CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007209	Staphylococcus xylosus strain HKUOPL8 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP007208	Staphylococcus xylosus strain HKUOPL8 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007208_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007208_1

1308386-1308472

Orphan

Consensus_repeat	Method
TTTTATGTGATTTATTTCACAAATTAAATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007208_1

>merge|NZ_CP007208|1|1308386-1308472|CRISPRCasFinder
TTTTATGTGATTTATTTCACAAATTAAATATAACAGGGTCTATAAAAAATTGCAATGTTTTTGTGATTTATTTCACAAATTAAATAT

>NZ_CP007208|1|1|1308386-1308472|CRISPRCasFinder
TTTTATGTGATTTATTTCACAAATTAAATAT	AACAGGGTCTATAAAAAATTGCAAT
GTTTTTGTGATTTATTTCACAAATTAAATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007208.1\|WP_029377012.1\|1296185_1296599_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP007208.1\|WP_029377003.1\|1307401_1308358_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP007208.1\|WP_029377007.1\|1301031_1303446_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP007208.1\|WP_029376994.1\|1317758_1318613_-\|autolysin	unknown	unknown	gnl\|CDD\|226656
NZ_CP007208.1\|WP_029376999.1\|1311338_1312520_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP007208.1\|WP_029376995.1\|1316410_1317337_+\|osmoprotectant-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270326
NZ_CP007208.1\|WP_029377000.1\|1310866_1311325_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP007208.1\|WP_038678746.1\|1308576_1309401_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP007208.1\|WP_017722196.1\|1318777_1319002_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007208.1\|WP_029377004.1\|1306849_1307251_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP007208.1\|WP_038678742.1\|1300700_1301012_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP007208.1\|WP_029376997.1\|1313169_1314213_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP007208.1\|WP_029376998.1\|1312530_1313163_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP007208.1\|WP_038678744.1\|1303964_1305134_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP007208.1\|WP_017722183.1\|1305243_1306197_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP007208.1\|WP_038678748.1\|1314776_1316240_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|226906
NZ_CP007208.1\|WP_029377010.1\|1297312_1298950_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP007208.1\|WP_029377011.1\|1296617_1297316_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP007208.1\|WP_029377001.1\|1309667_1310669_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580
NZ_CP007208.1\|WP_029377005.1\|1306193_1306754_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744

Protein	Function_ID	Function_description	E-value
NZ_CP007208.1\|WP_029377012.1\|1296185_1296599_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	1.58928e-05
NZ_CP007208.1\|WP_029377003.1\|1307401_1308358_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	2.84195e-180
NZ_CP007208.1\|WP_029377007.1\|1301031_1303446_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP007208.1\|WP_029376994.1\|1317758_1318613_-\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	8.1549e-103
NZ_CP007208.1\|WP_029376999.1\|1311338_1312520_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP007208.1\|WP_029376995.1\|1316410_1317337_+\|osmoprotectant-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270326	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic substrate-binding protein OpuCC of the ABC transporter OpuC (where Opu is osmoprotectant uptake), which can recognize a broad spectrum of compatible solutes, and its paralog OpuBC that can solely bind choline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42501e-154
NZ_CP007208.1\|WP_029377000.1\|1310866_1311325_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	3.84783e-89
NZ_CP007208.1\|WP_038678746.1\|1308576_1309401_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.50782e-65
NZ_CP007208.1\|WP_029377004.1\|1306849_1307251_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	4.64171e-17
NZ_CP007208.1\|WP_038678742.1\|1300700_1301012_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.82658e-23
NZ_CP007208.1\|WP_029376997.1\|1313169_1314213_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.02845e-94
NZ_CP007208.1\|WP_029376998.1\|1312530_1313163_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.58977e-92
NZ_CP007208.1\|WP_038678744.1\|1303964_1305134_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.23752e-83
NZ_CP007208.1\|WP_017722183.1\|1305243_1306197_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP007208.1\|WP_038678748.1\|1314776_1316240_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	9.95773e-78
NZ_CP007208.1\|WP_029377010.1\|1297312_1298950_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.70418e-119
NZ_CP007208.1\|WP_029377011.1\|1296617_1297316_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.37389e-90
NZ_CP007208.1\|WP_029377001.1\|1309667_1310669_+\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	4.90906e-63
NZ_CP007208.1\|WP_029377005.1\|1306193_1306754_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	1.81746e-68

>NZ_CP007208.1|WP_029377003.1|1307401_1308358_-|L-lactate-dehydrogenase
MEYIKSNKVVLIGDGAVGSSYAFALVAQGVADELVIIDLAEEKVKGDVMDLNHAAPYGGSPIKIKAGSYKDCDNADIVVITAGAAQKPGETRLDLIEKNTKIFKNIVSEVMNSGFDGIFLVATNPVDVLTYVTREVSGLPKEKVIGSGTILDTARFKYELAEEFGVSDRSVHGQIIGEHGDSELAVWSQANIAGQPLYQLLKDDPERQHRIEEIFVNTRDAAYDIIQAKGATYYGIAMGLVHITKAILNNQNLVLTVSSYLEGEYDQKGVYVGVPTKINRQGAVKVFEIPLSEEEEKLFNNSVNILKEMQNKISHLIA
>NZ_CP007208.1|WP_029377004.1|1306849_1307251_-|MarR-family-transcriptional-regulator
MGKTFADKVDGVLQLESVLKEIDDIFAKVQKQYKMSKEEILILLTLWKEGSMTLKEMDDFVHIKSYKRTRTYNDLVEKTWIIKERPQNDERTVIIHFNEDLKDQRESLLNFFKEEIDGKSTSIQNSLKSIINL
>NZ_CP007208.1|WP_029377005.1|1306193_1306754_+|methyltransferase-domain-containing-protein
MKLERILPFAKSLIKQHTHEESTVIDATCGNGNDTLFLAQHVTSGHVHAFDIQEAAILNTQQKTKDFDNVTLHHASHSEVKKYIPTESHGTVDAAIFNLGYLPKGDKSVVTLPNSTIAAIEAIFDILSAEGIIILVIYPGHEEGKIERDAVINYLKNFDQNKAHILQYQFINQQNDPPFICAIEKR
>NZ_CP007208.1|WP_017722183.1|1305243_1306197_+|TIGR01212-family-radical-SAM-protein
MGQFFPYAFENKRYHTWNYHLKNKFGQKIFKVAIDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRVDPIEVQFRQIKDRMHEKWHDGQYIAYFQAFTNTHAPVEVLREKYETALKEPGVVGLSIGTRPDCLPDDVVEYLAELNERTYLWVELGLQTIHQETSDLINRAHDMETYYEGIAKLRKHNINICTHIINGLPGEDYNMMMETAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGMLEFMSQEEYTNLVCDQLEIIPKEMIVHRITGDGPIDLMVGPMWSVNKWEVLNEIDNELARRASYQGKFFESTVKS
>NZ_CP007208.1|WP_038678744.1|1303964_1305134_-|MFS-transporter
MNMPKSVWWLVIGMALNITGSSFLWPLNTIYMNEQLDKSLTMAGLVLMINSFGMVIGNLLGGNLFDKLGGYRTIMIGTVICLMSTTLLNFYHGWPWYAVWLVALGFGGGMIIPAIYALAGAVWPKGGRQTFNAIYLAQNLGVAIGAASGGFVAELSFNYIFIANLLMYVAFAIVAVTQFNIKLDVKVKSNDAMSLLSKAYRPQFIALSLLCVMFSICWVAYIQWESTIASFTQEINVSMSQYSLLWTVNGIMILVAQPLISPVVRLLKGNLKYQMLVGIIIFILSFFVTSFAEQFSVFMVGMIILTLGEMFVWPAVPTIANQLAPSGKEGSFQGYVNSAATVGKAFGPLIGGVVVDTFNMQAMFLSMIFLLVIALIFLMIYDKKLSKEI
>NZ_CP007208.1|WP_029377007.1|1301031_1303446_-|leucine--tRNA-ligase
MNYNHNEIEKKWQDYWEEYKTFKTSDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKENIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVVDGVSERGGHPVYRRPMKQWVLKITEYADRLLEDLDDLDWPESLKDMQRNWIGRSEGASVTFEVANLNEEIEVFTTRADTIYGASFLVLSPEHELVNKITTEDKREAIEAYQKEAAKKSDLERTGLSKEKSGVFTGAYAINPLSGEEVPVWIADYVLSTYGTGAVMAVPSGDQRDYEFAKAFDLPIIEVIEGGDMTQEAFTGDGPHINSGELNGLYNEAAIEKAVELLENKNAGSRKVNYKLRDWLFSRQRYWGEPIPVIHWEDGSMTTVPEDELPLLLPETDEIKPSGTGESPLANIDEFVNVVDEATGMKGRRETNTMPQWAGSCWYYLRYIDPNNDKMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLFDLGVVPTKEPFQKLYNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSENGLDGSRRFLDRIWRLLVTENDLISSKVVNTNSKALDKSYHQTVKKVTEDYNSLNFNTAISQLMVFINDCYKAEEIYKPYIEGFIKMLAPIAPHISEELWARLGHEETITYQPWPSYDESLLVDDEIEIVIQVNGKVRAKVNMPKDISKEAMEEVALGNENVKSEIAGKDIKKVIAVPKKLVNIVAK
>NZ_CP007208.1|WP_038678742.1|1300700_1301012_-|rhodanese-like-domain-containing-protein
MESITIDELKSEILDANPVNIIDVRTDEETAMGIIPGAKTIPMNKIPENLNQFNENDTYYIICKVGGRSAQVVQYLEQNGVNAVNVEGGMDAWGDEGLELKSV
>NZ_CP007208.1|WP_029377010.1|1297312_1298950_-|polysaccharide-biosynthesis-protein
MSESKELVRGTFLITLSILITKVLGVIYIIPFYSIIGGEEKLAPFNYAYTPYNIAIAIATAGVPLAASKYVSKYNALGAYKVSEKLYKSSFIVMTITGFIGFFILYLLAPSIASITLAHESGAKGGWSVDDITWIIRIISMVVIFIPLLATWRGVFQGYKSMGPTAVSEVIEQIARILFILIGSYLVLNVFNGSVLQANGVATFAAAIGAVAGIFTLWYYWRKRKPNIEKMVATDVSGISVSYGKMYKEIISYSIPFVIVSLNFPLFNLVDQFTHNGALDLAGVPSRLHDYFFTILNMTTNKIVMIPTSLSAGFAVSLIPFITKTYESGELSEMHRQIRTSLGVLMYITVPASLGIMALALPLYTVFYSYNVDGSQLLFYYAPVAILIGLLSVTASMLQGIDKQKLTVFVILSAVVLKVILNTPLIMAFHTAGAILSTAIALLFAVLCNFYILKKYAKFDFSETWLHFGKIFLYGLIMMIVVELSSFILQMMISPESKIGSLAILIISVVIGMIIYGSITMKTKLADQFLGEMPNKLRRKLGIIK
>NZ_CP007208.1|WP_029377011.1|1296617_1297316_-|rRNA-pseudouridine-synthase
MRLDKFLANMGVGTRTEVKQLLKKKQVTVNDNIETSPKRQLNPDVDVVTVNDTRIQYIDKVYLMLNKPKGYISATEDDKQQTVIDLVDEYKYLNVFPVGRLDKDTEGLLLITNDGQFNHDLMSPTKHVPKTYEVVSEKNITKNDINAFKVGIELNEGFAKPAELMKSDEMYKSFVTIHEGRYHQVKRMFHAINNEVIELKRISIGDLHLDLTLAPGEYRHLNQQDFKSLGLK
>NZ_CP007208.1|WP_029377012.1|1296185_1296599_-|YtxH-domain-containing-protein
MSKLFKAIVGIGGAAAAVVLSKKENRDRLKDEYSKYKSNPESYKQNAKDIASQISSKAGETYNEVKQDPKGYASKVKQDPKGFINEQKGRFKNASENEEEHIEEARFTDEGAADPSNNLRVVTEEELKNNSNKRDEK
>NZ_CP007208.1|WP_038678746.1|1308576_1309401_-|alpha/beta-hydrolase
MWKWETENEAKGIVVIAHNMLEHTGRYAYVITMLRRNGYHVIMGDLPGQGQTSRSNKGQIDNFDVYHEHILEWIRIANEYKLPTYVLGVGLGGLIVLNMLEKVEVPIEGLMLLSPLLEFKKSNKTRKDKIISNIGKIAKDTRFKVGITVEDLTRNSEVIDETNNDQLMLQKVTYHWYKQIIEIMKETVNHLKDVKSLPLLLMYGTEDKVVDVTAMDLIKEKIITEELYFKAWDGLYHEIHNEPERDEVMRYILAFLNNSSSNNGFIVHDENEVS
>NZ_CP007208.1|WP_029377001.1|1309667_1310669_+|proline-dehydrogenase
MPIVKNFFIGLSNNPLLNKTAKEIGPMLGANKVVAGNTITALVDTIERLNNKGITVTVDCLGEFVLTEGEAIQAKDQIIEVMYAIYNHNLDGHMSIKLSQLGSEFDTDLAYRNLREILLKANEFDNMHINIDTEKYDSLFDITQVLDRLKGEFKNVGTVIQAYLYKADALIDKYPELRLRMVKGAYKESDTIAYQTKEEIDKNYIRLMEKRLLNSKNVTSIATHDDEIIRHMKQFIKDNNIERSQYEFQMLYGFRTDLAEKIAGEGNNFCIYVPYGDDWFSYFMRRLAERPQNLNLMFKEFMKPDILKKVGIVSGAIASFALATTFLYRIFKK
>NZ_CP007208.1|WP_029377000.1|1310866_1311325_-|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLIGSDLKVAIVVSRFNDFITNRLLDGAKDTLIRHEVPEENIDVAYVPGAFEIPLVAKKLAEKSDYDAVITLGCVIRGSTSHYDYVCNEVAKGISKANDVTDTPVIFGILTTENIEQAVERAGTKAGNKGSEAAVSAIEMANLLKEI
>NZ_CP007208.1|WP_029376999.1|1311338_1312520_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MQLDSIDKALTALKNGDSIIVVDDENRENEGDLVAVTEWMHNDTVNFMATYGRGLICAPISSDIAKKLDLNPMVSNNSDVYGTQFTVSIDHVDTTTGISADERMLTARALIDDRVSAADFNKPGHLFPLIAQDNGVLTRRGHTEASVDLAKLTGAKPAALICEIMNDDGTMAKGESLEMFKETHGLVMISIEDLEKYRKSAISKLEAKAKVKMPTEYGVFDMYGFTTSDSDEEIVAIVNGDIKQTENVRIHSACLTGDIFHSQRCDCGEQLEASMKYINEHGGIILYLPQEGRGIGLINKLKAYELIEQGYDTVTANIALGFEEDLRNYENAARILKYFGVESVNLLSNNPKKFESLENYGIDITKRIELVVPTNKYNQDYMDTKKEKMGHLI
>NZ_CP007208.1|WP_029376998.1|1312530_1313163_-|riboflavin-synthase
MFTGIVEEIGTIKKVSTQQSVVNLKIECRTILSDMHIGDSISVNGACLTVVEFDHQSFSVQVIKGTENKTYLNQLTQSAEVNLERAMSGQGRFGGHFVLGHVDEVAKITRIQASDNSKIVTIKPTTKLIKQMVSQGSITVDGVSLTIFQLKEAEFDIHLIPETRKSTILNQKRVGDPVHIETDMLFKYVERIINSNESELSPEKLRAFGF
>NZ_CP007208.1|WP_029376997.1|1313169_1314213_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSHYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNARGGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAVKDTTLPSEGDDILEQAGIEVIFRPQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLRHKHDAVLTGRGTIYADNPQYTTRIEEGKHPIKVILSKTGEIDFNLDIFQLRNEPIWIYTQNKNLKTNIEHVEIIELTDCSIKNILKDLYQRGIGSVLVEAGPTVTSEFLQSKFTNELILYYAPKIIGGSGNYQFFQSESIFNLSEVPQFEIVNSQMLEQNIKLELRKK
>NZ_CP007208.1|WP_038678748.1|1314776_1316240_-|pyridine-nucleotide-disulfide-oxidoreductase
MRIAIIGMGTAGVTLLKELVKSDSFSKMNIDVYDNPINMGQGVPFQNDSAELLINLPAAQMSLNLDNHREFYEWYEKQSTFKFSNPEYLPRFIFGHYMKDYLQKFNHKYGNINIIKEEVNEVFIESEIGKTKVTYCVCTSKEIEKCKKYDVVFLTIGTLSYHDPYGLKGIRGYIKTPYPTYNTLDDVQDSDEIAIIGTGLASLDVIRYVTSHHPKLPITVASRKGRLPTVRGEMPDIDFKYITPEKFNEIKRKHFGNVPLDEVIKLFLKDCALHNIDVETLVHRSQDDPIKDLTYDLEHADELGKLQSILELTKENLNWIWNSLSREDQKRFLTNYQPILKENSNPMPPQTARLLIDHINHGTIKIKSELEDVRYNNNKFNFKYKDASVEQFDIVINATGSKTQLADLDGDDQLVLNLENRQVVQAHPLGGIQIVAETNQIISPRYGTLKHMYALGQLTNGINQSRNGVMMIVKQAVNVVDHLLSTK
>NZ_CP007208.1|WP_029376995.1|1316410_1317337_+|osmoprotectant-ABC-transporter-substrate-binding-protein
MKHLKRFLFFILTSTFLLASCDLPGLGGGQSKNTVKISALATSESQIMAYMLKELIEHDTNGETSGTIINNLGSATIQHNALMNGDADISSTRYTGTDLVGVLEQEPITDTNKAMTITKKLFNQKFNQTFFNSYGFENTFAFMVTKETAKKYNLQTVSDLKKIKDKVNVGTDTTWIKRGGDGYAPFQKHYGFGFNSLKPMQIGLVYDALKNNKLDVALGYTTDGRIAAYDLVVLKDDQNFFPPYDASAVAPNKLLKEHPQIKKSISKLDDKINTEQMQKLNYEADGNGKEPAVVAETFLKKHNYFDEK
>NZ_CP007208.1|WP_029376994.1|1317758_1318613_-|autolysin
MTKHKKGSILSIIGLLIILGVAAVIVFTMISDQIFFKDVNEQEKVENLKVTLDKASKKQIDNYTSQQVSSKDNKSWRDASSTEIKAAMNSSEFIDSDTQKYQFLELDKYQGIDENRIKRMLIDNPILLKHSDDFLNAAKNKHVNEVYLISHALLETGSAKSELASGVEIDGKKYYNFFGVGALDEDPIKTGSEYAKKHGWDTPEKAISGGANFIHDHFLSNKDQNTLYSMRWNPKNPGEHQYATDIKWAESNASLMANFYKDMKTEGKYYKYFVYKDDEKHKTQ
>NZ_CP007208.1|WP_017722196.1|1318777_1319002_-|hypothetical-protein
MDYAHLNLEHFFAKHNDLDIIKDKSDFVMINNMTNEMMYRDGEIEGAIDLNRYYYKNRSQAASFIIMEYRKSQE

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Crispr_ID: NZ_CP007208_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007208_2

2298495-2298595

Orphan

Consensus_repeat	Method
AAACCATCTGTAACTTGTTGATTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007208_2

>merge|NZ_CP007208|2|2298495-2298595|CRISPRCasFinder
AAACCATCTGTAACTTGTTGATTTCCTGAAATCAACTGTTGTGCAGGCTGTCCTACTGCAGGTTCTAGCTGTTTCAAACCATCTGTAACTTGTTGATTTCC

>NZ_CP007208|2|2|2298495-2298595|CRISPRCasFinder
AAACCATCTGTAACTTGTTGATTTCC	TGAAATCAACTGTTGTGCAGGCTGTCCTACTGCAGGTTCTAGCTGTTTC
AAACCATCTGTAACTTGTTGATTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007208.1\|WP_029378565.1\|2309061_2309193_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP007208.1\|WP_029379227.1\|2284246_2284447_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|236998
NZ_CP007208.1\|WP_038679262.1\|2301145_2302468_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|274238
NZ_CP007208.1\|WP_029378555.1\|2297271_2297724_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP007208.1\|WP_029379228.1\|2283477_2284245_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP007208.1\|WP_037557373.1\|2284447_2285548_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274092
NZ_CP007208.1\|WP_029379225.1\|2286451_2287939_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP007208.1\|WP_051664348.1\|2289704_2295170_-\|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein	unknown	unknown	gnl\|CDD\|368038
NZ_CP007208.1\|WP_029378563.1\|2306761_2307856_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP007208.1\|WP_029378553.1\|2295489_2296311_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP007208.1\|WP_029378560.1\|2303984_2305433_+\|D-xylose-transporter-XylE	unknown	unknown	gnl\|CDD\|182225
NZ_CP007208.1\|WP_029379226.1\|2285540_2286125_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP007208.1\|WP_029378559.1\|2302473_2303964_+\|xylulokinase	unknown	unknown	gnl\|CDD\|273550
NZ_CP007208.1\|WP_029378566.1\|2309295_2310699_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP007208.1\|WP_038679260.1\|2299783_2300935_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP007208.1\|WP_029379224.1\|2288040_2288964_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP007208.1\|WP_029378561.1\|2305503_2306055_-\|phenolic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|226010
NZ_CP007208.1\|WP_029378562.1\|2306148_2306694_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP007208.1\|WP_038679257.1\|2296402_2296969_-\|DUF4064-domain-containing-protein	unknown	unknown	gnl\|CDD\|372544
NZ_CP007208.1\|WP_029378564.1\|2307852_2308581_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP007208.1\|WP_029378565.1\|2309061_2309193_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	9.23659e-06
NZ_CP007208.1\|WP_029379227.1\|2284246_2284447_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|236998	PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional.	1.1306e-13
NZ_CP007208.1\|WP_038679262.1\|2301145_2302468_+\|xylose-isomerase	gnl\|CDD\|274238	TIGR02630, Xylose_isomerase, xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose. [Energy metabolism, Sugars].	0
NZ_CP007208.1\|WP_029378555.1\|2297271_2297724_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.86031e-15
NZ_CP007208.1\|WP_029379228.1\|2283477_2284245_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.57692e-146
NZ_CP007208.1\|WP_037557373.1\|2284447_2285548_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.16097e-56
NZ_CP007208.1\|WP_029379225.1\|2286451_2287939_-\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP007208.1\|WP_051664348.1\|2289704_2295170_-\|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein	gnl\|CDD\|368038	pfam04650, YSIRK_signal, YSIRK type signal peptide. Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus.	2.87614e-08
NZ_CP007208.1\|WP_029378563.1\|2306761_2307856_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	9.01865e-25
NZ_CP007208.1\|WP_029378553.1\|2295489_2296311_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.01168e-10
NZ_CP007208.1\|WP_029378560.1\|2303984_2305433_+\|D-xylose-transporter-XylE	gnl\|CDD\|182225	PRK10077, xylE, D-xylose transporter XylE; Provisional.	0
NZ_CP007208.1\|WP_029379226.1\|2285540_2286125_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	3.18718e-29
NZ_CP007208.1\|WP_029378559.1\|2302473_2303964_+\|xylulokinase	gnl\|CDD\|273550	TIGR01312, Xylulose_kinase, D-xylulose kinase. This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see , was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. [Energy metabolism, Sugars].	0
NZ_CP007208.1\|WP_029378566.1\|2309295_2310699_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.47133e-139
NZ_CP007208.1\|WP_038679260.1\|2299783_2300935_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.71626e-38
NZ_CP007208.1\|WP_029379224.1\|2288040_2288964_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	8.36851e-35
NZ_CP007208.1\|WP_029378561.1\|2305503_2306055_-\|phenolic-acid-decarboxylase	gnl\|CDD\|226010	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.04839e-99
NZ_CP007208.1\|WP_029378562.1\|2306148_2306694_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.66302e-19
NZ_CP007208.1\|WP_038679257.1\|2296402_2296969_-\|DUF4064-domain-containing-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	3.62757e-14
NZ_CP007208.1\|WP_029378564.1\|2307852_2308581_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.59117e-75

>NZ_CP007208.1|WP_029378555.1|2297271_2297724_-|winged-helix-DNA-binding-protein
MENVDKTIEEAIIKFQIVMLHLNKEIVDIVKETGLSNLLSREQIEAMRIIKTEGKVTINELARLQNIFKTAASKRIAKLEEMGYVQRAHSDNKRIKLIKLSDEGEAFLKKATSVMTEAVKDRLGNKFTAEEVHHFVDQLTHIDNAFREHK
>NZ_CP007208.1|WP_038679257.1|2296402_2296969_-|DUF4064-domain-containing-protein
MKRTIERVLTWIGITLQLIAVILLAILIPMLGNNEIKDTFINQMMQEESSLTYGDANAFFSSLSGIVTTGLVIGIIILIIALIAAFLIGKKAKIAGVLLIIAGVISLLGNWINAVLWIVAGIMLLVRKPKAPVYSKDNDEDINPYIKDGSQVNEHNNSFVLSEEQKENEKEAIKDEYTKSDEENKYKY
>NZ_CP007208.1|WP_029378553.1|2295489_2296311_+|helix-turn-helix-transcriptional-regulator
MNYNLVIYKQHDKINYLNTPNFANLYLVIAGEVSFQKLASTYTFQQGEVFIVYDFEENLIISRQAIIACISINNITYHRFSLVYREGASDNYPPPKKITETYIETLKGILEEDFFNADIGVIKLINYLNHSKDNLYVNMSYSHNLIKNVVEYINTNYKKPLSLSYISKKFFVNSSYLSREFSKKMNISLLKYIKKVKIYSLSRELLLHGNWESTWREYGFRSYNTYLRDFKNIMHMSPKEFINQNSINQVNETIEQHELYKYLQQILDLIKSE
>NZ_CP007208.1|WP_051664348.1|2289704_2295170_-|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein
MKKVNSLFNEKQRYSIRKYHIGAASIIIGSVVFMNTGSLSYASEVDNKASEIVENEIHTNKERISNIDTAVQEKEDNKANSTIENQNNNPENQKSELKKEVSLVTELPISAPLLEKGNSKNDTQEKEVNKADKQLNDQINSGESPKQVIQENKDNQVEEHSNKNNNQIKDSKTGEVSNYHETELINKEDNLKVDGTDDTNKVVISQNENRQKVRRKRNVVNPSNDNNLTNDDYNKNANQMNTDVSSDGTMTYQWYPVIGGLSSQERFLITNGYGDNENRARKKATMLWLISNFDFTKEQRQSFKIQDLNSPLFGDDVYKWLEEAKKGNIIPKQGTMNLGRRNEMIISANNIILSDNKGFDRGIINFGDTRNFTPSDSDDVNNTTITSSDIDFGFTLKPPFEKIGVDNTWAVSDNEKEEIKSAIRKANSNINFVNINVSYNGTVFAQALNSSGEIVDSADLNANTVIIDKIFIEKKEKLDTLISLVENTKLLDESLYTPASINFLQRELDYTSIVIRDSYDPEINTIPDIISATNRLDYAIKSLVRRANVTELQNAISNAKNQGPFDNNIEEDQAIILALEVGENTVGNENTPQDVVDTVTTNINNALRERLQVKNLLQDVETLVNEAEEKNRNASNMVVTALTDGIFSNNENNTLTELVNSANNKKAEAQDKINLLPDSKKAPFQNRIDSLPTISIPEVNDADGNGIADDVDQAKARAENKVTEAEAADQAAKTKLTEYQQDGLITASEKADLENLATTAQSKKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADDEDQAKAQAESKVSEAEAADQAAKTKLVEYQQDGLITASEKIDLENLTATAQSKKAEAQGLVDALPDGLKNDLVTRLNNLTGIQVPAVNDADGNGIADDVDQAKAQAESKVSEAEAADQAAKTKLTEYQQDGLITASEKADLDNLVTTAQSKKTEAQGLVDALPDGLKNDLATRLNNLTGIQVPAVNDADNDGKKDDVDELKALVETKVQEAEAAHQNALAKLSEYQRDGLINQWEKNDILNLSHEVFSKKARAFALVDGLPKEQQDEFLNRLNKLTDLPIPEINDKNNNGIADDVDETKAQAESKVSEAEAANQAAKTKLTEYQQDGLITASEKADLDSLAATAQSKKTEAQGLVDALPDVLKGDLPTRLNNLTGIQVPEVNDADGNGIVDDKDRAQAESKVTEAEAADQVAKTKLSEYQEDGLITEPEKVALENLAATAQTAKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADNVDQAKARAENKVTEAEAADQATKTKLTEYQQDGLITASEKADLENLLVTAQSKKAEAQGLVDALPDVLKGDMATRLNNLTGIQVPEVNDADGNGIADDVDQAKARAENKVIEAESIDQTAKAKLVEYQEDGLIIEPEKVDLENLSAMAQSKKAEAQRLVDALPDVLKGDLPTRLNNLTGIQVPEVNDADGNGIADDVDQAKAQAESKVTEAEAADQAAKVKLSEYQQDGLITAPEKTDLENLAAMAQSKKTEAQRLVDALPDVLKGDLSTRLNNLTGIQVPAVNDADGNGIADDIDQAKAQAESKVTEAEAADQAAKTKLSEYQQDGLITASEKADLEKLAAIAQSKKAEAQKLVDAIPNDVKEALQNRLNRLEGIVVPSVSVNSNNGQSNSHNMQGKDDINKNKDTLQKSPALSSNPQKTLNSKADTSNDASNDMKGTHMSTANNESTNTTKLNINSDNTKRGKSNNVKVLSPSKVDEKIDAKTLPNTGEEATKDTTLFGALLASIGSLIVWRSRKKENTKETK
>NZ_CP007208.1|WP_029379224.1|2288040_2288964_-|AEC-family-transporter
MHEMLIILETVLLPIFIMIIIGYILQKKFSLDLKTLAKLNIYIFVPGFIFVKFYKTNFEIKLLLYIVLFFIIYIIILYGIGKLLTYFGTKDKGEATTLTNSILFFNSGNYGVPVNDLVFKGDPLAMSVQVIVLSLQNIFTFSYGIFSIQAVHIGKIKAMLGYFKMPVLYALIFAIILNYGNVTIPKFIWTPANYIADAMIAIALILLGAQIANIKFSFKWSSSYVFIFVRLIVGPVIALVIIKLMGLEGIIAQALFITSAMPTSVNSSVIAQEYDNYPELAAELVFLSTLLSAITVVIVIYISKILF
>NZ_CP007208.1|WP_029379225.1|2286451_2287939_-|xylulokinase
MNEAVLGIDVGTSSVKVIAVNKEGEVLAKVSEELDIIQLQSGYNEQQPDEWFEATKSCIRQILSNDSLNDIFIRGLSLSGQMHSLVALDSDNKPIRNAILWNDTRSTRQCATIEQHFGNYVLSNPVLEGFTLTKLLWIKDNEPNNWNKIATFLLPKDYVRFRLTGKINMEYSDASSTLLLDPKQKNWSKTIGSKFGIGDIYPTLVSSGDFIGYLESSLAKSLGLKEYVAVFAGGGDNACGALGAGVIKSNDTLCSIGTSGTLLTCEADEGKAYHHNLHYFNHVVENKSYVMGVTLAAGDSLNWLKNHVFPNLTFNQILSLASESTIGSEGLLFAPYLSGERTPHGDSQIRGSFIGLSTLHTNADIARSVIEGITYSLYETLVHLREKGKDITHITSIGGGAKNDFWLQLQADIFNTKVSKLKYEEGPCMGAAMLAIIGLNWYKSVEKIVDQFIIYDRTFYPNKAHHERYVKYFEVYQEVYRQTRPITARLLELSL
>NZ_CP007208.1|WP_029379226.1|2285540_2286125_-|thiamine-phosphate-synthase
MFVAITPYQDLSESHIKHYCEIEGVIDYLLIRTPMTTEEVIQWVHEIIKNGFSKDKIIIHSDINVIIQCDLSAIHFRENDPHIEEVQANYPDIQVSMSTHHKDGVANAKYLGIDFVLFGHVFETPSKPQQTPRAKSEVEGALQIDIPIIAIGGINQHTMPSLPSGFSGIAGISIFNQYSKQKLMNMKEVWDGHV
>NZ_CP007208.1|WP_037557373.1|2284447_2285548_-|FAD-dependent-oxidoreductase
MYDVIIIGSGVMGMSIARGLSQSFANIAVIDRDEAGKHASYKAGGMLGAQNEFTENSALFSLATTSQKMFEPLRDSLLEEVGVDIEYLNSGLIKLAANHYENKKIEQQYQFLRQHFTSVERLSSTDVQHMSNGAITSKHTKGLYMPEDHQINANHYTKALLKSLSHRHIDRIYQTTVTHVEAIKGGYRVDTQSETYYTEKLIVTGGAWTSRLLQQYLPCEAVSGVKGEVLLVEQPNLNLDVTMFLTNGCYVVPKLKNRYLIGATSYFDDYSVGVSNSGKSWLKSQALRYIPDLKNWKIINQWSGIRPYCQNEHPIMDEVNKDLFVIAGHYRNGILLSPLIGELISQWIINGHRPKQLYDFRLAEVK
>NZ_CP007208.1|WP_029379227.1|2284246_2284447_-|sulfur-carrier-protein-ThiS
MKCKINGDVFNFEQPINIQEVIQSLGLDETRIIVEHNETLIKREQFTSRIVNDEDNLELLEFVGGG
>NZ_CP007208.1|WP_029379228.1|2283477_2284245_-|thiazole-synthase
MFKIGNFTLNSRLLLGTGKFENEKVQTQAIEASETEVLTFAVRRMNLYDKDLPNPLAKVDLSKFITFPNTAGAKTAKEAVRIAEIADHAGVCDMIKVEVIGDDETLLPDPLETYEACKVLLEKGYTVCPYISNDVVLAKRLEELGVHAIMPLASPIGTGRGINNPLNLRYIIERVNVPVIVDAGIGSPKDACHAMELGADGILLNTAISSAADPVKMAEAMNKGISAGRLSYEAGRIPVKYTAQASSPTEGIGFL
>NZ_CP007208.1|WP_038679260.1|2299783_2300935_+|ROK-family-transcriptional-regulator
MENNFIVNENEKRVLKQIFNNSNISRTQISKNLELNKATISNILNNLKHKSLVNEVGEGNSTKSGGRKPILLEINQKYGYYISMDLTYDSVELMYNYFDAAILKQDSYELNDKNVSSILQILKSNINVSEKYDTLHGLLGISISIHGIVDDEQNIINLPFHKNEKRTFTDELKSFTNVPVVIENEANLSALYEKSLYINSNINNLITLSIHKGIGAGIIINKKLYRGSNGEAGEIGKTLVLESINNNDNEYYKIEDICSQDALIQKINNKLGITLTFTELIQYYNDGNSIVAHEIKQFINRMTVLIHNLNTQFNPDAIYINCPLINELPNILNEIKEQFSYFSQGSPFQLHLTTNVKQATLLGGTLAIMQKTLNINNIQMNIK
>NZ_CP007208.1|WP_038679262.1|2301145_2302468_+|xylose-isomerase
MSYFDINKVNYEGPKSNNAFSFKYYNPEEKLGNHSMSELLRFSVAYWHTFTADLSDPFGVGAAERDWDSLDEMEKAKARVDAIFEFMEKTRIDYFCFHDVDIAPEGASLKESNENLDIIVELIKEKMDQTGKKLLWNTTNNFTHERFVHGAATSSNAEVFAYAAAKVKKSLEIAKKLGSENFVFWGGREGYESLLNTNMKLELDNLATFFKMAKSYADEIGYKGQFLIEPKPKEPTTHQYDTDVATAHAFLQKYDLDKDFKFNIEANHATLVGHTFQHELRYARDNNMLGSVDANQGHPLLGWDTDEFPTDVYDTTLAMYEILKNGGLAPGGLNFDAKPRRTSFKQEDLILTHIAGMDTFALGLRVAYKMIEDNFFENIMDEKYKSFNEGIGKKIVEGETSFKELEDYAFNINTINNTSDHLEVIKSQINQYILNINNKD
>NZ_CP007208.1|WP_029378559.1|2302473_2303964_+|xylulokinase
MAYVIGIDIGTSALKTLVVNKSGDVVESYSVSYNTAHPKSGYSEIDPEIWYEATLESLKHILNHYTHNDISGISFSGQMHGLVVIDQEGNPIRPAILWNDTRTSQEVEDIKQNLGLNSLLQLTQNTVLEGFTLPKLMWLKNNEQDNYKRISKFMLPKDYIVYKLTGNVYTEPSDAAGTIMFSVKDENWSTELLHRLNIDPSICPEIIASHQKSGQLTEKVKNSLGIDSNINVYQGGADNACGALGSGITDEQKQLVSIGTSGVALSIENRTDYENDGNVHYFNHCVPNQKYIMGVTLSAGYSLEWLKQLISADENFTTFLKDINQSEIGANGLMYTPYLLGERTPHNDASVRGSFIGLDANTTQLDMKRAVIEGITYSINESIQIMKNNAININEIVSIGGGAKNNQWLQIQADIFNTTITTRIEEQGPAYGAAMIAAMGEQWFNTFNEMSEAWIAYHQKVYPIETNTKSYQDLFNIYKTIYDATQPVTQKLNKFK
>NZ_CP007208.1|WP_029378560.1|2303984_2305433_+|D-xylose-transporter-XylE
MSTYNNKKFIFKIALIATLGGLLFGYDTAVISGAEQSLQQYLTKDYGSFIHGITVSSALIGCIIGGLLSSSFSSRLGRKKSLQVAAILFIVSAILSGCPEFLFFNSTEPNLGLLIAFNLYRIIGGIGVGLASAISPMYISEIAPSSIRGKLVSWNQFAIIFGMLVVYFVNYGITYGQPQSWIQDIGWRYMFITEAIPAIAFFFLLFLVPETPRFLSLSNKNTEALSVLNRIYSSKNHAQNVLNDILATKNKLTDVKAPLFSFGKTVIIVGILLSVFQQFIGINVALYYAPRIFENLGSGSNTSMIQTVVMGLVNVIFTIIAILYVDKFGRKPLLIIGSTGMAIGMIGMSVLAANGAFGVITLIFLVLYTASFMMSWGPIIWVLLSEIFPNRIRSSAMAIAVAVQWLANFTITSTYPTMMDVSGAMTYGFYALMSILSGLFVWKFIPETKGKTLEELENVWKKEDVTSISNKEEKVQSNSHSI
>NZ_CP007208.1|WP_029378561.1|2305503_2306055_-|phenolic-acid-decarboxylase
MTNNFETLEDFLGTHLIYTYDNGWEYEMYVKNENTIDYRIHGGMVAGRWVRDQEANIVKLTEGVFKITWTEPTGTDVALDFLPNDQIMHGTIFFPKWVEEHPEITVTYQNDHIDLMEASREKYDTYPKLVVPEFAKISYIGNAGQNNETVVNVAPYEGILEDIRSGKFFDENYQHTNSNSLIK
>NZ_CP007208.1|WP_029378562.1|2306148_2306694_+|PadR-family-transcriptional-regulator
MAQKNILQYVLLGLLKNERMSGYDIKKAFERDIGEFWQANHSQIYPELKKLHGRLLIDKTIEITGEKLEKKIYAITDTGRQLLNEWLVSPTPELSVHKNEFNLKLYFINDRNDPILPVMFDEQIHLHELKLEHLKERRTALFSNEASQEQHFGHYLVLDYAIERETHNINWLKSCHQNFKD
>NZ_CP007208.1|WP_029378563.1|2306761_2307856_-|ABC-transporter-permease
MRFKAVFIRVAKELLRDKRTLALMLFAPILVLTLLYFVFDTNSETNLKIGITDHVPNKIVNELPSDKVDIEKVDSSDSVKNTMVDSELDSYITKDGSKIEVTYANEDPSKTDATKQLLASALQKNKMQDMMKIVEKIPDNMQQGNKQSSENLELDNHYLYGNSDSTYFDKMFPILIGFFVFLFVFLISGIGLLRERTSGTLERLLATSIKRSDIVFGYLAGYGLFAILQTLLIVFYAIIILNIELAGSIWWVLLVNILIALAALSMGIFVSTFANSEFQMIQFIPIVAIPQIFFSGIIPLENIANWVSFIGYLFPLRYAGDALTHIMIKGQGLEYIWFDICILFVFIIVFTILNIIGLKRYRKV
>NZ_CP007208.1|WP_029378564.1|2307852_2308581_-|ABC-transporter-ATP-binding-protein
MSEVAAKLTSATKYYGKKKVLDHINIELPFGKILGVIGPSGSGKTTTIKCLMGMEKLDEGHAQIFDTSIPNRKILNEIGYMGQIDALYESLTARENLVFFGNLMGLDGDKLKQAIDKNMKLVNLENELHQIVNTFSGGMKRRLSLAITLLSNPNLIILDEPTVGIDPSLRKDIWKQLNLLTEENKSVIVTTHVMGEAERCDYIGLIMEGRLFTMGTPKELKEKFGVNSIEEVFIKAETEAQS
>NZ_CP007208.1|WP_029378565.1|2309061_2309193_+|beta-class-phenol-soluble-modulin
MAEIVEAIGKAVSAGLSHDWATMGVSIAEVLGKGVDFVLGFFK
>NZ_CP007208.1|WP_029378566.1|2309295_2310699_-|sugar-porter-family-MFS-transporter
MKVNSKVSNRFIYFFGAFGGILFGYDIGVMTGALPFLRENWGIESGFIIGLITSSVMLGAIFGGILAGKLSDKLGRRKMILISAIIFVIGSILSGIAPHEGNYFLIISRVILGLAVGAASALVPAYMSEMAPAKYRGQLSGMNQTMIVSGMLLSYIVDYYLRGLPIEIGWRLMLGIAAVPALILFLGVLRLPESPRFLIKNNRFKEAKMVLSNLRNNRKVDEEFEEIKKTIQKENNVKNNQSLATLFNGKYKYLVVAGLGVAAFQQFQGANAIFYYIPLIVEQATGNSASDALMWPIIQGVILVLGSLLFIWIADKFNRRTLLMLGGTVMGLSFILPAIIHMFLPNANPILIVIFLSIYVAFYSFTWAPLTWVIVGEIFPLAIRGFASGSASSLNWIGSFLVGLLFPIMTAYFSQQIVFAIFGVICILGVLFVKKFVPESRGRTLEEIEAIGESHNSNKVNAQVKNI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

256296 : 263687

Pandoravirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377718.1\|256296_257136_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.3e-56	41.4
WP_029377717.1\|257506_258568_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	5.4e-63	42.8
WP_038678115.1\|258752_259007_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_029377715.1\|259070_259664_-	hypothetical protein	NA	NA	NA	NA
WP_029377714.1\|259900_260617_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	8.5e-52	44.2
WP_029377713.1\|260609_261038_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_029377712.1\|261040_261712_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.1e-64	54.9
WP_038678117.1\|261967_262561_+	aminodeoxychorismate/anthranilate synthase component II	A0A0B5J984	Pandoravirus	4.6e-27	32.6
WP_029377710.1\|262544_263687_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	2.3e-22	38.6

DBSCAN-SWA_2

276953 : 292728

uncultured_Caudovirales_phage(41.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377701.1\|276953_278009_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.1e-18	24.2
WP_017722532.1\|278258_278807_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	1.0e-28	37.8
WP_038679671.1\|278971_279934_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	1.5e-11	24.1
WP_029377699.1\|280273_281782_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-72	35.6
WP_029377698.1\|282265_283780_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	4.1e-72	36.0
WP_029377697.1\|283963_284464_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.5e-52	70.8
WP_029377696.1\|284485_285367_-	DMT family transporter	NA	NA	NA	NA
WP_017722526.1\|286091_286490_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.0e-51	74.2
WP_029377695.1\|286452_288558_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	89.7
WP_029377694.1\|288674_289643_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	7.7e-173	92.2
WP_029377693.1\|290013_290982_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.8e-136	79.2
WP_038678128.1\|290971_291931_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	4.7e-05	56.0
WP_038678130.1\|291927_292728_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.3e-13	28.9

DBSCAN-SWA_3

533593 : 542069

Tetraselmis_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029379097.1\|533593_534076_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.7e-19	42.0
WP_038678261.1\|534062_535196_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_029379095.1\|535195_535897_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	1.2e-45	42.1
WP_017724119.1\|535899_536160_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_038678264.1\|536159_536831_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_029379093.1\|536823_539013_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.7e-133	37.7
WP_029379092.1\|538991_540479_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-46	32.2
WP_029379091.1\|540471_541500_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-65	42.2
WP_038678267.1\|541502_542069_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-29	39.8

DBSCAN-SWA_4

1042610 : 1122205

Staphylococcus_phage(51.56%)

integrase,protease,head,capsid,tRNA,tail,portal,terminase,transposase

attL 1068929:1068947|attR 1110589:1110607

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377185.1\|1042610_1044068_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_029377184.1\|1044079_1044622_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_002483181.1\|1044752_1044902_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_029377183.1\|1045024_1047076_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_017724588.1\|1047197_1047797_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-60	54.2
WP_038678558.1\|1048049_1048469_-	transcriptional repressor	NA	NA	NA	NA
WP_029377181.1\|1048458_1049319_-	metal ABC transporter permease	NA	NA	NA	NA
WP_038678560.1\|1049315_1050089_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-20	29.2
WP_029377179.1\|1050309_1051200_-	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	3.4e-26	34.4
WP_029377178.1\|1051209_1052550_-	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	2.9e-53	34.6
WP_038678563.1\|1052826_1053930_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_029377176.1\|1053930_1054608_-\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	NA	NA	NA	NA
WP_017724596.1\|1054809_1055916_-	RNA polymerase sigma factor RpoD	F4YCU2	Synechococcus_phage	2.4e-37	37.2
WP_029377175.1\|1056046_1057831_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.1e-50	36.1
WP_029377174.1\|1057877_1058699_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_029377173.1\|1058712_1059345_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029377172.1\|1059679_1061071_+\|tRNA	glycine--tRNA ligase	A0A1V0SAN4	Catovirus	6.1e-46	27.3
WP_038678565.1\|1061665_1062424_-	DNA repair protein RecO	NA	NA	NA	NA
WP_029377170.1\|1062457_1063357_-	GTPase Era	NA	NA	NA	NA
WP_017724603.1\|1063356_1063761_-	cytidine deaminase	NA	NA	NA	NA
WP_029377169.1\|1063847_1064186_-	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_029377168.1\|1064194_1064656_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_029377167.1\|1064656_1065604_-	PhoH family protein	W8D063	Erwinia_phage	7.1e-46	46.1
WP_029377166.1\|1065988_1066657_-	hypothetical protein	NA	NA	NA	NA
WP_029377165.1\|1066673_1067657_-	flotillin-like protein FloA	NA	NA	NA	NA
WP_029377164.1\|1067669_1068380_-\|protease	serine protease	NA	NA	NA	NA
WP_002483157.1\|1068659_1068836_-	30S ribosomal protein S21	NA	NA	NA	NA
1068929:1068947	attL	NA	NA	NA	NA
WP_038678568.1\|1069129_1069540_-	YolD-like family protein	A0A2H4JEH6	uncultured_Caudovirales_phage	1.5e-61	82.4
WP_038678570.1\|1069659_1069839_+	hypothetical protein	NA	NA	NA	NA
WP_080704802.1\|1070714_1071476_-	CHAP domain-containing protein	A0A2H4J1Y5	uncultured_Caudovirales_phage	7.8e-88	59.2
WP_038678572.1\|1071531_1072410_-	N-acetylmuramoyl-L-alanine amidase	A0A1X9SIB3	Staphylococcus_phage	7.6e-119	67.0
WP_017722743.1\|1072468_1072744_-	hypothetical protein	A0A1W6JNR5	Staphylococcus_phage	7.1e-23	64.9
WP_038678574.1\|1072798_1073194_-	hypothetical protein	A0A2H4JCM1	uncultured_Caudovirales_phage	4.0e-43	68.5
WP_038678576.1\|1073180_1073603_-	hypothetical protein	A0A2H4JID2	uncultured_Caudovirales_phage	1.6e-58	75.7
WP_167330434.1\|1073640_1073793_-	hypothetical protein	U3PBM8	Staphylococcus_phage	2.7e-08	64.0
WP_038678578.1\|1073770_1076239_-	hypothetical protein	U3PDY0	Staphylococcus_phage	2.0e-265	76.3
WP_038678581.1\|1076280_1077933_-	hypothetical protein	P89922	Bacillus_phage	1.9e-22	41.7
WP_038679691.1\|1077944_1078766_-\|tail	phage tail family protein	U3PDX5	Staphylococcus_phage	4.9e-112	73.1
WP_080704803.1\|1078793_1083569_-	peptidoglycan DD-metalloendopeptidase family protein	U3PJ20	Staphylococcus_phage	0.0e+00	73.4
WP_038678583.1\|1084220_1084757_-	hypothetical protein	A0A2H4J7U3	uncultured_Caudovirales_phage	7.2e-56	79.2
WP_038678585.1\|1084830_1085427_-	hypothetical protein	U3PCW8	Staphylococcus_phage	3.6e-104	96.5
WP_144365160.1\|1085430_1085820_-	hypothetical protein	U3PBL6	Staphylococcus_phage	4.7e-65	96.9
WP_038678589.1\|1085836_1086259_-	hypothetical protein	U3PDX1	Staphylococcus_phage	2.1e-50	69.1
WP_038678591.1\|1086255_1086579_-\|head	phage head closure protein	U3PJ15	Staphylococcus_phage	1.0e-52	97.2
WP_080704779.1\|1086548_1086887_-\|head,tail	phage gp6-like head-tail connector protein	U3PG07	Staphylococcus_phage	2.7e-40	70.5
WP_167330435.1\|1086887_1087055_-	hypothetical protein	U3PCW5	Staphylococcus_phage	7.1e-10	81.8
WP_038678595.1\|1087069_1088407_-\|capsid	phage major capsid protein	U3PBL1	Staphylococcus_phage	3.7e-194	93.5
WP_038678597.1\|1088455_1089013_-\|head,protease	HK97 family phage prohead protease	U3PDW7	Staphylococcus_phage	4.2e-83	78.9
WP_080704804.1\|1089002_1090172_-\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	8.0e-217	97.9
WP_158483912.1\|1090240_1090417_-	hypothetical protein	U3PG03	Staphylococcus_phage	1.5e-23	100.0
WP_038678600.1\|1090429_1092178_-\|terminase	terminase large subunit	U3PCW2	Staphylococcus_phage	0.0e+00	93.3
WP_038678602.1\|1092170_1092641_-\|terminase	phage terminase small subunit P27 family	U3PBK8	Staphylococcus_phage	2.1e-75	88.5
WP_051664371.1\|1092765_1093104_-	HNH endonuclease	A0A2H4J2W1	uncultured_Caudovirales_phage	2.9e-58	98.2
WP_038678606.1\|1093571_1093970_-	hypothetical protein	H9A0U2	Staphylococcus_phage	3.4e-26	46.6
WP_038678607.1\|1093984_1094329_-	hypothetical protein	NA	NA	NA	NA
WP_144365162.1\|1094479_1094611_-	transcriptional regulator	A0A2H4JAX0	uncultured_Caudovirales_phage	2.6e-12	93.0
WP_038678609.1\|1094614_1094860_-	DUF1381 domain-containing protein	U3PD04	Staphylococcus_phage	4.8e-07	60.0
WP_080704780.1\|1094895_1095483_-	dUTP pyrophosphatase	A0A2H4JB01	uncultured_Caudovirales_phage	8.1e-85	94.0
WP_038678611.1\|1095575_1095758_-	hypothetical protein	U3PJ54	Staphylococcus_phage	2.2e-09	54.9
WP_038678614.1\|1095893_1096274_-	hypothetical protein	A0A2H4J4E7	uncultured_Caudovirales_phage	8.9e-16	56.1
WP_038678616.1\|1096379_1096760_-	hypothetical protein	A0A1D6Z256	Staphylococcus_phage	9.1e-21	46.6
WP_038678618.1\|1096743_1096953_-	hypothetical protein	U3PE03	Staphylococcus_phage	2.2e-24	85.1
WP_038678620.1\|1096949_1097906_-	DNA cytosine methyltransferase	D2IZY5	Enterococcus_phage	1.7e-100	56.3
WP_144365190.1\|1097906_1098275_-	DUF3310 domain-containing protein	A0A2H4JC86	uncultured_Caudovirales_phage	1.9e-47	54.2
WP_038678624.1\|1098422_1098797_-	hypothetical protein	A0A2H4J2U6	uncultured_Caudovirales_phage	1.5e-20	49.5
WP_038678626.1\|1098810_1098999_-	hypothetical protein	A0A1W6JQ89	Staphylococcus_phage	1.5e-21	79.0
WP_038678628.1\|1098991_1099402_-	RusA family crossover junction endodeoxyribonuclease	O80087	Staphylococcus_phage	8.3e-44	67.8
WP_142760500.1\|1099412_1099619_-	hypothetical protein	NA	NA	NA	NA
WP_038678630.1\|1099625_1099787_-	hypothetical protein	A0A0H3U301	Staphylococcus_phage	2.8e-11	66.7
WP_038678632.1\|1099780_1100554_-	ATP-binding protein	A0A1W6JP70	Staphylococcus_phage	3.1e-108	83.1
WP_038678634.1\|1100564_1101305_-	replication protein	A0A0H4IPD8	Staphylococcus_phage	1.3e-47	61.3
WP_038678637.1\|1101291_1102086_-	hypothetical protein	A0A2H4J5K3	uncultured_Caudovirales_phage	1.7e-141	96.1
WP_038678640.1\|1102069_1102315_-	helix-turn-helix transcriptional regulator	A0A1W6JNL6	Staphylococcus_phage	2.0e-13	50.0
WP_038678642.1\|1102311_1102983_-	hypothetical protein	A9CR65	Staphylococcus_phage	2.1e-92	69.4
WP_038678644.1\|1103552_1104320_-	ATP-binding protein	Q8SDW5	Staphylococcus_phage	3.1e-108	75.5
WP_038678646.1\|1104312_1104546_-	DUF2483 family protein	A0A2H4JD57	uncultured_Caudovirales_phage	8.3e-33	91.7
WP_038678648.1\|1104542_1104809_-	DUF1108 family protein	A0A1W6JQ03	Staphylococcus_phage	1.2e-11	42.0
WP_038678650.1\|1104873_1105053_-	hypothetical protein	NA	NA	NA	NA
WP_038678652.1\|1105049_1105256_-	hypothetical protein	NA	NA	NA	NA
WP_038678654.1\|1105314_1105524_+	hypothetical protein	NA	NA	NA	NA
WP_158483914.1\|1105688_1105838_-	hypothetical protein	NA	NA	NA	NA
WP_038678656.1\|1105849_1106623_-	phage antirepressor KilAC domain-containing protein	A0A2H4JAT4	uncultured_Caudovirales_phage	3.3e-126	83.2
WP_038678658.1\|1106765_1106975_-	DNA-binding protein	Q4ZA66	Staphylococcus_virus	3.0e-26	91.0
WP_038678659.1\|1107172_1107796_+	XRE family transcriptional regulator	A0A2H4J3T7	uncultured_Caudovirales_phage	6.8e-90	81.7
WP_051664337.1\|1107851_1108907_+	hypothetical protein	A0A0A8WJ41	Clostridium_phage	3.8e-16	28.7
WP_158483916.1\|1109014_1109191_+	hypothetical protein	NA	NA	NA	NA
WP_038678661.1\|1109443_1110496_+\|integrase	site-specific integrase	Q4ZB10	Staphylococcus_virus	1.1e-113	59.0
WP_029377163.1\|1110744_1111497_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
1110589:1110607	attR	NA	NA	NA	NA
WP_029377162.1\|1111498_1112437_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_029377161.1\|1112440_1113577_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	9.7e-26	26.9
WP_029377160.1\|1113723_1115568_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.9e-136	46.6
WP_038678664.1\|1115624_1116236_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_038678665.1\|1116262_1117243_-	heat-inducible transcription repressor HrcA	NA	NA	NA	NA
WP_029377157.1\|1117343_1118468_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_029377156.1\|1118566_1120390_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	2.6e-20	40.1
WP_017724620.1\|1120711_1120963_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_144365166.1\|1121063_1122205_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.1e-66	89.9

DBSCAN-SWA_5

1168375 : 1177574

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377115.1\|1168375_1168894_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	46.9
WP_029377114.1\|1168906_1171186_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.7e-72	29.6
WP_029377113.1\|1171419_1173696_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.6e-30	33.5
WP_017724668.1\|1174103_1174364_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.7e-06	44.1
WP_029377112.1\|1174381_1175521_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-85	44.7
WP_029377111.1\|1175541_1176567_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_029377110.1\|1176569_1177574_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	3.4e-06	30.8

DBSCAN-SWA_6

1306193 : 1316240

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377005.1\|1306193_1306754_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.0e-60	60.5
WP_029377004.1\|1306849_1307251_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_029377003.1\|1307401_1308358_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_038678746.1\|1308576_1309401_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_029377001.1\|1309667_1310669_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.5e-123	65.5
WP_029377000.1\|1310866_1311325_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-58	77.0
WP_029376999.1\|1311338_1312520_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-169	73.3
WP_029376998.1\|1312530_1313163_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-72	63.8
WP_029376997.1\|1313169_1314213_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.1e-130	64.7
WP_038678748.1\|1314776_1316240_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	4.6e-12	61.8

DBSCAN-SWA_7

1319697 : 1328926

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029376985.1\|1319697_1320534_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-112	69.0
WP_029376984.1\|1320748_1321657_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	7.4e-93	78.9
WP_029376983.1\|1321750_1322947_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.8e-195	86.4
WP_029376981.1\|1323335_1324925_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	7.7e-263	81.8
WP_037557004.1\|1324989_1325739_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.9e-102	72.2
WP_037556911.1\|1325746_1326223_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.2e-41	53.2
WP_029376978.1\|1326289_1326526_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.7e-31	84.7
WP_029376977.1\|1326522_1327527_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-90	48.5
WP_029376976.1\|1327546_1328926_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.9e-165	60.7

DBSCAN-SWA_8

2737361 : 2753340

Staphylococcus_phage(23.08%)

integrase,protease,head,capsid,portal,tail,terminase

attL 2727395:2727410|attR 2762163:2762178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2727395:2727410	attL	NA	NA	NA	NA
WP_029378857.1\|2737361_2738828_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.1e-97	40.9
WP_029378858.1\|2738849_2740391_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.8e-22	31.6
WP_038679584.1\|2740484_2741621_-\|integrase	site-specific integrase	Q938N9	Temperate_phage	2.7e-68	43.2
WP_158483922.1\|2741717_2742365_-	helix-turn-helix domain-containing protein	A0A2H4JGT9	uncultured_Caudovirales_phage	1.1e-05	28.6
WP_038679586.1\|2742571_2742781_+	helix-turn-helix transcriptional regulator	A0A1W6JQE8	Staphylococcus_phage	4.1e-15	64.9
WP_038679588.1\|2742781_2743042_+	hypothetical protein	NA	NA	NA	NA
WP_038679590.1\|2743090_2743270_+	hypothetical protein	NA	NA	NA	NA
WP_051664364.1\|2743271_2743580_+	hypothetical protein	NA	NA	NA	NA
WP_038679592.1\|2743683_2744559_+	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	9.0e-80	51.2
WP_051664365.1\|2744572_2746291_+	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	2.7e-128	43.4
WP_051664366.1\|2746616_2747039_+	hypothetical protein	NA	NA	NA	NA
WP_038679595.1\|2747204_2748410_+\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	2.9e-60	35.0
WP_038679597.1\|2748396_2748966_+\|head,protease	HK97 family phage prohead protease	A0A0M4R4P2	Enterococcus_phage	1.0e-20	33.1
WP_038679599.1\|2748967_2750200_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_038679600.1\|2750266_2750548_+\|head,tail	phage gp6-like head-tail connector protein	A0A0S2GLH6	Bacillus_phage	4.7e-06	31.1
WP_038679603.1\|2750540_2750831_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	1.2e-17	47.4
WP_038679605.1\|2750988_2751321_+	hypothetical protein	NA	NA	NA	NA
WP_038679608.1\|2751313_2752957_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.3e-148	49.5
WP_080704807.1\|2753013_2753340_+\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	5.6e-11	42.1
2762163:2762178	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007208

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection