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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007690 Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 8 4 9 0

Results visualization

1. NZ_CP007690
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_1 433450-433550 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_2 672615-672707 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_3 748956-749054 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_4 848356-848441 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_5 891685-891766 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_6 954496-954778 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_7 1088168-1088255 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_8 2030202-2030280 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_9 2265154-2265304 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007690_10 2389072-2389265 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP007690_5 5.1|891709|34|NZ_CP007690|CRISPRCasFinder 891709-891742 34 NZ_CP007690.1 1380669-1380702 0 1.0
NZ_CP007690_5 5.1|891709|34|NZ_CP007690|CRISPRCasFinder 891709-891742 34 NZ_CP007690.1 1469860-1469893 0 1.0
NZ_CP007690_10 10.2|2389151|36|NZ_CP007690|CRT 2389151-2389186 36 NZ_CP007690.1 1172443-1172478 0 1.0
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP007690.1 811323-811348 1 0.962
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP007690.1 2830382-2830407 1 0.962
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP007690.1 2830438-2830463 1 0.962
NZ_CP007690_6 6.1|954526|26|NZ_CP007690|CRT 954526-954551 26 NZ_CP007690.1 954470-954495 1 0.962
NZ_CP007690_6 6.3|954640|26|NZ_CP007690|CRT 954640-954665 26 NZ_CP007690.1 848442-848467 1 0.962
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 848422-848454 1 0.97
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 1172499-1172531 1 0.97
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 1380624-1380656 1 0.97
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 1695138-1695170 1 0.97
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 2665033-2665065 1 0.97
NZ_CP007690_10 10.2|2389151|36|NZ_CP007690|CRT 2389151-2389186 36 NZ_CP007690.1 1873591-1873626 1 0.972
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP007690.1 811379-811404 2 0.923
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP007690.1 954470-954495 2 0.923
NZ_CP007690_6 6.1|954526|26|NZ_CP007690|CRT 954526-954551 26 NZ_CP007690.1 811323-811348 2 0.923
NZ_CP007690_6 6.1|954526|26|NZ_CP007690|CRT 954526-954551 26 NZ_CP007690.1 2830382-2830407 2 0.923
NZ_CP007690_6 6.1|954526|26|NZ_CP007690|CRT 954526-954551 26 NZ_CP007690.1 2830438-2830463 2 0.923
NZ_CP007690_6 6.3|954640|26|NZ_CP007690|CRT 954640-954665 26 NZ_CP007690.1 394783-394808 2 0.923
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NZ_CP007690.1 1469906-1469938 2 0.939
NZ_CP007690_10 10.1|2389095|33|NZ_CP007690|CRT 2389095-2389127 33 NZ_CP007690.1 848422-848454 2 0.939
NZ_CP007690_10 10.1|2389095|33|NZ_CP007690|CRT 2389095-2389127 33 NZ_CP007690.1 1172499-1172531 2 0.939
NZ_CP007690_10 10.1|2389095|33|NZ_CP007690|CRT 2389095-2389127 33 NZ_CP007690.1 1380624-1380656 2 0.939
NZ_CP007690_10 10.1|2389095|33|NZ_CP007690|CRT 2389095-2389127 33 NZ_CP007690.1 1469906-1469938 2 0.939
NZ_CP007690_10 10.1|2389095|33|NZ_CP007690|CRT 2389095-2389127 33 NZ_CP007690.1 2665033-2665065 2 0.939
NZ_CP007690_10 10.2|2389151|36|NZ_CP007690|CRT 2389151-2389186 36 NZ_CP007690.1 1695077-1695112 2 0.944
NZ_CP007690_10 10.2|2389151|36|NZ_CP007690|CRT 2389151-2389186 36 NZ_CP007690.1 2041028-2041063 2 0.944
NZ_CP007690_10 10.3|2389210|33|NZ_CP007690|CRT 2389210-2389242 33 NZ_CP007690.1 848422-848454 2 0.939
NZ_CP007690_10 10.3|2389210|33|NZ_CP007690|CRT 2389210-2389242 33 NZ_CP007690.1 1172499-1172531 2 0.939
NZ_CP007690_10 10.3|2389210|33|NZ_CP007690|CRT 2389210-2389242 33 NZ_CP007690.1 1380624-1380656 2 0.939
NZ_CP007690_10 10.3|2389210|33|NZ_CP007690|CRT 2389210-2389242 33 NZ_CP007690.1 2665033-2665065 2 0.939

1. spacer 5.1|891709|34|NZ_CP007690|CRISPRCasFinder matches to position: 1380669-1380702, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|891709|34|NZ_CP007690|CRISPRCasFinder matches to position: 1469860-1469893, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 10.2|2389151|36|NZ_CP007690|CRT matches to position: 1172443-1172478, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to position: 811323-811348, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

5. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to position: 2830382-2830407, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

6. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to position: 2830438-2830463, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

7. spacer 6.1|954526|26|NZ_CP007690|CRT matches to position: 954470-954495, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 6.3|954640|26|NZ_CP007690|CRT matches to position: 848442-848467, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 848422-848454, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 1172499-1172531, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 1380624-1380656, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 1695138-1695170, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

13. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 2665033-2665065, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 10.2|2389151|36|NZ_CP007690|CRT matches to position: 1873591-1873626, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to position: 811379-811404, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to position: 954470-954495, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 6.1|954526|26|NZ_CP007690|CRT matches to position: 811323-811348, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

18. spacer 6.1|954526|26|NZ_CP007690|CRT matches to position: 2830382-2830407, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

19. spacer 6.1|954526|26|NZ_CP007690|CRT matches to position: 2830438-2830463, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

20. spacer 6.3|954640|26|NZ_CP007690|CRT matches to position: 394783-394808, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to position: 1469906-1469938, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 10.1|2389095|33|NZ_CP007690|CRT matches to position: 848422-848454, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 10.1|2389095|33|NZ_CP007690|CRT matches to position: 1172499-1172531, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 10.1|2389095|33|NZ_CP007690|CRT matches to position: 1380624-1380656, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 10.1|2389095|33|NZ_CP007690|CRT matches to position: 1469906-1469938, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

26. spacer 10.1|2389095|33|NZ_CP007690|CRT matches to position: 2665033-2665065, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 10.2|2389151|36|NZ_CP007690|CRT matches to position: 1695077-1695112, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 10.2|2389151|36|NZ_CP007690|CRT matches to position: 2041028-2041063, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 10.3|2389210|33|NZ_CP007690|CRT matches to position: 848422-848454, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 10.3|2389210|33|NZ_CP007690|CRT matches to position: 1172499-1172531, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 10.3|2389210|33|NZ_CP007690|CRT matches to position: 1380624-1380656, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 10.3|2389210|33|NZ_CP007690|CRT matches to position: 2665033-2665065, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007690_6 6.4|954696|53|NZ_CP007690|CRT 954696-954748 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP007690_4 4.1|848386|26|NZ_CP007690|CRISPRCasFinder 848386-848411 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP007690_6 6.3|954640|26|NZ_CP007690|CRT 954640-954665 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP007690_8 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder 2030225-2030257 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 6.4|954696|53|NZ_CP007690|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 4.1|848386|26|NZ_CP007690|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 6.3|954640|26|NZ_CP007690|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 8.1|2030225|33|NZ_CP007690|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 780014 : 787834 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 799806 : 814537 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 893247 : 912477 25 Staphylococcus_phage(63.16%) capsid,terminase,integrase attL 895784:895800|attR 909740:909756
DBSCAN-SWA_4 1073392 : 1081865 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1523632 : 1610869 105 Staphylococcus_phage(84.21%) capsid,plate,protease,portal,terminase,tail,head,holin,tRNA,integrase attL 1559994:1560014|attR 1605887:1605907
DBSCAN-SWA_6 1666700 : 1675012 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1744149 : 1753192 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1878654 : 1957986 75 Staphylococcus_phage(96.61%) tRNA,transposase,protease NA
DBSCAN-SWA_9 2043124 : 2143364 120 Staphylococcus_phage(88.75%) capsid,protease,portal,terminase,tail,head,holin,tRNA,integrase attL 2104551:2104568|attR 2129481:2129498
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage