CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP005933	Mycoplasma bovis CQ-W70 chromosome, complete genome	1 crisprs	NA	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005933_1

232215-232297

Orphan

Consensus_repeat	Method
TCTGTACGAGATGTGCTTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005933_1

>merge|NZ_CP005933|1|232215-232297|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGAGCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGATTCTGTACGAGATGTGTTTGAAGA

>NZ_CP005933|1|1|232215-232297|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGA	GCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGAT
TCTGTACGAGATGTGTTTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005933.1\|WP_013954630.1\|217592_218990_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP005933.1\|WP_013954649.1\|238573_239161_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_013954651.1\|241434_242817_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_038582854.1\|233053_233821_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
NZ_CP005933.1\|WP_013456603.1\|238190_238460_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP005933.1\|WP_013954641.1\|230514_231510_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP005933.1\|WP_013456076.1\|227739_228069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_013954646.1\|234505_235450_-\|endonuclease	unknown	unknown	gnl\|CDD\|367881
NZ_CP005933.1\|WP_013954635.1\|225595_226570_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP005933.1\|WP_013954650.1\|239254_241423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_013954632.1\|221033_223619_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP005933.1\|WP_013954647.1\|235548_237495_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP005933.1\|WP_013954638.1\|228311_229007_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP005933.1\|WP_013954633.1\|223760_224690_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP005933.1\|WP_013954648.1\|237557_238112_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179388
NZ_CP005933.1\|WP_013954631.1\|219103_221020_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|223265
NZ_CP005933.1\|WP_013954652.1\|242816_243152_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP005933.1\|WP_013954653.1\|243270_243969_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_013954636.1\|226562_227270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005933.1\|WP_013954634.1\|224691_225408_+\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000

Protein	Function_ID	Function_description	E-value
NZ_CP005933.1\|WP_013954630.1\|217592_218990_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	5.9383e-07
NZ_CP005933.1\|WP_038582854.1\|233053_233821_-\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	5.22796e-06
NZ_CP005933.1\|WP_013954641.1\|230514_231510_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.7244e-164
NZ_CP005933.1\|WP_013954646.1\|234505_235450_-\|endonuclease	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	5.57394e-50
NZ_CP005933.1\|WP_013954635.1\|225595_226570_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.47396e-81
NZ_CP005933.1\|WP_013954632.1\|221033_223619_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP005933.1\|WP_013954647.1\|235548_237495_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP005933.1\|WP_013954638.1\|228311_229007_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	1.24583e-40
NZ_CP005933.1\|WP_013954648.1\|237557_238112_-\|inorganic-diphosphatase	gnl\|CDD\|179388	PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.	6.84527e-119
NZ_CP005933.1\|WP_013456603.1\|238190_238460_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.77072e-16
NZ_CP005933.1\|WP_013954631.1\|219103_221020_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|223265	COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].	0
NZ_CP005933.1\|WP_013954652.1\|242816_243152_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	5.20672e-31
NZ_CP005933.1\|WP_013954633.1\|223760_224690_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19348e-56
NZ_CP005933.1\|WP_013954634.1\|224691_225408_+\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	1.55849e-72

>NZ_CP005933.1|WP_013954641.1|230514_231510_-|ribose-phosphate-pyrophosphokinase
MNNNNALLFGMPNCIKLAERISKMINIPLSTLTLTKFADGETMPVSDEAVRGKDVYIIASTSRPVNDNLMILYLFIDSLKRASAKSINIALAYYGYARQDRKASGRQPIGAKLVADFLETAGASKIITVDLHNSAIQGFFNIPIDDLKASFTLAKAIKRSHEKFTVVSPDHGGTVRARSLAELISNDIKISIIDKRRTGINQTEVMGLIGDVKDQNAVIIDDIIDTGGTIIKAAETLKQYGAKKIVIAATHGIFSKGFDIFENNPAVEKVIITDSIDNDELLDKYKKLEIVSLDRFLGSVIDCSINGKSISMLYDKFAKEIKENESYKFLN
>NZ_CP005933.1|WP_013954638.1|228311_229007_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNHINKEYLLNKYSKQIPLLYRYAQMIYEKNKVMNICGFDSVDEIFNQGILGSILVFENAMNEYNHDFVNKKILDIGAGAGFPSVPLLIALDNKFELVIMESITKRCTFLESVKNEFNLNLTIINARAEEINDYNSYFDYICARAVGSVIKIYLMTNHHLAQNGYFILPKGKNYHAEIDEFKNKFTLEKDNISSFEYEDSINNENSSLVLIKKTKPTPRGWPWKWAKIKNY
>NZ_CP005933.1|WP_013456076.1|227739_228069_+|hypothetical-protein
MSRTKKLSISYLITYPIAFIVTVVLLVLYGRQLLDFAQQKEGFTGNLALWTVYLLYAVVIVVPFIMLIINILLIFFNVGTIARILLIVGLFVPWCSFVGALIALIRPGK
>NZ_CP005933.1|WP_013954636.1|226562_227270_+|hypothetical-protein
MNNYSEVAIELQSKLEEAINNIFEITNNEISINVEDVNILQRDNNSINSSTAIGYILEEYLIRKIEQYLSSPDCHFEFSMKPNNKANTSSYDFSLVYKDHLFYINLKANRNVNDAIAAINRLYSDYVEYEGKNPLHYLVFKTNYDIDKSKISNQNKIIIKGTYSFFLEQIDFSKGWKQDHRSWSPGGKLNSGRLIVSKNFFNENQIEISKISYEQTRAYLEEMFNKNFSVAEYEE
>NZ_CP005933.1|WP_013954635.1|225595_226570_+|DNA-cytosine-methyltransferase
MGKRGIIDLFAGAGGLTLGFTQNNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRNELESNWKNKTDLVIGGFPCQGFSLAGRRSKDDERNQLYKYTIDVISRLQPYGFVLENVKGILSFRESDNELVVDKIQKMLAKENYYTKFILLDSSNFGVPQKRERVIFIGCKDKEKVDKVISLLSKHKEKIVTVFDAIGHLEKVTDDKEIPNHIFSKHSEEIKERFMKLKEGESLSKSFSDAFRKLSYDKPSPTVKENHGGVHVHPVLPRVLTPRELANLQSFPEDFIFLGTKSNVLKQIGNAVPVKLSYEIAKIVNKVFFNE
>NZ_CP005933.1|WP_013954634.1|224691_225408_+|ribonuclease-HIII
MQFLDLDVESSLLENKSIIGVDEVGVGDYFGPLCASAVFIDAQNVNKVAELGIKDSKKLSDKRIKELALKLKNSGLIHYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSISVAAASILARDQFLTLVSKMNDEYNTVFPLGAGPKVNAFAKDFFAKHSYDEEVIKKTCKKSFKMNILN
>NZ_CP005933.1|WP_013954633.1|223760_224690_+|Cof-type-HAD-IIB-family-hydrolase
MSTLTNNKKEKFLFAIDLDGTLLSSSRENIVPENCIKAIQRAKDEGHVVCIFTGRPWRSTKPIYDMLGLNTVVSNYNGAQIHNPKDDNFIPHIKYLNLNEMLYILGDQKVKKEISNLAIEGPGWVQLEHRDDDIEAVFGFSSAEKFTVGINLNKVPLSPTGIVFDVKETTDAEELRRYLRARYGDLGEFSYWSKGEGLTPVFDITNVTVNKGRALSLLSRYYGVDLDHTIAFGDGFNDVPMFKVATVSVVLGNAADLVKRHATVRLKKTNKEGGVGDYINKFLDNPEKEIAKSKAMALKMRKVSIQEEE
>NZ_CP005933.1|WP_013954632.1|221033_223619_+|DNA-topoisomerase-IV-subunit-A
MNKKKEQQLNDLLSKIVRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKLAKIIQGPDFPTGGVIYGTDGIYEAFERGKGRITLASRYNVYSDNKYKYIEITEIPYGVIKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDAYLKHVKDVKVKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSEDSKQGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHTFMFEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKEEEVFLGISKFGYIKKVSKKTYESNLITTYGIKEDDNILFYDIASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFVAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDVPIYGLKSNGNKACYLANGDELVSFTVVKPNDSVALVSQSNKVRLINVSEISRVSKQNKGVSIFSKGRLNNAIVQCDPLLDETKLLLVNNQGQAHFEKIQNYVKQASTKFINFDADDIRTISLISNYSSTTNDNEFHSYEKESSDENQLMNKAIETKNSIDLSIDEILSKVDELLKKDKK
>NZ_CP005933.1|WP_013954631.1|219103_221020_+|DNA-topoisomerase-IV-subunit-B
MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAVILKNDGSVVVSDNGRGIPVGKTPSGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSVVNALSNKLKCLVYRDKHVYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKKAKFNFETIAERLRESSFLISNLSIKLLDEQSGKSEEFKYSNGIKAFVEFINDSKTALFNVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALPPLFKLSINKGQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKNVNFTMEDDFEI
>NZ_CP005933.1|WP_013954630.1|217592_218990_+|CvpA-family-protein
MKIIESLENIAFNSWSILIPIILVIFIVILAIVSGLRRGIYGGLIILLFGLSGWIIGIFAAKPLVDVIVIKTKITLPGNKQIDAEILRKMFYGIAMFVIQILFLIVGEIISLLLRKWIKKPLKNMRENKVSSVGSRSLGAVLSTAGIVPCAILTANVTGFLTTNNKVIDANDKMLNYISFKKAEGVSKYTPGLIASAKIGNDLLNASSGSKLDETVIGAFEWYLQQFANPDNYVLLSVSKDGQAKPIISTNALKNINRKEEQEKVLQGLIPFILGDSSVKKNGITLFFNFNTSSAGAFKYDSNSGKIEINTDNSENTQLKVKNIGKISNIFQLYTATPESFRILEYLSKLGLKDAKASEGFDEIYSLVDQTEPVWDILNAAQLKFNMNPSYRIKVYDREYVKRMKDILFDLFEKNTGGKFKYDRKELNEEKMKSWVTIQTIHQKIYWIVSSVIDNVFITPENVSN
>NZ_CP005933.1|WP_038582854.1|233053_233821_-|hypothetical-protein
MPNKVVITGFKDSLINENIIIKPEPIPPINRENPIMKDAETSTNDESSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSEPEKANSELSNERKIKEKGYRLNELTAYPYDLIDVDDDANKDELAKKLNDVITHKNGAIAIVGGSFFSKCNNLQLTGLSINKSIKSETKSQISTHNKLIGFFEGSDGYGIKVGHHGEANSKKYLFKWRLVKEDGNFGPKVYEQIIDLS
>NZ_CP005933.1|WP_013954646.1|234505_235450_-|endonuclease
MMNSKMIKHKFLVSLGLISAPVLSLTVLSSTGCNNKNSTTDDNYLIPEKSFYEKSNYYDSLEGLNGNKLYSELIKIQHNHLSGIKSYRYLKTIYKDAFKDLYYEKDGSLLDIYSENPIGKDPYNYSFNDSGSSAKSEGLGFNREHLVPQSWFKREKLARQDAHHVWPADILVNNKRDNYPFGKVTNAIFTSKNGTKIDSYLAEPIDEFKGDIARAHLYFAITHASRYKMHNKGNEVFKFFDNKPLVNKYFDTYTKWAKKDQINLFDIVRNNEIAKHQNGLRNPFSDYPELIDLIINPGNKVFVNKGILKSNIAV
>NZ_CP005933.1|WP_013954647.1|235548_237495_+|transketolase
MNINQKVVASMQAIALDSINNAGGGHIGSAIDISPIMYAVVAKHMKISADHPKWISRDRLILSAGHASMSFYSMMHFLGLLSLDEMKNHKRKHSKTPSHPETDAFDFVDASTGPLGQGIAMGVGMAIAEKKMSLKINKGNTKVIDNYTYVIAGDGCLQEGITHEALQIASVMKLNKFILIHDYNKIQLDTKVSDVSNVDLLAYFKALNFNVIEINEASYDNIDKAITEAKKSDRPTYIMVHNIIAPFTPFENTTKGHHGILNSEQTIEFKKAIGLENKAPFEYDSDVYEYGRTIMANKAKSYEEWLVELDNHKKQFPWIHSLLLETINNETNYDFSNILVKQDDLAIRDYFKAFSEIVDFSYPFLIGGGADVGSSTKVRFADSILDYGQRIDYGVREFAMTAINNGINLYGGLKTADSTFLAFSDYAKGALRLGGIMKLPAVHLYSHDSYLVGDDGPTHQPIEQVTVLRSIPNLLVIRPCDKYELVMGLNYAYNNTSTQVAIIGTRQPIKTMHSSKFSEFMAASLVYENKEFDISILSSGSEVELAYKTAVELKNHGIIANVISVPVLQKLVDNDELAIKLKLDKKPMFAIEASNDPLWYKLSKYNKIDGHFASEYGFSDKGNVVYDSMGFNVNSIVDKVKQFLSKNA
>NZ_CP005933.1|WP_013954648.1|237557_238112_-|inorganic-diphosphatase
MSNVIEIRIEIPKNSNIKYEYNREDGQIHVDRILRGDFKYPCNYGFIPNALDWDGDELDVLLYSPETFIPGVVVNARIIGAMKMNDSGETDTKLIAVHDDDYRLANINSLKELPEPFLLDIETFFNNYKNWKKPNLTKVLGFEDEKWAFAELEECKELMDKYGKMPKKEFVAKMMKEHPEKYTF
>NZ_CP005933.1|WP_013456603.1|238190_238460_+|30S-ribosomal-protein-S20
MANIKSKVKSIAKQEEFRQRNNAMKTRVRKAIRAAREAVLAKEEGFEKKVFEAHSIIATAVQKGIYHPNKGARKSSRLDHFVNEQKSKQ
>NZ_CP005933.1|WP_013954649.1|238573_239161_-|hypothetical-protein
MQMIIKTTAIEVLRELQKLLESENINYSLGLSNYYEYKNKPELFLINDIEVCLWHKDFYFLLKKYPNHFILPENLPFKSLAPYYKFQGSSIKINIIVGTSDEKINYWYKFRNYKRLIYWGNSKKHWFYYFLGHRTQRVYLHDLVNDLVVERYTKFIILNSEIDKFKAFDNLNFNKRFFVTEKGITIPFFEPFRSL
>NZ_CP005933.1|WP_013954650.1|239254_241423_+|hypothetical-protein
MGKKKTPFFERLLQKNAEQENKNKTTGKSKKSRSWKIATTSTVLVLAVATGITVPLVINSTKKNFIDGYASNTNVASAKIGDHNLDLNFGDFKDIYQNHNTSTSEERLKEIDKIILYYLYDQEQKASAEYQKLWNDSKRSDEKDNNSFRLPTLDELKTKFKNELVDIENNMKLQFGTANWQTEFNKHLVQKYNGAKNIDEAVKNKTFEHIKSDALRRFRLINGDSKKDEIERKGKDGKHVFGWWHKDNNENKFIELEDKSKLALATDSFVFKDSYKSIDPFIDSYIANEKPRIISEFTIPGIAPAKKNEKWKIDKNIFLRYLFYAKEGTFGLSKVTEGYNVVKEKFNSFDHYIKSVVDKANGKNILPDEAIQYSSILNMFSTSKEDIKKNWGTSGLTSISELVTGDNFQKFLANNPKLLFGENYSSGSTNGNKPKEIELFEKIKEISEKIAEVAKSSNGMSGSSSTGSSSNNNGALISNNTQATEYNTMLEKFFTEVNESQNKGLTEKVFEENILKKFVAIFEDKEKIQTVYKVKFNGNNIGAKNVTGILSPEGFKLLIFGDEIKKDELVKMIKNDFILNNKYKKQLGVRYNALQKLNKQLSRNEYILKMLQDNEFKEYLKTQNNNFATDQNGKKLENVKYNEQSIKDLITSSTAAIQFDKISNFIKLSKAAATWIETRAKNNYDELFELKDGKAYFKHNKDKTAASLVLEYLKKQFNLEAK
>NZ_CP005933.1|WP_013954651.1|241434_242817_+|hypothetical-protein
MKKISKKLLASLSLFTIPSVAIISAKCGNDVETTERLNQQKDLKDAKRVTELEEIWKNFALSYIYKIKPSNKHDAKSWKQNFEKEFQNQQSQLFKDSYDAYKIFALDQLSKNEYYFVEKSLEWKKNDVFKSNPFNWISTKNFPGETDQKDFIRIWMEDKTGIRKEINNMLLVKAYFDISELKKLQTIANNIANAGKADKDKSKDQKFEYFVGGKDAKFDLDHYNLVKYAFENKYIQLWKRTFDDKTTSNDVFTRKEIKNTISSKDDFNAFFKDTAEAEKKAKEWEIITKNNEDKELQGYAGIQKDPGTYGLNWNETDNKRRVTGSGTYGVYDALNSILISFNDLASKSSVGVKDKDGKSIVSYINQIVPVGKKIKLKTKEDYTKDKVEDSKLKETEVLSFEGTIYKEYLNKLAYLFYGKDSKNLLEKAIEAFAHLGVKIKVNKEIAPLYEQLKNKVWVEK
>NZ_CP005933.1|WP_013954652.1|242816_243152_+|HIT-family-protein
MDDLFLKIISGEEEGKIFYEDEYCVAFYDKFPIQPGHFLVVPRIKSKNIAEADDFTAGHLINTARKLGKQEVLDKGIAGFKILINTGRSADQSIFHTHVHVIPYKEKSKDN
>NZ_CP005933.1|WP_013954653.1|243270_243969_+|hypothetical-protein
MNKRKLLLMSSLMSVAPIMVAAKCNPDSDNIVEFRLGIKDLNLRFANYGAFSSKELDKMLKQKPLKDGEFTVVYPSQEELEKEAKIIRDFFEKEETKKIPSYQTIYKETYETIVLGKRPVMLSDFTNEYLWSRDLVKIIDNGSIKNKNKLKLIINQFIDNANGSTTAHFRIEHSDDQRIYEVVGDSNGYIIQFNGKLKTISPNHYHLTKEIIENNKGNLAVLLKANETTQRK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

75170 : 86531

Bodo_saltans_virus(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954527.1\|75170_76151_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	3.9e-15	27.1
WP_013954528.1\|76154_76976_+	alpha/beta hydrolase	G9E3U1	Emiliania_huxleyi_virus	2.3e-08	32.5
WP_013954529.1\|77059_77824_+	hypothetical protein	NA	NA	NA	NA
WP_013954530.1\|77816_78797_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	8.1e-53	40.6
WP_013954531.1\|78921_83298_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	6.2e-12	31.8
WP_013954532.1\|83703_84927_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.5e-61	35.1
WP_013456569.1\|84916_85882_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.6e-29	40.9
WP_013954533.1\|85871_86531_+	uracil-DNA glycosylase	A0A068EP41	Falconid_herpesvirus	1.6e-28	36.4

DBSCAN-SWA_2

312467 : 400401

Tupanvirus(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038582687.1\|312467_313712_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.3e-09	27.0
WP_013456216.1\|314153_315503_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-13	24.0
WP_013954692.1\|315495_317106_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_013954693.1\|317171_318611_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_013954694.1\|318722_320810_-	peptidase S41	NA	NA	NA	NA
WP_013954695.1\|320773_322165_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_013954696.1\|322167_324477_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_013954697.1\|324795_326157_-	variable surface lipoprotein	NA	NA	NA	NA
WP_013954698.1\|326676_327510_+	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	3.6e-54	45.7
WP_013954699.1\|327816_328770_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_013954700.1\|328819_329716_+	elongation factor Ts	NA	NA	NA	NA
WP_038582690.1\|329749_331624_-	peptidase S41	NA	NA	NA	NA
WP_013954702.1\|331647_332151_-	dUTP diphosphatase	S6AVW3	Thermus_phage	5.6e-10	32.8
WP_078086168.1\|332453_334055_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954704.1\|334441_335806_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013954705.1\|335916_336702_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_013954706.1\|336706_338236_-	RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	2.0e-29	33.7
WP_013954707.1\|338228_340169_-	DNA primase	A0A1S5RFD7	Helicobacter_phage	5.7e-42	35.3
WP_013954708.1\|340210_341587_-\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	3.9e-53	32.0
WP_013954709.1\|341698_343486_-	membrane protein	NA	NA	NA	NA
WP_013954710.1\|343936_345292_+	alkylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013456298.1\|345294_346227_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-07	30.0
WP_013456124.1\|346190_347942_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013456114.1\|348048_348294_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_013456030.1\|348374_350888_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_038582866.1\|351130_352177_+	zinc-dependent alcohol dehydrogenase family protein	A0A0K0KVL7	Prochlorococcus_phage	1.0e-13	26.9
WP_075271040.1\|352325_354176_-	type I DNA topoisomerase	A0A2P1ELA0	Moumouvirus	3.7e-75	32.2
WP_013456432.1\|354543_354981_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_013456362.1\|355022_355421_+	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	9.3e-08	30.3
WP_013456088.1\|355440_355767_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_078086165.1\|357467_358496_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_013456295.1\|358839_359295_-	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA
WP_013954715.1\|359345_361016_-	APC family permease	NA	NA	NA	NA
WP_013954716.1\|361254_362571_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	2.7e-11	25.1
WP_013456122.1\|362639_364343_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	2.0e-14	23.1
WP_013456084.1\|365768_366560_-	aquaporin family protein	M1HQW3	Paramecium_bursaria_Chlorella_virus	7.3e-12	27.5
WP_013954718.1\|366568_368077_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_013456345.1\|368366_369758_-	hypothetical protein	NA	NA	NA	NA
WP_038582872.1\|369890_370877_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_013456401.1\|370893_371862_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_013456470.1\|371975_372719_-	DNA repair protein RecO	NA	NA	NA	NA
WP_013456409.1\|372898_373183_+	hypothetical protein	NA	NA	NA	NA
WP_013456558.1\|373175_374822_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_013456463.1\|374828_375833_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_013456004.1\|375825_376500_+	ribonuclease III	M4QMG4	Micromonas_pusilla_virus	1.2e-18	31.9
WP_013954720.1\|376573_379552_+	AAA family ATPase	NA	NA	NA	NA
WP_013954721.1\|379604_380957_-	YitT family protein	NA	NA	NA	NA
WP_013954722.1\|381051_381888_+	HAD family phosphatase	NA	NA	NA	NA
WP_013954723.1\|381874_382606_-	DNA-processing protein DprA	NA	NA	NA	NA
WP_038582875.1\|382832_383873_+	zinc-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	5.2e-34	29.7
WP_038582700.1\|384198_385227_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013954726.1\|385491_388293_-	C1 family peptidase	NA	NA	NA	NA
WP_013954727.1\|388521_395553_+	hypothetical protein	NA	NA	NA	NA
WP_186003270.1\|396265_397126_-\|transposase	transposase	NA	NA	NA	NA
WP_186003268.1\|397221_397653_-\|transposase	transposase	NA	NA	NA	NA
WP_038582704.1\|398125_399034_+	variable surface lipoprotein	NA	NA	NA	NA
WP_078086165.1\|399372_400401_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3

DBSCAN-SWA_3

887595 : 930192

Staphylococcus_phage(25.0%)

transposase,integrase,tRNA

attL 917475:917492|attR 927508:927525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078086165.1\|887595_888624_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_013955061.1\|888834_889842_+	ECF transporter S component	NA	NA	NA	NA
WP_013456123.1\|890616_891366_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013955063.1\|891764_893609_+	ribonuclease J	NA	NA	NA	NA
WP_013955064.1\|893743_894895_+	hypothetical protein	NA	NA	NA	NA
WP_014829996.1\|895084_897502_+	DUF2779 domain-containing protein	NA	NA	NA	NA
WP_013955066.1\|897519_897828_-	hypothetical protein	NA	NA	NA	NA
WP_013955067.1\|898125_899547_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_013955068.1\|899539_900853_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_013955069.1\|900852_901158_-\|tRNA	glutamyl-tRNA(Gln) amidotransferase	NA	NA	NA	NA
WP_013955070.1\|901163_902018_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_013456616.1\|902029_902608_-	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-11	29.7
WP_013955071.1\|902597_903359_-	segregation/condensation protein A	NA	NA	NA	NA
WP_013456430.1\|903351_904092_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_013456524.1\|904101_904416_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_013456382.1\|904589_905900_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_013456261.1\|905902_906568_-	(d)CMP kinase	NA	NA	NA	NA
WP_014829997.1\|906638_907100_-	hypothetical protein	NA	NA	NA	NA
WP_013955073.1\|907387_908521_-	DnaJ domain-containing protein	A0A1V0SBY2	Catovirus	3.0e-27	32.2
WP_013955074.1\|908758_909100_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_013955075.1\|909273_910509_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	3.3e-59	33.2
WP_013955076.1\|910519_911122_-\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_013456246.1\|911183_912086_+	DegV family protein	NA	NA	NA	NA
WP_014829999.1\|912246_912480_-	acyl carrier protein	NA	NA	NA	NA
WP_013955078.1\|912519_913242_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013456073.1\|913241_914318_-	peptide chain release factor 1	NA	NA	NA	NA
WP_013955080.1\|914443_915016_-	Fic family protein	NA	NA	NA	NA
WP_013955081.1\|915037_916459_-	YitT family protein	NA	NA	NA	NA
917475:917492	attL	NA	NA	NA	NA
WP_038582830.1\|917913_919302_-\|transposase	transposase	NA	NA	NA	NA
WP_013955084.1\|919616_921584_+	type IIA DNA topoisomerase subunit B	G3M9Z3	Bacillus_virus	8.7e-131	41.5
WP_013955085.1\|921706_922021_+	thioredoxin family protein	A0A1X9I9P5	Staphylococcus_phage	1.7e-12	39.0
WP_013955086.1\|922073_922520_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.8e-12	37.4
WP_013955087.1\|922639_923707_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_078086167.1\|923861_925463_+\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013955090.1\|925767_926757_-	DUF285 domain-containing protein	NA	NA	NA	NA
WP_038582834.1\|926872_927082_-	variable surface lipoprotein	NA	NA	NA	NA
WP_013456532.1\|927218_928178_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
927508:927525	attR	NA	NA	NA	NA
WP_013955092.1\|928373_928769_+	hypothetical protein	NA	NA	NA	NA
WP_013955093.1\|928947_930192_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.1e-09	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage