CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006740	Xylella fastidiosa MUL0034, complete genome	1 crisprs	c2c9_V-U4,DEDDh,Cas9_archaeal,c2c8_V-U2,WYL,csa3,cas3,DinG	0	0	14	0
NZ_CP006739	Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence	1 crisprs	NA	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006740_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006740_1

1616181-1616292

Orphan

Consensus_repeat	Method
AACACCAGTGTGGTGCCTTTGAGGCCTTTGCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006740_1

>merge|NZ_CP006740|1|1616181-1616292|CRISPRCasFinder
AACACCAGTGTGGTGCCTTTGAGGCCTTTGCCCACCAGAGATCCAAGGGTGCGCAGTCCAGAGGGCATGGTCATCGCCAACACCAGTGCGGTGCCTTTGAGGCCTTTGCCCA

>NZ_CP006740|1|1|1616181-1616292|CRISPRCasFinder
AACACCAGTGTGGTGCCTTTGAGGCCTTTGCCCA	CCAGAGATCCAAGGGTGCGCAGTCCAGAGGGCATGGTCATCGCC
AACACCAGTGCGGTGCCTTTGAGGCCTTTGCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006740.1\|WP_040123224.1\|1625797_1626853_-\|DNA-primase	unknown	unknown	gnl\|CDD\|223435
NZ_CP006740.1\|WP_004086810.1\|1614511_1614832_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123234.1\|1612852_1613299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123237.1\|1614828_1615614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_004083945.1\|1607143_1607572_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123239.1\|1616327_1616552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_038227995.1\|1626851_1627253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123233.1\|1610174_1612688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP006740.1\|WP_040123370.1\|1627354_1627978_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_155266602.1\|1615610_1615754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_038228002.1\|1620920_1621157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123240.1\|1616624_1616984_-\|DUF2190-family-protein	unknown	unknown	gnl\|CDD\|227758
NZ_CP006740.1\|WP_040123241.1\|1619361_1620924_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227798
NZ_CP006740.1\|WP_040123236.1\|1614041_1614515_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123222.1\|1621233_1623333_-\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|227812
NZ_CP006740.1\|WP_040123235.1\|1613295_1614045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123223.1\|1624334_1625801_-\|virulence-factor	unknown	unknown	gnl\|CDD\|227832
NZ_CP006740.1\|WP_038228344.1\|1623329_1623938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123232.1\|1608994_1610182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006740.1\|WP_040123231.1\|1607562_1609005_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378314

Protein	Function_ID	Function_description	E-value
NZ_CP006740.1\|WP_040123224.1\|1625797_1626853_-\|DNA-primase	gnl\|CDD\|223435	COG0358, DnaG, DNA primase (bacterial type) [DNA replication, recombination, and repair].	1.33252e-79
NZ_CP006740.1\|WP_040123240.1\|1616624_1616984_-\|DUF2190-family-protein	gnl\|CDD\|227758	COG5471, COG5471, Uncharacterized conserved protein [Function unknown].	8.46215e-45
NZ_CP006740.1\|WP_040123241.1\|1619361_1620924_-\|phage-portal-protein	gnl\|CDD\|227798	COG5511, COG5511, Bacteriophage capsid protein [General function prediction only].	0
NZ_CP006740.1\|WP_040123222.1\|1621233_1623333_-\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|227812	COG5525, COG5525, Phage terminase, large subunit GpA [Replication, recombination and repair].	0
NZ_CP006740.1\|WP_040123223.1\|1624334_1625801_-\|virulence-factor	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	0
NZ_CP006740.1\|WP_040123233.1\|1610174_1612688_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	6.80093e-06
NZ_CP006740.1\|WP_040123231.1\|1607562_1609005_-\|DUF2163-domain-containing-protein	gnl\|CDD\|378314	pfam09931, DUF2163, Uncharacterized conserved protein (DUF2163). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.75714e-23

>NZ_CP006740.1|WP_155266602.1|1615610_1615754_-|hypothetical-protein
MLISSCLLIVALLLWISTGLGAFFYGQYLGIQTTCRAQVRTAHQGVL
>NZ_CP006740.1|WP_040123237.1|1614828_1615614_-|hypothetical-protein
MTDLLKITVDADAMLGRRFTALESQHLPFAIVQACNTTAFQIRDTWKRTALRIFDRPTPLTINAALYKKATKQKLWAEIFLRDEAFKGTPPATYLLPQVEGGTRRLKAMERLLMSMQIMPRHMFAVAGDGAPRDRYGNVNVGQVRQILSQLRAGLEAGYISNETPERKARRLKRQRQRGGGGSYFVVKKQRGRLRPGIYERVTFGSGSAARSMFIFTTYVHYTPRYNIFGLAQKEWDRMMPFYFNRELQKAIDTSIYRGRA
>NZ_CP006740.1|WP_004086810.1|1614511_1614832_-|hypothetical-protein
MSEATFKHAFDAAFFDAWADVVGSIDGTYTSPRGVITPVQVLLDQGVLQFGDDLMPVSAYSTFITFRRDQIEPEPNATLTLAQTTYTLAQRVDSSDASLSKWAVRP
>NZ_CP006740.1|WP_040123236.1|1614041_1614515_-|hypothetical-protein
MNSPRATLLSSVEAVLTQITTAAGYLTDVGRTFTLEPAPVLGETTDACITVIWTRQERATIAALTHTHRLTTFQVIAKVPVSFSDAQARLDAITTDIETAMNAKQAHFPVGFHCPQYQVAEPLIPQQHTVGWIGVCITYTSHIPIHPPAPSSTEHQP
>NZ_CP006740.1|WP_040123235.1|1613295_1614045_-|hypothetical-protein
MTHTDYSYVGSGQVLIKEHGAAAPFLPIGNCSKLEFSPQVNTLQLQDFTTPGGGIRNRIDRVNDVQFTLTFHDFSAENFARFLRGTSTVTDLGTVAAEPVVGYVGGWTPLAKIAATITAVKPYGGGTPYTAGEDYLLEHGGLTIPLGSTIPIPEPGAPNIQVDYTFARHTVTEAFVHAAQQYTLVFTGMNEARSGKPVRVIAHKISGGVLSTLGLLGEDYGAGDVSGSLLADTTKEAGLSKFFQVVVVQ
>NZ_CP006740.1|WP_040123234.1|1612852_1613299_-|hypothetical-protein
MMTPDTLDILDPPPHLVPFRGESLHIRPLTIGQLPQFVRLTRPLLDALLDVPLDTLPQADAALLDALLTLIAEHGDAAIAAAALLTDKPIEWIQAGDPAEFIALVQAIFAVNRDFFTHRLTAQPVTPVPLAAGTGPIPSNTSLSTATQ
>NZ_CP006740.1|WP_040123233.1|1610174_1612688_-|hypothetical-protein
MASSRGATLRVRISADLADIKQGLGLLRGELAKVKVAASSAAPQTASWTKGIDSVRQALGNLAGAYVGVQTITAAIRGVFTALGQMDRMDKFVQMSGVSAENISKLAYAAKSSSVDVETLAKGIGRLNKDIISGDSIIHKLGISLKDAAGNTRDVSHVFGELADIFAQLPDGAEKAALAAKLFGNRMGPGLIPVLNLGKDGLKEFGDQAEATGNVMSTQAAQAASHFSDQLGLLKSQATGMFNIAAQQLLPVLTSVVKTLNDSGEAAHSAATGGRALAAAFKVVVAAGIIVKNVIEGMVNVLAFLGTTAFNVGKFITQSLVGSFRLLGDAVKGLVSGRNPLDVFNAYLSGAAQRAKQSQADLADMKNGIVGGFAAAKQGVFESARDILNGVSALFSSIENDTKGVEQSANRASTATQGLLDKVRRLLAGEGGNTAHKNDTRDQLAAIAAAASLVQDEVKRAITALDQQFSDIKDADKSAAAITAYYEKRITLQQRLIDLQIQQARAELALATESGKRLQIEAKITLLERDRAQVAIDMARQRFKAQQELNQKIADSFGHRLSGITSNLATHESSISAQVNAGMLGMAEGERQLNTLRARALETLRALRTEQQQYLDSMKADGKDVTDAVQGLAQIDQAIAEVTARQQVWRSHLEDISSGALGGFFNDLIEGAKSFKDAFTDMVRSFLQGVAQMMARQLALKAISTIMASLGGGSSIGALLGAKVALAHSGGMAGALRLHRNNINPLLFGTAPRYHSGGVAGLHHDEIPAILKRGEIVRTKQQEAALQTRLNAGQGAPGPLHNIIVFGEDELANALAGAAGEKVIVSHVRRNRGAING
>NZ_CP006740.1|WP_040123232.1|1608994_1610182_-|hypothetical-protein
MADPVAWTFAPGGEYTETFDWLTDVLQAPTGGTQHRRLRQSPRATLRFSALESGASRRWMDVLLRAHSAARWWVPIAIDARALAVTAAAGATTLVVAVQGARFTQDGHVLIIGPDPRHYEVHRITALGEHTLTLATELSFSWGVGTRLYPVRLGRLSEPPQVGRFTADDSALVSLQFRLEDPLDSSAAIPSATYRGYPVFDTLPPVWTSDPVWVPHRHTHVQDDTISTPWMTDTAGVALGTTTMQYAPDDAAAILTFRSILFALAGRWAPVWVPSWIHDLPLAADVRAGQRTIDILGPLLSTPSGALQANRRDIRIALYSGAVWYRRITAVTSRGSQIERLTLDSRLPAAFTLTQVKMISFITFSVQDADTAVLRYFGPEAAQCQIVWKELHHAL
>NZ_CP006740.1|WP_040123231.1|1607562_1609005_-|DUF2163-domain-containing-protein
MRFSAFELGRFTGRPVRLFVFTRQHLTWRFANSDRDIVSGGFTYLAARIDRSDIQHTTEREKDQITITFPYLLNPAADPLPVTQELGNQWRPYHPVDVIRVVCMVMHVGDTDPPQVEWMGRVIQPRFSDTEMELTCAPHSSIALAHNQGAKFQSNCWKTVYSTGLRGCNLSTGEHRVTGRVARIEQLPTDPPQGAHVLVPDMAAHLASLAGQVATWTYEVPVPHSGTVASVIKFHVRLNNVTDIDVGTVLHWTAADGVAHRGTVAARFGTVVVLTVTDGITAATVCHWSVAQARQGTATIMQAYHAYDWVSQAAGGSSSGFSWDDASGLHDAHSGTAWSVTYTTRSALVLSDVTGLEEGSSITVLLSGSAVSGRLSAVAGLQLTATQFASAVYSLEGGTLTYTDANGLLIRRSIASHTLGSATLTLSAGGPNPVVNDEITVLPTCPRTWDACAARGNTIHFGGAVYRPLHTPEGVSMSWG
>NZ_CP006740.1|WP_004083945.1|1607143_1607572_-|hypothetical-protein
MGLIARLRRWYHLWVWRLRYWWYDTPSGVCAQHWALGLGVLVLIVQLVRVCVATALPAPHGAPAQAVYWWVWQLAIAVVAAYVSAALRPKPEPVKPQQAQVPTVQDGQAVKHHFGTVWVGDEFILAWKMQGTIPIKTKGGKK
>NZ_CP006740.1|WP_040123239.1|1616327_1616552_-|hypothetical-protein
MFSNERTDHKIASAVAAAMVKSAPPVSAAVLTGDTLIEWMTCTYILLQVVYLLWKWRVDWKRRKVKQQPGADHA
>NZ_CP006740.1|WP_040123240.1|1616624_1616984_-|DUF2190-family-protein
MANNFIKPGKHLTYTATTAIKSGSVVLFGEELCVALNTINAGDSGELAHEGVFELPKAKGTGIREGTRPVWSVTTHEALTGGSPEKGDLINSCLAVETALAAAVKVKVKLLPGCGRWQA
>NZ_CP006740.1|WP_040123241.1|1619361_1620924_-|phage-portal-protein
MTTASPRLHRLVAAFDRSLLQLAPAWAASRAQSRVKAVAYRQAYEAAEKTHLRQASRDFGSGNTIVTMTGVALRNQARHLDRNHDIISGGLSTLVQNIIGPSGINIVPTPRDVDGNLVESLVDAILPLYQAWSKRPEVTWMHDWSSVQRLLARTWLRDGEAFVQELRGFLPTLQHGSGVPFSIEMLEPDLVPLDYDDPSQHILQGIQRNAWGRATGYYIYTQHPGDPDVLLPEKKLVPSHLIRHIRTIDRIGQVRGISLLASTFTRIEDLKDYEESERIAAKIAACMAAVIIKGDPGQYDPEKYASTGQRMMRFQPAMIFDGLNPGERIDPIDSTRPNPNLESYRDGQLRAIAAPMRISFSSLAKNYNGTYSAQRQELVEQYGAYGVLAHEFISQMVRPLYERLIAIAVTSGALTLPPNVPLANALGADYLPPSMPWIDPLKEINALTAQVQAGVRSLSSVIAERGGRMYDTLEQLSLDKEWAAERGLTLSVFPNATASPPPATTDGDEGDVPQDQAATA
>NZ_CP006740.1|WP_038228002.1|1620920_1621157_-|hypothetical-protein
MSLATDQVALLKDAYRKVLLGQSVRYGERQVTRADAKWISDELDKWLRRAAAEAAPSTSGTVRIAIADFRRDSGGDAP
>NZ_CP006740.1|WP_040123222.1|1621233_1623333_-|phage-terminase-large-subunit-family-protein
MSLDDFPDIQLANAYHTVSTAWQHAWEVPPRLEISQWADAYRKIARGSGAEPGQWRTDRHPPLREIMNCLSDHTPVQQVSFMKSGQIGATEIGINWVCYVIDRGIDSMIVTQPVKDLARTWTVAKFDPGVLDMPPLLNKLTTNNTFEKQYPGGTLFVKWANSSSQLRQITACYAFLDEIDEYPRNLNNQGTADQQIAARIMSHGERGKIYRACTPTVAGGSAIETNFLDGDQRHYHIHCPHCGGEQVLDLEHLQPDGTFACAVNGCIIQEHHKNTILKERGTGGTAFWHPHNPSAPPDHRSYHLWAAYAPLGLGLSWKQIADKWAEAKRDPSKLPGFTNLILGLPFQGERDVRAAHEVATLAEPGVYRGLVPLGGLVLAAGVDLAHDRAEIHLIATGRGQRRYIVDYAVIDLDPTVLDSYTDLDTYLRGTWKTACGIDMPISAVAIDGGNWTETVAQFIKQHVGWSGQSRILETPHGFLKQTLYLVRGRAEIKSDRAVYRPSKTTVDERGKTLARDVGVWGVGTSVLKHMIYGWLGAALAAKDNAAQTGTAEDISARMLRFPGGRGDDNHDPLHPDPGALPEHYFAGLTAEYFDKDAGRWIKPRGVRNEPLDTAVYALWATLAPALKVDVMRESQWEALEAIYQPTNGSLFDPPAAPPTDTARGTLRSVTATPAPPSAPHDMPPLPNSGFGSDRWNKRL
>NZ_CP006740.1|WP_038228344.1|1623329_1623938_-|hypothetical-protein
MGSVTTMTTAEYAKHRGVSDSYIRRMRRKGNVILGEDGRIHVNASDTLLDGMTHPVQGGKRGMTDSPVSGVPTFTVMTPQGIPVQEAVRRERVARALMAELDLGKQAEQLTCVDEVNRAVFTLVRQALNQLRGMSGRLRKTLAAETDAGKVTQIIDTDVAHICKQMQDAATTLLKTNTPDAEPVQANDTNDTLEFEEEGVSG
>NZ_CP006740.1|WP_040123223.1|1624334_1625801_-|virulence-factor
MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPAPWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDSVLKAVIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASDRTYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCWGVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIVAERDQLWAEAVQLFLDRFPYWVLPDDAPAEQAARYIGDSWEARVEQFLAGQFRKTVDGKEIAPQRLKLTAGRVLWTTTDELLEFAIGMDPARHDRSAQMRVANIMKRLGRDPVQGDACVEDTWDHLRKRWPDTKTREQRWVREGTCINELTPVSKPLDDNGRDDAPDF
>NZ_CP006740.1|WP_040123224.1|1625797_1626853_-|DNA-primase
MTRVDTQALRARIDLVEVVGRYVTLRRTGAEYTGVCPFHHEHTPSFTVIPHKGFVHCFGCGAHHDAIGFVMRYLNVDFREAVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAAPLKVQRLDAYRDAQGRLLGYVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYAVVAWPGGTNGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVGVRSIGMIDTHGCSKGWDLADAFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
>NZ_CP006740.1|WP_038227995.1|1626851_1627253_+|hypothetical-protein
MLLPRLTPLRLLTVDLHSPLHPKVRGDVFPASWLGRTAGARAHLRQRLDVRLPLRPGLIPQRLDSLTQTPRHTHGPPRNSNTPCLHRDASASTRIRSRAANAAAPLTPCSLEYKASSAARNPAHCRGVIVTLP
>NZ_CP006740.1|WP_040123370.1|1627354_1627978_-|hypothetical-protein
MFGMTDRVHLLLEARMKREPRFLPPLQSVIYGYTRRMLDQTAMNAQSFAMVLAETYLSLTAPDVRGVALRIGDDVAEDMRNNAQVLRRYMDGTVKTLPADLVDAWVLALPEPYRGECERDLARRRGVLPVRLPSADSAAGVVGVAELVSEFAQLLEVIAPALADSRIDKNDLPFVRRILDESDDVIAAVLGVRGQVQAMFQQENTDA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

221797 : 269756

Escherichia_phage(23.81%)

plate,integrase,capsid,protease,tail,portal

attL 214107:214121|attR 270132:270146

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
214107:214121	attL	NA	NA	NA	NA
WP_004089328.1\|221797_223132_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_004089326.1\|223158_224343_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_027700423.1\|224345_225200_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_038228785.1\|225196_225964_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	7.3e-17	34.8
WP_004089320.1\|225966_226524_-	ribosome recycling factor	NA	NA	NA	NA
WP_038228786.1\|227319_228663_-	outer membrane protein transport protein	NA	NA	NA	NA
WP_004089316.1\|228894_229575_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004089314.1\|229693_230014_+	DUF1820 family protein	NA	NA	NA	NA
WP_038230128.1\|231233_231965_-	UMP kinase	NA	NA	NA	NA
WP_155266588.1\|232270_232414_+	hypothetical protein	NA	NA	NA	NA
WP_038230130.1\|232410_232659_+	hypothetical protein	NA	NA	NA	NA
WP_038230133.1\|233360_234020_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_038230135.1\|234116_236033_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_038230136.1\|236173_236893_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_038230138.1\|236889_237903_-	glucokinase	NA	NA	NA	NA
WP_038230140.1\|237899_239333_-	glucose-6-phosphate dehydrogenase	A0A222YYZ2	Synechococcus_phage	2.6e-68	34.4
WP_040123336.1\|239661_240756_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	7.2e-26	32.4
WP_004089294.1\|240900_241704_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_011097601.1\|242018_242237_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_038230145.1\|242294_242690_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_040123070.1\|242686_243070_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_040123071.1\|243077_244868_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_004089282.1\|244888_245674_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_004089280.1\|245794_246043_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_051606190.1\|246065_246446_+	hypothetical protein	NA	NA	NA	NA
WP_038230151.1\|246471_247713_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_140161045.1\|247744_248428_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	7.6e-34	37.0
WP_038230158.1\|248775_251253_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.4e-05	34.3
WP_004085189.1\|251237_251900_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_004089267.1\|251904_252342_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_004089264.1\|252359_254108_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	3.9e-50	29.4
WP_038230156.1\|254104_255124_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_080679715.1\|255530_256253_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	6.1e-50	40.7
WP_040123072.1\|256137_257109_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	7.7e-64	46.8
WP_040123338.1\|257116_257674_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	2.3e-52	55.0
WP_040123073.1\|257666_258560_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	6.6e-70	46.4
WP_004088650.1\|258559_258898_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.4e-33	61.3
WP_004086967.1\|259046_259310_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_038230161.1\|259296_259578_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_027700438.1\|259614_260202_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_040123074.1\|260198_260741_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	3.2e-35	41.6
WP_038230165.1\|260716_261238_-	hypothetical protein	D5LGZ7	Escherichia_phage	7.4e-13	34.9
WP_027700441.1\|261234_261558_-	hypothetical protein	NA	NA	NA	NA
WP_027700442.1\|261557_261818_-	hypothetical protein	NA	NA	NA	NA
WP_040123075.1\|261835_263710_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	6.9e-162	48.1
WP_040123076.1\|263706_264339_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	5.6e-47	51.7
WP_038230623.1\|264344_264854_+	hypothetical protein	C8CLG0	Xylella_phage	4.0e-88	95.7
WP_004085028.1\|264850_265129_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.9e-44	96.7
WP_040123340.1\|265130_265439_-	hypothetical protein	NA	NA	NA	NA
WP_040123077.1\|265523_266942_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.0e-274	98.3
WP_016024069.1\|267094_267352_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	9.8e-43	100.0
WP_038230604.1\|267341_268361_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	4.6e-168	88.2
WP_038228792.1\|269114_269756_+	ParA family protein	A0A142F1W4	Mycobacterium_phage	1.2e-12	39.7
270132:270146	attR	NA	NA	NA	NA

DBSCAN-SWA_2

550644 : 661511

114

Xylella_phage(25.49%)

plate,terminase,integrase,capsid,protease,tail,portal,tRNA

attL 564394:564409|attR 584350:584365

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024749251.1\|550644_551415_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_004090663.1\|551411_552074_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_038229079.1\|552575_553793_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_038229054.1\|553918_554725_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_027700018.1\|554933_556325_-	DNA repair protein RadA	NA	NA	NA	NA
WP_038229056.1\|556507_557473_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004083818.1\|557673_558153_-	hypothetical protein	NA	NA	NA	NA
WP_038229058.1\|558275_560078_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.9e-80	35.1
WP_004090677.1\|560257_560800_-	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	5.5e-19	36.1
WP_038229060.1\|560893_565294_+	DUF3418 domain-containing protein	A0A1V0SBU4	Catovirus	1.1e-45	26.6
564394:564409	attL	NA	NA	NA	NA
WP_040123094.1\|565306_566782_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_038229064.1\|567199_570142_+	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	3.2e-262	51.6
WP_004090681.1\|570705_571767_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.0e-101	56.9
WP_004090683.1\|571778_572015_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	6.5e-09	54.4
WP_040123095.1\|572011_573406_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	4.4e-262	96.1
WP_040123096.1\|573490_573907_+	hypothetical protein	NA	NA	NA	NA
WP_038230497.1\|573908_574187_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_040123097.1\|574183_576364_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	94.2
WP_155266612.1\|576365_577523_-	hypothetical protein	C8CLG1	Xylella_phage	7.0e-205	93.4
WP_040123098.1\|577648_578215_-	DUF2815 family protein	C8CLG2	Xylella_phage	1.7e-100	95.2
WP_040123099.1\|578211_579492_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	3.0e-241	98.1
WP_040123100.1\|579488_579986_-	hypothetical protein	C8CLG4	Xylella_phage	1.9e-50	93.4
WP_004086187.1\|579975_580170_-	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_040123101.1\|580201_580396_-	hypothetical protein	C8CLG6	Xylella_phage	1.6e-21	81.2
WP_040123102.1\|580392_580794_-	hypothetical protein	C8CLG7	Xylella_phage	8.1e-44	66.9
WP_040123103.1\|580793_581255_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_040123104.1\|581251_581767_-	hypothetical protein	NA	NA	NA	NA
WP_040123105.1\|581763_582297_-	hypothetical protein	NA	NA	NA	NA
WP_040123106.1\|583104_583875_-	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	9.5e-33	40.7
WP_014607787.1\|583948_584149_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_040123107.1\|584145_584451_-	hypothetical protein	NA	NA	NA	NA
584350:584365	attR	NA	NA	NA	NA
WP_080703211.1\|584682_584931_-	hypothetical protein	NA	NA	NA	NA
WP_004085135.1\|585070_585259_+	hypothetical protein	NA	NA	NA	NA
WP_040123109.1\|585255_585504_+	hypothetical protein	NA	NA	NA	NA
WP_040123111.1\|585784_586378_+	hypothetical protein	C8CLH5	Xylella_phage	1.8e-47	55.9
WP_040123112.1\|586513_589060_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	97.4
WP_038230188.1\|589505_590123_+	hypothetical protein	V5YTF6	Pseudomonas_phage	2.4e-26	48.8
WP_040123113.1\|590089_590584_+	lysozyme	I2GUG4	Acinetobacter_phage	1.2e-25	51.4
WP_011097940.1\|590594_590906_+	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_040123114.1\|590895_591357_+	hypothetical protein	NA	NA	NA	NA
WP_038230183.1\|591358_591583_+	hypothetical protein	NA	NA	NA	NA
WP_050765486.1\|591755_592289_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	5.2e-46	58.6
WP_038230181.1\|592281_594234_+\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	3.5e-249	66.5
WP_038230179.1\|594237_594789_+	hypothetical protein	V5YTG8	Pseudomonas_phage	2.6e-40	51.7
WP_040123115.1\|594785_596372_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.1e-131	51.3
WP_040123116.1\|596368_598243_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	6.3e-163	48.3
WP_027700442.1\|598260_598521_+	hypothetical protein	NA	NA	NA	NA
WP_027700441.1\|598520_598844_+	hypothetical protein	NA	NA	NA	NA
WP_038230165.1\|598840_599362_+	hypothetical protein	D5LGZ7	Escherichia_phage	7.4e-13	34.9
WP_038230164.1\|599337_599880_+	hypothetical protein	A0A1W6JT55	Escherichia_phage	9.0e-38	42.6
WP_040123117.1\|599876_600464_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_004090697.1\|600532_600934_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_038230541.1\|600936_601239_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_004085172.1\|601326_601602_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_004085174.1\|601612_601894_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.6e-14	45.2
WP_038210500.1\|602091_602430_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.1e-32	60.4
WP_040123118.1\|602429_603323_+\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.1e-69	46.4
WP_040123345.1\|603315_603873_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	5.1e-52	54.4
WP_040123119.1\|603880_605473_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	9.3e-83	36.1
WP_040123120.1\|605537_606716_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	3.5e-135	55.2
WP_027700433.1\|606715_607225_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	4.0e-48	53.3
WP_012337638.1\|607227_607515_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.4e-13	44.6
WP_040123121.1\|607641_609861_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	4.6e-104	47.1
WP_040123122.1\|609857_610340_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.9e-29	47.6
WP_040123123.1\|610336_610555_+\|tail	tail protein	A0A1W6JT40	Escherichia_phage	2.0e-12	48.6
WP_040123124.1\|610545_611628_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	1.7e-91	45.9
WP_004089237.1\|611923_612265_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_004089235.1\|612264_612873_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_027700013.1\|612878_614876_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_027700012.1\|614869_615829_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_038229804.1\|616297_617299_-	octaprenyl-diphosphate synthase	NA	NA	NA	NA
WP_004089231.1\|617549_618044_+	single-stranded DNA-binding protein	A0A0U1VYM4	Pseudomonas_phage	1.0e-32	62.6
WP_080679699.1\|619691_620522_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_080679700.1\|620822_622031_+	cation:proton antiporter	NA	NA	NA	NA
WP_051606201.1\|622191_622719_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_038229807.1\|623253_623733_-	magnesium transporter	NA	NA	NA	NA
WP_038229809.1\|623828_624113_-	magnesium transporter	NA	NA	NA	NA
WP_080679701.1\|624295_626068_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_004089222.1\|626083_626353_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_004083781.1\|626345_626738_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_152534381.1\|627109_627958_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.8e-08	33.0
WP_004083779.1\|627978_628929_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_004083778.1\|629194_629512_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_080703192.1\|629545_630937_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_004083776.1\|630978_631701_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-26	32.2
WP_004083775.1\|631700_632231_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_004083774.1\|632208_632778_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_004083773.1\|632774_633323_-	HAD family hydrolase	NA	NA	NA	NA
WP_011097728.1\|633340_634342_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.8e-37	35.3
WP_004089208.1\|634403_634631_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_038229815.1\|634701_635979_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_011097729.1\|635975_636278_+	EF-hand domain-containing protein	NA	NA	NA	NA
WP_038229818.1\|636287_636863_-	hypothetical protein	NA	NA	NA	NA
WP_038229820.1\|637118_638003_+	acetyltransferase	NA	NA	NA	NA
WP_027700000.1\|638004_638370_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	2.6e-09	56.1
WP_152534380.1\|638710_642715_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.8e-119	56.2
WP_038229822.1\|642874_643663_-	DsbC family protein	NA	NA	NA	NA
WP_038229824.1\|643794_644769_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	8.6e-31	29.7
WP_038210991.1\|645026_645920_-	ion transporter	NA	NA	NA	NA
WP_038229826.1\|645987_647223_+	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	6.6e-20	24.1
WP_038229828.1\|647630_648995_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_027699998.1\|649214_649826_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_027699997.1\|650456_650690_+	hypothetical protein	NA	NA	NA	NA
WP_040123125.1\|650785_651757_-	hypothetical protein	NA	NA	NA	NA
WP_040123126.1\|652566_653214_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_004089159.1\|653305_654088_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_004089155.1\|654133_654874_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_038229834.1\|654981_655596_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_038229836.1\|655592_656732_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004083752.1\|656728_657187_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004083751.1\|657366_657687_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.2e-11	42.0
WP_038229838.1\|657819_660096_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.9e-170	45.0
WP_004083749.1\|660444_660663_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_004089137.1\|660779_661511_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_3

984156 : 998859

Xanthomonas_phage(50.0%)

integrase

attL 997810:997825|attR 1005179:1005194

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040123149.1\|984156_985332_+	replication initiation factor	S0F3F7	Stenotrophomonas_phage	2.5e-77	45.3
WP_040123150.1\|985372_985684_+	hypothetical protein	NA	NA	NA	NA
WP_038230226.1\|985698_985899_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	8.7e-15	60.0
WP_040123151.1\|985895_986141_+	hypothetical protein	A0A1D6ZIT7	Xanthomonas_phage	1.2e-05	56.6
WP_051606207.1\|986239_987721_+	hypothetical protein	A0A1W6DXV5	Xanthomonas_phage	7.9e-44	47.6
WP_080679719.1\|987726_988098_+	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	8.9e-21	45.9
WP_040123152.1\|988102_989257_+	filamentous phage Cf1c related protein	S0F3F8	Stenotrophomonas_phage	6.2e-113	57.6
WP_038230212.1\|989486_989798_-	hypothetical protein	NA	NA	NA	NA
WP_038230214.1\|989857_990208_-	hypothetical protein	Q38057	Xanthomonas_phage	4.1e-07	51.0
WP_040123153.1\|990251_990650_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_040123154.1\|990797_991082_+	hypothetical protein	NA	NA	NA	NA
WP_080679727.1\|991074_991341_+	hypothetical protein	NA	NA	NA	NA
WP_020852991.1\|991344_991527_+	hypothetical protein	NA	NA	NA	NA
WP_040123155.1\|991643_992819_+	replication initiation factor	S0F3F7	Stenotrophomonas_phage	1.5e-77	46.2
WP_040123156.1\|992859_993171_+	hypothetical protein	NA	NA	NA	NA
WP_038230226.1\|993185_993386_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	8.7e-15	60.0
WP_040123151.1\|993382_993628_+	hypothetical protein	A0A1D6ZIT7	Xanthomonas_phage	1.2e-05	56.6
WP_051606208.1\|993726_995208_+	hypothetical protein	A0A1W6DXV5	Xanthomonas_phage	4.6e-44	47.6
WP_080679719.1\|995213_995585_+	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	8.9e-21	45.9
WP_038230210.1\|995589_996744_+	filamentous phage Cf1c related protein	S0F3F8	Stenotrophomonas_phage	2.5e-114	58.1
WP_040123157.1\|997092_997509_+	hypothetical protein	NA	NA	NA	NA
WP_038210426.1\|997534_997762_-	hypothetical protein	NA	NA	NA	NA
997810:997825	attL	NA	NA	NA	NA
WP_080703198.1\|998028_998859_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	3.6e-62	46.2
WP_080703198.1\|998028_998859_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	3.6e-62	46.2
1005179:1005194	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1003607 : 1014530

Xanthomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040123160.1\|1003607_1004687_+	DUF2075 domain-containing protein	Q6UAZ2	Ralstonia_phage	8.6e-24	29.0
WP_004087004.1\|1004865_1005135_-	hypothetical protein	NA	NA	NA	NA
WP_051606241.1\|1005194_1005539_-	hypothetical protein	Q38057	Xanthomonas_phage	3.1e-07	51.0
WP_040123161.1\|1005733_1006084_+	hypothetical protein	Q38057	Xanthomonas_phage	4.1e-07	51.0
WP_012382578.1\|1006156_1006396_+	hypothetical protein	NA	NA	NA	NA
WP_038230210.1\|1006628_1007783_-	filamentous phage Cf1c related protein	S0F3F8	Stenotrophomonas_phage	2.5e-114	58.1
WP_080679719.1\|1007787_1008159_-	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	8.9e-21	45.9
WP_051606209.1\|1008164_1009646_-	hypothetical protein	A0A1W6DXV5	Xanthomonas_phage	4.6e-44	47.6
WP_040123151.1\|1009744_1009990_-	hypothetical protein	A0A1D6ZIT7	Xanthomonas_phage	1.2e-05	56.6
WP_038230226.1\|1009986_1010187_-	hypothetical protein	S0F2M5	Stenotrophomonas_phage	8.7e-15	60.0
WP_040123156.1\|1010201_1010513_-	hypothetical protein	NA	NA	NA	NA
WP_040123155.1\|1010553_1011729_-	replication initiation factor	S0F3F7	Stenotrophomonas_phage	1.5e-77	46.2
WP_020852991.1\|1012471_1012654_-	hypothetical protein	NA	NA	NA	NA
WP_080703199.1\|1012657_1012924_-	hypothetical protein	NA	NA	NA	NA
WP_004085576.1\|1013837_1014530_-	7-cyano-7-deazaguanine synthase QueC	A0A2I2L6M4	Escherichia_phage	6.5e-25	38.5

DBSCAN-SWA_5

1037809 : 1073931

Xylella_phage(94.44%)

integrase,portal,head

attL 1064352:1064367|attR 1075778:1075793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038230190.1\|1037809_1038142_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	2.4e-17	39.8
WP_040123165.1\|1038330_1039833_-	hypothetical protein	C8CLJ8	Xylella_phage	6.2e-246	94.0
WP_038230599.1\|1039829_1040612_-	hypothetical protein	C8CLJ7	Xylella_phage	1.0e-127	89.6
WP_020850879.1\|1040698_1040944_+	hypothetical protein	C8CLJ6	Xylella_phage	2.7e-34	90.1
WP_080703200.1\|1040909_1041344_+	DUF2335 domain-containing protein	C8CLJ5	Xylella_phage	3.2e-30	64.9
WP_128283847.1\|1041452_1041656_+	hypothetical protein	NA	NA	NA	NA
WP_020850878.1\|1041652_1043422_-	hypothetical protein	C8CLJ3	Xylella_phage	3.6e-277	89.7
WP_040123166.1\|1043425_1044634_-	hypothetical protein	C8CLJ2	Xylella_phage	2.2e-217	98.8
WP_038230533.1\|1044637_1045345_-	hypothetical protein	C8CLJ1	Xylella_phage	6.8e-94	79.6
WP_040123167.1\|1045375_1045621_-	hypothetical protein	C8CLJ0	Xylella_phage	8.4e-36	100.0
WP_016024102.1\|1045590_1047519_-\|head	head completion protein	C8CLI9	Xylella_phage	0.0e+00	100.0
WP_016024101.1\|1047515_1047923_-	DNA stabilization protein	C8CLI8	Xylella_phage	1.9e-69	100.0
WP_040123168.1\|1047943_1049170_-	hypothetical protein	C8CLI7	Xylella_phage	1.9e-229	99.8
WP_016024099.1\|1049217_1050072_-	hypothetical protein	C8CLI6	Xylella_phage	2.7e-129	100.0
WP_016024098.1\|1050073_1052146_-\|portal	portal protein	C8CLI5	Xylella_phage	0.0e+00	100.0
WP_080679723.1\|1052148_1053564_-	DNA packaging protein	C8CLI4	Xylella_phage	3.5e-283	100.0
WP_040123169.1\|1053472_1053799_-	hypothetical protein	C8CLI3	Xylella_phage	2.0e-53	99.1
WP_016024095.1\|1053798_1054113_-	hypothetical protein	C8CLI2	Xylella_phage	7.5e-53	100.0
WP_038230362.1\|1054109_1054655_-	hypothetical protein	C8CLI0	Xylella_phage	7.8e-82	99.4
WP_051606210.1\|1054651_1055143_-	lysozyme	C8CLH9	Xylella_phage	3.4e-92	98.8
WP_040123171.1\|1055479_1056187_-	hypothetical protein	C8CLH7	Xylella_phage	2.6e-125	97.4
WP_040123172.1\|1056461_1058990_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	77.2
WP_040123173.1\|1059125_1059716_-	phage antirepressor protein	C8CLH5	Xylella_phage	6.3e-53	92.7
WP_020852637.1\|1059974_1060358_-	hypothetical protein	C8CLH2	Xylella_phage	1.9e-66	99.2
WP_040123174.1\|1060445_1060775_-	hypothetical protein	NA	NA	NA	NA
WP_040123359.1\|1060764_1060989_-	hypothetical protein	NA	NA	NA	NA
WP_040123175.1\|1061054_1061720_+	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	2.5e-21	33.0
WP_040123176.1\|1061902_1062436_+	hypothetical protein	NA	NA	NA	NA
WP_040123177.1\|1062432_1062948_+	hypothetical protein	NA	NA	NA	NA
WP_051606211.1\|1062944_1063358_+	hypothetical protein	C8CLG9	Xylella_phage	1.1e-35	63.9
WP_004088545.1\|1063354_1063816_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_004088547.1\|1063815_1064217_+	hypothetical protein	C8CLG7	Xylella_phage	3.6e-44	66.2
WP_020852641.1\|1064213_1064408_+	hypothetical protein	C8CLG6	Xylella_phage	7.2e-22	82.8
1064352:1064367	attL	NA	NA	NA	NA
WP_016024078.1\|1064439_1064634_+	hypothetical protein	C8CLG5	Xylella_phage	3.3e-27	100.0
WP_040123178.1\|1064633_1065122_+	hypothetical protein	C8CLG4	Xylella_phage	4.7e-62	96.9
WP_040123179.1\|1065118_1066399_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	1.4e-246	99.5
WP_016024075.1\|1066395_1066962_+	DUF2815 family protein	C8CLG2	Xylella_phage	5.2e-105	100.0
WP_155266613.1\|1067087_1068245_+	hypothetical protein	C8CLG1	Xylella_phage	1.1e-207	95.3
WP_040123180.1\|1068246_1070427_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	96.4
WP_038230497.1\|1070423_1070702_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_040123181.1\|1070703_1071009_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_016024069.1\|1072664_1072922_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	9.8e-43	100.0
WP_040123182.1\|1072911_1073931_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	7.1e-169	88.8
1075778:1075793	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1116226 : 1125585

Aggregatibacter_phage(25.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038229562.1\|1116226_1117102_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-08	24.8
WP_038229560.1\|1117098_1118076_+	ABC transporter permease	NA	NA	NA	NA
WP_020852919.1\|1118334_1118781_+	hypothetical protein	NA	NA	NA	NA
WP_040123183.1\|1118960_1120133_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	8.5e-09	32.7
WP_038230308.1\|1120136_1120697_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_040123184.1\|1120693_1121839_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.8e-97	49.2
WP_004089386.1\|1121988_1122297_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011097871.1\|1122305_1122545_-	antitoxin	NA	NA	NA	NA
WP_040123185.1\|1122682_1123036_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	1.3e-24	50.4
WP_040123186.1\|1123032_1123674_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.2e-30	36.8
WP_040123187.1\|1123670_1124501_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	7.5e-76	51.1
WP_012382585.1\|1124497_1124815_-	hypothetical protein	NA	NA	NA	NA
WP_040123188.1\|1124814_1125585_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.2e-30	36.7

DBSCAN-SWA_7

1128809 : 1139978

Xylella_phage(62.5%)

integrase

attL 1127201:1127214|attR 1149935:1149948

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1127201:1127214	attL	NA	NA	NA	NA
WP_004087249.1\|1128809_1129247_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	3.6e-45	63.1
WP_051606212.1\|1131305_1131923_+	hypothetical protein	C8CLG0	Xylella_phage	1.8e-114	96.1
WP_004085028.1\|1131919_1132198_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.9e-44	96.7
WP_011097621.1\|1132199_1132508_-	hypothetical protein	NA	NA	NA	NA
WP_040123189.1\|1132592_1134011_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	4.6e-275	98.5
WP_016024069.1\|1134164_1134422_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	9.8e-43	100.0
WP_040123190.1\|1134411_1135431_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-168	88.5
WP_038230066.1\|1135497_1137435_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-68	31.3
WP_038230106.1\|1137596_1139978_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.4e-10	28.7
1149935:1149948	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1307082 : 1313440

Xylella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004089519.1\|1307082_1307382_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.1e-13	45.9
WP_004085025.1\|1307561_1307897_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_038228269.1\|1307893_1308148_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_040123196.1\|1308200_1308899_-	hypothetical protein	C8CLH7	Xylella_phage	9.0e-99	80.4
WP_038228391.1\|1309027_1309438_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.4e-11	43.0
WP_040123197.1\|1309485_1310175_-	hypothetical protein	NA	NA	NA	NA
WP_040123198.1\|1310155_1311058_-	YdaU family protein	A0A142K7R2	Mycobacterium_phage	1.0e-17	59.0
WP_080679645.1\|1311054_1311354_-	hypothetical protein	C8CLG1	Xylella_phage	4.3e-42	81.8
WP_040123200.1\|1311455_1311830_+	hypothetical protein	NA	NA	NA	NA
WP_040123201.1\|1311835_1312441_+	conjugal transfer protein TrbN	NA	NA	NA	NA
WP_038228248.1\|1312993_1313440_+	hypothetical protein	B3GAJ9	uncultured_virus	3.7e-21	43.7

DBSCAN-SWA_9

1577241 : 1623333

Stenotrophomonas_phage(16.67%)

integrase,tRNA,portal,terminase

attL 1582928:1582987|attR 1620477:1630045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021358189.1\|1577241_1579314_+\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_051606219.1\|1579612_1580032_+	Rnf electron transport complex subunit RnfB	NA	NA	NA	NA
WP_038228014.1\|1580149_1580350_-	hypothetical protein	NA	NA	NA	NA
WP_038228009.1\|1580838_1581507_-	hypothetical protein	NA	NA	NA	NA
WP_038228007.1\|1581608_1581866_-	hypothetical protein	NA	NA	NA	NA
WP_080679634.1\|1582452_1582887_-	hypothetical protein	NA	NA	NA	NA
WP_040123221.1\|1582859_1583375_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.5e-13	34.7
1582928:1582987	attL	NA	NA	NA	NA
WP_038228002.1\|1583371_1583608_-	hypothetical protein	NA	NA	NA	NA
WP_040123222.1\|1583684_1585784_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	8.0e-74	30.2
WP_038228344.1\|1585780_1586389_-	hypothetical protein	NA	NA	NA	NA
WP_040123223.1\|1586785_1588252_-	virulence factor	A0A2D1GN57	Marinobacter_phage	2.3e-59	33.1
WP_040123224.1\|1588248_1589304_-	DNA primase	G9CU58	Helicobacter_phage	1.4e-13	44.3
WP_038227995.1\|1589302_1589704_+	hypothetical protein	NA	NA	NA	NA
WP_040123370.1\|1589805_1590429_-	hypothetical protein	NA	NA	NA	NA
WP_038227991.1\|1590484_1590709_+	hypothetical protein	NA	NA	NA	NA
WP_038227987.1\|1591075_1591309_+	hypothetical protein	NA	NA	NA	NA
WP_080679633.1\|1591301_1591772_+	DUF5131 family protein	NA	NA	NA	NA
WP_051606220.1\|1591755_1592253_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.0e-32	52.3
WP_040123372.1\|1592224_1592497_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.3e-08	51.7
WP_040123225.1\|1592496_1593669_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	3.8e-118	53.5
WP_038227961.1\|1593978_1594182_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_080679632.1\|1594484_1595279_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011098180.1\|1596586_1597249_-	hypothetical protein	NA	NA	NA	NA
WP_140189681.1\|1597330_1597558_+	hypothetical protein	NA	NA	NA	NA
WP_057683625.1\|1597938_1598193_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.8e-17	54.8
WP_012337734.1\|1598173_1598518_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.1e-17	49.1
WP_004083921.1\|1598795_1599083_+	hypothetical protein	NA	NA	NA	NA
WP_004084245.1\|1599042_1599360_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_040123226.1\|1599765_1600008_+	hypothetical protein	NA	NA	NA	NA
WP_040123227.1\|1600020_1600272_+	hypothetical protein	NA	NA	NA	NA
WP_040123373.1\|1600366_1600663_+	hypothetical protein	NA	NA	NA	NA
WP_027700038.1\|1600716_1601115_+	hypothetical protein	NA	NA	NA	NA
WP_040123228.1\|1601370_1602162_-	DNA adenine methylase	B7SYF3	Stenotrophomonas_phage	1.2e-104	69.6
WP_155266601.1\|1602228_1602435_+	hypothetical protein	NA	NA	NA	NA
WP_040123229.1\|1602397_1603093_-	hypothetical protein	NA	NA	NA	NA
WP_004083636.1\|1603168_1603588_-	hypothetical protein	NA	NA	NA	NA
WP_040123230.1\|1604095_1606921_-	VWA domain-containing protein	A0A0A1IVS6	Pseudomonas_phage	4.4e-59	29.5
WP_004083943.1\|1606910_1607147_-	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	6.3e-12	53.0
WP_004083945.1\|1607143_1607572_-	hypothetical protein	NA	NA	NA	NA
WP_040123231.1\|1607562_1609005_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_040123232.1\|1608994_1610182_-	hypothetical protein	J9STL4	Pseudomonas_phage	1.0e-41	32.4
WP_040123233.1\|1610174_1612688_-	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	5.0e-22	30.4
WP_040123234.1\|1612852_1613299_-	hypothetical protein	NA	NA	NA	NA
WP_040123235.1\|1613295_1614045_-	hypothetical protein	A0A2I7QRV3	Vibrio_phage	6.6e-23	30.0
WP_040123236.1\|1614041_1614515_-	hypothetical protein	NA	NA	NA	NA
WP_004086810.1\|1614511_1614832_-	hypothetical protein	NA	NA	NA	NA
WP_040123237.1\|1614828_1615614_-	hypothetical protein	NA	NA	NA	NA
WP_155266602.1\|1615610_1615754_-	hypothetical protein	NA	NA	NA	NA
WP_040123238.1\|1615753_1616335_-	lysozyme	C8CLH9	Xylella_phage	1.9e-62	82.7
WP_040123239.1\|1616327_1616552_-	hypothetical protein	NA	NA	NA	NA
WP_040123240.1\|1616624_1616984_-	DUF2190 family protein	NA	NA	NA	NA
WP_040123241.1\|1619361_1620924_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.3e-89	39.0
WP_038228002.1\|1620920_1621157_-	hypothetical protein	NA	NA	NA	NA
WP_040123222.1\|1621233_1623333_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	8.0e-74	30.2
1620477:1630045	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1774387 : 1797467

Haemophilus_phage(28.57%)

plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038227869.1\|1774387_1777171_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.1e-45	24.1
WP_004089938.1\|1777387_1777861_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_040123248.1\|1779518_1780682_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	8.5e-09	32.7
WP_038230308.1\|1780685_1781246_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_011097984.1\|1781242_1782388_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	2.1e-97	49.2
WP_004089252.1\|1782486_1782783_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.3e-26	58.1
WP_038211623.1\|1782786_1783092_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	2.4e-11	43.6
WP_040123249.1\|1783102_1783456_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	1.7e-24	50.4
WP_040123250.1\|1783452_1784094_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.5e-31	37.3
WP_038230303.1\|1784090_1784921_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	3.4e-76	51.1
WP_012382585.1\|1784917_1785235_-	hypothetical protein	NA	NA	NA	NA
WP_024749166.1\|1786092_1786392_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.9e-19	49.5
WP_004085003.1\|1786395_1786704_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.4e-16	46.7
WP_038230294.1\|1786777_1788667_-	hypothetical protein	D0UII2	Aggregatibacter_phage	1.8e-24	28.0
WP_004085005.1\|1788814_1789237_-	hypothetical protein	NA	NA	NA	NA
WP_040123251.1\|1789233_1789671_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	4.0e-44	61.7
WP_038230289.1\|1789680_1791177_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	1.2e-124	48.0
WP_038211636.1\|1791177_1791648_-	hypothetical protein	NA	NA	NA	NA
WP_021358622.1\|1791634_1792003_-	hypothetical protein	Q776V7	Haemophilus_phage	6.3e-19	40.7
WP_027700647.1\|1791989_1792469_-	hypothetical protein	M4SN98	Psychrobacter_phage	8.6e-08	28.7
WP_004085010.1\|1792465_1792837_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_038230286.1\|1792839_1793175_-	hypothetical protein	NA	NA	NA	NA
WP_038230284.1\|1793239_1794223_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.9e-49	38.7
WP_038230283.1\|1794232_1794715_-	hypothetical protein	NA	NA	NA	NA
WP_040123252.1\|1794724_1795933_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.5e-40	42.2
WP_040123253.1\|1795932_1796778_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	9.8e-31	34.2
WP_038230273.1\|1796850_1797189_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004090283.1\|1797185_1797467_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2

DBSCAN-SWA_11

1800487 : 1825530

Xylella_phage(60.87%)

integrase,terminase

attL 1807258:1807271|attR 1828905:1828918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038230550.1\|1800487_1802038_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.2e-111	44.3
WP_020853032.1\|1801988_1802387_-	hypothetical protein	NA	NA	NA	NA
WP_040123254.1\|1802477_1802690_-	hypothetical protein	NA	NA	NA	NA
WP_040123255.1\|1802691_1803153_-	hypothetical protein	NA	NA	NA	NA
WP_011097940.1\|1803142_1803454_-	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_038230262.1\|1803464_1803965_-	lysozyme	I2GUG4	Acinetobacter_phage	4.3e-26	51.7
WP_004089578.1\|1804167_1804506_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_004089577.1\|1804492_1804759_-	hypothetical protein	K4NX81	Burkholderia_phage	1.8e-07	40.7
WP_040123256.1\|1804947_1805646_-	hypothetical protein	C8CLH7	Xylella_phage	1.6e-100	81.7
WP_038211646.1\|1805774_1806185_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	8.4e-12	43.1
WP_038230254.1\|1806190_1807651_-	replicative DNA helicase	O80281	Escherichia_phage	1.3e-70	39.3
1807258:1807271	attL	NA	NA	NA	NA
WP_040123257.1\|1807647_1808496_-	hypothetical protein	NA	NA	NA	NA
WP_038230249.1\|1808497_1808776_-	hypothetical protein	NA	NA	NA	NA
WP_040123376.1\|1808754_1809864_-	hypothetical protein	C8CLG1	Xylella_phage	3.1e-109	56.9
WP_038230245.1\|1809929_1810511_-	hypothetical protein	A4PE61	Ralstonia_virus	8.2e-21	46.7
WP_038230243.1\|1810795_1811044_-	hypothetical protein	NA	NA	NA	NA
WP_038230241.1\|1811040_1811229_-	hypothetical protein	NA	NA	NA	NA
WP_155266605.1\|1811289_1811787_-	hypothetical protein	NA	NA	NA	NA
WP_040123259.1\|1812107_1812782_+	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	1.5e-18	31.7
WP_004087046.1\|1813440_1813629_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_038230236.1\|1814008_1814464_+	hypothetical protein	NA	NA	NA	NA
WP_038230234.1\|1814460_1814886_+	hypothetical protein	NA	NA	NA	NA
WP_038230232.1\|1814882_1815353_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_038230230.1\|1815349_1815757_+	hypothetical protein	C8CLG7	Xylella_phage	9.4e-56	85.2
WP_004087232.1\|1815753_1815945_+	hypothetical protein	NA	NA	NA	NA
WP_040123260.1\|1815968_1816160_+	hypothetical protein	C8CLG6	Xylella_phage	2.1e-18	78.1
WP_004086187.1\|1816191_1816386_+	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_016024077.1\|1816385_1816874_+	hypothetical protein	C8CLG4	Xylella_phage	1.5e-63	100.0
WP_040123261.1\|1816870_1818151_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	7.4e-240	97.7
WP_016024075.1\|1818147_1818714_+	DUF2815 family protein	C8CLG2	Xylella_phage	5.2e-105	100.0
WP_040123377.1\|1818839_1820003_+	hypothetical protein	C8CLG1	Xylella_phage	1.4e-173	81.6
WP_040123262.1\|1820004_1822185_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	94.8
WP_038230497.1\|1822181_1822460_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_040123181.1\|1822461_1822767_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_040123263.1\|1822851_1824270_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.5e-273	97.9
WP_080703203.1\|1824266_1824521_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.8e-36	92.5
WP_038229700.1\|1824510_1825530_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.5e-166	86.7
1828905:1828918	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1884370 : 1919202

Xylella_phage(94.74%)

portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038230190.1\|1884370_1884703_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	2.4e-17	39.8
WP_040123165.1\|1884891_1886394_-	hypothetical protein	C8CLJ8	Xylella_phage	6.2e-246	94.0
WP_038230599.1\|1886390_1887173_-	hypothetical protein	C8CLJ7	Xylella_phage	1.0e-127	89.6
WP_020850879.1\|1887259_1887505_+	hypothetical protein	C8CLJ6	Xylella_phage	2.7e-34	90.1
WP_080703200.1\|1887470_1887905_+	DUF2335 domain-containing protein	C8CLJ5	Xylella_phage	3.2e-30	64.9
WP_128283847.1\|1888013_1888217_+	hypothetical protein	NA	NA	NA	NA
WP_020850878.1\|1888213_1889983_-	hypothetical protein	C8CLJ3	Xylella_phage	3.6e-277	89.7
WP_040123166.1\|1889986_1891195_-	hypothetical protein	C8CLJ2	Xylella_phage	2.2e-217	98.8
WP_038230533.1\|1891198_1891906_-	hypothetical protein	C8CLJ1	Xylella_phage	6.8e-94	79.6
WP_040123167.1\|1891936_1892182_-	hypothetical protein	C8CLJ0	Xylella_phage	8.4e-36	100.0
WP_016024102.1\|1892151_1894080_-\|head	head completion protein	C8CLI9	Xylella_phage	0.0e+00	100.0
WP_016024101.1\|1894076_1894484_-	DNA stabilization protein	C8CLI8	Xylella_phage	1.9e-69	100.0
WP_040123168.1\|1894504_1895731_-	hypothetical protein	C8CLI7	Xylella_phage	1.9e-229	99.8
WP_016024099.1\|1895778_1896633_-	hypothetical protein	C8CLI6	Xylella_phage	2.7e-129	100.0
WP_016024098.1\|1896634_1898707_-\|portal	portal protein	C8CLI5	Xylella_phage	0.0e+00	100.0
WP_080679723.1\|1898709_1900125_-	DNA packaging protein	C8CLI4	Xylella_phage	3.5e-283	100.0
WP_016024096.1\|1900033_1900360_-	hypothetical protein	C8CLI3	Xylella_phage	7.0e-54	100.0
WP_016024095.1\|1900359_1900674_-	hypothetical protein	C8CLI2	Xylella_phage	7.5e-53	100.0
WP_038230362.1\|1900670_1901216_-	hypothetical protein	C8CLI0	Xylella_phage	7.8e-82	99.4
WP_051606210.1\|1901212_1901704_-	lysozyme	C8CLH9	Xylella_phage	3.4e-92	98.8
WP_152534392.1\|1901681_1901915_-	hypothetical protein	C8CLH8	Xylella_phage	3.3e-37	98.7
WP_040123171.1\|1902039_1902747_-	hypothetical protein	C8CLH7	Xylella_phage	2.6e-125	97.4
WP_040123172.1\|1903021_1905550_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	77.2
WP_040123271.1\|1905685_1906279_-	hypothetical protein	C8CLH5	Xylella_phage	1.6e-48	56.9
WP_080703204.1\|1906275_1906539_-	hypothetical protein	C8CLH4	Xylella_phage	1.2e-27	69.8
WP_016024085.1\|1906535_1906919_-	hypothetical protein	C8CLH2	Xylella_phage	1.1e-66	100.0
WP_155266607.1\|1907118_1907664_-	hypothetical protein	NA	NA	NA	NA
WP_038230585.1\|1907723_1907960_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038230581.1\|1908042_1908798_+	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	3.0e-07	33.8
WP_038230385.1\|1908979_1909528_+	hypothetical protein	C8CLG9	Xylella_phage	2.0e-08	36.6
WP_051606211.1\|1909524_1909938_+	hypothetical protein	C8CLG9	Xylella_phage	1.1e-35	63.9
WP_004088545.1\|1909934_1910396_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_004088547.1\|1910395_1910797_+	hypothetical protein	C8CLG7	Xylella_phage	3.6e-44	66.2
WP_020852641.1\|1910793_1910988_+	hypothetical protein	C8CLG6	Xylella_phage	7.2e-22	82.8
WP_016024078.1\|1911019_1911214_+	hypothetical protein	C8CLG5	Xylella_phage	3.3e-27	100.0
WP_040123100.1\|1911203_1911701_+	hypothetical protein	C8CLG4	Xylella_phage	1.9e-50	93.4
WP_040123273.1\|1911697_1912978_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	6.7e-241	97.9
WP_040123098.1\|1912974_1913541_+	DUF2815 family protein	C8CLG2	Xylella_phage	1.7e-100	95.2
WP_155266615.1\|1913666_1914824_+	hypothetical protein	C8CLG1	Xylella_phage	3.5e-204	93.1
WP_040123274.1\|1914825_1917006_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	95.0
WP_038230497.1\|1917002_1917281_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_040123096.1\|1917282_1917699_-	hypothetical protein	NA	NA	NA	NA
WP_040123275.1\|1917783_1919202_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.1e-273	98.1

DBSCAN-SWA_13

1923171 : 1943258

Haemophilus_phage(28.57%)

plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038211240.1\|1923171_1924377_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	1.6e-34	28.7
WP_038211241.1\|1924373_1925027_-	hypothetical protein	NA	NA	NA	NA
WP_040123248.1\|1925273_1926437_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	8.5e-09	32.7
WP_038230308.1\|1926440_1927001_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_011097984.1\|1926997_1928143_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	2.1e-97	49.2
WP_004085590.1\|1928245_1928542_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.0e-24	54.7
WP_004085592.1\|1928544_1928838_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_040123277.1\|1928893_1929247_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	1.3e-24	50.4
WP_040123250.1\|1929243_1929885_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.5e-31	37.3
WP_038230303.1\|1929881_1930712_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	3.4e-76	51.1
WP_012382585.1\|1930708_1931026_-	hypothetical protein	NA	NA	NA	NA
WP_024749166.1\|1931883_1932183_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.9e-19	49.5
WP_004085003.1\|1932186_1932495_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.4e-16	46.7
WP_038230294.1\|1932568_1934458_-	hypothetical protein	D0UII2	Aggregatibacter_phage	1.8e-24	28.0
WP_004085005.1\|1934605_1935028_-	hypothetical protein	NA	NA	NA	NA
WP_040123251.1\|1935024_1935462_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	4.0e-44	61.7
WP_038230289.1\|1935471_1936968_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	1.2e-124	48.0
WP_038211636.1\|1936968_1937439_-	hypothetical protein	NA	NA	NA	NA
WP_021358622.1\|1937425_1937794_-	hypothetical protein	Q776V7	Haemophilus_phage	6.3e-19	40.7
WP_027700647.1\|1937780_1938260_-	hypothetical protein	M4SN98	Psychrobacter_phage	8.6e-08	28.7
WP_004085010.1\|1938256_1938628_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_038230286.1\|1938630_1938966_-	hypothetical protein	NA	NA	NA	NA
WP_040123278.1\|1939030_1940014_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.9e-49	38.7
WP_038230283.1\|1940023_1940506_-	hypothetical protein	NA	NA	NA	NA
WP_040123252.1\|1940515_1941724_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.5e-40	42.2
WP_040123253.1\|1941723_1942569_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	9.8e-31	34.2
WP_038230273.1\|1942641_1942980_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004090283.1\|1942976_1943258_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2

DBSCAN-SWA_14

1946277 : 1968472

Xylella_phage(36.84%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038230550.1\|1946277_1947828_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.2e-111	44.3
WP_020853032.1\|1947778_1948177_-	hypothetical protein	NA	NA	NA	NA
WP_040123254.1\|1948267_1948480_-	hypothetical protein	NA	NA	NA	NA
WP_040123255.1\|1948481_1948943_-	hypothetical protein	NA	NA	NA	NA
WP_011097940.1\|1948932_1949244_-	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_038230262.1\|1949254_1949755_-	lysozyme	I2GUG4	Acinetobacter_phage	4.3e-26	51.7
WP_080703205.1\|1950849_1951014_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_051606226.1\|1951115_1951517_+	Arc family DNA-binding protein	A0A0U4B0M9	Pseudomonas_phage	1.1e-05	53.3
WP_040123279.1\|1951545_1952244_-	hypothetical protein	C8CLH7	Xylella_phage	1.0e-102	84.3
WP_038211646.1\|1952372_1952783_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	8.4e-12	43.1
WP_038228265.1\|1952830_1953520_-	hypothetical protein	NA	NA	NA	NA
WP_038229974.1\|1953500_1954388_-	YdaU family protein	A0A0P0I481	Acinetobacter_phage	2.0e-18	44.0
WP_040123381.1\|1954384_1955494_-	hypothetical protein	C8CLG1	Xylella_phage	1.5e-108	55.6
WP_040123280.1\|1955523_1956312_-	hypothetical protein	C8CLH5	Xylella_phage	8.5e-29	57.7
WP_080703220.1\|1956308_1956911_-	hypothetical protein	C8CLH5	Xylella_phage	2.7e-51	86.2
WP_038229950.1\|1957168_1957534_-	hypothetical protein	NA	NA	NA	NA
WP_038211688.1\|1957530_1957779_-	hypothetical protein	NA	NA	NA	NA
WP_020851634.1\|1957775_1957964_-	hypothetical protein	NA	NA	NA	NA
WP_155238084.1\|1958024_1958171_-	hypothetical protein	NA	NA	NA	NA
WP_152550752.1\|1958511_1958829_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051248012.1\|1958813_1959578_+	helix-turn-helix transcriptional regulator	A0A0U1SXS9	Pseudomonas_phage	7.5e-06	28.1
WP_027700612.1\|1959635_1960154_+	hypothetical protein	NA	NA	NA	NA
WP_004086345.1\|1960176_1960467_+	nucleotidyltransferase	NA	NA	NA	NA
WP_020852210.1\|1960463_1960832_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_155238083.1\|1960850_1961024_+	hypothetical protein	NA	NA	NA	NA
WP_027700613.1\|1961077_1961422_+	hypothetical protein	NA	NA	NA	NA
WP_038229963.1\|1961715_1962123_+	hypothetical protein	C8CLG7	Xylella_phage	4.2e-56	84.4
WP_004086365.1\|1962119_1962311_+	hypothetical protein	NA	NA	NA	NA
WP_038229943.1\|1962354_1962879_+	hypothetical protein	NA	NA	NA	NA
WP_038229961.1\|1962997_1963189_+	hypothetical protein	C8CLG6	Xylella_phage	2.9e-15	70.3
WP_038229942.1\|1963209_1963554_+	hypothetical protein	U5P4J6	Shigella_phage	3.6e-16	45.5
WP_040123282.1\|1963593_1964415_+	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	1.2e-54	43.3
WP_038229940.1\|1964430_1965366_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.4e-57	48.9
WP_040123283.1\|1965362_1967015_+	hypothetical protein	U6C712	Ralstonia_phage	1.1e-94	37.0
WP_038229937.1\|1967368_1967959_+	phage antirepressor protein	C8CLH5	Xylella_phage	5.0e-50	67.8
WP_038229935.1\|1968025_1968472_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	4.5e-35	54.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006739

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006739_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006739_1

4555-4662

Orphan

Consensus_repeat	Method
AGGATGCTGCGACGGTAAAAAGGCGAATGCTGCGACGGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006739_1

>merge|NZ_CP006739|1|4555-4662|CRISPRCasFinder
AGGATGCTGCGACGGTAAAAAGGCGAATGCTGCGACGGTAAAATCTAGGATTCTGCGACGGTACATGAGGATGCTGCGACGGTAAAAAGGCGAGTGCTGCGACGGTAA

>NZ_CP006739|1|1|4555-4662|CRISPRCasFinder
AGGATGCTGCGACGGTAAAAAGGCGAATGCTGCGACGGTAA	AATCTAGGATTCTGCGACGGTACATG
AGGATGCTGCGACGGTAAAAAGGCGAGTGCTGCGACGGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006739.1\|WP_013087971.1\|2358_3111_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184370
NZ_CP006739.1\|WP_038211609.1\|3983_4208_-\|antitoxin-MazE-family-protein	unknown	unknown	gnl\|CDD\|371540
NZ_CP006739.1\|WP_014607322.1\|810_1065_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_080703189.1\|8942_9122_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_013087972.1\|1989_2346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_014607318.1\|3111_3555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_013087960.1\|9606_9927_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP006739.1\|WP_013087965.1\|5526_6129_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP006739.1\|WP_013087959.1\|9931_10315_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368285
NZ_CP006739.1\|WP_080679721.1\|9124_9604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_080703188.1\|7758_7977_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006739.1\|WP_038211605.1\|6305_6536_+\|TraY-domain-containing-protein	unknown	unknown	gnl\|CDD\|227054
NZ_CP006739.1\|WP_013087978.1\|1083_1647_-\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	unknown
NZ_CP006739.1\|WP_152534390.1\|7152_7665_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP006739.1\|WP_014607314.1\|6519_6789_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP006739.1\|WP_128723949.1\|4663_5530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|115680

Protein	Function_ID	Function_description	E-value
NZ_CP006739.1\|WP_013087971.1\|2358_3111_+\|hypothetical-protein	gnl\|CDD\|184370	PRK13886, PRK13886, conjugal transfer protein TraL; Provisional.	2.91174e-93
NZ_CP006739.1\|WP_038211609.1\|3983_4208_-\|antitoxin-MazE-family-protein	gnl\|CDD\|371540	pfam11455, DUF3018, Protein of unknown function (DUF3018). This is a bacterial family of uncharacterized proteins.	4.54252e-27
NZ_CP006739.1\|WP_128723949.1\|4663_5530_-\|hypothetical-protein	gnl\|CDD\|115680	pfam07042, TrfA, TrfA protein. This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa.	8.51523e-23
NZ_CP006739.1\|WP_013087959.1\|9931_10315_+\|hypothetical-protein	gnl\|CDD\|368285	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein. This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.	4.26063e-07
NZ_CP006739.1\|WP_152534390.1\|7152_7665_+\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	5.48683e-33
NZ_CP006739.1\|WP_013087960.1\|9606_9927_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	5.95491e-07
NZ_CP006739.1\|WP_014607314.1\|6519_6789_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.7384e-17
NZ_CP006739.1\|WP_013087965.1\|5526_6129_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.98305e-56
NZ_CP006739.1\|WP_038211605.1\|6305_6536_+\|TraY-domain-containing-protein	gnl\|CDD\|227054	COG4710, COG4710, Predicted DNA-binding protein with an HTH domain [General function prediction only].	2.75434e-14

>NZ_CP006739.1|WP_038211609.1|3983_4208_-|antitoxin-MazE-family-protein
MGTMHVNARVQKHPNALRMAGLRPVQIWVPDTRRPDFAEECRHQCLLVAQADSTDTAMHQFMDETLADVDGWTE
>NZ_CP006739.1|WP_014607318.1|3111_3555_+|hypothetical-protein
MNKRQLIAAIVEKSGIKLTEDDPAFLLVDLNLMMLEKQTSEAAKQLEAATEKFNAVTTHNVDDFVSVANEALSKFMQRTNEIKSSLDDLSKNLAQVATVTSTSSTHEVTKISHRSELLWWLVPLAFGIGVLAGIGITFVVFMPTLPR
>NZ_CP006739.1|WP_013087971.1|2358_3111_+|hypothetical-protein
MSAKSVKKHPNNSIHFTLQGKGGVGKSLVSSLLAQYFNSIDGCTVKCVDTDPVNQTLSNYKALNAQHIQLMNGSKINERNFDHLMERLMTEEGIFVVDNGASSFVPLSNYLIENNAISMLKESGRNVFIHSVLTGGQALMDTLAGFKSLAEQADTNNIVIWLNEYFGAIEANGKTFTEMKVYTENAHKVRGIVRIIERNQDTFGKDMEVMASKKLTFSEVLSGTDFTLMAKQRIKTVQRELNEQLDAIGF
>NZ_CP006739.1|WP_013087972.1|1989_2346_+|hypothetical-protein
MWKPPQSLSGYIRQHLRELEERLNFGVRQEVILAELKAKGYKTTLKGFRNLLYRARIRAAQNPEEFQTKVEKKNEKEDAQSLAKKSENKKEEVSKNPLKKKAGFDFKGTNSFDESDLI
>NZ_CP006739.1|WP_013087978.1|1083_1647_-|plasmid-mobilization-relaxosome-protein-MobC
MLRVDGVPPKTKRQLQEAAMQLYGKPNASLLVRSLIAGHLLKSVETVKPLTVADVRDMVRVELRLPRVALERINDMADERFSSRNYYLTSVILAHLGHPQLHGDEIEVLRRSNYELARVGTNLNQVAKAFNTLVKMRGGEKLPEVGKKMASLRREITEHTGKVLRVLEAGTTVWESRGRGQRQRKHK
>NZ_CP006739.1|WP_014607322.1|810_1065_-|hypothetical-protein
MLDLGINSGSISYEVALEVLGQSRQPFMQAIYKEKQKSVPSQVFIRYCENRLAALDEIQETLQPTDLATIERILTKGDLVFKVQ
>NZ_CP006739.1|WP_128723949.1|4663_5530_-|hypothetical-protein
MSSIELSLTKMRARQEANLQKSLLQQLQLPIWTDAQRGVPNSLLRSALFAAIQRGKRPYLKRQVMASVENASITYTGIRLCQDYLTVWECLVHVAREQQLGNRCEVTTYQLLRLLDKKDTGGNRRVLRRQLAELQATALEVRQGRYTYSGSLIDEAYHDEETGRAIIVLNQRIVALYQSDGYTRVSWQIRCDLNTSLAKWLHGFYATHRQPYPYSVAKIHELCGSAAKSLKDFQEKTLAPALEELASVCKNHGEHFSYMIERRPGGKSIVYVTRDVGTKLPLTPEICG
>NZ_CP006739.1|WP_013087965.1|5526_6129_-|recombinase-family-protein
MEKSTYTTNSLRLGYARVSTDDQDMALQLDALAKVQCDRVFSEKASSGKERPQLEECLRTLRRGDVLTVWRLDRLGRSMTELVAIVNDLASRGVTFESLTEHIDTSSASGKFAFHLFSALAEFERNTIKERTRAGLAAARARGKMGGRPAKVTPKAKREMKALYTSQEVSVKDICTRYNITRSTFYRVVLERDYTTKEEA
>NZ_CP006739.1|WP_038211605.1|6305_6536_+|TraY-domain-containing-protein
MASVSLRLPDEVTQRLENLAALTGRSKTFYMVEAIREHIDDLEDLYLAERELEAIRSGNSQTVPLEEVMQRYGMEG
>NZ_CP006739.1|WP_014607314.1|6519_6789_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAWKVELSSLAQKNLDQLDPQIALRVLSFLHERVAPLDDPRSIGESLKGSRLGEFWKYRVGDYRIISSIEDGALRILVVKIGNRREVYR
>NZ_CP006739.1|WP_152534390.1|7152_7665_+|restriction-endonuclease
MSSLDTALHASGLLRLAGWISMLICLLVAGMSWRQAQLRKELLDRQRSLDDLRAMSWKKFELLVGECFRRQGYRVSETGKGGADGGIDLLLHRDSERVLVQCKQWRTFSVGVPVVREMFGLMIHHDADRVKIVCCGNFTRDAVAFAKGKPIDLISGDLFLGLVKDSQGTY
>NZ_CP006739.1|WP_080703188.1|7758_7977_-|hypothetical-protein
MLFAVNAFLYPYSRFFYEKVIGFIVGNNIFVLPAVVMLFAKLMTMMVCFMFAIFIAPIGLAFLYYYHTKQAE
>NZ_CP006739.1|WP_080703189.1|8942_9122_+|hypothetical-protein
MKNKKGNVLIMTLFISSITVIFMTAFQSHPQLKKVARSADEKPINTPEVVEKLKEKYER
>NZ_CP006739.1|WP_080679721.1|9124_9604_+|hypothetical-protein
MAMDGNFREENLLFKLLKSDKRLWIFAIMVALIGTINAEQKADDTQPFKATKAVEAPSTSTAKDFAVKERVDRMAILVHQRNEIFSKLKYFETSGDEVALERIQSELRSIDREISLISDARNEDTDSIYNGNKESKQSKSEEITYKSWDIFKNFGLKGN
>NZ_CP006739.1|WP_013087960.1|9606_9927_+|TrbC/VirB2-family-protein
MKHIFNQLVAKYHHVILAIAISTTSSNALASVGGLGGLTRAKTAAENIKTGLYALVGVIAMIYLIYLGVMAFTEKKSWADFGWGVVYVSLVGGAVALGGWAWTLFA
>NZ_CP006739.1|WP_013087959.1|9931_10315_+|hypothetical-protein
MTDEQSPEEYISYNGLGRSPMIWGIPYMAGLAIMCLSLLGGLLLGTFVASWGWLFSLIGVPMILFVKIICTNDDKAIRILMLEVKWSLLKALNGNAKYHGGTMAIAPTTYGRKLKNVKRYFKKTVCG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP006739_1	1.1\|4596\|26\|NZ_CP006739\|CRISPRCasFinder	4596-4621	26	NC_014111	Xylella fastidiosa plasmid pXF-RIV11, complete sequence	21419-21444	1.0
NZ_CP006739_1	1.1\|4596\|26\|NZ_CP006739\|CRISPRCasFinder	4596-4621	26	NC_014113	Xylella fastidiosa plasmid pXF-RIV19, complete sequence	20686-20711	1.0
NZ_CP006739_1	1.1\|4596\|26\|NZ_CP006739\|CRISPRCasFinder	4596-4621	26	NZ_CP006739	Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence	4596-4621	1.0
NZ_CP006739_1	1.1\|4596\|26\|NZ_CP006739\|CRISPRCasFinder	4596-4621	26	NC_017561	Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence	17135-17160	1.0

1. spacer 1.1|4596|26|NZ_CP006739|CRISPRCasFinder matches to NC_014111 (Xylella fastidiosa plasmid pXF-RIV11, complete sequence) position: , mismatch: 0, identity: 1.0

aatctaggattctgcgacggtacatg	CRISPR spacer
aatctaggattctgcgacggtacatg	Protospacer
**************************

2. spacer 1.1|4596|26|NZ_CP006739|CRISPRCasFinder matches to NC_014113 (Xylella fastidiosa plasmid pXF-RIV19, complete sequence) position: , mismatch: 0, identity: 1.0

aatctaggattctgcgacggtacatg	CRISPR spacer
aatctaggattctgcgacggtacatg	Protospacer
**************************

3. spacer 1.1|4596|26|NZ_CP006739|CRISPRCasFinder matches to NZ_CP006739 (Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aatctaggattctgcgacggtacatg	CRISPR spacer
aatctaggattctgcgacggtacatg	Protospacer
**************************

4. spacer 1.1|4596|26|NZ_CP006739|CRISPRCasFinder matches to NC_017561 (Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

aatctaggattctgcgacggtacatg	CRISPR spacer
aatctaggattctgcgacggtacatg	Protospacer
**************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006740

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006739

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection