CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008696	Pseudomonas chlororaphis strain PA23 chromosome, complete genome	3 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008696_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008696_1

302145-302247

Orphan

Consensus_repeat	Method
GCGCCGGGCCCGGTGTAAAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008696_1

>merge|NZ_CP008696|1|302145-302247|CRISPRCasFinder
GCGCCGGGCCCGGTGTAAAGAGGGGAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCCGCGCTGATCGCGCTGGGCCCGGTGTAAAGAGGG

>NZ_CP008696|1|1|302145-302247|CRISPRCasFinder
GCGCCGGGCCCGGTGTAAAGAGGG	GAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCCGCGCTGATC
GCGCTGGGCCCGGTGTAAAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008696.1\|WP_009046527.1\|293580_294336_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP008696.1\|WP_038630401.1\|306392_307508_+\|bifunctional-transcriptional-activator/DNA-repair-protein-Ada	unknown	unknown	gnl\|CDD\|225080
NZ_CP008696.1\|WP_009046549.1\|314239_316060_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP008696.1\|WP_038630402.1\|307479_307995_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP008696.1\|WP_028683799.1\|301186_301642_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP008696.1\|WP_038630405.1\|308712_310746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225405
NZ_CP008696.1\|WP_009046532.1\|299776_300190_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP008696.1\|WP_009046529.1\|295330_296641_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP008696.1\|WP_038630404.1\|308083_308626_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236441
NZ_CP008696.1\|WP_038630399.1\|304445_305531_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP008696.1\|WP_007930824.1\|300191_300446_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP008696.1\|WP_028683800.1\|298095_299625_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP008696.1\|WP_016702609.1\|301640_302081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_007929953.1\|310907_312314_-\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP008696.1\|WP_007929941.1\|303012_304449_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP008696.1\|WP_009046533.1\|300502_300985_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP008696.1\|WP_155296119.1\|306091_306250_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181242
NZ_CP008696.1\|WP_038630398.1\|294408_295167_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NZ_CP008696.1\|WP_009046530.1\|296672_297959_-\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
NZ_CP008696.1\|WP_016702616.1\|312645_314100_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932

Protein	Function_ID	Function_description	E-value
NZ_CP008696.1\|WP_009046527.1\|293580_294336_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.9669e-23
NZ_CP008696.1\|WP_038630401.1\|306392_307508_+\|bifunctional-transcriptional-activator/DNA-repair-protein-Ada	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	8.04066e-81
NZ_CP008696.1\|WP_009046549.1\|314239_316060_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP008696.1\|WP_038630402.1\|307479_307995_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	3.26867e-11
NZ_CP008696.1\|WP_028683799.1\|301186_301642_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	3.22205e-89
NZ_CP008696.1\|WP_038630405.1\|308712_310746_-\|hypothetical-protein	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	1.00177e-10
NZ_CP008696.1\|WP_009046532.1\|299776_300190_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24
NZ_CP008696.1\|WP_009046529.1\|295330_296641_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.95839e-143
NZ_CP008696.1\|WP_038630404.1\|308083_308626_-\|chorismate-mutase	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	3.78773e-61
NZ_CP008696.1\|WP_038630399.1\|304445_305531_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.70782e-164
NZ_CP008696.1\|WP_007930824.1\|300191_300446_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
NZ_CP008696.1\|WP_028683800.1\|298095_299625_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP008696.1\|WP_007929953.1\|310907_312314_-\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP008696.1\|WP_007929941.1\|303012_304449_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP008696.1\|WP_009046533.1\|300502_300985_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.26189e-83
NZ_CP008696.1\|WP_155296119.1\|306091_306250_+\|hypothetical-protein	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	2.14292e-07
NZ_CP008696.1\|WP_038630398.1\|294408_295167_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	7.68239e-92
NZ_CP008696.1\|WP_009046530.1\|296672_297959_-\|murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.22444e-100
NZ_CP008696.1\|WP_016702616.1\|312645_314100_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0

>NZ_CP008696.1|WP_016702609.1|301640_302081_+|hypothetical-protein
MHGSEEKDRPHSTPEADVRPKLMLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVALLFEAEGRAQKGQLKINDKDANWRVRTTEEGLLLNVVAARALHGEWSGSEVDGRWRLELQLREE
>NZ_CP008696.1|WP_028683799.1|301186_301642_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFTEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>NZ_CP008696.1|WP_009046533.1|300502_300985_+|protein-export-chaperone-SecB
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGEEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>NZ_CP008696.1|WP_007930824.1|300191_300446_+|glutaredoxin-3
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>NZ_CP008696.1|WP_009046532.1|299776_300190_+|rhodanese-like-domain-containing-protein
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>NZ_CP008696.1|WP_028683800.1|298095_299625_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLYASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGNGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDAATGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>NZ_CP008696.1|WP_009046530.1|296672_297959_-|murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDDEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEQARQKALIAQQEAEKKRLREAQASADDSPRKPPRAAPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>NZ_CP008696.1|WP_009046529.1|295330_296641_-|S41-family-peptidase
MLHLSRLTSLALTIALVIGAPLAFAAETAQSTAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>NZ_CP008696.1|WP_038630398.1|294408_295167_-|divergent-polysaccharide-deacetylase-family-protein
MIGLLCLLAFTSTQAAEPAARKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMAWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEDAIGHQLQTAINLARKQGSAVMIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNRAMVGHGKDGVYR
>NZ_CP008696.1|WP_009046527.1|293580_294336_+|ABC-transporter-substrate-binding-protein
MFKRLLLVLASASVLFAASARAAQTPDTSLVLLTENFPPYNMARNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWILLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSAQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>NZ_CP008696.1|WP_007929941.1|303012_304449_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>NZ_CP008696.1|WP_038630399.1|304445_305531_-|nitrogen-regulation-protein-NR(II)
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLALCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>NZ_CP008696.1|WP_155296119.1|306091_306250_+|hypothetical-protein
MATPTMLNDGAAVWLLGSREIGMEHGVVPMARILSSASVSLCVGVAMVIERA
>NZ_CP008696.1|WP_038630401.1|306392_307508_+|bifunctional-transcriptional-activator/DNA-repair-protein-Ada
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGAQEPLVKQLLALLEHNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGRELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQEHTGSTIGFGRFAPIDQIESELRRFFAGESASFATPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYSQIQARQHLRADEPVAG
>NZ_CP008696.1|WP_038630402.1|307479_307995_-|DUF4124-domain-containing-protein
MRVPCLYLLLLAALPAAAQIYRYTDAHGNTAYSDQPPAGVPGQAVELAPLNRIEAPRALTPPGVEPTQAPPTRAPAYTTLELSGVADGGVVRANNGTFEVEVRLQPPLLNEHRLRLLLDDQPYGQPGNLPSLQLVNIDRGEHRLAVQVLDGERVIQQSPPLTFTLQRVHRP
>NZ_CP008696.1|WP_038630404.1|308083_308626_-|chorismate-mutase
MTSRFCLALLTLLLADNACAAPATLSPLLASIEERLAIADQVALSKWDSHKPVEDRPREREVIAGAVAQAPSYKLDGAAVEQFFAAQIEANKLVQYAHLSEWTLQGQAPDAPRPDLVGQIRPQLDRLQKRLLQQLADFSPHRNDPQCPQWLAQATHKGDRAPLRQLALIRATAELCVFKG
>NZ_CP008696.1|WP_038630405.1|308712_310746_-|hypothetical-protein
MQWTRSLGLIACLAFGSTQAAPFYAGKSLAHPLITGLAESSATLAFIKQAGSVKGYYSVDPDEGQPQLLDDFGDATIESVFNIALDDESLTRLVLFKQRGQYRLHAYRYDENDRLYRRLEKLQPALERIAKDRKKLDAPTVKQALRQLTPLNYSVFYEDSGIDEFDQLDHSAGTLVGYFDANGQPITANPPGADQYRYKKTFVEKDGRFLTATYWRGEAPALEGEPLLYNYRASHIAWETEPQRFTGSEDGAYVEYSSFGGAVIAQGAYARGQRTGEWSFSNPDDGWTHGRFVDGKRQGQWTESYGWQTATGEYRDDLREGRWVLSYDEGGESAVTGFQTYVQGVLDGPSEERVDGSTESGSYRNDKREGPWVTQAGRGNFENGLKSGPWILKTDKGHNQSVNFVADKKDGELRETDANGVLVLIEHYKADVLSGTREGYSPSGNLQYSQQYENGKREGRSLGYSEDGKLISDISWHNDRYEGPHLTFLRDGTPATVGRFEGGRFVGLMKQYDQDEVLYEEANWCRFDKRGSTVERCGKQRRFTHGKLSWETDFLFGSPQGSIEYNYETGQKIREKIIGDNDQITQRTYYDNGQVECQKNSVGFTWMTINQQQVKSHESDGQLTGEQLCYHRNGGIKSRELIDNGLSACRIVYDESGKRLSSSPTDCGAPATAAAGQ
>NZ_CP008696.1|WP_007929953.1|310907_312314_-|glutamate--ammonia-ligase
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDDDFFEIGKMFDGSSIAGWKGIEASDMILMPVDETAVLDPFTEEPTLILVCDIIEPSTMQGYDRDPRAIAKRAEEYLKSTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIFSEQGSWMSDQDVEGGNKGHRPGVKGGYFPVPPFDHDHEIRTSMCNAMEEMGLVIEVHHHEVATAGQNEIGVKFNTLVNKGDEVQTLKYCVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>NZ_CP008696.1|WP_016702616.1|312645_314100_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKLIVKVFPEITIKSRPVRTRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETAVSEPKALKEMTERLSCMPGIAHFLQVDEYPLGDFDDIVAKCKQHFGEALAGKVFAVRCKRAGKHEFSSMDVEKYVGSQLRRQCGAAGISLKEPAIEVRMEIRDQRLFVIHSQHNSIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMSHFCFFNLGGRAHELGVMEVAHYIWKKYGSSQRVLFVSVPFEEVLGEILGKVDNSHMGVILKRMMLRAASSIADRLHIDALVTGEAISQVSSQTLPNLSVIDCVTDKLVLRPLIASHKQDIIDLANEIGTADFAKHMPEYCGVISVNPKTHAKRHRVEHEEKEFDMAVLERAIERAKLVPIDRVIDELGQDLQIEEVSEALAGQIVIDIRHPDAQEDDPLELAGIEIKALPFYALNARFKELDPTRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS
>NZ_CP008696.1|WP_009046549.1|314239_316060_+|translational-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLRQSGTLERNELNDERVMDSNDQEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVVINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLDHTDMAEDMTPLYQSIVDNVPAPAVDRDGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAIDTEGKKRNGRILKLMGHHGLHRVDVEEAAAGDIVCISGFDELFISDTLCDPTAVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMGVGRPEVIIREVDGVKQEPFENVTIDIPEESQGKVMEEMGLRKGDLSNMVPDGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGILTSIFDRYAPMKSGHMSGRQNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIVGLNSRDNDLGVNPTKGKKLDNMRASGKDETIALVPPVRFTLEQALEFIQDDELCEVTPKSIRLRKKILDEGERTRAAKKAKN

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Crispr_ID: NZ_CP008696_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008696_2

3031138-3031299

Orphan

Consensus_repeat	Method
GCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008696_2

>merge|NZ_CP008696|2|3031138-3031299|CRISPRCasFinder
GCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGGGGGCGCTGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGCTTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCC

>NZ_CP008696|2|2|3031138-3031299|CRISPRCasFinder
GCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCC	ACGATGGGGGCGCTGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGA
GCAAGCTTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008696.1\|WP_009048832.1\|3035566_3036022_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NZ_CP008696.1\|WP_038632192.1\|3031326_3032241_-\|copper-homeostasis-membrane-protein-CopD	unknown	unknown	gnl\|CDD\|224195
NZ_CP008696.1\|WP_038632177.1\|3018848_3019184_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP008696.1\|WP_007928588.1\|3039597_3039786_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_009048831.1\|3033611_3035444_-\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NZ_CP008696.1\|WP_016704754.1\|3030513_3030963_-\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP008696.1\|WP_038632190.1\|3028920_3029946_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP008696.1\|WP_038632198.1\|3038257_3039175_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP008696.1\|WP_038632186.1\|3025889_3027458_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP008696.1\|WP_009048837.1\|3039805_3040186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223806
NZ_CP008696.1\|WP_038632184.1\|3024078_3025875_-\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NZ_CP008696.1\|WP_038632196.1\|3037142_3038138_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_CP008696.1\|WP_016704756.1\|3032685_3033615_-\|copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
NZ_CP008696.1\|WP_038632181.1\|3021988_3024082_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237737
NZ_CP008696.1\|WP_038632179.1\|3019205_3021992_-\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NZ_CP008696.1\|WP_038632194.1\|3032244_3032628_-\|copper-homeostasis-periplasmic-binding-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_CP008696.1\|WP_016704757.1\|3036550_3037081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_038632175.1\|3016566_3018735_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP008696.1\|WP_038632188.1\|3027945_3028899_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP008696.1\|WP_016704753.1\|3030079_3030517_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159

Protein	Function_ID	Function_description	E-value
NZ_CP008696.1\|WP_009048832.1\|3035566_3036022_-\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.72284e-14
NZ_CP008696.1\|WP_038632192.1\|3031326_3032241_-\|copper-homeostasis-membrane-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	7.6254e-32
NZ_CP008696.1\|WP_038632177.1\|3018848_3019184_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.65397e-11
NZ_CP008696.1\|WP_009048831.1\|3033611_3035444_-\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP008696.1\|WP_016704754.1\|3030513_3030963_-\|DUF411-domain-containing-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	4.33315e-55
NZ_CP008696.1\|WP_038632190.1\|3028920_3029946_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.53646e-28
NZ_CP008696.1\|WP_038632198.1\|3038257_3039175_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.10233e-96
NZ_CP008696.1\|WP_038632186.1\|3025889_3027458_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP008696.1\|WP_038632184.1\|3024078_3025875_-\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP008696.1\|WP_038632196.1\|3037142_3038138_-\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
NZ_CP008696.1\|WP_016704756.1\|3032685_3033615_-\|copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	7.92865e-123
NZ_CP008696.1\|WP_038632181.1\|3021988_3024082_-\|4-alpha-glucanotransferase	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	9.57505e-163
NZ_CP008696.1\|WP_038632179.1\|3019205_3021992_-\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NZ_CP008696.1\|WP_038632194.1\|3032244_3032628_-\|copper-homeostasis-periplasmic-binding-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	3.34517e-24
NZ_CP008696.1\|WP_009048837.1\|3039805_3040186_-\|hypothetical-protein	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	0.000613861
NZ_CP008696.1\|WP_038632175.1\|3016566_3018735_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP008696.1\|WP_038632188.1\|3027945_3028899_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	6.58155e-177
NZ_CP008696.1\|WP_016704753.1\|3030079_3030517_-\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	1.86287e-36

>NZ_CP008696.1|WP_016704754.1|3030513_3030963_-|DUF411-domain-containing-protein
MHNTLRLAALSALLVGSLAQAADLIPIDVHRDANCGCCKKWIEHLQANGFKVNDHVESNMSEVKQRLGVAPRLASCHTAVINGKFVEGHVPADQVLALSKRDDLLGVAAPGMPMGSPGMEMDGMPADAYQVIGLTKDGKDVVVADYPAH
>NZ_CP008696.1|WP_016704753.1|3030079_3030517_-|DedA-family-protein
MILTACLGLFLAAFGAATLLPLQSEAVLVGLLLNGQFNLWLLLAVATLGNVLGSLVNWWLGQRLERYKDRRWFPVGPRHLQTARNHYQRYGHWSLLLSWLPIIGDPLTLVAGVMGEPLKRFLLVVTLAKGARYGVLAWMTLGWVG
>NZ_CP008696.1|WP_038632190.1|3028920_3029946_-|alpha/beta-hydrolase
MSLSPTRWSLTRWLPGLLLTAALPALAAQGPAYGPELQGFDYPYPLQHFAFESQGQALQMGYMDVPAKGTPNGRSVLLMHGKNFCGATWDSSIKALSDAGYRVIAADQIGFCTSSKPEHYQYSFQQLAQNTRQLLDRLGIQQVSLLGHSTGGMLATRYALQYPEQVQQLALVNPIGLEDWKALGVPYRSVDQWYARELKLSAEGIRNYERSTYYGGRWKPEFERWVDMLAGLNQGPGHTRVAWNSALIYDMIFTQPVYYEFKDLKMPTLLLIGTADTTAIGSDIAPPAVKARIGNYQVLGKQVAGLIPHSTLIEFPGLGHAPQMEEPAQFHQALLGWLASH
>NZ_CP008696.1|WP_038632188.1|3027945_3028899_-|D-2-hydroxyacid-dehydrogenase-family-protein
MSVQIAVIDDWQDVARDVVDWSVLSGIGQVSFIHDYPSDTAAMSERLAPFEVICVMRERSRFDAALLRSLPRLKLLLTGGMRNAAIDLAAAASLGIQVCGTDSYKHAAPELTWALIMAQTRNLLSEASALRAGLWQQGLGGDLHGKTLGILGLGSIGQRVAQFGQVFGMRVIAWSENLTAERAAAAGVTYVNKQQLFEQADVLSVHLVLSERSRGLVDAQALAWMKPSALLVNTARGPIVDEAALISALERGRLAGAALDVFEQEPLPLDHPLRRLPNVLATPHVGYVSQQNYRQFFTQMIEDIQAWAAGQPIRQLG
>NZ_CP008696.1|WP_038632186.1|3025889_3027458_-|glycogen-synthase-GlgA
MTSAVLQTQGKHPLPLAGETASTSILAPGGKTSLPLIHHNPNRKKVLFVTSEIADLVKTGGLGDVSAALPRAMAHLHDVRLLIPGYRQVMHSENPIHIIGELGGHAALPACKIGRMDMPDGLVIYVLICPELYEREGTPYGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWCPDLVHAHDWPAGLAPAYMHWRGQRTPTLFTIHNLAYQGVVSLASCPELGIPEHALQQEGMEFYGKLSFLKAGMAYASHITTVSATYAQEITTPAFGCGLDGFLASKTQQGLLSGIPNGIDESWDAATDPHLSTPFAIGDWQGKAANAAHVRQMFGLDPGNGPLFAVVSRLVYQKGLDLTEGVAEYIVKSGGQIAIIGRGEPEEEQAMRALAARFPGRIGVNIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFDESTVASYEEALSRAFKVFAYPQLLNAMRCRAMAAPFNWCKAVEPYAELYEQLVAKALGKSAKP
>NZ_CP008696.1|WP_038632184.1|3024078_3025875_-|malto-oligosyltrehalose-trehalohydrolase
MPSRTLETWPHGTVPLDAQRTRFALWAPDAQHVSVELEHGVSLPMLPQANGWFMVVGHCPPGTRYRFSIDNEIRVPDPASRAQDGDVHGPSLVVDPRAYRWQHPHWQGRPWHQAVIYELHVGVLGGYREVEKHLPRLAQLGITAIELMPLAEFPGDRNWGYDGVLPYAPEASYGSPDDLKHLIDCAHGLDLAVMLDVVYNHFGPDGNYLQHYAKAFFREDRHTPWGAAIDFRRQPVRDFFIDNALMWLLEYRFDGLRLDAVHAIDDPDFLSELAQRVRQRIDPARQVWLTVENEYNQASLLEQHFDAQWNDDGHNALHVLLTGETDAYYADFAKRPTEKLARCLSQGFAYQGHVTRHGTARGEPSGHLPPSAFVLFLQNHDQIGNRAFGERLVRLAEPQALRAATVLLLLSPMIPLLFMGDELAAPQPFLFFTSHHGELADAVREGRRGEFAAFSAFADPHKREQIPDPNAPDTFLASRPQADPVQGEQTLALYRQLLQLRREHIVPYLPGAEALGAEVLAEGALCARWRLGNGQELRIDLNLSPHQVEQRPSNAAQRLFDYPAQAFERLQQGHLAPYSALVSLGAAAPLPDLDGERP
>NZ_CP008696.1|WP_038632181.1|3021988_3024082_-|4-alpha-glucanotransferase
MSDAQLEILASRAGLAVDWIDANGRPQRVEPRVLRSVLASLGHPADNDRQIEASLRQLLQVQQSRQLPPLLTADAGQGLDLGHYFAPDTPCEIHLEDGSVLNLKLDANSMLPGLVPVGYQEVSIAGQHFTLAVAPERCYSVADAVDQATPRAWGLSVQLYSLRRSGDGGYGDTQALEDLVRVAGERGAEAIAISPLHAMFSSDTGRYSPYSPSSRLFLNSLYAAPGTILGERAWRSAIDASGLGSQLQQLEQQPMVDWPVAAQARQKVLRALYEGFCQGEHPLHQDFASFRHASGEALENHCRFEAIQAQRAARGESLDWREWPDAWRTPRSPALAHFAVEHASDIGFYAFCQWLIARCLERVQSTARSSGMGIGLIADLAVGADGGGSQAWSRQDELLAALTVGAPPDILNRQGQGWGISAFSPEGLVRNGFHAFIEMLRANFAHAGGLRIDHVMGLQRLWVIPLGAPPCDGAYLYYPMDDLLRLLTLESHRHQAIVLGEDLGTVPDGLREKLSARAMLGMRVLLFEQEHGTHFRPILDWPDNALATTSTHDLPTLNGWWQGRDIDWSARLGLVDESGETHWREHRQREREGLRHALSRDPQNFREAPHIATHEADQVVDASVRFLGHTRAPLVLLPLEDALGIDEQANLPGTLDSHPNWRRRLAGSSAALLDDPDAARRLELLACARLQAHERDR
>NZ_CP008696.1|WP_038632179.1|3019205_3021992_-|malto-oligosyltrehalose-synthase
MNQATTRPVRATLRLQFHRGFSLDDAVPLVPYFARLGISHLYASPLLCARAGSMHGYDVVDPTRVNPELGGEAALERLVRSLRQHDMGLLLDIVSNHMAVGGADNPWWQDLLRWGRLSPYGEFFDIQWHSPDPLMEGQLLLPFLGSDYGVALQEGTLRLCFDAERGEFHVEHYQHHFPICPSDYGELLRVPGELDAESAERLKPLADAFSTLRYQPDAHTQAEPLQRQLQDAASAPQVRAAIEQQLAQYDARQPEGFARLHALLEQQSYRLASWRTAADDINWRRFFDINELGGLRVERPAVFEATHGKIFQLIAAGLVDGLRIDHIDGLADPRGYCRKLRRRVDALRPGQHLPIYVEKILGTGETLRRDWCVDGSTGYEFMNQLSLLQHDPQGAEPLAELWSRHSERPAAFLEEARLARQQLLNGSLASDFESVAQALLQVARNDVMSRDLTLGAIRRALQELIVHFPVYRTYIGACGRSAADEAFFQQALQGARDTLGEADWPVLAYLQQWLGGRGWRQLPPGRQRKVLKHACVRFQQLTSPTAAKAVEDTALYRSAVLLSRNDVGFSTEQFCAPVEAFHAVCRERLATFPDNLLASATHDHKRGEDARARLAVLSELSPWYVAQVEHWRSLAQALRSDPQAPGAGDELILYQALLGSWPLELHSDDSQGLRDYARRLWQWQEKALREAKLHSSWAAANEAYESAVHQFIERLLLSPEGLPLRSAIGTAVQRIAPAGALNGLAQSLLRMTVPGVPDLYQGNEFWDFSLVDPDNRRPVDFATRQQALDPCGETMELLANWRDGRIKQALIAATLERRGEYPQLFRRGTYQPLEVQGRHADKVLAFMREHQGQRAVVIVPRLVAGLLESGAHPRVDAPDWGDTRVHLPFAAPGQNLKGLFSTGAVTPHKDLMISSALRDFPVNLFIQT
>NZ_CP008696.1|WP_038632177.1|3018848_3019184_-|DUF2934-domain-containing-protein
MSTDDKRIREFAYQIWESEGRPDGQEHRHWEMARKLAEAEALAPSKPPRATRAASAKPGKPAAKPKVVAKPAAAAPLVPPGERTPPGEKVPPGGKSSAAKKPRAPRKPAAS
>NZ_CP008696.1|WP_038632175.1|3016566_3018735_-|glycogen-debranching-protein-GlgX
MTTSKTATTPKTSPATEPSRIREGLPFPLGATWDGLGVNFALFSANATKVELCLFDATGEVELERIELPEYTDEIFHGYLPDAHPGLIYGYRVHGPYDPANGHRFNPNKLLIDPYAKQLVGELKWSEALFGYTIGHPDADLSFDERDSAPFVPKCKVIDPAHTWGHDHRVSVPWDKTIIYETHVRGFTMRHPSVPEAVRGTFAGLMVDDVLEHIRKLGVSSVELLPIHAFVNDQHLLHKGMTNYWGYNSIAFFAPDPRYLASGKIAEFKEMVAHLHEAGLELILDVVYNHTAEGNEQGPTLSMRGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMHVDGFRFDLATILGRYHDGFDERHSFLVACRQDPVLRQVKLIAEPWDIGPGGYQVGGFPPGWVEWNDKFRDTVRAFWKGDDGQLADFAARMTASGEMFNQRGRRPYTSVNFVTAHDGFTLHDLVSYNDKHNEANDEDNQDGSNHNLSWNHGVEGPTDDPQINALRLRQMRNFFATLLLAQGTPMLVAGDEFARTQHGNNNAYCQDSEIGWVNWDLDDDGKSLLKFVKRLVKLRMAYPILRRGRFLVGNYNEDIGVKDVTWLAPDASEMTTEQWQDSHGRCLGMLLDGRAQETGIRRPGADATLLLVVNAHHDIVNFCLPEVPDGGFWTCMLDTNQPSVKGQERFEFGHQYSVTGRSLLLFELQHEGED
>NZ_CP008696.1|WP_038632192.1|3031326_3032241_-|copper-homeostasis-membrane-protein-CopD
MGELINVALRFALYLDLMLLFGLALFGLYGLRGAQSRRRFRRPLATTLVLGALLSGAALLQLVLSMSGATRLAELDPALVPVLVLETDVGQSWLLRLAALLLAGVLLLFSSGWPRFTLYGLILCTATALASLAWGGHGAMSEGGQRYLHLGSDILHLLGAGAWLGALAAFALLLRRGACEGEQQAGHLLDALKGFASLGTLIVVSLSLSGVLNYLLIVGPDLATLSASTYGLLLSLKVAVFASMLVFAALNRFHLVPQLEQALHRASPQAALPALRRSMLLELAAALLIVGLVAMLGILSPAPE
>NZ_CP008696.1|WP_038632194.1|3032244_3032628_-|copper-homeostasis-periplasmic-binding-protein-CopC
MSYLKHLAIAVTFGAGLTLAGVVQAHPKLLASTPAEGAKGAAPAKIELQFSEPLTTKFSGARLLMTGMPGMSHAPMPVKASVAGGSDPKSMIISPATPLPKGSYKVEWRAVSADTHPITGNLTFEVN
>NZ_CP008696.1|WP_016704756.1|3032685_3033615_-|copper-resistance-protein-B
MMPKNALTLFAALLGLSAGPLQAAESMDHSSMDHSSMPASAMPGNPMPGMDHSQMTGMDGEPLQTMEPAAPTQSRTPIPVLTDADRRAAFPPMAGHGVHDKAINSLWLVDRLEYQDADDGSALAWEMNGWIGGDIDRLWLRSEGERTNGRTENAQVEALWGHAIGPWWDVVSGVRQDFKPGAPQTWAALGLQGMALYNFESQATAYLGEGGQSALGLQAEYDILLTNRLILQPNAEVSLYGKNDPQRGIGSGLSSLEAGLRLRYELHRQFAPYVGVTWSRSYGKTADYAREEGEDSSEARLVLGVRLWF
>NZ_CP008696.1|WP_009048831.1|3033611_3035444_-|copper-resistance-system-multicopper-oxidase
MHVKPTRRSFIKGLAAGGVLAGTGLWQQPLWARSEDGQLPALSGQQFDLFIGESQVNYSGTSRTAMTINGGLPGPLLRWREGDTVTIRVRNRLKEDTSIHWHGLILPANMDGVPGLSFHGIAPDGLYEYRFKVRQNGTYWYHSHSGLQEQAGVYGPLVIEAREPEPFQYDRDYVVMLSDWSDEAPERLMHILKKQPGYYNFHKRTVGDFIEDVSRDGWAATLADRKMWAQMKMTPTDLADVSGYTYTYLINGQSPGGNWTGLFKPGEKLRLRLINGSAMSYFDLRIPGLKMTVVAADGQYVQPVSVDELRIAVAETYDVLVEPGSQEAYTLFAQAMDRSGYARGTLSQRPGLSATVPPLDPRPLISMADMGMDHGSMAGMDMGAMPGMDHGQMQGMDHSQMQGMDSSNMAGMDHSGMAGMSGMDHGAMGGAMQSHPASEDGNPLVDMQTMSPTPKLADPGIGLRNNGRRVLTYADLRSTFEDPDGREPSRTIELHLTGHMEKFSWSFDGIKFSDAEPLRLTYGERVRITLVNDTMMTHPIHLHGMWSDLEDEQGRFLVRKHTIDMPPGSKRSYRVTADALGRWAYHCHLLFHMEMGMFREVRVDEAGSAA
>NZ_CP008696.1|WP_009048832.1|3035566_3036022_-|SRPBCC-family-protein
MEQRQQHLLDELIFHELYIDAPIDTVYYYVTQPDRWHEWHPASLRADTGLAGSLPAGHRFSKTIDLLGLQIHMSCRVLVAVFPKEFKIVFSSPPADGSIHYQLCKYGDGTLFKRTLHYCSDLNLVSLRPRIEHLSQLAMVNLKRNLEKIAH
>NZ_CP008696.1|WP_016704757.1|3036550_3037081_+|hypothetical-protein
MTIGYVGGWTSKAGLLVQDTGTRGKPVSQSVKVKQMLALVGQNPLALNVFKMDEMKLHKQIKGFDPENISAKQLGNMSTFLKQKGLISDVTAMTLLNAGDKFDRFGVQSDPDAKFNALEYFAIQLDNIQTNNLKGNKYASYLIPEYKKAIYVLQNLQSYGKGNGTTVTDKNHSAKA
>NZ_CP008696.1|WP_038632196.1|3037142_3038138_-|aldo/keto-reductase
MQTRQLGKNGPQVSAIGLGCMGMTDFYTTGTDTKEATATLHRALELGINLLDTADMYGPHSNEILIGQAIRGKRDQVFLASKFGIVRDPGDPAARGVNGRPDYIRQAIDGTLQRLGVETLDLYYQHRIDPDVAIEETVGAMAELVQAGKVRYLGLSEASAATLERAHKVHPISALQSEYSLWSRDQEDNGCLAACQRLGIAFVPYSPLGRGFLTGALKSPEDFAADDYRRFSPRFQGENFTKNLLLVEQVKQLAVAKGITTGQLALAWVLAQGDYLIPIPGTKQRKYLEENVAALQVHLSADELLALERIFSPDATAGERYPPAVMALLDR
>NZ_CP008696.1|WP_038632198.1|3038257_3039175_+|LysR-family-transcriptional-regulator
MDRFNAMRVFTRIVDLGGFAKAADSLQMPRASVTVLIKQLEAHLGVQLLLRTTRQVTPTLDGAAYYQRCVRLLADLEETEAVFSVARHNPRGTLRIDMPAGIGRLVVIPALPAFSERYPLIDLEIGLNDRPVDLIREGVDCVLRGGLCLDDSLVARPLLALEQVTCASAAYLRQRGVPQSLDDLAGHQMIEYFSSVSGKRYGLEFEVQGQVLLPELPKQVSVNSADGYLAACEAGYGLVQTPYYHVAQQLAEGRLIEVLRHIPPPRMPLSALYPPHRHLSTRVRVFVDWLVELFAQPGIHNTRLA
>NZ_CP008696.1|WP_007928588.1|3039597_3039786_+|hypothetical-protein
MTQKQRLIYSIVISLVVLGIMLGLSYLQNAGMITEKMFQYIAIGVAVTVVVINGVMRRKVKP
>NZ_CP008696.1|WP_009048837.1|3039805_3040186_-|hypothetical-protein
MYDPQLPTDGHTAQPASSLNAGAGVFGKQAERNRNERIRHLLKSFGLRTSLIRLKVIDALLQAAENQRALGVRGIHSHLLELDIPLSFLSVREVLKRLCSEGVITLNADKSFSLHQQAEAILDGRD

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Crispr_ID: NZ_CP008696_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008696_3

5255458-5255619

Orphan

Consensus_repeat	Method
AGTTCGGAATCCGAACTCAG	CRT
CAGCTCAGTTCGGAATCCGAACTCA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP008696_3

>merge|NZ_CP008696|3|5255458-5255619|CRT,PILER-CR
AGTTCGGATTCCGAACTCAGCAGAATTCCACCCAGCCTCCACTGAGTTCGGAATCCGAACTCAGTGACAACTCAGGCATTCAACCCATTTTTCAGCTCAGTTCGGAATCCGAACCAAGCCTAAAACCGCAGAGTTCCCGCTCAGTTCGGAATCCGAACTCAT

>NZ_CP008696|3|1|5255458-5255619|CRT
AGTTCGGATTCCGAACTCAG	CAGAATTCCACCCAGCCTCCACTG
AGTTCGGAATCCGAACTCAG	TGACAACTCAGGCATTCAACCCATTTTTCAGCTC
AGTTCGGAATCCGAACCAAG	CCTAAAACCGCAGAGTTCCCGCTC
AGTTCGGAATCCGAACTCAT

>NZ_CP008696|3|1|5255499-5255618|PILER-CR
CTGAGTTCGGAATCCGAACTCAGTG	ACAACTCAGGCATTCAACCCATTTTTCAG
CTCAGTTCGGAATCCGAACCAAGCC	TAAAACCGCAGAGTTCCCGCTC
AGTTCGGAATCCGAACTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008696.1\|WP_038634508.1\|5251037_5252039_+\|nucleoid-associated-protein-YejK	unknown	unknown	gnl\|CDD\|178993
NZ_CP008696.1\|WP_038636818.1\|5257288_5257828_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NZ_CP008696.1\|WP_051673157.1\|5257844_5258357_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
NZ_CP008696.1\|WP_038634500.1\|5248763_5250110_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP008696.1\|WP_038634511.1\|5252324_5254052_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP008696.1\|WP_038634529.1\|5265098_5266241_+\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP008696.1\|WP_038634491.1\|5247138_5247840_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP008696.1\|WP_144241884.1\|5259097_5259265_+\|CrpP-family-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_051673156.1\|5252082_5252328_+\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NZ_CP008696.1\|WP_144241847.1\|5263692_5264973_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_038634494.1\|5247836_5248565_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP008696.1\|WP_038634517.1\|5256557_5257283_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP008696.1\|WP_038634505.1\|5250801_5251038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_038634532.1\|5266237_5267953_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP008696.1\|WP_038634527.1\|5261511_5263464_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677
NZ_CP008696.1\|WP_038634524.1\|5259364_5261281_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NZ_CP008696.1\|WP_038634497.1\|5248548_5248767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_038634514.1\|5254080_5254785_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP008696.1\|WP_038634503.1\|5250284_5250809_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008696.1\|WP_038634521.1\|5258414_5258948_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008696.1\|WP_038636818.1\|5257288_5257828_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	2.04239e-72
NZ_CP008696.1\|WP_051673157.1\|5257844_5258357_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	8.69303e-68
NZ_CP008696.1\|WP_038634500.1\|5248763_5250110_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP008696.1\|WP_038634511.1\|5252324_5254052_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	9.10924e-138
NZ_CP008696.1\|WP_038634529.1\|5265098_5266241_+\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	7.22654e-53
NZ_CP008696.1\|WP_038634491.1\|5247138_5247840_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	8.13827e-08
NZ_CP008696.1\|WP_051673156.1\|5252082_5252328_+\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	1.0096e-07
NZ_CP008696.1\|WP_038634494.1\|5247836_5248565_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	5.12766e-12
NZ_CP008696.1\|WP_038634517.1\|5256557_5257283_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	5.88371e-112
NZ_CP008696.1\|WP_038634532.1\|5266237_5267953_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	1.66064e-149
NZ_CP008696.1\|WP_038634527.1\|5261511_5263464_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.80146e-40
NZ_CP008696.1\|WP_038634524.1\|5259364_5261281_+\|type-I-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	1.92594e-163
NZ_CP008696.1\|WP_038634514.1\|5254080_5254785_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	9.83299e-57
NZ_CP008696.1\|WP_038634508.1\|5251037_5252039_+\|nucleoid-associated-protein-YejK	gnl\|CDD\|178993	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated.	0

>NZ_CP008696.1|WP_038634514.1|5254080_5254785_+|DUF2857-domain-containing-protein
MSKTPINEAILSQVLHNVRNGQLRRCIEMGLEPEILAQIQQPAALSLLLNTPVSWCSVTIDGEMVKKILTGAQRSDEEVRMIERALRLGGTTNMLQQFFGLSPQDVALQRLMMGVTARRGRWREFSEDTDAALWYRWTHLMKEHQVELEDSIAMLDIAMLVAEEMNSPQNGDTDETAENLSLAIIWNRIQTWIKDGLYPPSREKNWNPRKLQLVSTPNQRPSVVASSVEGDPEL
>NZ_CP008696.1|WP_038634511.1|5252324_5254052_+|ParB-N-terminal-domain-containing-protein
MKPSIASMKEQLLKPAFQQNAPAAQRMSDPIVDTPLVLTLDQTLPWDSNPRTTRNPKYDEIKESIRQRGLDTPPPVTRRPGEEKYRIRNGGNTRLAILNELYRETGDDKYFRFHSLFRPWDAVRGEIISLTGHLAENDLQGQLLFIERAVGVDQARTLYEQEVGEKISLRELSRRLSADGYPVSASHLSRMQDTIRFLLPAIPGVLYSGLGVDRIIKLLSLRKTALQCWEVNLKDVERKDDYDLIYQDVLAQFEGDAEDFLFQRFQDELIHQLKEPLGLGYEAILLEITQGHDQLRRSTPVLEMPQSTTGIASTEPTPQGQDATESGKTAPGGTTGGQQTSRNTLERTHTNPPSLPELSDAEKQARLDGHVASPVTTSARVQQVKQRLAAMDGEELPDFSANALRAIPVQAGGLHPISDLWYIEREIDSPSQLRLHIAQLAREVATSVQAPGEIFEVEGGVGFSYRHPEGDVEVSATAQHTLTLLQSLSGSIAIALNMIQLQSDLPADALSEFEFAAGLGQLLLGQPTTKDLPPNDEGRLSDGALVKLFRIIRLARRLIDIEIRSLNESTTQAES
>NZ_CP008696.1|WP_051673156.1|5252082_5252328_+|Arc-family-DNA-binding-protein
MSQQAQRQFQEKFVVRLPDGMRDKIASQARSNDRSMNSEIVHRLEYTTELETALERANKIIDKLLSGASAGTAALHAGAEA
>NZ_CP008696.1|WP_038634508.1|5251037_5252039_+|nucleoid-associated-protein-YejK
MPIRHCIVHMIDKKPDGTPAVLHARDSELAESAATENMLADLNESYNAKQGKAWGLFHPESGAFPFSGWLKEYLEGRQDFTAFSRVAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLAIALLHHSEGVAVTDELDVTPSRHLDLGQLHLAARINVSEWQNNKQSRQYISFIKGKNGKKVSEYFRDFIGCQEGVDGPGETRTLLRAFNDFVESEDLPEESAREKTKTLVDYASSQTRLGEPVGLEELSELIDENRPKAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFEAHLLGSRIEHDEEAGTLIIKGLPTQLTDQLKRR
>NZ_CP008696.1|WP_038634505.1|5250801_5251038_+|hypothetical-protein
MNSPVRTSRNGLRKLMEFAVASGWSVSRSAGGHIKFTKPGFASIFTSSTASDHRSGLNAKAQLRRADRLHNQPTQEAR
>NZ_CP008696.1|WP_038634503.1|5250284_5250809_+|hypothetical-protein
MQSNAVLFPSIQANDPFDASTVAYAFNQGINSVELDALAQAIGRLGRDHSTVVAASMKADLQEFEDLGYITLNPTSSGTLSVDLICAGALLSNYFWAVWVPRHLNNCSLKVSVMAHLEPRAEVQHCTVVFRIPGPRETTRAFLTELGTKFPGHEPEIIAIQVGNRLEQEEVADE
>NZ_CP008696.1|WP_038634500.1|5248763_5250110_+|replicative-DNA-helicase
MSLLDLSPPYSIEAEQGVLGGLLLDNNTWDLIADQLVEEDFFKHEHRVLFRAIAILAGKATPFDVVTVHDALPEPAAVGGLAYLGELAKNIPSVANIEHYAEIVRNRSHLRRLMSLGFQCSREAADQQASADEVQESIEQQLFALGQDKSPTESIDLNQRLLKIVGQIDDRFNGNVTLTGLPSGLDDLDEKTTGWQPADLIILAARPSMGKTSLALNFVDSALQKEPKKSVQVYSLEMPGDALIYRLLAILGHLDLRNLLTGALEDEDWPKLSAAVSRMNNYGDRLVIDDEAGLTPAALRAKARRFARKYGNPSLIMIDYLQLMNCPGQENRANEISAISRALKALAKEMDCPVIALSQLNRGLETRQNKRPVNADLRDSGAIEQDADVIMFVYRDEVYHPQTEFKGIAELIIGKQRQGPTGTVRTAFIPSQTRFANLSASTWQGVSE
>NZ_CP008696.1|WP_038634497.1|5248548_5248767_+|hypothetical-protein
MKNKIEDLRNHLFVTIEGLLDEDKPMELDRAKAVAEVAQVMINSAKVEVDMVKALGAANGSGFLQIGQEGEK
>NZ_CP008696.1|WP_038634494.1|5247836_5248565_+|HNH-endonuclease
MSAEFKLSPLALAALTHARSKLLTVEPPRARRYWTAAEEEMLKARYPNERNEAIAADLGRSVQQIYGKASRLGLKKSEELLRLILADCGRQVSSLHLGKPFKPGQKPWNTGLKGIAVNGRAKETQFKPGHKPNNWLPIGCTRTADGYLQRKVTDTGYPPADWIPVHVLLWEEHNGPVPAGQCVCFIDGNKSRIVLENLELITRAERMRRNTIHRYPEELKSAIRAVGKLKRVIREVEHEKQD
>NZ_CP008696.1|WP_038634491.1|5247138_5247840_+|DUF2786-domain-containing-protein
MMDKQKVLSKVAKLMALAKSNGASANEVETALRQARNLMKRYNLEHVEVEAHNVDEVSVVTNTRRAPQNWLHSLAATCAKAFDCSHLAYFNPVSGWSFKFLGKGISPELAAYTYSMLHRQLVAARREHVAQQKRCKLKTKRHRGQLFTEGWLNAVSFKVAQFAGSIDDTTQGEIKAYLELHHPQLTTQTIEPLEAKGHDTGSMIAGWSQGEKATLHRGVGKERHTSLFFGSGQ
>NZ_CP008696.1|WP_038634517.1|5256557_5257283_+|TIGR03761-family-integrating-conjugative-element-protein
MADNYRLNIGSLRSDVNLTLHTHHAARIWMGRPKTDAKAGIIGLSGFCSIVNRMSRGAQQDDPYSDWWMINLEDKINESKDALKTIEDRLDTAMAELPPAITISNNLSIQPVSLPLFISNPLGFQAVYLLTNYDEIVRRILLAQHVGLIGRRDMEMWIDEGAAVLRKLFGLAQLYKYSGAARDDFAANNAKAEAARKMYERYGDIPQDILEGTRRSNFAPPITRGQPQTEQPDHFDEGDED
>NZ_CP008696.1|WP_038636818.1|5257288_5257828_+|DUF3158-family-protein
MGQTTANQGVLQQTAFRSLQQDAFQGLQHGASLKGLLKPFKGKGELDQLADQCRAIEAGLKALAQEVLDQTKRHPFPLLPVRMTEQNTQAGTMFLRWQKVMDRRMGVGVWADMVRSPKTPETLLQDLLALEQQRITLNMQMSLIHSIAKQASECAEKMGQAEATYFARLQQHTNQSQHQ
>NZ_CP008696.1|WP_051673157.1|5257844_5258357_+|single-stranded-DNA-binding-protein
MGTPISGWEGNIGSAPEFKEFPNGNKEPRRLLRINVYFDNSIPKEGGGYEDRGGFWANVEWWHKDASHYTNLFQKGMRVQVTGRAVMDSWKTDEGEFEALKVQATRVAILPHRISMVNLAPSQGQSSQQNSRPQSPSPSPSPSQDNAQRNQPDSQGSHDSDFYPDSDPHF
>NZ_CP008696.1|WP_038634521.1|5258414_5258948_+|hypothetical-protein
MIQRHPLPFFLLAGVLKMLLGDDEVRNSEGWFLVAADHPELGRLYWRYSDESSVNAPDYYGITDNARLASWVLPEWKTSDVYAEDYSDLSSSTARYFMRELFNSERFGSDYLESFDWDTERLHVELSGELAVLQRRSGQCEEDFVTWVKSATWFDTPVSAESTIQRLKNRAIHRIFG
>NZ_CP008696.1|WP_144241884.1|5259097_5259265_+|CrpP-family-protein
MDRRHQNNPHPTVEAAGAAAAQKGLRVCSCPYRHPAMKASWLKGFAQEQQLSLDL
>NZ_CP008696.1|WP_038634524.1|5259364_5261281_+|type-I-DNA-topoisomerase
MKLMIIESPGKLKKLRPMMKKLRPHEDWQVLASGGHIRDLPESGMNDSEITTGVRKDYKLIYKVLGRRLGNLRAIKDAVEKADEVYLATDPDREGESISWHIREAAGIKMYQRIAFNEITQTRVKEALENPRQIDMNRVAAQECRRAMDRLVGYMVTKELRRLMGKPTTAGRVQSPAVYLVVLLERQIRNFVVVVHFGARLHFLSQDGQSSWRADWQPVPDFATKDHPYIEDIKLAELVASTRNVVIESCEDRKVEKTPPAPFISSTLQQAASNALKWDPDKTMKVAQRLFEQGLITYHRTDNPNVPDEAMGDIRAVARSLGVKPVAEKRTFNSAEGAQEGHPAITPTDWAAPIAGEDPEEQALYKLIRIRALASQMEAAIYDVRTAKLLAVGPNGKPLRFSSTGRTINYQGWLKLLQQDDTDGVEAESAEADNPVPALTPRQILTVQNRELLKKKTQPPGRYTKASLIKEMERRGIGRPGTFASILTNITSKGLIVEKSRKLMPAPLGEETIARLEGVFSFLELTFTRELERDLDRIAQGQDTYRSVIAKLHQRLEGELSSQRGQPSVPMQMTTPTAATIQSSEFKCGKCGQGLVRRTKTGEGGWDFWGCSGYKGGCSVSYPALKNGTPDFTKPRGL
>NZ_CP008696.1|WP_038634527.1|5261511_5263464_+|DEAD/DEAH-box-helicase
MSRPRLTNRAPTLLGKAVFDGYDFGLQLQFVEGANRLLLEHDGFFIRRTEHPLHRYWRVPKKQLLEGLDLIFHRLMELGEGRFTETSQSFCQKLEAAQSAPDRQAFTWGMIFRLAPLAQGGVLLSGDYHPGVVAVSRRMHGIFLGHSRSWRIDATPELVRSNLILEMGLSEDQFEILDTVQELLSDGSVVPAETITRINLGGPAQERVASASDEISSDVYLAAVPSIERTEFTVEQVTQALQGYSLMDHQPAGILHLLQRTSALLADDMGLGKTRQAIIAAAIRAAGRPVLVITLSSLLINWQREIQMVYPEASIALQVFDPVAEWTVINYERLGDYVLQAGHFVVMVIDEAHRLKEPTAAWTRHGFDIAAKVPNRYLLTGTPILNRESELHTLLRLSGHPVGQLSLKDFCEQFAGNPEFRKNLRDAIGDWMLRRSKDVLPNLRGKQRQTLPVVLTEDEQREYDRIRLEDRPSLARLGSLRLFLEQVKVRIVMELLSELDVEDKVLLFTEFKETVTTLRTLCDAAGYGCVTMVGSDSIGKRQKAIDQFQTDPDTRVFAGTTSAAGTGYNLTAANYVMFLGLPWTPGLQDQAEDRAYRNGQLRAVFVIAPLVENTIDQMLWQMLLDKRQIAQDLIEPEAAALTRNELLSRV
>NZ_CP008696.1|WP_144241847.1|5263692_5264973_+|hypothetical-protein
MPSIDVKSALVAWVVLVLLGLASYIIMLSVTTWLFGTSISLFKDIPRDQPRIALTLAVPTTIGFTTFTWMLFFSEDFLGSLLSVATLFLTTSLTCLLIYILTPFKKLVKKSVITTHKISHSRKITSQPFKKLTPKEIVKRLKVNRRSEHALELFMRFIKRRRPRVLLKQNNLSYLKNILCIAIKKHTSPKGKKLRVLKELFLMFWVSACVFFTAGYAALPTLLTINSYLDKETSETAKHLASMSMLTLTFTLIPTLCFYCSKGDIYRRALWGLLAAFIMPCVLIAITPGALSRITYTAAGGLDVRHKLSERFVLGDDYELQDLNGPVWKTRVVSNRKVEIQAFRLFSFGDILLLCPSHLLKLDLKELKDHTQYCISTFNSKVTRKPQLLVFGKNSVHVGMCMAPFYWKFEHWLRWDDLKIRHAAPH
>NZ_CP008696.1|WP_038634529.1|5265098_5266241_+|pilus-assembly-protein-PilL
MIRHFTTFSLLAFLASCTTQTTSAPKPAFDSSRNPDMLSPDLYPGGAVPEKEPVVRYGRYTLVSTLPDSGQRDLMAQIIDVNIPANMKPNVRDAMQYVMDRSGYSLCSAGTGHVNILYTRPLPAAQYKLGPMTLRNTLQVLAGPAWQVKVDEVNRQVCYVLRPGYQLPDLPRPVSTLIAKQSLAPHSNTKPAEESDALTGSAVTVAAVPTPPAITTAGSVPPAPALSALTTTPDHSPVKPAKDGSIEKSLPAPAPSPTKIATGPAVSKPATTIAISNAPATTVAPPPKPAPVAQVPLPQIWTAAPGTTLRDSVEDWAKRANWSVIWRAEGLDYPIEAPLRFEGSFQDAVSQIFPLYDGAARPFKVDGNPVQRLIVVVEKK
>NZ_CP008696.1|WP_038634532.1|5266237_5267953_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MKIERQALRAIALGLLAVSLSGCGLKRVDESFQRSEATAGSASDIAANLRNTQAEPKRETVVFSDRPWVNTQPIVSKRGLPPHKDCQFIWKPIGPVTLQQAAQEIISQCNLNVQITPDALNSSFSTAAAQSTPSSAPPSASMNQDMASMLFPSSVTGATGSMGSNFTSFGVGGTRQISNIKWDAKVSGFLDLITSRTGVSWRFDQVENAAVIYYLDTRTFRVYAFDDTTKMDSTVRSGMTTSTGTSGDNSSAGGSTSGISGDSGSNQTSNVSLKTSILNDIESSVKSMLTPSVGRMALSRATGTLTVTDRPEVLRRIEQTIKQENESITTQVILNVKVLSVTLTDIDQMGIDWTLVYKSLSNKWGISLKNVVPGIDPSAISGSVSILDTANSAWAGSSAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGKLKSYLASSQVSNVAQVGSTTSLIPGSVTSGYNMTLLPFVMPENELLLKININMSTDPTFETVTSGESKAQFPSYGVQIFDQKVRLKNGETLVLSGFEQDSEDSTKSGTGDPGFFGLGGGRMRNTERNVIVVLITPVVMH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1183920 : 1293270

111

Pseudomonas_phage(39.66%)

transposase,holin,tRNA,protease,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162098622.1\|1183920_1184736_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	6.6e-08	33.0
WP_009047204.1\|1184835_1185240_-	SufE family protein	NA	NA	NA	NA
WP_038630711.1\|1185236_1186442_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.1e-72	37.7
WP_009047206.1\|1186518_1187553_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_009047207.1\|1187587_1187950_-	ArsC family reductase	NA	NA	NA	NA
WP_016705305.1\|1188176_1189823_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_009047209.1\|1189932_1191132_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_038630713.1\|1191171_1193874_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_009047211.1\|1193921_1194704_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_007924078.1\|1195111_1195852_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_009042383.1\|1196056_1196923_+	elongation factor Ts	NA	NA	NA	NA
WP_007924076.1\|1197131_1197875_+	UMP kinase	NA	NA	NA	NA
WP_009047212.1\|1197871_1198429_+	ribosome recycling factor	NA	NA	NA	NA
WP_009047213.1\|1198445_1199201_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.0e-18	38.8
WP_028681758.1\|1199200_1200007_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_038630715.1\|1200003_1201194_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_009047216.1\|1201247_1202600_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_009047217.1\|1202674_1205062_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_007924063.1\|1205107_1205611_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_009047218.1\|1205614_1206670_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1206779_1207220_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_007924057.1\|1207216_1207993_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_028681759.1\|1207995_1209126_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_016705311.1\|1209137_1209770_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
WP_009047221.1\|1209839_1213364_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
WP_038630718.1\|1213504_1214452_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_038630719.1\|1214571_1215900_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_007924045.1\|1216174_1217806_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
WP_009047224.1\|1217811_1218657_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.2e-49	42.8
WP_009047225.1\|1218814_1220104_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
WP_007924039.1\|1220276_1220555_+	cell division protein FtsB	NA	NA	NA	NA
WP_016705315.1\|1220551_1221259_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_009047227.1\|1221428_1222325_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007924035.1\|1222431_1223544_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
WP_162473255.1\|1223626_1224478_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_007924033.1\|1224530_1225004_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_009047228.1\|1225000_1226059_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_009047229.1\|1226046_1226796_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
WP_009047230.1\|1226795_1227473_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
WP_007924027.1\|1227682_1228516_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
WP_007924026.1\|1228622_1229627_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_009046547.1\|1230155_1231361_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	4.4e-109	53.7
WP_007924025.1\|1231444_1231768_-	ferredoxin family protein	NA	NA	NA	NA
WP_038630722.1\|1231910_1234490_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.5
WP_038630723.1\|1234686_1235412_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
WP_038630724.1\|1235967_1236396_+	hypothetical protein	NA	NA	NA	NA
WP_080577932.1\|1236559_1236748_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.5e-13	82.9
WP_038630725.1\|1236756_1237338_+	DUF642 domain-containing protein	NA	NA	NA	NA
WP_009047293.1\|1237440_1237788_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
WP_038630726.1\|1237954_1238719_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.0e-06	26.3
WP_038630728.1\|1238940_1239465_+	hypothetical protein	NA	NA	NA	NA
WP_038630729.1\|1239468_1240077_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.8e-47	59.0
WP_007924012.1\|1240090_1240423_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
WP_038630730.1\|1240419_1241415_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	6.2e-109	63.5
WP_038630731.1\|1241411_1242047_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	4.4e-44	54.2
WP_038630732.1\|1242047_1243574_+\|tail	tail protein	A0A1I9KF43	Aeromonas_phage	8.7e-30	40.9
WP_038630733.1\|1243584_1244010_+\|tail	phage tail protein	A0A291LAV4	Bordetella_phage	4.1e-30	52.9
WP_038630734.1\|1244102_1244324_+	hypothetical protein	NA	NA	NA	NA
WP_016701993.1\|1244326_1245493_+\|tail	tail protein	B0ZSG8	Halomonas_phage	1.1e-125	57.5
WP_009047304.1\|1245492_1245999_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	4.8e-25	36.3
WP_038630736.1\|1246125_1246707_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	3.1e-28	39.4
WP_038630740.1\|1246835_1249097_+\|tail	phage tail tape measure protein	A0A2H4JAA5	uncultured_Caudovirales_phage	6.3e-08	41.7
WP_028681836.1\|1249096_1249480_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	3.6e-33	53.5
WP_023969822.1\|1249472_1249685_+\|tail	tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	3.9e-21	68.6
WP_009047308.1\|1249694_1250714_+	hypothetical protein	A0A2H4JH05	uncultured_Caudovirales_phage	4.7e-104	56.5
WP_038630742.1\|1250894_1251479_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.4e-75	71.5
WP_007923975.1\|1251475_1251658_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	6.5e-25	93.3
WP_038630744.1\|1251657_1253154_+\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	2.0e-257	91.0
WP_007923973.1\|1253220_1253568_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
WP_007923972.1\|1253564_1253861_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.3e-43	94.9
WP_038636452.1\|1254099_1255746_+	hypothetical protein	B5TK70	Pseudomonas_phage	3.9e-44	54.4
WP_038630746.1\|1255732_1256971_+	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.7e-180	75.5
WP_009047313.1\|1256974_1258015_+	hypothetical protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
WP_009047314.1\|1258132_1258642_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.2e-78	88.8
WP_009047315.1\|1258641_1259040_+	hypothetical protein	B5TK74	Pseudomonas_phage	1.7e-65	89.4
WP_038630748.1\|1259029_1260070_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.0e-167	87.3
WP_009042430.1\|1260057_1260657_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	8.5e-106	91.5
WP_038630750.1\|1260668_1261523_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
WP_038630752.1\|1261527_1262169_+	hypothetical protein	B5TK78	Pseudomonas_phage	6.2e-38	52.5
WP_038630754.1\|1262300_1263221_+	hypothetical protein	B5TK77	Pseudomonas_phage	7.4e-24	61.1
WP_038630756.1\|1263220_1263700_+	hypothetical protein	A0A291LAV4	Bordetella_phage	4.9e-11	51.4
WP_124344844.1\|1263859_1264762_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	2.4e-35	37.6
WP_124301198.1\|1264771_1265242_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	6.6e-21	47.3
WP_080710484.1\|1265313_1266054_+	hypothetical protein	B5TK77	Pseudomonas_phage	2.1e-21	65.8
WP_051673120.1\|1266056_1266488_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	2.2e-23	38.4
WP_023969836.1\|1266533_1267097_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.7e-87	83.3
WP_038630760.1\|1267078_1267615_+	lysozyme	B5TK84	Pseudomonas_phage	6.3e-60	71.3
WP_023969838.1\|1267697_1268198_+	CinA family protein	B5TK85	Pseudomonas_phage	1.0e-72	86.1
WP_007923942.1\|1268281_1269334_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
WP_009047326.1\|1269342_1269810_+	recombination regulator RecX	NA	NA	NA	NA
WP_016702021.1\|1269855_1270971_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_009047328.1\|1271454_1271649_+	hypothetical protein	NA	NA	NA	NA
WP_007923938.1\|1271650_1272073_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_016702022.1\|1272262_1272973_+	DTW domain-containing protein	NA	NA	NA	NA
WP_009047330.1\|1273307_1273958_+	response regulator transcription factor	NA	NA	NA	NA
WP_009047331.1\|1274034_1274397_+	diacylglycerol kinase	NA	NA	NA	NA
WP_009047332.1\|1274393_1275320_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009047333.1\|1275453_1276233_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_038630763.1\|1276305_1277001_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_038630765.1\|1277087_1277858_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_009047336.1\|1277991_1278453_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
WP_009047337.1\|1278519_1279230_-	RNA-binding protein S4	NA	NA	NA	NA
WP_009047338.1\|1279312_1279786_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016702026.1\|1279892_1281230_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_009047341.1\|1281561_1283463_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	4.8e-78	34.8
WP_016702028.1\|1283662_1283938_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_038581682.1\|1284435_1285731_-	virulence factor family protein	NA	NA	NA	NA
WP_009047343.1\|1285730_1288379_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_009047344.1\|1289317_1290382_+	DNA polymerase IV	NA	NA	NA	NA
WP_038630767.1\|1290583_1291537_-	hypothetical protein	NA	NA	NA	NA
WP_038630769.1\|1291554_1293270_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

1459053 : 1504110

uncultured_Caudovirales_phage(60.61%)

head,holin,capsid,terminase,portal,protease,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009047488.1\|1459053_1460481_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	5.9e-28	31.3
WP_007930234.1\|1460557_1461991_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_038630834.1\|1462088_1462328_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_007930236.1\|1462369_1463440_+	AI-2E family transporter	NA	NA	NA	NA
WP_038630836.1\|1463511_1463985_-	peroxiredoxin	NA	NA	NA	NA
WP_007930238.1\|1463996_1464557_-	glycine cleavage system protein R	NA	NA	NA	NA
WP_009047491.1\|1464883_1465762_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_038630838.1\|1465779_1466892_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_009042592.1\|1466896_1467655_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_038630839.1\|1467683_1468394_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	3.0e-41	37.1
WP_038636463.1\|1468778_1470203_-	TIR domain-containing protein	NA	NA	NA	NA
WP_009047494.1\|1470284_1471532_-	DUF3596 domain-containing protein	Q76UT6	Pseudomonas_virus	2.5e-43	42.4
WP_009047495.1\|1471528_1471783_-	hypothetical protein	NA	NA	NA	NA
WP_144241825.1\|1471798_1472017_-	zinc-binding domain-containing protein	Q9ZXI5	Pseudomonas_virus	4.0e-13	61.7
WP_009047497.1\|1472009_1472654_-	hypothetical protein	NA	NA	NA	NA
WP_009047498.1\|1472766_1473096_-	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	1.0e-20	50.5
WP_038630840.1\|1473092_1474898_-	DNA methyltransferase	A0A0U1T6D1	Pseudomonas_phage	2.9e-218	73.3
WP_038636469.1\|1474894_1475107_-	hypothetical protein	NA	NA	NA	NA
WP_038630841.1\|1475145_1475643_-	hypothetical protein	NA	NA	NA	NA
WP_009047502.1\|1475726_1475972_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	5.1e-17	60.0
WP_038630843.1\|1475968_1476478_-	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	1.4e-08	43.0
WP_051673196.1\|1476738_1477398_-	helix-turn-helix domain-containing protein	A0A2H4J8I0	uncultured_Caudovirales_phage	9.0e-40	46.3
WP_038630847.1\|1477494_1477698_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038630849.1\|1477911_1478400_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	1.0e-32	56.2
WP_038630852.1\|1478392_1478596_+	transcriptional regulator	NA	NA	NA	NA
WP_038630854.1\|1478592_1481352_+	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	65.1
WP_162473251.1\|1481348_1481681_+	hypothetical protein	NA	NA	NA	NA
WP_009047508.1\|1482366_1482714_+\|holin	holin	B5TK61	Pseudomonas_phage	4.5e-43	78.7
WP_009047509.1\|1482850_1483372_+	DNA packaging protein	NA	NA	NA	NA
WP_038630855.1\|1483376_1485302_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.1e-166	48.7
WP_009047511.1\|1485314_1485530_+	hypothetical protein	NA	NA	NA	NA
WP_038630857.1\|1485532_1487140_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	2.4e-94	42.9
WP_038630859.1\|1487142_1488363_+	S49 family peptidase	A0A219YB02	Aeromonas_phage	1.0e-49	43.0
WP_038630861.1\|1488375_1488726_+\|head	head decoration protein	NA	NA	NA	NA
WP_038630862.1\|1488737_1489769_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	2.2e-69	41.3
WP_009047516.1\|1489770_1489950_+	hypothetical protein	NA	NA	NA	NA
WP_038630864.1\|1489952_1490273_+	hypothetical protein	NA	NA	NA	NA
WP_038630867.1\|1490269_1490932_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.4e-72	61.0
WP_038630868.1\|1490924_1491458_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.1e-35	46.5
WP_038630869.1\|1491454_1492036_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.3e-55	65.1
WP_009047522.1\|1492079_1492295_+	hypothetical protein	NA	NA	NA	NA
WP_009047523.1\|1492297_1492624_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
WP_038630871.1\|1492620_1493502_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	7.6e-111	70.0
WP_038630873.1\|1493503_1494112_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.4e-79	72.2
WP_080710492.1\|1494104_1495676_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	3.6e-71	54.9
WP_080710634.1\|1495683_1496094_+	hypothetical protein	B5TK82	Pseudomonas_phage	8.9e-30	44.7
WP_038630877.1\|1496192_1497356_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	9.2e-181	81.0
WP_009047528.1\|1497368_1497878_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.3e-65	72.5
WP_009047529.1\|1497905_1498202_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	2.3e-19	56.4
WP_038630879.1\|1498333_1500874_+\|tail	tail protein	A0A2H4JG00	uncultured_Caudovirales_phage	7.9e-68	33.8
WP_038630881.1\|1500883_1501729_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	6.0e-89	58.6
WP_038630884.1\|1501703_1501910_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.5e-20	68.7
WP_038630885.1\|1501967_1503020_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.9e-148	74.9
WP_038630887.1\|1503043_1503595_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.9e-68	71.6
WP_038630889.1\|1503591_1504110_+	lysozyme	A0A2H4JBH9	uncultured_Caudovirales_phage	2.2e-33	54.7

DBSCAN-SWA_3

3323095 : 3389221

Burkholderia_phage(34.15%)

transposase,capsid,integrase,tail,plate

attL 3313131:3313146|attR 3367770:3367785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3313131:3313146	attL	NA	NA	NA	NA
WP_038632419.1\|3323095_3324349_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_080710641.1\|3325092_3325881_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_038632423.1\|3325867_3327982_+	hypothetical protein	NA	NA	NA	NA
WP_038632428.1\|3328490_3328940_-	hypothetical protein	A0A2H4J163	uncultured_Caudovirales_phage	3.6e-08	28.5
WP_038632430.1\|3329025_3329307_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_051673138.1\|3330779_3331100_+	HNH endonuclease	NA	NA	NA	NA
WP_038632431.1\|3331415_3332285_+	hypothetical protein	NA	NA	NA	NA
WP_038632432.1\|3332903_3333524_+	hypothetical protein	NA	NA	NA	NA
WP_038632433.1\|3333516_3334635_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.9e-30	27.3
WP_051673139.1\|3334722_3335706_+	hypothetical protein	NA	NA	NA	NA
WP_038632434.1\|3336388_3337393_-	hypothetical protein	NA	NA	NA	NA
WP_080710545.1\|3337385_3338063_-	hypothetical protein	NA	NA	NA	NA
WP_080710546.1\|3338386_3340048_-	hypothetical protein	NA	NA	NA	NA
WP_144241832.1\|3340550_3341390_-	hypothetical protein	NA	NA	NA	NA
WP_158484752.1\|3341386_3343039_-	AAA family ATPase	NA	NA	NA	NA
WP_080710549.1\|3343470_3344151_-	hypothetical protein	NA	NA	NA	NA
WP_038632440.1\|3344143_3345097_-	30S ribosomal protein S6 modification protein RimK	S5VKI3	Leptospira_phage	3.2e-46	34.9
WP_080710642.1\|3345111_3345441_-	hypothetical protein	NA	NA	NA	NA
WP_158484754.1\|3346015_3346504_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_038632444.1\|3346553_3348350_-	DUF4209 domain-containing protein	NA	NA	NA	NA
WP_009049073.1\|3349522_3350485_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144241833.1\|3351503_3351869_+	hypothetical protein	NA	NA	NA	NA
WP_028684112.1\|3352447_3352819_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.1e-17	45.8
WP_080684230.1\|3352815_3353268_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	9.8e-30	55.9
WP_038632446.1\|3353264_3353483_-	hypothetical protein	NA	NA	NA	NA
WP_051673143.1\|3353484_3353874_-	DUF2528 family protein	A0A1I9LJN3	Stx_converting_phage	2.0e-07	32.5
WP_038632448.1\|3353875_3354493_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	5.3e-42	38.1
WP_144241835.1\|3354485_3354716_-	hypothetical protein	NA	NA	NA	NA
WP_038632449.1\|3354712_3355030_-	hypothetical protein	J9SNT1	Pseudomonas_phage	1.9e-11	41.6
WP_038632450.1\|3355031_3356213_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	3.2e-128	62.4
WP_038632452.1\|3356212_3357988_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	1.3e-194	59.7
WP_038632454.1\|3357991_3358927_-	hypothetical protein	J9SND0	Pseudomonas_phage	1.6e-66	49.0
WP_028684121.1\|3358937_3359240_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	1.7e-25	64.9
WP_038632456.1\|3359236_3359716_-	hypothetical protein	Q6QID6	Burkholderia_phage	8.5e-56	65.2
WP_038632458.1\|3360107_3360320_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	4.2e-23	76.8
WP_038632459.1\|3360405_3360822_+	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-26	55.8
WP_028684125.1\|3360825_3361416_+	hypothetical protein	NA	NA	NA	NA
WP_144241836.1\|3361430_3361835_+	hypothetical protein	NA	NA	NA	NA
WP_038632460.1\|3361840_3362224_+	hypothetical protein	NA	NA	NA	NA
WP_038632461.1\|3362361_3362829_+	structural protein	J9Q7Y7	Salmonella_phage	5.9e-38	54.0
WP_038632462.1\|3362825_3363065_+	hypothetical protein	NA	NA	NA	NA
WP_038632463.1\|3363260_3363860_+	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	5.8e-38	49.5
WP_038632464.1\|3363866_3364085_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_038632465.1\|3364081_3364387_+	hypothetical protein	J9STR5	Pseudomonas_phage	1.0e-14	42.7
WP_028684132.1\|3364383_3364677_+	hypothetical protein	J9SNG3	Pseudomonas_phage	1.2e-23	61.2
WP_028684133.1\|3364678_3365227_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	2.5e-27	45.3
WP_038632466.1\|3365223_3366843_+	phage protein	A0A219VH72	Ochrobactrum_phage	8.8e-113	44.8
WP_038632467.1\|3366839_3368333_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	1.5e-162	58.9
3367770:3367785	attR	NA	NA	NA	NA
WP_038632468.1\|3368332_3369169_+\|capsid	minor capsid protein	A0A1C6ZDL9	Pseudomonas_phage	1.9e-87	61.4
WP_038632470.1\|3369179_3369656_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	8.8e-21	40.7
WP_038632474.1\|3369891_3371004_+	hypothetical protein	A4JWJ9	Burkholderia_virus	3.6e-89	47.2
WP_038632476.1\|3371016_3371940_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.9e-80	49.0
WP_144241837.1\|3371947_3372412_+	hypothetical protein	NA	NA	NA	NA
WP_038632478.1\|3372408_3372741_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	7.7e-24	57.3
WP_038632481.1\|3372749_3373181_+	DUF1320 domain-containing protein	Q6QIB3	Burkholderia_phage	6.2e-42	56.7
WP_038632483.1\|3373180_3373663_+	hypothetical protein	NA	NA	NA	NA
WP_038632485.1\|3373659_3373893_+	hypothetical protein	NA	NA	NA	NA
WP_038632486.1\|3373898_3375323_+\|tail	tail protein	A4JWK5	Burkholderia_virus	1.9e-175	64.1
WP_038632488.1\|3375323_3375848_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	1.0e-46	50.6
WP_144241838.1\|3375917_3376205_-	hypothetical protein	NA	NA	NA	NA
WP_038632490.1\|3376347_3376662_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_038632494.1\|3376847_3379433_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-137	37.9
WP_038632496.1\|3379432_3380314_+\|tail	phage tail protein	A0A067ZI88	Vibrio_phage	5.4e-08	34.9
WP_028684150.1\|3380313_3380520_+	membrane protein	Q6QIA3	Burkholderia_phage	2.1e-16	61.4
WP_038632498.1\|3380507_3381623_+	late control protein D	Q6QIA2	Burkholderia_phage	2.4e-61	37.8
WP_038632500.1\|3381622_3382174_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_158484756.1\|3382174_3382813_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	4.5e-28	31.8
WP_038632504.1\|3382921_3383299_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.9e-31	56.0
WP_038632506.1\|3383282_3384404_+\|plate	baseplate protein	A4JWL6	Burkholderia_virus	4.4e-87	48.2
WP_038632509.1\|3384396_3384978_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	8.4e-50	55.2
WP_144241839.1\|3384977_3386072_+	hypothetical protein	A4JWL8	Burkholderia_virus	4.2e-18	29.5
WP_038632510.1\|3386073_3386490_+	hypothetical protein	B5TK82	Pseudomonas_phage	4.3e-32	48.2
WP_038632511.1\|3387100_3389221_+	elongation factor G	A0A1S5SF82	Streptococcus_phage	1.2e-50	24.4

DBSCAN-SWA_4

3755617 : 3823473

Pseudomonas_phage(47.92%)

integrase,capsid,holin,tail

attL 3749952:3749968|attR 3805553:3805569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3749952:3749968	attL	NA	NA	NA	NA
WP_038632844.1\|3755617_3756556_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_038632847.1\|3756735_3757770_+	DNA-binding protein	NA	NA	NA	NA
WP_038632849.1\|3757766_3759125_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	3.4e-49	28.5
WP_009049342.1\|3759256_3760096_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.9e-64	46.8
WP_016702449.1\|3760389_3760578_+	hypothetical protein	NA	NA	NA	NA
WP_007921741.1\|3760733_3761015_+	hypothetical protein	NA	NA	NA	NA
WP_007921740.1\|3761027_3761258_-	hypothetical protein	NA	NA	NA	NA
WP_038632853.1\|3761326_3762250_-	c-type cytochrome	NA	NA	NA	NA
WP_038636667.1\|3762246_3762918_-	cytochrome c4	NA	NA	NA	NA
WP_009049346.1\|3763102_3763453_-	hypothetical protein	NA	NA	NA	NA
WP_007921735.1\|3763629_3763932_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_038632856.1\|3764239_3764956_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_038632859.1\|3764945_3765620_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_028682528.1\|3765707_3766781_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	6.0e-17	51.1
WP_038632860.1\|3766744_3767233_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_038632862.1\|3767282_3768266_-	oxidoreductase	NA	NA	NA	NA
WP_038632865.1\|3768584_3769649_+	nitronate monooxygenase	NA	NA	NA	NA
WP_038632868.1\|3769822_3770590_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009049354.1\|3770590_3771271_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_038632869.1\|3771274_3772363_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-22	32.7
WP_016702438.1\|3772632_3774273_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.2e-23	24.7
WP_009049357.1\|3774343_3774553_+	hypothetical protein	NA	NA	NA	NA
WP_038632873.1\|3774797_3775118_-	YbjQ family protein	NA	NA	NA	NA
WP_009049359.1\|3775328_3775655_+	isochorismate lyase	NA	NA	NA	NA
WP_016704205.1\|3775718_3775919_-	hypothetical protein	NA	NA	NA	NA
WP_009049361.1\|3776033_3776237_-	hypothetical protein	NA	NA	NA	NA
WP_009049362.1\|3776643_3777003_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_038632876.1\|3777451_3777964_-	fimbrial protein	NA	NA	NA	NA
WP_009049364.1\|3778388_3778820_-	hypothetical protein	NA	NA	NA	NA
WP_080710560.1\|3778935_3779409_+	hypothetical protein	NA	NA	NA	NA
WP_016703118.1\|3779874_3780282_-	hypothetical protein	NA	NA	NA	NA
WP_115344067.1\|3780429_3780618_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038632879.1\|3780538_3780856_+	hypothetical protein	NA	NA	NA	NA
WP_009049368.1\|3781157_3781487_+	hypothetical protein	NA	NA	NA	NA
WP_080710562.1\|3781657_3782086_+	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	1.0e-20	34.8
WP_038632885.1\|3782189_3782576_-	DUF5329 domain-containing protein	NA	NA	NA	NA
WP_038632888.1\|3782645_3783101_-	hypothetical protein	NA	NA	NA	NA
WP_080710644.1\|3783206_3783584_+	hypothetical protein	NA	NA	NA	NA
WP_009049373.1\|3784241_3784478_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_038632894.1\|3784902_3785196_-	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	4.7e-25	51.5
WP_038632898.1\|3785325_3786033_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	1.8e-94	71.4
WP_038632901.1\|3786042_3786561_-	lysozyme	B5TK84	Pseudomonas_phage	4.4e-50	65.3
WP_038632904.1\|3786560_3786986_-	cell wall hydrolase	A0A1B0VMI2	Pseudomonas_phage	1.7e-68	85.8
WP_038636671.1\|3787044_3787404_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	2.0e-33	60.5
WP_038632907.1\|3787751_3788525_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	4.4e-30	36.2
WP_038632910.1\|3788589_3789270_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	6.8e-43	41.1
WP_080710564.1\|3789269_3789593_-	hypothetical protein	NA	NA	NA	NA
WP_038632913.1\|3789589_3793048_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	56.5
WP_038632916.1\|3793108_3793702_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	1.4e-63	66.0
WP_038632919.1\|3793759_3794104_-	hypothetical protein	A0A1B0VMC6	Pseudomonas_phage	2.7e-19	51.6
WP_038632922.1\|3794137_3794893_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	7.7e-128	81.7
WP_038632925.1\|3794895_3795645_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	3.1e-121	78.7
WP_038632929.1\|3795654_3795993_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	1.9e-46	75.0
WP_038632932.1\|3796040_3796256_+	hypothetical protein	NA	NA	NA	NA
WP_038632935.1\|3796256_3799274_-\|tail	phage tail tape measure protein	A0A2H4JA74	uncultured_Caudovirales_phage	2.9e-162	44.2
WP_080710567.1\|3799301_3799562_-	DUF1799 domain-containing protein	A0A1B0VMG9	Pseudomonas_phage	1.8e-15	51.2
WP_028682498.1\|3799624_3800008_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	3.4e-31	54.3
WP_028682497.1\|3800017_3800671_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	9.4e-90	78.7
WP_038632941.1\|3800741_3801158_-	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	6.2e-47	67.4
WP_038632945.1\|3801154_3801751_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	1.1e-52	52.3
WP_038632947.1\|3801747_3802116_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	1.3e-48	80.8
WP_038632950.1\|3802132_3802636_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	8.8e-80	89.2
WP_038632953.1\|3802692_3803280_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	6.1e-16	40.4
WP_038578388.1\|3803329_3804298_-	hypothetical protein	R9TJ64	Synechococcus_phage	2.6e-112	65.4
WP_038632955.1\|3804309_3805017_-	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	1.1e-30	45.7
WP_144241843.1\|3805127_3805412_-	hypothetical protein	NA	NA	NA	NA
WP_038632961.1\|3805467_3806556_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	1.4e-151	75.3
3805553:3805569	attR	NA	NA	NA	NA
WP_038632964.1\|3806530_3807991_-	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	3.1e-173	62.6
WP_038632966.1\|3807990_3809478_-	hypothetical protein	A0A2H4J2I1	uncultured_Caudovirales_phage	1.1e-263	87.4
WP_038632968.1\|3809479_3810079_-	phage-like protein	A0A2H4J2I6	uncultured_Caudovirales_phage	1.1e-23	42.5
WP_038632971.1\|3810134_3810605_-	hypothetical protein	NA	NA	NA	NA
WP_038632974.1\|3810642_3810894_-	hypothetical protein	NA	NA	NA	NA
WP_038632977.1\|3810890_3811079_-	hypothetical protein	A0A0H5ARJ1	Pseudomonas_phage	8.5e-12	59.3
WP_038632983.1\|3811341_3811638_-	hypothetical protein	V5K3F8	Pseudomonas_phage	5.1e-11	35.0
WP_038632986.1\|3811641_3811926_-\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	4.7e-22	57.0
WP_038632989.1\|3811918_3812293_-	membrane protein	A0A0S2SYH4	Pseudomonas_phage	6.4e-35	62.8
WP_038632992.1\|3812319_3812826_-	hypothetical protein	NA	NA	NA	NA
WP_038632995.1\|3813178_3813874_-	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	5.5e-64	57.6
WP_038632998.1\|3813870_3814452_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	1.9e-78	70.5
WP_038633001.1\|3814448_3815036_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.2e-91	80.5
WP_038633004.1\|3815028_3815238_-	hypothetical protein	NA	NA	NA	NA
WP_038633007.1\|3815916_3816711_-	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	3.0e-90	61.0
WP_080710645.1\|3817482_3818190_-	phage antirepressor protein	A0A2D1GNK4	Pseudomonas_phage	6.9e-38	55.5
WP_038633014.1\|3818336_3818759_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	2.6e-32	49.3
WP_025804620.1\|3818841_3819057_-	transcriptional regulator	A0A125RNS7	Pseudomonas_phage	1.4e-23	71.8
WP_038633017.1\|3819144_3819810_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	1.5e-47	48.6
WP_038633020.1\|3819810_3820014_+	hypothetical protein	NA	NA	NA	NA
WP_038633023.1\|3820424_3821396_+	hypothetical protein	A9YX09	Burkholderia_phage	4.8e-74	48.6
WP_038633025.1\|3821547_3822027_+	hypothetical protein	NA	NA	NA	NA
WP_038633027.1\|3822192_3822444_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_038633029.1\|3822885_3823140_+	hypothetical protein	NA	NA	NA	NA
WP_038633031.1\|3823200_3823473_+	hypothetical protein	A0A2I7RQ39	Vibrio_phage	3.8e-13	49.3

DBSCAN-SWA_5

4288696 : 4294955

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009049761.1\|4288696_4289089_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.7e-59	84.6
WP_009049762.1\|4289092_4289455_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
WP_009049763.1\|4289454_4289754_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
WP_016701877.1\|4289750_4290086_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
WP_038633620.1\|4290082_4291084_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-164	84.1
WP_038633623.1\|4291173_4292181_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_038633625.1\|4292279_4293674_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_009049768.1\|4293674_4294955_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

DBSCAN-SWA_6

6952658 : 7007376

Burkholderia_phage(25.0%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016704223.1\|6952658_6954362_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.7e-51	30.1
WP_016704222.1\|6954529_6956002_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_009051253.1\|6956115_6956709_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_038636167.1\|6957133_6959131_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	8.2e-20	28.3
WP_038636170.1\|6959413_6960592_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.5e-26	37.6
WP_007925985.1\|6960588_6961434_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_009051250.1\|6961504_6962461_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009051249.1\|6962887_6964264_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_009045963.1\|6964835_6965930_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_038636173.1\|6965930_6966377_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007925996.1\|6966439_6966700_-	hypothetical protein	NA	NA	NA	NA
WP_038636176.1\|6967057_6968221_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_009051245.1\|6968386_6968863_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_038636178.1\|6969011_6969977_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_009051243.1\|6970175_6971063_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_016704214.1\|6971136_6972081_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016704212.1\|6972274_6973222_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_038636180.1\|6973320_6973737_-	DUF3010 family protein	NA	NA	NA	NA
WP_050899134.1\|6973770_6974139_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.0e-32	70.1
WP_009051238.1\|6974077_6974332_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.7e-23	64.3
WP_009051237.1\|6974562_6974964_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_007926352.1\|6975191_6976169_+	membrane dipeptidase	NA	NA	NA	NA
WP_003228980.1\|6976331_6976862_+	hypothetical protein	NA	NA	NA	NA
WP_009051236.1\|6976877_6978938_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_038636183.1\|6979101_6981051_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_038636186.1\|6981050_6982271_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_038636189.1\|6982286_6983057_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_009051232.1\|6983899_6985195_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_023969192.1\|6985477_6986578_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_038636192.1\|6987577_6988402_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_038636195.1\|6988539_6989364_-	carbon-nitrogen hydrolase	M1HUK8	Acanthocystis_turfacea_Chlorella_virus	2.3e-21	34.6
WP_038575204.1\|6989360_6990806_-	cytosine permease	NA	NA	NA	NA
WP_009051226.1\|6990974_6992015_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_038636198.1\|6992239_6992983_+	conjugal transfer protein TraX	NA	NA	NA	NA
WP_038575206.1\|6993430_6994684_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.9e-99	53.0
WP_009051223.1\|6994707_6995958_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_009051222.1\|6996114_6996444_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_038636201.1\|6996440_6999458_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_009051220.1\|6999614_7000247_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_009051219.1\|7000407_7001265_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009045939.1\|7001402_7002602_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	29.3
WP_038636204.1\|7002664_7003231_-	hypothetical protein	NA	NA	NA	NA
WP_080710629.1\|7003227_7004181_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_124337454.1\|7004190_7004445_-	hypothetical protein	NA	NA	NA	NA
WP_009051218.1\|7005089_7005662_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_009051217.1\|7005662_7006550_-	acyltransferase	NA	NA	NA	NA
WP_009051216.1\|7006875_7007376_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008696

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection