLPLMAVIMLIPKSPGFIYAGMAATLSFALIVFSMRGVFWAPMGEVGIPQHITGSAFGIGCLIGYAPGMFAYVIYGAILDHFPGQQGYNYVFILMSVLAIAGFMVSSLLYQAVRKKSVLSGGADAVQA
>NZ_CP007620.1|WP_038409413.1|2824566_2825892_-|SDR-family-oxidoreductase
MIDQATGMKPGERYRVENVERAHQFPGFFQDGKYYLGPELLTAVGWIEGTRFIYDSVDAEGEPVFPNREAGTIEGLRLTLVDGTALELSRIEASETIAPLDDHKKSGTEQEAPRGGVQSRGPLRGKVVVITGASSGIGRAAAHAFACKGARLVLAARDEEALFDVLDECTDCGTDAIAITTDVTRNDQVQALAAQAAEFGHGRIDIWINNAGVGAVGNFEETPLEAHEQVIQTDLMGYLRGAFVALPLFKAQGSGILINTLSLGSWVAQPYAAAYSASKFGLRGLTEALRGELTEFPDIHVCDIYPAVMDTPGFRDGGNYTGHALTPPGPVYDPELVAKAMVACAISPRAHTTVGATARLAHLASYLVPGLPLLSGWLTRRGINRSPKAETSSGNLFEPPSGRRSVDGGWRKPKDKTPLLIGAAALGMIVGFAITHSRRRS
>NZ_CP007620.1|WP_023661498.1|2826252_2827881_+|mechanosensitive-ion-channel-family-protein
MKRLYCLLLILFTLQPLAGHGIDVAGSATDGVPGEPAELTIANRSIFIFHATLLGETPAARVQRATAVIEEALRGTDELKVSVDPILNSHLVLLGERRAFIIAPQDLGLAGGDTREAAEQAAAMLRLVVDETGQARSLRFLLKAAGYSVLATLIYVVLIKGTNLARRRLQGLLPQLMRERARQIRLGQMPLLDMQLVYTVIERLLRLLHWGVVLLLSYQWLSFVLSQFPYTRPWGESLNVHLIDLLRYLLDGILQAIPGIAVAIIIFFIARGISGFSRRLLERMARPGTLKWLTEETLQPTTRLTSLAIWLFALVMAYPYLPGSGTDAFKGLSVLLGLMISLGASSIVGQAAAGLILTYSRTLKAGEYVRVGDHEGTVTEVGMFNTTIRTGLGEVLTLPNSMITGSVTRNFSRVVQGQGYIVDTVVTIGYDTPWRQVEAMLVEAAKRTDGILEKPRPQVFQTGLSDFYPEYRLVAQAVPSEPRPRAELLSLLHGNIQDVFNEYGVQIMSPHYLGDPAQEKWVPHERWFTAPARKPDVGQQGE
>NZ_CP007620.1|WP_038409415.1|2828006_2829245_-|MgtC/SapB-family-protein
MLDAVNVGHGAIALGIGMLVGLERERKKGRNEDHAAAGLRTFAITALLGYVSMLLAGPVLVGVASLGLVLMLCMHYRKHADKDPEVTSEIALLLVLTLGALSLDEPELATAVGVVLTVLLALRRELHHSVLQQLSEEELRDGLMLLTVALVVLPLTPDRFMGPYGALNPRTICTLVVLLMTVGALGHIAMRLVGPRYGLPLSAIASGFASGTATIALLAHEARRQVTAVRPLAAAAVLSNLASIAQFALVLGIVDRHLLKPFVASIGLGTVGTVVYGTLLLAPWRSDQGTSTAHQGDGAFDLFTALIITVALTGIALFCAFLLHHLGHNGVSIAAFISGLADAHVATASVASLVVAGRLGVDGLVVPGLLALTGNTLTKCILSLGSGGCSFGRYLVPGQLVILGAMWLGLLI
>NZ_CP007620.1|WP_023661500.1|2829229_2830051_-|helix-turn-helix-domain-containing-protein
MTGLLKVTLLDQPAASSPATPIHLKPLTTLCTECRVSGLCLPTGLPVHDNSCLGALIGPRMRIRKGAALFNANDPLTTLYAVRCGSFKTSLNSAEGQGVVINFWMPGDVLGLDAIATEHHVCDAIALEDSEVCPVPYRRLQALARDFPVLQQSLNRLMSREIVREHERVLMLCNLTAEQRLASFLVGLSQRFVSRGYSAHGFMLRMSREDMASYLGLRLETVCRSVARLRALGIVSMRGRLVEILDLPALIALEQGSAEVTPKDTPKAPCSTR
>NZ_CP007620.1|WP_023661501.1|2830053_2830320_-|hypothetical-protein
MLLEASMNIYVENSPQQNRWWVRMDDCRVSFVTSAEAQAFVDRLNARLNAPHSRDMLADWSPRPGMGSVGKTNAGMAAQAGLRCAKEA
>NZ_CP007620.1|WP_038409417.1|2830674_2831601_+|universal-stress-protein
MDNPQRLLLIASPLMRRTPVYDRAAALAKAKGMALHIVAFDYLEGLATAGLVNDKALAVMREGYVQQHRGWLETQALSMRRNGVTVTTEVVWVQHPLDEILVHLREQPFAMLIKAFEHEPWWARAMFTSLDIQLLRETRIPLHLVHQASHALPRKILAAVDLSRPEDQFEGFNDQIISEALKLALQCNAQIELLYAYDLGSMYLDSGGSREHSFLFDSNLAQTLHEAQSEAFQALAERNGIAAEHRHLRLGDPAKVLALFMENNDIDVLVMGSYHHRGIGWFIGSTAERVLHRLSSSVLVISPEHSQG
>NZ_CP007620.1|WP_024086871.1|2831628_2832177_-|GNAT-family-N-acetyltransferase
MNRQQTEKPDACEYWIEKLSDGSAVLIRPLREEDRERDRRFLSTIAYEARRFRFIAGLSGGVPSLDAQHMPVDHHQCEAYVALVHADGQLRQIGVSRYASVPGSLQCECAVAVNEEWQRKGLGRLLMQHLIAAAKRNGFHCMISRDLANNYAMHRLTKTLGFTSRYLGGDVSEILHELDLHA
>NZ_CP007620.1|WP_038409419.1|2832363_2833278_+|universal-stress-protein
MGQYRQLLVLLTELDPHSAALRRALALAHVSGASVHVLGLFEPTQEHLLREERLNEADIRRQFDHYGLRLAGLVERHRGSGIALTVDTLQADDIRSQAIDYISELHPDMVIKDSEVTPTMVRLFSTPLDCALMRGLKGITHFVPEAAVSLPRRVLVAVDTSFSETPEDQASFNRRLIRAAQALALQCDAQLHLLSAYNLAGVFASDMNVTQAWIDEMRNALKEPFDTLADAEGVPADCRHFLEGGPVQVIREQVAALDIDAVVMGVVQPKGLDKLLGDTTERIVSRPPCSVLAVHPQAAETLEP
>NZ_CP007620.1|WP_038409421.1|2833280_2834648_+|MBL-fold-metallo-hydrolase
MQLTFLGGTGTVTGSKFLLTRDSSRVLIDCGLFQGYKQLRLRNWEPLSAALRALDAVVLTHAHLDHSGYLPVLAKEGYTGPIYATPATCALAEILLLDSARLQEEQAEHANRHGYSKHSPARPLYTEQDAKRALALLRPVELRHPTMIAPGMELLLRTAGHILGAATVQIKVDGQTLVFSGDLGRPQDPIMRAPELIRTADVLLVESTYGDRQHPSESTEQFLAQVINQTLLRHGITLVPSFAVGRAQLLMYYLYKLKRDGLIPDIPVYLNSPMATDATTLYQQFRSEHRLTLAECAEMCRGTHIIRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSILFSGFQAGGTRGADIVAGARSVRLHGEDVPIRAQVHAMDNLSAHADADEIMEWLRGFARPPRQTYVIHGEPHAADTLRRRISIELGWQVYVPEYHETVAIDPVR
>NZ_CP007620.1|WP_023661505.1|2834703_2835312_+|hypothetical-protein
MHRPRGSLGFIVAIFALLVVIAAYRSLNPNWRLPMQHPLMLLALLALCVALGWVVQRGVKRTVGKTIFNGQATGWQARLAFLRSVTQESNVLLGMLLFLALLAGGTVWLAGRSVDRIVENCTDSLQARVNTPEDEKLTALVGKPVCTCLAQTFLDRNGVIRLALFDTPMREVSAYKALTADDEQRCLEQFDLLPEEARATLP

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Crispr_ID: NZ_CP007620_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007620_4

4608709-4608819

Orphan

Consensus_repeat	Method
GGCCCTTCGCGGGTAAACCCGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007620_4

>merge|NZ_CP007620|4|4608709-4608819|CRISPRCasFinder
GGCCCTTCGCGGGTAAACCCGCTCCCACAGGTGCGGCGCATGGTTCGAGCCTGCGCAGTGCCTATGGATGAGGGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCC

>NZ_CP007620|4|4|4608709-4608819|CRISPRCasFinder
GGCCCTTCGCGGGTAAACCCGCTCC	CACAGGTGCGGCGCATGGTTCGAGCCTGCGCAGTGCCTATGGATGAGGGTTGCCTGTGCTG
GCCTCTTCGCGGGTAAACCCGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007620.1\|WP_038410057.1\|4620438_4621224_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP007620.1\|WP_080708209.1\|4600363_4601422_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP007620.1\|WP_038410047.1\|4604450_4604810_+\|flagellar-protein-FlaG	unknown	unknown	gnl\|CDD\|377090
NZ_CP007620.1\|WP_038410054.1\|4613770_4615336_-\|flagellar-hook-associated-protein-3	unknown	unknown	gnl\|CDD\|171679
NZ_CP007620.1\|WP_038410043.1\|4597502_4598858_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP007620.1\|WP_038410050.1\|4606748_4607042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007620.1\|WP_038410051.1\|4607211_4608687_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP007620.1\|WP_013973606.1\|4596948_4597281_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP007620.1\|WP_013973619.1\|4618570_4619686_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP007620.1\|WP_038410052.1\|4610526_4611948_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP007620.1\|WP_038410056.1\|4619692_4620388_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP007620.1\|WP_038410058.1\|4621271_4622012_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP007620.1\|WP_038410048.1\|4604893_4606252_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|311255
NZ_CP007620.1\|WP_038410044.1\|4598857_4600075_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP007620.1\|WP_013973618.1\|4617404_4618559_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP007620.1\|WP_038410055.1\|4615349_4617392_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|235558
NZ_CP007620.1\|WP_038410053.1\|4612434_4613364_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|238426
NZ_CP007620.1\|WP_080708209.1\|4609074_4610133_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP007620.1\|WP_038410049.1\|4606334_4606730_+\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NZ_CP007620.1\|WP_038410046.1\|4602261_4604376_+\|flagellin	unknown	unknown	gnl\|CDD\|236344

Protein	Function_ID	Function_description	E-value
NZ_CP007620.1\|WP_038410057.1\|4620438_4621224_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	6.85695e-167
NZ_CP007620.1\|WP_080708209.1\|4600363_4601422_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.78968e-21
NZ_CP007620.1\|WP_038410047.1\|4604450_4604810_+\|flagellar-protein-FlaG	gnl\|CDD\|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	6.12673e-22
NZ_CP007620.1\|WP_038410054.1\|4613770_4615336_-\|flagellar-hook-associated-protein-3	gnl\|CDD\|171679	PRK12717, flgL, flagellar hook-associated protein 3.	0
NZ_CP007620.1\|WP_038410043.1\|4597502_4598858_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP007620.1\|WP_080708209.1\|4609074_4610133_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.78968e-21
NZ_CP007620.1\|WP_038410051.1\|4607211_4608687_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.98174e-159
NZ_CP007620.1\|WP_013973606.1\|4596948_4597281_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	7.91567e-41
NZ_CP007620.1\|WP_013973619.1\|4618570_4619686_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP007620.1\|WP_038410056.1\|4619692_4620388_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	4.71049e-95
NZ_CP007620.1\|WP_038410058.1\|4621271_4622012_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	4.7785e-150
NZ_CP007620.1\|WP_038410048.1\|4604893_4606252_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|311255	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus. The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.	2.08469e-59
NZ_CP007620.1\|WP_038410044.1\|4598857_4600075_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	6.81219e-52
NZ_CP007620.1\|WP_013973618.1\|4617404_4618559_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	9.91246e-149
NZ_CP007620.1\|WP_038410055.1\|4615349_4617392_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|235558	PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP007620.1\|WP_038410053.1\|4612434_4613364_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|238426	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.	9.28901e-96
NZ_CP007620.1\|WP_038410052.1\|4610526_4611948_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.114e-180
NZ_CP007620.1\|WP_038410049.1\|4606334_4606730_+\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	2.27784e-60
NZ_CP007620.1\|WP_038410046.1\|4602261_4604376_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	2.05037e-70

>NZ_CP007620.1|WP_038410051.1|4607211_4608687_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MWRETKILLIDDDSARRRDLAVVLNFLGEENLACSSQEWQQMVEPLSSSREVLCVLIGTVNAPGNLLGLVKTVAGWDEFLPMLLLGEISSAEFPEDLRRRVLSNLEVPPSYSQLLDSLHRAQVYREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEEGTFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGVSELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHAPNFGNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMSRQGGEEQAED
>NZ_CP007620.1|WP_038410050.1|4606748_4607042_+|hypothetical-protein
MSALQRIEDTRLALSEALQARDWGAIGALDLACREQMEDLLQSELEDEAAVRSNLEALMAVYRQLIDVASDERQSLVAQMTNINQAKQATKVYHLFS
>NZ_CP007620.1|WP_038410049.1|4606334_4606730_+|flagellar-export-chaperone-FliS
MHPMRALRQYQKVNSHAQISEATPHRLVQLLMEGSLDRMAQAKGAIARGDVAQKGVMLGKAIDIIGGLREGLDKEKTDNPDELDRLDSLYDYMARRLTQANLHSDPAMIDEVAQLMITVKSGWDAIASAEQ
>NZ_CP007620.1|WP_038410048.1|4604893_4606252_+|flagellar-filament-capping-protein-FliD
MTSTTVSGIGSGVDTQSIVKALADAEKAPKQQQITAQQKTTTTQVSAVGMIKNALDTFRSAIAKLNTSTSFTGLAGTSSDEKVAKATVTASASAGNYALEVTQLATSSKIITDVFAGGASSVVNNSGDPQALTISQSGADYDVTIPDGATLQQVRDLINKQLGSQGINANILTDANGSRLVMSSSTTGEGSDITLSGDSTLVQNATPGEPAQNAKYKIDGLELESKSNTVTGAISGVNFELLAEGKSRLSVATNTSTLKTSVQSFVSAYNALITAINTQTKVTATGDASTTTAGALTGDATMRALVSTVRNELVKSTGSGSISMLSQMGINTDQQTGLLVLDDTKWDKAVAKGAADIAAVFTGDKGLIKRLTVATDAYTGTTGILATRTKTLNDNLTELTKQQEALDRRIETLRATLTAKYNAMDTLVAKLNATSSSVMTTLNAMNKANNDD
>NZ_CP007620.1|WP_038410047.1|4604450_4604810_+|flagellar-protein-FlaG
MDMSVKLSSVLPAPAAQEAKIQEAKSAHSSSKLTVGLPDAPTKEIQRPELEKAVSDIQEYVKASQRQLAFSVDDSTGTLVVKVIATGSGEVIRQLPSEAALSLARSLAEGNGFLLDDNV
>NZ_CP007620.1|WP_038410046.1|4602261_4604376_+|flagellin
MALTVNTNITSMSVQKNLNKSSDALGTTMGRLSSGLKINSAKDDAAGLQISNRLTTQIKGLSVAVKNANDGISIAQTAEGAMATSGNIMQRMRELALQSANGSNSDDDRASMQQEFTALSGELTRIANTTTFGGRNLLDGTFSGSSFQVGANSNESISFGMKDVSATAMKGNYNEASVAGGVATLQASVTGAAGKFGTDATGANFATATGKTSATVFADPAVGTSGDLVLNVGTTKTTITLATTDTLNGFGATQAAKDASSILAKINAQTANTGITASIDSATGGLKLTGTQAFTVDATDTTAGVATGLGLATGGGNQLTKTGTENLRDGKLAADGTLILGDTTINLTTADTLSSVVNKVNGQSGATGVSASVDSATGQLKLSSAAGFKLSGTAIANLGLTDAVTAAATNGGIVAVAPQSTGLSADTDISINGKGFSFKAGDDLDSIVANINNNGAGAVGSGTALTGVTAKNDNGRLVLTSANGQDIKLDNGSGVAGQGALAAVGLNSGTTKAGLVADTSISLNGVEVKFKKGDDMDTIAASINAASTGVNASVVVKDGSSTLSLFADQDINVADGSNGTGLAALGLTAVAGKTSAVEMESTVSNLNILDAQSAQQAIQVLDGAMQSLDSQRSQLGAVQNRFDSTVANLQSISENSTAARSRIQDADFAAETAELSKQQTLQQASTAILSQANQLPSSVLKLLG
>NZ_CP007620.1|WP_080708209.1|4600363_4601422_+|IS110-family-transposase
MELCTTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPATVTVLRECGPGAQAWARLLQAKGNAVRILPAQRVAEHRSGAKNDRNDTHAILRAGRDTSIASISIKSTTALAIQALHRIRRGNIKRHTALGNQIRGLLLEHGVSMPQGDAAISKHVPRSLEDASLPLPDLLRELLDELLTDWLSLGERIAGLSRRLETTAQQDKVAQRLITIRGVGPIIATAIVAKQTEPSRFASGRMYSAFFGIVPDQHSSGNKVRLGRMSKRGDGYIRSLMIQGAHAVLSQLRPDSDQPDDRRLLRWLSRLGRKEAAIRLANRNLRIIWALLQNDQVYQHKPNSNSEAAMSL
>NZ_CP007620.1|WP_038410044.1|4598857_4600075_-|PAS-domain-containing-protein
MPQAAHVSRAPNPQGHAPVEQESRQGIDQAFALFNQVSSQLSQSYSLLEARVSELKGELAVVSAQRIDELSEKERLANRLQNLLALLPGGVIVIDGQGLVREANPAACELLGEPLIGQLWRQVIARSFAPRKDDGHEVSLRDGRRLSIATRSLDAEPGQLVLLNDLTETRRLQDQLARHERLSSLGRMVASLAHQIRTPLSAAMLYASHLADPEQDLSTETRQRFAGTLKERLHELEHQVRDMLVFARGELPLGDRLTPKALFQALQQAAQAHVQGHTVRWQCDSHLGELLCNRDTLVGALLNLIENALQASDGPARLKVHLFRRGRTLHLCVSDAGSGIDADLLGRLGEPFLTTKAAGTGLGLAVVKAVVRAHQGALCLRSKVGRGTCVRVELPLIDGQLAEVV
>NZ_CP007620.1|WP_038410043.1|4597502_4598858_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLDDAFSLVVSDVNMPGMDGHQLLGQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLSLVERHATGRVTGEEGPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPLALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLACRPLRERPGDILQLAERLLARNAVKMKHAPVRLSPQALACLQAYAWPGNVRELDNALQRALILQQGGVIEAADFCLAGAIPLSAGIEPSSEVVAEPGGLGDDMRRHEYQMIIDTLRAERGRRKEAAKRLGISPRTLRYKLAQMRDAGFDVEASLFG
>NZ_CP007620.1|WP_013973606.1|4596948_4597281_-|flagellar-hook-basal-body-complex-protein-FliE
MSQGVEFNRLMLDMRAMQADAMSLPKVAAAPELAPGQSTFADMLGQAIGKVHETQQASTQLANAFEIGKSGVDLTDVMIASQKASVSMQALTQVRNKLVQAYQDIMQMPV
>NZ_CP007620.1|WP_080708209.1|4609074_4610133_-|IS110-family-transposase
MELCTTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPATVTVLRECGPGAQAWARLLQAKGNAVRILPAQRVAEHRSGAKNDRNDTHAILRAGRDTSIASISIKSTTALAIQALHRIRRGNIKRHTALGNQIRGLLLEHGVSMPQGDAAISKHVPRSLEDASLPLPDLLRELLDELLTDWLSLGERIAGLSRRLETTAQQDKVAQRLITIRGVGPIIATAIVAKQTEPSRFASGRMYSAFFGIVPDQHSSGNKVRLGRMSKRGDGYIRSLMIQGAHAVLSQLRPDSDQPDDRRLLRWLSRLGRKEAAIRLANRNLRIIWALLQNDQVYQHKPNSNSEAAMSL
>NZ_CP007620.1|WP_038410052.1|4610526_4611948_-|group-II-intron-reverse-transcriptase/maturase
MPPVGVRVSSNAEKQEFLRGRTVTPSSGQNPRATAGSAQASTASVTWTNAESDTLMERVLAPANLKRAYQRVVSNKGAPGADGMTVADLAGYVKQYWPILKHRLLAGEYHPQAVRAVEISKPQGGTRQLGIPGVVDRLIQQALHQQLTPIFDPLFSDYSYGFRPGKSAHQAVEMARAHVASGYRWCVELDLEKFFDRINHDILMACIERRVEDKCMLRLIRRYLEAGVMSGGVVSPRQEGTPQGGPLSPLLSNILLDEFDRELERRGHRFVRYADDANIYVRSQRAGERVLASIERFLKRRLKLTVNRNKSQVARAWSCDYLGYGMSRHRQPRLRVAVMSLKRLRDRLRELLRGARGCKMGNIIERLNPVLRGWAGYFKLSKSKRPLEELDGWIRHKLRCVIWRQWKQPSTRARNLMRLGLSEERACRSASNGRGPWWNSGAPHVNQALPKKLWDRLGLVSILDTINRFSRIT
>NZ_CP007620.1|WP_038410053.1|4612434_4613364_-|ketoacyl-ACP-synthase-III
MIGIKSIASYVPTAGLDNYVQGAKFGKDEEFMFGKIGASFLPRKAEEQETSDLCVEAAQALFASNPDLDPQSIDALIVVTQNGDEEGLPHTAAIVQSKLGLSTRVAAFDVSLGCSGYVYGLYAIKGFMEAAGLKNGLLITADPYSKIVDPEDRNTTMLFGDAATATWMGEDAVWQLGEARFGTDGSGAEHLKVSDGKFFMNGRQVFNFALVKVPAHLHELLAASGLKSSDIDAFCIHQGSAAIVDAVARRFEENNPEKFVKDMLETGNTVSSSVPLLLQKHMLDGSWKRVAISGFGVGLSWGSAILYRD
>NZ_CP007620.1|WP_038410054.1|4613770_4615336_-|flagellar-hook-associated-protein-3
MRISTAQFYETSATSYSQNYSNLAKITEQVTSKSRIQSAGDDPVGAARLLVLQQQSALLDQYSGNMTTVKNALLQEESVLSTINDALQRASELALQAGNGGLSDADRTSIASEIKEIEANVFGLLNSRDANGDYMFGGSKSSTPPYVRNADGTYSYQGDQTQLSLQVSDTLRLATNDTGYSIFDQATNNSRTQSNLVAPSPDDGKVLLSGGLLTSATTYSNQFAAGQPYTVTFTSATEYNVKDAAGNDITTETAGKGKFDVNAEGGKMISLRGVDFEINLKLAEGDDADAVVAGHVFTLEAKPDTLTATRSAGNPSTAQVTGTSITDPDGYRSTFPSNGAVIRFTSDTEYSLYAQPYTADSKPIATGTVGAGNAVTVAGVTYQFDSAPAQGDQFSVNANTHRSQNVLDTLGQLRSALEKPVDSPEAQAALKTATDSAISNLASARDRIDITRGSIGARANSLEIQAQENESLGLANKSTQSAIGDTDMASATIQLTLQQAMLEASQLAFARISQLSLFDKI
>NZ_CP007620.1|WP_038410055.1|4615349_4617392_-|flagellar-hook-associated-protein-FlgK
MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQAIQAAGPSHNIGAGFLGTGTTLADVRRIYSSYLDNQLQTATSLQADAVAFQDQITSVDKLLADRDTGISSVLTAFFSALQTAAAKPGDVASRQLLLTQAQTLSNRFNAVSSQLTQQNATINTQLDTMAGQVNKLTASIAEYNKQIAAASGTGSTPNSLLDARSEAVRQLNDLVGVTVQERDGNYDVYLGSGQSLVTGNKANTLSVEPGVADKSQASLRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLMPSMNELGRVALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSSGSGNLNVTIADSGKLTTYDYEVKFTSANQYSVRRSDGTDMGTFDLSADPAPVIDGFSLSLNGGGLAAGDSFKVIPTRSAAGSITTTLTDANKLAFAGPISAAAGSGNSGTGTITQPTLGESLDIYGGADTALVQQAIRDSMPVRVVFDAASGGSQGYKLYDAKGTQIGTGSVVPGQDNKLSIAVPMRDASGNPILDSSGNPRTFAVETTIGGSPATNDSFTLSFNADGKADNRNANALLDLQTKSTVGTNSGTGTSFTSAYASLVERVGAKASQAAIDTTATQAVFKSAAESRSAVSGVNLDDEAASLVKFQHYYTASSQIIKAAQETFSTLINAL
>NZ_CP007620.1|WP_013973618.1|4617404_4618559_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNSKSLVSGSVDSGAYTDLNRLSSLKVGDRDSEANVRKVAQEFESLFISEMLKASRKASDVLADDNPMNTETVKQYRDMYDQQLAVSMSREGGGIGLQDVLVRQLTKGRSASINTSPFPRADASGPALWGSKVAEPAHAADSASGRNDVAALNARRLALPSKLTDRLLAGIVPSAATANSAAVPARDGQQVAQAFAVPDNGLRILGRAVAQPPLAPNKAFADSDEFVATMLPMAEQAAKRIGIDPRYLVAQAALETGWGKSVMRNTDGSSSHNLFGIKATGNWQGEQARAITSEFRDGQFVKETAAFRSYDSYQDSFHDLVSLLQSNSRYQDALNSADNPEQFARELQKAGYATDPGYAKKIISIARQMQATPQYAMAGRTTNL
>NZ_CP007620.1|WP_013973619.1|4618570_4619686_-|flagellar-basal-body-P-ring-protein-FlgI
MTMFNVRQLIAATLLLSCAFGAQAERLKDIASISGVRSNQLIGYGLVVGLNGTGDQTTQTPFTLQTFNNMLSQFGIKVPAGSGNVQLKNVAAVSVHADLPAFAKPGQVVDITVSSIGNSKSLRGGSLLMTPLKGIDGNVYAVAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPGGATVERAVPSGFNQGNSLTLNLNRPDFTTAKRIVDKVNDLLGPGVAQAVDGGSVRVTAPMDPSQRVDYLSILENLEIDPGQAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGPFSNGQTAVVPRSRVNAEQEAKPMFKFGPGTTLDEIVRAVNQVGAAPSDLMAILEALKQAGALQADLIVI
>NZ_CP007620.1|WP_038410056.1|4619692_4620388_-|flagellar-basal-body-L-ring-protein-FlgH
MNRLLSVFALGGAVLLAGCVAPTPKPNDPYYAPVLPRTPLPAAANNGSIYQAGFEQNLYSDRKAFRVGDIITITLNERTSASKNAGSQIQKNSNANIGLTSLFGSTPSTNNPFGGGDLSLEAGYSGERATKGDSKATQGNTLTGSITVTVAEVLPNGIIAVRGEKWLTLNTGEELVRIAGMIRADDIATDNTVPSTRVADARITYSGTGSFADASQPGWLDRFFISPLWPF
>NZ_CP007620.1|WP_038410057.1|4620438_4621224_-|flagellar-basal-body-rod-protein-FlgG
MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTANGYALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLSFVTQQL
>NZ_CP007620.1|WP_038410058.1|4621271_4622012_-|flagellar-basal-body-rod-protein-FlgF
MDKLLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPSRAFAMTERPATDFSEGPMVETGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRAGNGMPVIGNGGPIAIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTQGLTKGLDGLIHTRDGQPAAADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNAAKEGDEAMARVLQIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

272478 : 333274

Bacillus_phage(28.57%)

holin,bacteriocin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003257436.1\|272478_272961_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_013970457.1\|273070_273472_+	RNA-binding protein S4	NA	NA	NA	NA
WP_023662013.1\|273601_274396_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_013970459.1\|274517_275417_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_013970460.1\|275596_277138_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	6.6e-126	46.9
WP_013970461.1\|277352_277793_+	thioesterase	NA	NA	NA	NA
WP_013970462.1\|277848_278331_-	hypothetical protein	NA	NA	NA	NA
WP_013970464.1\|281000_281831_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_013970465.1\|282016_282457_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_003257447.1\|282568_283231_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_013970466.1\|283295_283862_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_024087995.1\|283858_284677_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_013970468.1\|284849_285305_-	thioesterase	NA	NA	NA	NA
WP_013970469.1\|285304_286711_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.9e-08	28.7
WP_024087997.1\|286707_288522_-	sensor histidine kinase	NA	NA	NA	NA
WP_013970471.1\|288564_289110_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	4.6e-50	53.9
WP_013970472.1\|289389_290496_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	4.3e-103	50.6
WP_013970473.1\|291010_293089_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_013970474.1\|293594_294914_+	OprD family porin	NA	NA	NA	NA
WP_013970475.1\|295031_296699_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_013970476.1\|296814_298203_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_023661060.1\|298204_298924_-	response regulator	W8CYM9	Bacillus_phage	1.1e-30	34.1
WP_023661061.1\|299064_301362_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_013970481.1\|301837_302044_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_003257464.1\|302370_302619_-	hypothetical protein	NA	NA	NA	NA
WP_013970482.1\|303182_303458_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_024087998.1\|303811_305017_-	methyltransferase	NA	NA	NA	NA
WP_013970484.1\|305141_305831_-	ABC transporter permease	NA	NA	NA	NA
WP_013970485.1\|305830_306523_-	ABC transporter permease	NA	NA	NA	NA
WP_013970486.1\|306577_307330_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003257472.1\|307341_308115_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_013970487.1\|308780_310166_+	GABA permease	NA	NA	NA	NA
WP_013970488.1\|310347_310791_-	hypothetical protein	NA	NA	NA	NA
WP_162097111.1\|310848_311721_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_003257478.1\|312202_312475_-	oxidative damage protection protein	NA	NA	NA	NA
WP_013970490.1\|312471_313539_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_023661917.1\|313535_315782_-	AsmA family protein	NA	NA	NA	NA
WP_013970492.1\|316087_317749_+	OFA family MFS transporter	NA	NA	NA	NA
WP_003255736.1\|317987_318581_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_013970493.1\|318581_319220_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003257483.1\|319220_319481_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_003257484.1\|319508_320246_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_013970495.1\|320256_321027_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003257485.1\|321144_322323_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	36.2
WP_013970496.1\|322319_323165_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_003257486.1\|323249_324197_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013970497.1\|324650_326027_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_015268639.1\|326484_327591_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_003257487.1\|327710_327968_-	hypothetical protein	NA	NA	NA	NA
WP_013970499.1\|328388_328865_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_013970500.1\|328875_329841_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_024088001.1\|329859_330744_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_013970502.1\|330865_331810_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024088002.1\|331957_332902_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_038408553.1\|333022_333274_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_2

1034674 : 1042453

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013971076.1\|1034674_1035529_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.2e-09	32.8
WP_015269060.1\|1035531_1035996_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1036008_1036317_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_015269061.1\|1036396_1037890_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003257916.1\|1038065_1038791_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-23	27.0
WP_015269063.1\|1038791_1039316_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003257918.1\|1039302_1039875_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_024086339.1\|1039883_1040408_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	3.1e-27	47.8
WP_003257920.1\|1040420_1041395_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.6e-37	33.1
WP_012270662.1\|1041643_1042453_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5

DBSCAN-SWA_3

1617056 : 1710576

107

Pseudomonas_phage(37.7%)

portal,protease,integrase,capsid,holin,head,terminase,plate,tail,tRNA

attL 1637204:1637237|attR 1706993:1707026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038408813.1\|1617056_1618409_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_013971256.1\|1618483_1620844_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_015269197.1\|1620888_1621392_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_013971258.1\|1621393_1622449_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004375427.1\|1622563_1623004_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_013971259.1\|1623000_1623777_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_013971260.1\|1623778_1624906_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_013971261.1\|1624907_1625531_+	ribonuclease HII	R4THQ2	Phaeocystis_globosa_virus	5.0e-16	32.9
WP_013971262.1\|1625782_1629307_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	2.6e-194	35.9
WP_013971263.1\|1629413_1630361_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_013971264.1\|1630496_1631780_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_004375437.1\|1632049_1633678_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-157	52.9
WP_013971265.1\|1633681_1634527_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.1e-50	42.0
WP_013971266.1\|1634680_1635970_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	7.4e-139	59.4
WP_004375443.1\|1636137_1636419_+	cell division protein FtsB	NA	NA	NA	NA
WP_013971268.1\|1636415_1637123_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
1637204:1637237	attL	NA	NA	NA	NA
WP_013971269.1\|1637255_1638152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013971270.1\|1638259_1639372_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.0e-33	29.5
WP_013971271.1\|1639380_1640235_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_013971272.1\|1640411_1640885_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_013971273.1\|1640881_1641940_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_013971274.1\|1641927_1642677_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.4e-67	52.2
WP_015269209.1\|1642712_1643351_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-40	51.2
WP_023662488.1\|1643568_1644426_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_013971277.1\|1644534_1645542_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_004375459.1\|1646158_1646482_-	ferredoxin family protein	NA	NA	NA	NA
WP_038408954.1\|1646622_1649196_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	7.6e-26	22.7
WP_013971279.1\|1649246_1650185_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VP19	Pseudomonas_phage	1.9e-123	69.9
WP_013971280.1\|1650236_1650431_-	DUF4224 domain-containing protein	A0A2H4JC20	uncultured_Caudovirales_phage	5.7e-19	67.7
WP_013971281.1\|1650469_1650829_-	hypothetical protein	NA	NA	NA	NA
WP_038408963.1\|1651005_1651194_-	hypothetical protein	NA	NA	NA	NA
WP_038408967.1\|1651190_1651586_-	DUF2591 family protein	A0A1B0VMD7	Pseudomonas_phage	1.1e-13	37.6
WP_038408969.1\|1652091_1652445_-	DUF4884 domain-containing protein	A0A2H4J399	uncultured_Caudovirales_phage	2.7e-11	45.3
WP_144241749.1\|1652441_1652792_-	hypothetical protein	A0A023NGB2	Nitrincola_phage	9.0e-23	50.0
WP_038408974.1\|1653301_1653526_-	hypothetical protein	NA	NA	NA	NA
WP_013971286.1\|1653522_1654185_-	hypothetical protein	NA	NA	NA	NA
WP_038408976.1\|1654247_1654910_+	hypothetical protein	NA	NA	NA	NA
WP_038408978.1\|1654931_1655807_-	hypothetical protein	A0A2H4J418	uncultured_Caudovirales_phage	1.2e-95	55.9
WP_038408980.1\|1655940_1656330_+	hypothetical protein	NA	NA	NA	NA
WP_013971288.1\|1656413_1657175_-	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	1.5e-123	85.8
WP_013971289.1\|1657287_1657668_+	hypothetical protein	NA	NA	NA	NA
WP_013971290.1\|1657738_1658197_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	3.1e-47	61.8
WP_038408982.1\|1658193_1658463_-	hypothetical protein	NA	NA	NA	NA
WP_013971292.1\|1658481_1658865_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	9.5e-26	59.8
WP_013971293.1\|1659256_1659697_-	tellurite resistance protein	A0A2H4P7E3	Pseudomonas_phage	1.8e-28	48.3
WP_049798432.1\|1660039_1660318_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_038410363.1\|1660433_1661090_-	LexA family transcriptional regulator	K7P850	Enterobacteria_phage	1.1e-48	49.5
WP_080563748.1\|1661195_1661426_+	helix-turn-helix domain-containing protein	W6MWX8	Pseudomonas_phage	7.7e-07	49.2
WP_080563749.1\|1661562_1662420_+	replication protein	B5WZX9	Pseudomonas_phage	5.4e-37	37.7
WP_038408984.1\|1662409_1663222_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	6.8e-98	67.5
WP_013971297.1\|1663224_1663521_+	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	2.6e-31	69.9
WP_013971298.1\|1663517_1663946_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	4.0e-49	75.7
WP_038408986.1\|1663942_1665241_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	9.8e-131	57.2
WP_144241750.1\|1665237_1665522_+	hypothetical protein	NA	NA	NA	NA
WP_038410364.1\|1665518_1665836_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.6e-29	59.0
WP_038408988.1\|1665848_1666520_+	hypothetical protein	J7HXH6	Pseudomonas_phage	1.5e-58	53.5
WP_013971302.1\|1666833_1667157_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.7e-28	63.2
WP_013971303.1\|1667160_1667481_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	1.7e-28	59.8
WP_038408990.1\|1667615_1668083_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.5e-44	59.7
WP_049798433.1\|1668042_1669851_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	9.5e-116	41.3
WP_010954706.1\|1669847_1670036_+	hypothetical protein	Q8W6U8	Burkholderia_virus	1.3e-07	63.5
WP_013971306.1\|1670038_1671310_+\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	1.1e-150	63.9
WP_013971307.1\|1671306_1672278_+	S49 family peptidase	A4JX00	Burkholderia_virus	1.5e-91	55.3
WP_144241806.1\|1672186_1673653_+\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	8.4e-147	61.2
WP_049798434.1\|1673627_1673954_+	hypothetical protein	NA	NA	NA	NA
WP_038408995.1\|1673956_1674508_+	hypothetical protein	NA	NA	NA	NA
WP_013971311.1\|1674510_1674885_+\|head,tail	head-tail adaptor protein	U5P0R0	Shigella_phage	6.7e-16	35.7
WP_038408997.1\|1674877_1675381_+	hypothetical protein	M1FPE2	Enterobacteria_phage	2.8e-09	32.2
WP_013971313.1\|1675411_1676005_+	hypothetical protein	B5TK65	Pseudomonas_phage	5.4e-52	51.5
WP_013971314.1\|1676010_1676214_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	2.2e-05	60.0
WP_013971315.1\|1676213_1677701_+\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	2.2e-163	59.3
WP_013971316.1\|1677754_1678102_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	2.8e-32	54.8
WP_013971317.1\|1678098_1678395_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	1.2e-28	71.0
WP_013971318.1\|1678524_1680480_+\|tail	phage tail tape measure protein	Q8W620	Enterobacteria_phage	1.3e-115	50.8
WP_013971319.1\|1680472_1681735_+	hypothetical protein	B5TK71	Pseudomonas_phage	4.5e-64	37.6
WP_013971320.1\|1681738_1682848_+	hypothetical protein	B5TK72	Pseudomonas_phage	3.3e-103	56.2
WP_013971321.1\|1682856_1683357_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	8.3e-54	67.3
WP_013971322.1\|1683353_1683740_+	hypothetical protein	B5TK74	Pseudomonas_phage	5.6e-26	51.6
WP_038409005.1\|1683729_1684773_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.7e-72	43.4
WP_013971324.1\|1684763_1685408_+	YmfQ family protein	NA	NA	NA	NA
WP_013971325.1\|1685410_1686178_+	hypothetical protein	A0A2H4J9C3	uncultured_Caudovirales_phage	2.6e-22	53.5
WP_038409008.1\|1686180_1686372_+	hypothetical protein	NA	NA	NA	NA
WP_013971327.1\|1688810_1689539_+	hypothetical protein	NA	NA	NA	NA
WP_013971328.1\|1689590_1690799_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_038409010.1\|1690926_1691466_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	7.6e-45	58.6
WP_013971330.1\|1691462_1691828_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	44.1
WP_144241808.1\|1691836_1692100_+	hypothetical protein	H2BDD7	Pseudomonas_virus	2.0e-19	60.0
WP_013971332.1\|1692199_1692646_+	hypothetical protein	NA	NA	NA	NA
WP_144241809.1\|1692742_1694881_-	calcium-binding protein	NA	NA	NA	NA
WP_038409012.1\|1695603_1697355_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	4.2e-20	24.1
WP_038410367.1\|1697551_1697776_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	7.7e-28	83.8
WP_038409014.1\|1697849_1698143_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	1.0e-35	72.2
WP_038409016.1\|1698139_1698433_+	hypothetical protein	NA	NA	NA	NA
WP_013971338.1\|1698875_1699358_+	CinA family protein	B5TK85	Pseudomonas_phage	2.8e-59	78.0
WP_013971339.1\|1699461_1700529_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.4e-112	62.0
WP_015269215.1\|1700550_1701021_+	recombination regulator RecX	NA	NA	NA	NA
WP_013971341.1\|1701070_1702189_-	LOG family protein	NA	NA	NA	NA
WP_013971342.1\|1702351_1702561_+	hypothetical protein	NA	NA	NA	NA
WP_013971343.1\|1702574_1702994_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_013971344.1\|1703215_1703926_+	DTW domain-containing protein	NA	NA	NA	NA
WP_013971345.1\|1704004_1704655_+	response regulator transcription factor	NA	NA	NA	NA
WP_004375479.1\|1704728_1705094_+	diacylglycerol kinase	NA	NA	NA	NA
WP_004375481.1\|1705090_1706017_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004375483.1\|1706138_1706918_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_013971347.1\|1708262_1708757_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
1706993:1707026	attR	NA	NA	NA	NA
WP_003252385.1\|1708889_1709489_-	YIP1 family protein	NA	NA	NA	NA
WP_012270926.1\|1709751_1710576_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.5e-105	71.6

DBSCAN-SWA_4

1851819 : 1862308

Acidithiobacillus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038408847.1\|1851819_1853334_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.2e-145	52.5
WP_038408850.1\|1853351_1854107_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	55.1
WP_038409057.1\|1854603_1855152_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.2e-51	57.1
WP_038409059.1\|1855151_1856033_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.3e-99	60.3
WP_038409061.1\|1856041_1856947_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.5e-24	35.8
WP_038409063.1\|1856943_1858014_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.0e-86	46.7
WP_038409065.1\|1858500_1858917_+	hypothetical protein	NA	NA	NA	NA
WP_080708137.1\|1859767_1860049_-	hypothetical protein	NA	NA	NA	NA
WP_024086152.1\|1860790_1862308_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.3e-85	36.4

DBSCAN-SWA_5

2955385 : 3024645

Pseudomonas_phage(41.51%)

integrase,capsid,holin,terminase,tail

attL 2954964:2954980|attR 3027800:3027816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2954964:2954980	attL	NA	NA	NA	NA
WP_038409473.1\|2955385_2956570_-	DUF3596 domain-containing protein	A0A1W6JTA0	Pseudomonas_phage	1.1e-125	59.9
WP_038409474.1\|2956954_2957269_-	hypothetical protein	NA	NA	NA	NA
WP_158491226.1\|2957332_2957506_-	hypothetical protein	A0A2H4J907	uncultured_Caudovirales_phage	1.4e-29	93.0
WP_038409475.1\|2957552_2957738_-	hypothetical protein	NA	NA	NA	NA
WP_038410416.1\|2957734_2958130_-	DUF2591 family protein	A0A125RNP6	Pseudomonas_phage	9.5e-13	38.5
WP_024086937.1\|2958135_2958417_-	hypothetical protein	NA	NA	NA	NA
WP_038409476.1\|2958413_2958677_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.3e-37	89.7
WP_038409477.1\|2958673_2959051_-	HNH endonuclease	Q3HQV7	Burkholderia_phage	2.6e-28	45.8
WP_038409478.1\|2959232_2959532_+	hypothetical protein	NA	NA	NA	NA
WP_049870811.1\|2959579_2960290_-	hypothetical protein	NA	NA	NA	NA
WP_038409479.1\|2960380_2961184_+	DUF3825 domain-containing protein	NA	NA	NA	NA
WP_038409480.1\|2961308_2961821_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	4.4e-10	57.1
WP_144241763.1\|2961929_2962619_+	hypothetical protein	NA	NA	NA	NA
WP_038409481.1\|2962644_2962839_-	hypothetical protein	NA	NA	NA	NA
WP_038409482.1\|2962842_2963355_-	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	5.9e-07	30.9
WP_038409483.1\|2963362_2963926_-	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	1.0e-92	95.2
WP_038409484.1\|2963922_2964654_-	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	3.9e-129	97.5
WP_038409485.1\|2964840_2965146_-	hypothetical protein	NA	NA	NA	NA
WP_038409486.1\|2965447_2965663_-	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	4.0e-13	54.8
WP_038409487.1\|2965659_2966235_-	hypothetical protein	A0A291I9C8	Pseudomonas_phage	5.6e-14	29.8
WP_038409488.1\|2966231_2966435_-	hypothetical protein	NA	NA	NA	NA
WP_038409489.1\|2966431_2966848_-	hypothetical protein	NA	NA	NA	NA
WP_038409490.1\|2966860_2967109_-	hypothetical protein	NA	NA	NA	NA
WP_038409491.1\|2967129_2967363_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_049870812.1\|2967359_2967710_-	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	1.5e-54	88.7
WP_049870813.1\|2967758_2968370_-	hypothetical protein	A0A2H4YH09	Raoultella_phage	3.7e-32	41.6
WP_038409492.1\|2968783_2969149_-	hypothetical protein	A0A088C427	Shewanella_sp._phage	3.3e-52	74.6
WP_049870814.1\|2969175_2969742_-	hypothetical protein	J7I0S5	Pseudomonas_phage	5.1e-52	52.7
WP_038409493.1\|2969827_2970013_-	hypothetical protein	NA	NA	NA	NA
WP_038409494.1\|2970442_2970769_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	7.8e-29	66.7
WP_038409495.1\|2970986_2971925_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.6e-08	33.6
WP_038409496.1\|2971954_2972323_-	hypothetical protein	NA	NA	NA	NA
WP_038409497.1\|2972322_2973441_-	hypothetical protein	NA	NA	NA	NA
WP_038409499.1\|2973887_2974730_-	S24 family peptidase	A0A2D1GNH0	Pseudomonas_phage	5.6e-111	68.2
WP_016486618.1\|2974826_2975075_+	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	7.3e-27	81.3
WP_012053015.1\|2975102_2975294_+	hypothetical protein	B5WZX7	Pseudomonas_phage	5.4e-06	41.0
WP_038409500.1\|2975312_2975501_+	hypothetical protein	NA	NA	NA	NA
WP_158491227.1\|2975622_2975805_-	hypothetical protein	NA	NA	NA	NA
WP_049870815.1\|2975834_2976425_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_049870816.1\|2976421_2977432_+	hypothetical protein	A0A067ZIA1	Vibrio_phage	1.1e-36	42.0
WP_038409501.1\|2977424_2978801_+	replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	2.6e-126	53.2
WP_049870817.1\|2978856_2979207_+	hypothetical protein	J7HXK7	Pseudomonas_phage	2.5e-09	39.5
WP_038409503.1\|2979206_2979494_+	hypothetical protein	NA	NA	NA	NA
WP_158491228.1\|2979490_2979664_+	hypothetical protein	NA	NA	NA	NA
WP_153811171.1\|2979660_2979837_+	hypothetical protein	NA	NA	NA	NA
WP_038409507.1\|2979829_2980300_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	5.6e-60	67.3
WP_038409508.1\|2980296_2980902_+	ninG protein	L7TH85	Pseudomonas_virus	2.7e-51	52.4
WP_038409510.1\|2981041_2981587_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	5.6e-56	63.1
WP_038409511.1\|2981679_2982213_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_038409512.1\|2982377_2982887_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.2e-87	99.4
WP_038409514.1\|2983130_2983784_+	hypothetical protein	NA	NA	NA	NA
WP_038409515.1\|2983825_2984206_+	hypothetical protein	NA	NA	NA	NA
WP_038409517.1\|2984207_2984426_-	hypothetical protein	NA	NA	NA	NA
WP_038409518.1\|2984614_2984989_+	membrane protein	A0A2H4J7X6	uncultured_Caudovirales_phage	3.9e-64	98.4
WP_029886756.1\|2984989_2985271_+\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	1.8e-45	100.0
WP_038409520.1\|2985357_2985903_+\|terminase	terminase small subunit	A0A088C409	Shewanella_sp._phage	3.9e-25	47.3
WP_038409522.1\|2985889_2987191_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.4e-148	59.0
WP_038409524.1\|2987199_2988624_+	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	1.2e-68	35.9
WP_038409525.1\|2988613_2989660_+\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	1.9e-47	35.0
WP_038409527.1\|2989777_2990497_+	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	4.0e-41	63.2
WP_038409528.1\|2990507_2991455_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.9e-128	70.9
WP_038409530.1\|2991504_2992110_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	2.3e-26	42.8
WP_038409532.1\|2992149_2992542_+	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	5.6e-05	32.3
WP_038409534.1\|2992544_2992925_+	hypothetical protein	A0A059VA70	Pseudomonas_phage	8.2e-30	51.2
WP_038409537.1\|2992927_2993317_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	2.1e-33	53.7
WP_038409540.1\|2993313_2993736_+	hypothetical protein	A0A059VK45	Pseudomonas_phage	1.8e-54	75.0
WP_038409542.1\|2993803_2994967_+	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	1.6e-124	72.7
WP_038409545.1\|2995046_2995535_+	hypothetical protein	A0A059VF34	Pseudomonas_phage	1.5e-39	52.6
WP_038409547.1\|2995776_2996385_-	hypothetical protein	A0A2H4J8E2	uncultured_Caudovirales_phage	1.7e-16	33.5
WP_038410427.1\|2996600_2996963_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_038409549.1\|2997052_2997856_+	hypothetical protein	NA	NA	NA	NA
WP_038409554.1\|2997839_2998229_+	hypothetical protein	NA	NA	NA	NA
WP_038409556.1\|2998290_2998587_+	hypothetical protein	S4TR42	Salmonella_phage	9.6e-10	37.2
WP_049870819.1\|2998645_3003436_+\|tail	phage tail tape measure protein	A0A059VJZ1	Pseudomonas_phage	5.5e-78	27.2
WP_038409558.1\|3003432_3004398_+	hypothetical protein	R9TJ58	Synechococcus_phage	1.8e-49	37.8
WP_049870820.1\|3004397_3005126_+	hypothetical protein	M1F173	Cronobacter_phage	6.9e-09	39.1
WP_038409560.1\|3005122_3005743_+	hypothetical protein	NA	NA	NA	NA
WP_038409561.1\|3005802_3008406_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_038409563.1\|3008580_3009414_+	hypothetical protein	NA	NA	NA	NA
WP_038409564.1\|3009464_3009911_+	structural protein P5	A0A2R3UAM8	Myoviridae_environmental_samples	1.4e-36	55.5
WP_038409566.1\|3009907_3010270_+	hypothetical protein	J7HXL1	Pseudomonas_phage	1.2e-17	50.0
WP_038409568.1\|3010746_3010971_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	3.6e-25	78.4
WP_038409570.1\|3011046_3011355_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	2.9e-33	69.5
WP_038409571.1\|3011344_3011551_+	hypothetical protein	A0A2H4J7A7	uncultured_Caudovirales_phage	2.9e-05	41.3
WP_013972439.1\|3012954_3014496_+	altronate dehydratase	NA	NA	NA	NA
WP_013972440.1\|3014530_3015589_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_038409573.1\|3015609_3016827_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_023663253.1\|3016916_3018233_+	MFS transporter	NA	NA	NA	NA
WP_038409575.1\|3018378_3020028_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_038409577.1\|3020024_3022286_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_038409578.1\|3022335_3023517_-	NnrS family protein	NA	NA	NA	NA
WP_038409584.1\|3023730_3024645_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	2.5e-32	32.6
3027800:3027816	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3365585 : 3416904

Agrobacterium_phage(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013972749.1\|3365585_3366068_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038409687.1\|3366067_3367888_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_015270493.1\|3367851_3368922_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038409688.1\|3368918_3371516_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.4e-88	30.2
WP_013972753.1\|3371540_3372263_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_013972754.1\|3372259_3373603_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_023661181.1\|3373599_3374316_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_038409689.1\|3374346_3378150_+	ImcF-like family protein	NA	NA	NA	NA
WP_013972757.1\|3378146_3379055_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_038409690.1\|3379051_3381547_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_013972759.1\|3381690_3382209_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_013972760.1\|3382304_3383402_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_038409691.1\|3383556_3386073_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	7.4e-159	35.6
WP_038409692.1\|3386240_3386834_+	hypothetical protein	NA	NA	NA	NA
WP_013972763.1\|3386951_3387827_-	AEC family transporter	NA	NA	NA	NA
WP_023663517.1\|3388151_3389456_+	MFS transporter	NA	NA	NA	NA
WP_013972765.1\|3389563_3390526_-	D-glycerate dehydrogenase	M1NSB9	Streptococcus_phage	4.2e-22	30.0
WP_023663526.1\|3390537_3391830_-	MFS transporter	NA	NA	NA	NA
WP_015270507.1\|3391887_3392838_-	sugar kinase	NA	NA	NA	NA
WP_013972768.1\|3392830_3393619_-	TIM barrel protein	NA	NA	NA	NA
WP_013972769.1\|3393687_3394707_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_024087188.1\|3394979_3396224_-	cytochrome c	NA	NA	NA	NA
WP_038409693.1\|3396236_3398021_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_024087189.1\|3398024_3398765_-	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_038409694.1\|3399163_3400012_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_038409696.1\|3400026_3402291_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.6e-19	23.7
WP_023662458.1\|3405652_3406981_+	hypothetical protein	NA	NA	NA	NA
WP_013972776.1\|3407013_3409245_+	hypothetical protein	NA	NA	NA	NA
WP_013972777.1\|3409260_3409734_+	curlin	NA	NA	NA	NA
WP_013972778.1\|3409750_3411196_+	curlin	NA	NA	NA	NA
WP_013972779.1\|3411421_3412069_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_013972780.1\|3412236_3412524_+	hypothetical protein	NA	NA	NA	NA
WP_013972781.1\|3412620_3413235_+	DUF1282 family protein	NA	NA	NA	NA
WP_024087193.1\|3413254_3413515_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_013972783.1\|3413699_3414629_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_013970357.1\|3414879_3415830_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038408539.1\|3415956_3416904_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

3929357 : 3976331

uncultured_Caudovirales_phage(20.0%)

transposase,holin,integrase

attL 3949267:3949283|attR 3979256:3979272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038409882.1\|3929357_3930662_-\|transposase	IS1380-like element ISPa33 family transposase	A0A1X9I6F6	Streptococcus_phage	6.5e-34	28.0
WP_014819627.1\|3931200_3931821_+	LysE family translocator	NA	NA	NA	NA
WP_033939138.1\|3931871_3933161_+\|transposase	ISL3-like element ISPst9 family transposase	A0A2D1GQC1	Lysinibacillus_phage	8.0e-85	39.8
WP_049870825.1\|3934279_3935227_+	phenol degradation protein meta	NA	NA	NA	NA
WP_038409883.1\|3935401_3935761_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_038409884.1\|3937256_3937697_-	CBS domain-containing protein	NA	NA	NA	NA
WP_038409885.1\|3937840_3938182_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_038409886.1\|3938178_3938496_-	YciI family protein	NA	NA	NA	NA
WP_038409888.1\|3938499_3939372_-	6-chlorohydroxyquinol-1,2-dioxygenase	NA	NA	NA	NA
WP_038409889.1\|3939440_3940508_-	maleylacetate reductase	NA	NA	NA	NA
WP_038409891.1\|3940516_3941980_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_038409892.1\|3942073_3943093_-	hydroxyquinol 1,2-dioxygenase	NA	NA	NA	NA
WP_038409893.1\|3943144_3943639_-	hypothetical protein	NA	NA	NA	NA
WP_049870826.1\|3943805_3944066_-	hypothetical protein	NA	NA	NA	NA
WP_049870827.1\|3944596_3945118_+	cupin domain-containing protein	NA	NA	NA	NA
WP_038409896.1\|3945197_3945443_+	hypothetical protein	NA	NA	NA	NA
WP_010465829.1\|3948743_3949346_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.6e-40	50.3
3949267:3949283	attL	NA	NA	NA	NA
WP_003151133.1\|3949537_3949915_+	hypothetical protein	NA	NA	NA	NA
WP_001172026.1\|3949895_3950231_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_000741275.1\|3950245_3950581_+	hypothetical protein	NA	NA	NA	NA
WP_000091614.1\|3950604_3950931_+	hypothetical protein	NA	NA	NA	NA
WP_023294894.1\|3950927_3951299_+	hypothetical protein	NA	NA	NA	NA
WP_038409898.1\|3952187_3953264_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.0e-104	66.5
WP_038409899.1\|3953346_3953736_-	hypothetical protein	NA	NA	NA	NA
WP_038409900.1\|3953732_3956750_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.2e-75	25.6
WP_038409901.1\|3957363_3958668_+	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-14	43.9
WP_038409903.1\|3959026_3960040_+	DUF4113 domain-containing protein	I6RSM4	Salmonella_phage	1.4e-79	47.0
WP_086005488.1\|3960043_3960897_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.2e-20	41.7
WP_080708175.1\|3960915_3961182_+	transcriptional regulator	NA	NA	NA	NA
WP_038409905.1\|3961165_3961978_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_038409906.1\|3962084_3963158_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_038409908.1\|3963154_3964234_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_038409909.1\|3964250_3965219_+	acylglycerol kinase family protein	NA	NA	NA	NA
WP_038409910.1\|3965233_3966187_+	hypothetical protein	NA	NA	NA	NA
WP_038410461.1\|3966250_3966784_-	hypothetical protein	NA	NA	NA	NA
WP_038409911.1\|3966846_3967692_-	DNA repair exonuclease	NA	NA	NA	NA
WP_080708176.1\|3967837_3970180_+	hypothetical protein	NA	NA	NA	NA
WP_038409912.1\|3970205_3970973_-	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	A0A167R0X0	Powai_lake_megavirus	3.3e-25	38.2
WP_038409913.1\|3971094_3972282_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_038410463.1\|3972470_3973226_+\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_016851620.1\|3973913_3974378_+	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|3975317_3976331_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
3979256:3979272	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4093692 : 4189647

uncultured_Caudovirales_phage(26.67%)

protease,integrase,holin,transposase,tRNA

attL 4116153:4116167|attR 4194863:4194892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013971142.1\|4093692_4095225_+\|transposase	IS66-like element ISPpu15 family transposase	S5VTD3	Leptospira_phage	9.9e-82	34.9
WP_004575502.1\|4096815_4097229_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_080708182.1\|4097259_4097460_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_080708183.1\|4097571_4099929_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.5e-73	34.1
WP_004575499.1\|4099931_4100177_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004575498.1\|4100270_4100807_-	blue (type 1) copper domain-containing protein	NA	NA	NA	NA
WP_004575497.1\|4100973_4101327_-	hypothetical protein	NA	NA	NA	NA
WP_038409942.1\|4101367_4102045_-\|transposase	IS5/IS1182 family transposase	Q38213	Escherichia_phage	8.0e-52	38.6
WP_085983057.1\|4102307_4103160_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.8e-24	46.7
WP_038409943.1\|4103170_4103758_+	hypothetical protein	NA	NA	NA	NA
WP_038409944.1\|4103816_4105235_-	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_038410470.1\|4107307_4108873_+	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.4e-43	57.0
WP_144241780.1\|4110434_4111336_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-20	41.7
WP_080708175.1\|4111354_4111621_+	transcriptional regulator	NA	NA	NA	NA
WP_038409905.1\|4111604_4112417_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_038409906.1\|4112523_4113597_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_038409908.1\|4113593_4114673_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_038409909.1\|4114689_4115658_+	acylglycerol kinase family protein	NA	NA	NA	NA
WP_038409910.1\|4115672_4116626_+	hypothetical protein	NA	NA	NA	NA
4116153:4116167	attL	NA	NA	NA	NA
WP_038410461.1\|4116689_4117223_-	hypothetical protein	NA	NA	NA	NA
4116153:4116167	attL	NA	NA	NA	NA
WP_038409911.1\|4117285_4118131_-	DNA repair exonuclease	NA	NA	NA	NA
WP_080708176.1\|4118276_4120619_+	hypothetical protein	NA	NA	NA	NA
WP_038409912.1\|4120644_4121412_-	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	A0A167R0X0	Powai_lake_megavirus	3.3e-25	38.2
WP_038409913.1\|4121533_4122721_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_038410463.1\|4122909_4123665_+\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_016851620.1\|4124352_4124817_+	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|4125756_4126770_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000946487.1\|4126871_4127723_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
4127661:4127675	attR	NA	NA	NA	NA
WP_000376623.1\|4127850_4128351_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
4127661:4127675	attR	NA	NA	NA	NA
WP_001389365.1\|4128738_4129503_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_032491441.1\|4129574_4130849_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_080708177.1\|4130877_4131903_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_080708178.1\|4132030_4132231_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|4132196_4132961_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_087535084.1\|4135075_4136226_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.2e-100	65.9
WP_080708190.1\|4136274_4138314_+	hypothetical protein	NA	NA	NA	NA
WP_158491232.1\|4139007_4139631_-	hypothetical protein	NA	NA	NA	NA
WP_038409919.1\|4140300_4140837_+	Bro-N domain-containing protein	NA	NA	NA	NA
WP_128637120.1\|4141179_4141626_-	hypothetical protein	NA	NA	NA	NA
WP_013973889.1\|4141672_4142128_-	hypothetical protein	NA	NA	NA	NA
WP_013973890.1\|4142633_4142834_+	hypothetical protein	NA	NA	NA	NA
WP_023661524.1\|4142898_4143561_+	hypothetical protein	NA	NA	NA	NA
WP_013973892.1\|4143702_4144224_+	hypothetical protein	NA	NA	NA	NA
WP_013973893.1\|4144225_4145122_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038409920.1\|4145234_4147271_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_038408850.1\|4147645_4148401_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	55.1
WP_038408847.1\|4148418_4149933_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.2e-145	52.5
WP_034000036.1\|4150580_4151552_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_001138064.1\|4152717_4155684_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|4155686_4156247_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_003460108.1\|4156836_4157268_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	1.0e-20	36.6
WP_158491233.1\|4159550_4159703_-	hypothetical protein	NA	NA	NA	NA
WP_038409946.1\|4159947_4160160_-	hypothetical protein	NA	NA	NA	NA
WP_038409947.1\|4160238_4160535_-	hypothetical protein	NA	NA	NA	NA
WP_038409948.1\|4160696_4160936_-	hypothetical protein	NA	NA	NA	NA
WP_038409949.1\|4161045_4161840_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	3.8e-101	65.8
WP_080708186.1\|4161991_4162354_-	hypothetical protein	A0A2H4JBH9	uncultured_Caudovirales_phage	8.4e-24	56.0
WP_049870829.1\|4163474_4164497_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.8e-109	58.9
WP_013973207.1\|4164827_4165847_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	3.4e-22	26.1
WP_013973208.1\|4166044_4166755_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003257405.1\|4166811_4167129_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_023662816.1\|4167333_4168401_+	phosphotransferase family protein	NA	NA	NA	NA
WP_015270905.1\|4168437_4169205_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-18	31.7
WP_013973212.1\|4169205_4170027_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_016498900.1\|4170259_4170610_-	hypothetical protein	NA	NA	NA	NA
WP_038409951.1\|4170724_4171015_+	RcnB family protein	NA	NA	NA	NA
WP_003257401.1\|4171144_4171336_+	hypothetical protein	NA	NA	NA	NA
WP_013973215.1\|4171410_4171794_+	hypothetical protein	NA	NA	NA	NA
WP_024087381.1\|4171932_4173762_+	SLC13 family permease	NA	NA	NA	NA
WP_038409953.1\|4173899_4175324_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.6e-17	32.2
WP_023662099.1\|4175325_4176087_-	TSUP family transporter	NA	NA	NA	NA
WP_024087383.1\|4176185_4177091_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038409954.1\|4177929_4178508_+	cysteine hydrolase	NA	NA	NA	NA
WP_013973221.1\|4178628_4178829_+	hypothetical protein	NA	NA	NA	NA
WP_013973222.1\|4179149_4179335_+	hypothetical protein	NA	NA	NA	NA
WP_003251184.1\|4180953_4181625_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_013973275.1\|4181859_4183239_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_013973276.1\|4183423_4183816_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.3e-53	79.1
WP_024087386.1\|4183817_4184177_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-35	63.3
WP_038409955.1\|4184176_4184473_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	7.1e-29	64.6
WP_013973279.1\|4184469_4184805_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.7e-43	76.6
WP_023661640.1\|4184801_4185806_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.7e-154	80.1
WP_013973281.1\|4185898_4186858_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_013973282.1\|4186974_4188366_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003258877.1\|4188366_4189647_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-96	54.4
4194863:4194892	attR	NA	NA	NA	NA

DBSCAN-SWA_9

6048294 : 6105751

Pseudomonas_phage(30.77%)

integrase,capsid,plate,transposase,tail

attL 6039769:6039807|attR 6106270:6106308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6039769:6039807	attL	NA	NA	NA	NA
WP_013971142.1\|6048294_6049827_-\|transposase	IS66-like element ISPpu15 family transposase	S5VTD3	Leptospira_phage	9.9e-82	34.9
WP_010951896.1\|6049845_6050202_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	9.8e-17	41.2
WP_038410242.1\|6050286_6051063_-	hypothetical protein	NA	NA	NA	NA
WP_144241793.1\|6051028_6051208_-	hypothetical protein	NA	NA	NA	NA
WP_144241794.1\|6051551_6052259_-	hypothetical protein	NA	NA	NA	NA
WP_144241795.1\|6052255_6053158_-	hypothetical protein	NA	NA	NA	NA
WP_038410244.1\|6054115_6054481_-	hypothetical protein	Q6QIE8	Burkholderia_phage	3.6e-22	44.4
WP_080708196.1\|6054477_6055047_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	5.9e-24	50.4
WP_038410246.1\|6054923_6055145_-	hypothetical protein	J9RW45	Pseudomonas_phage	5.7e-15	68.3
WP_038410247.1\|6055146_6055836_-	DUF2786 domain-containing protein	A0A0S4L2R2	Pseudomonas_phage	2.3e-99	78.6
WP_079990868.1\|6055837_6056422_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	5.9e-43	45.1
WP_038410249.1\|6056626_6056899_-	hypothetical protein	Q5ZR07	Pseudomonas_phage	3.5e-06	35.3
WP_038410250.1\|6056895_6057162_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	2.1e-32	81.8
WP_038410251.1\|6057158_6057473_-	hypothetical protein	NA	NA	NA	NA
WP_038410252.1\|6057474_6058656_-	AAA family ATPase	Q5ZR05	Pseudomonas_phage	4.5e-151	73.3
WP_038410253.1\|6058655_6060413_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	2.5e-214	64.2
WP_049870857.1\|6060416_6061289_-	hypothetical protein	J9RW58	Pseudomonas_phage	1.8e-51	45.6
WP_038410255.1\|6061416_6061734_-	hypothetical protein	J9SUN0	Pseudomonas_phage	2.0e-37	79.2
WP_038410256.1\|6061730_6062210_-	hypothetical protein	A4JWN5	Burkholderia_virus	3.8e-48	57.1
WP_038410257.1\|6062547_6062772_-	DNA-binding protein	Q6QID3	Burkholderia_phage	4.1e-29	87.3
WP_144241813.1\|6062892_6063303_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038410258.1\|6063305_6063896_+	hypothetical protein	NA	NA	NA	NA
WP_038410259.1\|6063929_6064538_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_038410260.1\|6064654_6065155_+	structural protein	J9Q7Y7	Salmonella_phage	1.5e-39	53.4
WP_038410261.1\|6065151_6065370_+	hypothetical protein	NA	NA	NA	NA
WP_049870835.1\|6065547_6066156_+	hypothetical protein	Q5ZQY9	Pseudomonas_phage	5.2e-34	48.1
WP_038410263.1\|6066162_6066381_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_038410264.1\|6066377_6066671_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	3.5e-12	41.7
WP_038410265.1\|6066667_6066961_+	hypothetical protein	J9SNG3	Pseudomonas_phage	2.3e-27	65.3
WP_038410266.1\|6066963_6067515_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	7.8e-29	48.2
WP_038410267.1\|6067511_6069131_+	phage protein	A0A219VH72	Ochrobactrum_phage	5.1e-113	44.9
WP_038410268.1\|6069127_6070630_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.3e-163	59.5
WP_038410269.1\|6070632_6071457_+\|capsid	minor capsid protein	A0A0A1IX74	Pseudomonas_phage	3.1e-82	59.8
WP_038410270.1\|6071453_6071936_+	phage virion morphogenesis protein	A4JWJ7	Burkholderia_virus	6.6e-16	35.6
WP_038410271.1\|6072168_6073269_+	peptidase	A4JWJ9	Burkholderia_virus	1.2e-102	52.2
WP_038410272.1\|6073284_6074208_+	hypothetical protein	A4JWK0	Burkholderia_virus	2.1e-79	49.2
WP_038410273.1\|6074216_6074564_+	hypothetical protein	NA	NA	NA	NA
WP_038410274.1\|6074563_6074896_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	6.3e-26	60.0
WP_038410275.1\|6074898_6075333_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	4.2e-38	55.2
WP_038410276.1\|6075329_6075761_+	hypothetical protein	NA	NA	NA	NA
WP_038410277.1\|6075788_6075995_+	hypothetical protein	NA	NA	NA	NA
WP_038410278.1\|6075994_6077431_+\|tail	tail protein	A4JWK5	Burkholderia_virus	8.2e-179	66.0
WP_038410279.1\|6077430_6077955_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	6.0e-47	50.0
WP_038410280.1\|6078020_6078215_-	hypothetical protein	NA	NA	NA	NA
WP_038410281.1\|6078316_6078631_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	9.9e-13	46.7
WP_038410282.1\|6078690_6078948_-	hypothetical protein	NA	NA	NA	NA
WP_038410283.1\|6078971_6081590_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.0e-139	36.5
WP_038410284.1\|6081589_6082468_+\|tail	phage tail protein	A0A067ZI88	Vibrio_phage	1.5e-10	32.5
WP_038410285.1\|6082467_6082674_+	membrane protein	Q6QIA3	Burkholderia_phage	5.1e-18	62.3
WP_038410286.1\|6082661_6083777_+	late control protein D	Q6QIA2	Burkholderia_phage	1.1e-66	40.2
WP_038410287.1\|6083786_6084338_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_080708197.1\|6084394_6084772_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.6e-33	61.9
WP_038410289.1\|6084755_6085880_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.6e-84	45.4
WP_049870837.1\|6085872_6087003_+	hypothetical protein	A4JWL7	Burkholderia_virus	2.4e-24	36.9
WP_038410290.1\|6086999_6087365_+	hypothetical protein	NA	NA	NA	NA
WP_144241796.1\|6087376_6089941_+	hypothetical protein	NA	NA	NA	NA
WP_049870838.1\|6090017_6090587_+	hypothetical protein	NA	NA	NA	NA
WP_038410292.1\|6090580_6090889_+	hypothetical protein	K4I403	Acidithiobacillus_phage	5.1e-22	59.4
WP_038410505.1\|6091360_6091717_-	response regulator	NA	NA	NA	NA
WP_013974754.1\|6091725_6092718_-	response regulator	NA	NA	NA	NA
WP_024087898.1\|6092956_6098005_+	AAA family ATPase	NA	NA	NA	NA
WP_004375560.1\|6098122_6098749_-	hydrolase	NA	NA	NA	NA
WP_013974756.1\|6098822_6099185_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024087899.1\|6099365_6100340_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_024087900.1\|6100583_6102371_+	potassium transporter	NA	NA	NA	NA
WP_015272306.1\|6102786_6103080_+	hypothetical protein	NA	NA	NA	NA
WP_013974760.1\|6103257_6103887_-	hydrolase	NA	NA	NA	NA
WP_038408539.1\|6104803_6105751_-\|transposase	IS110 family transposase	NA	NA	NA	NA
6106270:6106308	attR	NA	NA	NA	NA

DBSCAN-SWA_10

6166911 : 6224368

Pseudomonas_phage(30.77%)

integrase,capsid,plate,transposase,tail

attL 6158386:6158424|attR 6224887:6224925

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6158386:6158424	attL	NA	NA	NA	NA
WP_013971142.1\|6166911_6168444_-\|transposase	IS66-like element ISPpu15 family transposase	S5VTD3	Leptospira_phage	9.9e-82	34.9
WP_010951896.1\|6168462_6168819_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	9.8e-17	41.2
WP_038410242.1\|6168903_6169680_-	hypothetical protein	NA	NA	NA	NA
WP_144241793.1\|6169645_6169825_-	hypothetical protein	NA	NA	NA	NA
WP_144241794.1\|6170168_6170876_-	hypothetical protein	NA	NA	NA	NA
WP_144241795.1\|6170872_6171775_-	hypothetical protein	NA	NA	NA	NA
WP_038410244.1\|6172732_6173098_-	hypothetical protein	Q6QIE8	Burkholderia_phage	3.6e-22	44.4
WP_080708196.1\|6173094_6173664_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	5.9e-24	50.4
WP_038410246.1\|6173540_6173762_-	hypothetical protein	J9RW45	Pseudomonas_phage	5.7e-15	68.3
WP_038410247.1\|6173763_6174453_-	DUF2786 domain-containing protein	A0A0S4L2R2	Pseudomonas_phage	2.3e-99	78.6
WP_079990868.1\|6174454_6175039_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	5.9e-43	45.1
WP_038410249.1\|6175243_6175516_-	hypothetical protein	Q5ZR07	Pseudomonas_phage	3.5e-06	35.3
WP_038410250.1\|6175512_6175779_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	2.1e-32	81.8
WP_038410251.1\|6175775_6176090_-	hypothetical protein	NA	NA	NA	NA
WP_038410252.1\|6176091_6177273_-	AAA family ATPase	Q5ZR05	Pseudomonas_phage	4.5e-151	73.3
WP_038410253.1\|6177272_6179030_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	2.5e-214	64.2
WP_049870857.1\|6179033_6179906_-	hypothetical protein	J9RW58	Pseudomonas_phage	1.8e-51	45.6
WP_038410255.1\|6180033_6180351_-	hypothetical protein	J9SUN0	Pseudomonas_phage	2.0e-37	79.2
WP_038410256.1\|6180347_6180827_-	hypothetical protein	A4JWN5	Burkholderia_virus	3.8e-48	57.1
WP_038410257.1\|6181164_6181389_-	DNA-binding protein	Q6QID3	Burkholderia_phage	4.1e-29	87.3
WP_144241813.1\|6181509_6181920_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038410258.1\|6181922_6182513_+	hypothetical protein	NA	NA	NA	NA
WP_038410259.1\|6182546_6183155_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_038410260.1\|6183271_6183772_+	structural protein	J9Q7Y7	Salmonella_phage	1.5e-39	53.4
WP_038410261.1\|6183768_6183987_+	hypothetical protein	NA	NA	NA	NA
WP_049870835.1\|6184164_6184773_+	hypothetical protein	Q5ZQY9	Pseudomonas_phage	5.2e-34	48.1
WP_038410263.1\|6184779_6184998_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_038410264.1\|6184994_6185288_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	3.5e-12	41.7
WP_038410265.1\|6185284_6185578_+	hypothetical protein	J9SNG3	Pseudomonas_phage	2.3e-27	65.3
WP_038410266.1\|6185580_6186132_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	7.8e-29	48.2
WP_038410267.1\|6186128_6187748_+	phage protein	A0A219VH72	Ochrobactrum_phage	5.1e-113	44.9
WP_038410268.1\|6187744_6189247_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.3e-163	59.5
WP_038410269.1\|6189249_6190074_+\|capsid	minor capsid protein	A0A0A1IX74	Pseudomonas_phage	3.1e-82	59.8
WP_038410270.1\|6190070_6190553_+	phage virion morphogenesis protein	A4JWJ7	Burkholderia_virus	6.6e-16	35.6
WP_038410271.1\|6190785_6191886_+	peptidase	A4JWJ9	Burkholderia_virus	1.2e-102	52.2
WP_038410272.1\|6191901_6192825_+	hypothetical protein	A4JWK0	Burkholderia_virus	2.1e-79	49.2
WP_038410273.1\|6192833_6193181_+	hypothetical protein	NA	NA	NA	NA
WP_038410274.1\|6193180_6193513_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	6.3e-26	60.0
WP_038410275.1\|6193515_6193950_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	4.2e-38	55.2
WP_038410276.1\|6193946_6194378_+	hypothetical protein	NA	NA	NA	NA
WP_038410277.1\|6194405_6194612_+	hypothetical protein	NA	NA	NA	NA
WP_038410278.1\|6194611_6196048_+\|tail	tail protein	A4JWK5	Burkholderia_virus	8.2e-179	66.0
WP_038410279.1\|6196047_6196572_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	6.0e-47	50.0
WP_038410280.1\|6196637_6196832_-	hypothetical protein	NA	NA	NA	NA
WP_038410281.1\|6196933_6197248_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	9.9e-13	46.7
WP_038410282.1\|6197307_6197565_-	hypothetical protein	NA	NA	NA	NA
WP_038410283.1\|6197588_6200207_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.0e-139	36.5
WP_038410284.1\|6200206_6201085_+\|tail	phage tail protein	A0A067ZI88	Vibrio_phage	1.5e-10	32.5
WP_038410285.1\|6201084_6201291_+	membrane protein	Q6QIA3	Burkholderia_phage	5.1e-18	62.3
WP_038410286.1\|6201278_6202394_+	late control protein D	Q6QIA2	Burkholderia_phage	1.1e-66	40.2
WP_038410287.1\|6202403_6202955_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_080708197.1\|6203011_6203389_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.6e-33	61.9
WP_038410289.1\|6203372_6204497_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.6e-84	45.4
WP_049870837.1\|6204489_6205620_+	hypothetical protein	A4JWL7	Burkholderia_virus	2.4e-24	36.9
WP_038410290.1\|6205616_6205982_+	hypothetical protein	NA	NA	NA	NA
WP_144241796.1\|6205993_6208558_+	hypothetical protein	NA	NA	NA	NA
WP_049870838.1\|6208634_6209204_+	hypothetical protein	NA	NA	NA	NA
WP_038410292.1\|6209197_6209506_+	hypothetical protein	K4I403	Acidithiobacillus_phage	5.1e-22	59.4
WP_038410505.1\|6209977_6210334_-	response regulator	NA	NA	NA	NA
WP_013974754.1\|6210342_6211335_-	response regulator	NA	NA	NA	NA
WP_024087898.1\|6211573_6216622_+	AAA family ATPase	NA	NA	NA	NA
WP_004375560.1\|6216739_6217366_-	hydrolase	NA	NA	NA	NA
WP_013974756.1\|6217439_6217802_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024087899.1\|6217982_6218957_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_024087900.1\|6219200_6220988_+	potassium transporter	NA	NA	NA	NA
WP_015272306.1\|6221403_6221697_+	hypothetical protein	NA	NA	NA	NA
WP_013974760.1\|6221874_6222504_-	hydrolase	NA	NA	NA	NA
WP_038408539.1\|6223420_6224368_-\|transposase	IS110 family transposase	NA	NA	NA	NA
6224887:6224925	attR	NA	NA	NA	NA

DBSCAN-SWA_11

6373635 : 6408335

Shigella_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144084463.1\|6373635_6374763_-\|transposase	transposase	NA	NA	NA	NA
WP_085982912.1\|6374787_6375937_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.5e-100	65.2
WP_010951445.1\|6377366_6378350_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	2.4e-49	38.3
WP_010951446.1\|6378315_6378735_-	GtrA family protein	NA	NA	NA	NA
WP_011953108.1\|6378992_6379961_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009395904.1\|6380171_6381479_+	porin	NA	NA	NA	NA
WP_011953109.1\|6381777_6382803_+	hypothetical protein	NA	NA	NA	NA
WP_010951451.1\|6382930_6383155_+	hypothetical protein	NA	NA	NA	NA
WP_010951452.1\|6383247_6385245_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-117	40.7
WP_003253432.1\|6385447_6385771_-	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_010951454.1\|6385933_6389095_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_010951455.1\|6389119_6390370_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010951456.1\|6390438_6391710_-	TolC family protein	NA	NA	NA	NA
WP_013973047.1\|6393332_6394316_+\|transposase	IS5-like element IS2000 family transposase	A0A077SK28	Escherichia_phage	4.7e-101	58.2
WP_003253420.1\|6395135_6395810_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-27	34.7
WP_010951457.1\|6395927_6396251_+	hypothetical protein	NA	NA	NA	NA
WP_049870859.1\|6396352_6396826_-	hypothetical protein	NA	NA	NA	NA
WP_024086516.1\|6396932_6397913_+\|transposase	IS5-like element ISPa26 family transposase	A0A077K814	Ralstonia_phage	3.2e-94	56.7
WP_080676077.1\|6398209_6398548_+	hypothetical protein	NA	NA	NA	NA
WP_038408850.1\|6399206_6399962_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	55.1
WP_038408847.1\|6399979_6401494_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.2e-145	52.5
WP_158491235.1\|6401713_6402886_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_038410302.1\|6403029_6403659_+	hypothetical protein	A0A2H4JFQ3	uncultured_Caudovirales_phage	1.2e-36	38.2
WP_038410304.1\|6404579_6405095_-	hypothetical protein	NA	NA	NA	NA
WP_144241798.1\|6405203_6406463_-	hypothetical protein	NA	NA	NA	NA
WP_144241799.1\|6406643_6406919_-	hypothetical protein	NA	NA	NA	NA
WP_038410306.1\|6407091_6408018_-	hypothetical protein	NA	NA	NA	NA
WP_038410513.1\|6408014_6408335_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

6411655 : 6472396

Erysipelothrix_phage(21.43%)

transposase,tRNA,integrase

attL 6425644:6425658|attR 6448127:6448141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080708201.1\|6411655_6413512_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_038410310.1\|6414323_6414734_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_024087120.1\|6414811_6415234_-	hypothetical protein	NA	NA	NA	NA
WP_038410515.1\|6415498_6416377_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023663225.1\|6416397_6416859_-	endoribonuclease L-PSP	NA	NA	NA	NA
WP_026140367.1\|6417171_6420189_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	7.9e-75	26.0
WP_026140368.1\|6420185_6420551_+	hypothetical protein	NA	NA	NA	NA
WP_032805095.1\|6420844_6421057_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_017849613.1\|6421218_6421455_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_017849614.1\|6421447_6421810_-	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_017849615.1\|6421806_6422226_-	hypothetical protein	NA	NA	NA	NA
WP_031633059.1\|6422246_6423926_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-37	27.3
WP_003131881.1\|6423958_6424393_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_003131880.1\|6424405_6424684_-	mercury resistance system periplasmic binding protein MerP	A0A218MNH0	uncultured_virus	1.0e-08	47.8
WP_023102385.1\|6424697_6425048_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_023102386.1\|6425100_6425574_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
6425644:6425658	attL	NA	NA	NA	NA
WP_033869425.1\|6426642_6427059_+	SufE family protein	NA	NA	NA	NA
WP_034389870.1\|6427062_6427395_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.7e-15	56.1
WP_034389874.1\|6427391_6427865_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_033869424.1\|6428027_6428369_-	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_033917449.1\|6428365_6429004_-	organomercurial lyase MerB	NA	NA	NA	NA
WP_033869423.1\|6429087_6429741_-	phenylmercury resistance protein MerG	NA	NA	NA	NA
WP_034036508.1\|6429776_6431462_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-36	28.3
WP_003131872.1\|6431533_6431809_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_033869416.1\|6431822_6432173_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_003131870.1\|6432244_6432685_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_033979951.1\|6434966_6435299_+	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_005303925.1\|6435502_6435937_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|6436008_6436359_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_011405607.1\|6436372_6436648_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_011405608.1\|6436835_6438545_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-34	27.1
WP_011405609.1\|6438580_6439234_+	phenylmercury resistance protein MerG	NA	NA	NA	NA
WP_080708202.1\|6439314_6439962_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_072201471.1\|6440167_6440380_-	hypothetical protein	NA	NA	NA	NA
WP_001138064.1\|6441193_6444160_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_034000036.1\|6444642_6445614_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_038408847.1\|6446944_6448459_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.2e-145	52.5
6448127:6448141	attR	NA	NA	NA	NA
WP_038408850.1\|6448476_6449232_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	55.1
WP_049870842.1\|6451428_6452262_-	hypothetical protein	NA	NA	NA	NA
WP_080708204.1\|6452254_6453886_-	AAA family ATPase	NA	NA	NA	NA
WP_038410314.1\|6455191_6455920_+	serine/threonine protein phosphatase	A0A292GAR7	Xanthomonas_phage	3.1e-25	33.5
WP_038410315.1\|6456253_6458209_+	AAA family ATPase	NA	NA	NA	NA
WP_038410316.1\|6458205_6459903_+	ATP-dependent helicase	S5MMD7	Bacillus_phage	5.2e-07	20.3
WP_038410317.1\|6460428_6460794_+	hypothetical protein	NA	NA	NA	NA
WP_144241802.1\|6461046_6461496_+	hypothetical protein	NA	NA	NA	NA
WP_038410318.1\|6462096_6463647_+	PAS domain-containing protein	NA	NA	NA	NA
WP_038410320.1\|6465190_6465814_+	hypothetical protein	NA	NA	NA	NA
WP_038410321.1\|6465816_6466917_+	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	1.6e-28	29.3
WP_038410322.1\|6467090_6467567_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038410519.1\|6467833_6468568_+	serine/threonine protein phosphatase	A0A2I7SAC8	Vibrio_phage	2.2e-23	31.5
WP_049870844.1\|6468942_6469431_+	hypothetical protein	NA	NA	NA	NA
WP_038410323.1\|6469688_6470165_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038410324.1\|6470881_6472396_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.3e-147	53.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007620

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection