CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008713	Candidatus Arthromitus sp. SFB-mouse-NL chromosome, complete genome	2 crisprs	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	0	5	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008713_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008713_1

116571-116865

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

4 spacers

The CRISPR arrays of NZ_CP008713_1

>merge|NZ_CP008713|1|116571-116865|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATTTATTTGTGAATTATTTGATATAAGTCGCACCTCGTCGCACCTCACGCAGGTGCGTGGATTGAAATGATTCTATTTCCAATGTTAGGCATAAAAAAATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATAATAATTAAATCTGATGTTGGTTTTCTGGTCCCGGTCGCACCTCACGCAGGTGCGTGGATTGAAATAAAGATAGACTAAAAGAATTACGTCTTTCAAACAGTCGCACCTCACGCAGGTGCGTGGATTGAAGG

>NZ_CP008713|1|1|116571-116865|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTATTTGTGAATTATTTGATATAAGTCGCACCTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GATTCTATTTCCAATGTTAGGCATAAAAAAATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAATTAAATCTGATGTTGGTTTTCTGGTCCCG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGATAGACTAAAAGAATTACGTCTTTCAAACA
GTCGCACCTCACGCAGGTGCGTGGATTGAAGG

>NZ_CP008713|1|1|116571-116865|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTATTTGTGAATTATTTGATATAAGTCGCACCTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GATTCTATTTCCAATGTTAGGCATAAAAAAATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAATTAAATCTGATGTTGGTTTTCTGGTCCCG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGATAGACTAAAAGAATTACGTCTTTCAAACA
GTCGCACCTCACGCAGGTGCGTGGATTGAAGG

>NZ_CP008713|1|1|116571-116865|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTATTTGTGAATTATTTGATATAAGTCGCACCTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GATTCTATTTCCAATGTTAGGCATAAAAAAATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAATTAAATCTGATGTTGGTTTTCTGGTCCCG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGATAGACTAAAAGAATTACGTCTTTCAAACA
GTCGCACCTCACGCAGGTGCGTGGATTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008713.1\|WP_005807558.1\|118666_118885_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP008713.1\|WP_042293990.1\|117765_117969_+\|DUF739-family-protein	unknown	unknown	gnl\|CDD\|283090
NZ_CP008713.1\|WP_081832567.1\|116912_117626_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NZ_CP008713.1\|WP_042293996.1\|119155_119422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235330
NZ_CP008713.1\|WP_005807584.1\|108306_109728_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NZ_CP008713.1\|WP_042293999.1\|119438_119738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_042293977.1\|103751_107291_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NZ_CP008713.1\|WP_042293986.1\|113738_114674_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_005807556.1\|118889_119069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_005807586.1\|107319_108279_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP008713.1\|WP_005807572.1\|115440_116175_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NZ_CP008713.1\|WP_005807562.1\|118087_118303_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP008713.1\|WP_042293979.1\|109909_111295_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP008713.1\|WP_042293981.1\|111347_112538_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP008713.1\|WP_042293992.1\|118421_118622_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP008713.1\|WP_042293988.1\|114848_115100_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NZ_CP008713.1\|WP_042294001.1\|119737_120874_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NZ_CP008713.1\|WP_144238980.1\|113242_113779_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_042293983.1\|112700_113192_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_042294002.1\|120889_121450_+\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531

Protein	Function_ID	Function_description	E-value
NZ_CP008713.1\|WP_005807558.1\|118666_118885_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.08849e-08
NZ_CP008713.1\|WP_005807584.1\|108306_109728_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NZ_CP008713.1\|WP_081832567.1\|116912_117626_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.22141e-27
NZ_CP008713.1\|WP_042293996.1\|119155_119422_+\|hypothetical-protein	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0.00482899
NZ_CP008713.1\|WP_042293990.1\|117765_117969_+\|DUF739-family-protein	gnl\|CDD\|283090	pfam05339, DUF739, Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	0.00919517
NZ_CP008713.1\|WP_042293977.1\|103751_107291_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NZ_CP008713.1\|WP_005807586.1\|107319_108279_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP008713.1\|WP_005807572.1\|115440_116175_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.58912e-16
NZ_CP008713.1\|WP_005807562.1\|118087_118303_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.34961e-16
NZ_CP008713.1\|WP_042293979.1\|109909_111295_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.41655e-130
NZ_CP008713.1\|WP_042293981.1\|111347_112538_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.04866e-39
NZ_CP008713.1\|WP_042293992.1\|118421_118622_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.24725e-13
NZ_CP008713.1\|WP_042293988.1\|114848_115100_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	3.60521e-15
NZ_CP008713.1\|WP_042294001.1\|119737_120874_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	0
NZ_CP008713.1\|WP_042294002.1\|120889_121450_+\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	9.98138e-95

>NZ_CP008713.1|WP_005807572.1|115440_116175_+|DUF3644-domain-containing-protein
MEEKEKLLKKSKEIFSLVSCMYCYYSGPYKIETVCILLCNAWELMLKAYIIGKKGKEGIVYKNKQNKGRTIGLNECISKVFTNKHDILRKHLESVIRYRNSVVHYTVDSFDLSLYSKIEYCIVNFKAKMCELHNVNMSDMIVNQANEEILKNDVDLYKYSKKSLCREINNVLKSLGIEFKIDSQTFELFDRVYGIKENKEYCLISNVNNRPSYRYSSRVLNFIVGLIQKNPNNIKEVLKNKIKK
>NZ_CP008713.1|WP_042293988.1|114848_115100_-|peptidase-S24
MSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNLKYEPMYYDKNDIADKPIHIIGKVIELRRRF
>NZ_CP008713.1|WP_042293986.1|113738_114674_+|hypothetical-protein
MKQTVSELMKEGIRITRWEDTTGNTLDEIIEKLSSIPENNNDNACTRYLDWEVDKIFESNINIELSGQKIEYNAFKFSFTYVPVGYQKDDDVSSIKTGFIIVYKSKGKIRYIIDKNSDALSMLRKKLSYTGRSEVRRDTYPFKKYHFIWLIGKIYIGNNILEGSEGLNDLSICTIRGFKGDTENSLATIKAEGEDVIKSLSTSCFLIESDKLDQISMEMEYKHYKNISVKLMNKTINLLTNRCLGVSSDKDIFELILTLYIEIVPIIIQNYDNEVSSGQWNEEKYTEFLKRVAEDVNTGIKSKLKISTGEE
>NZ_CP008713.1|WP_144238980.1|113242_113779_+|hypothetical-protein
MLLTDFFNIAEYIRFIPSVRAYEFGLTIYIAIFEMIYQGILIIWDKYKLHISFIFYISEMDKSDVVPCARGCEGVFMINYFIKLHGNLNRLNKCKMYLDTNPILGSQTRSDYYCEGNTVVWDLDKIRNSCSAKMLKSGKLSLIKERDEYISLELRPKINKKWGIIFETNGFRIDEGRD
>NZ_CP008713.1|WP_042293983.1|112700_113192_+|hypothetical-protein
MKSKYGKLFKNLSDNTINCFEYGSVQEYYPFIQRIKQQGFNQCIITSDVMISIIEHFILRYNAEIISINFMVEDSELQIEINNILGLMRKSEAYWSVLKQRLLFLSENDCVEMKEVEFKICSGELNTLLSVKVNGVIVVGEFEFYEVSNIISTIIEDYLDCKY
>NZ_CP008713.1|WP_042293981.1|111347_112538_-|site-specific-integrase
MTGSLRKRGDKWYYSFEAARVDGKRKRIERVGGRTKKEAEAALRKALEDYENGEQFQKTNISVSDYMDLWFDAYVLLNCRYNTQRSYRLIIDKHIKPSLGILKLTSLTPGKLQDFINNKYLTGISKNHLNNIISLLSGSLNYSVHPMNFLKNNPMQYVKIPKYNNTKTTDKHKIITNDDFNAIIKRFPERSSFYIPLMIGYHTGCRIGEAMGLTWDDIDLDNNTININKLIYKKDTSWYFGEPKTTSSSRIINIGNTLKNALKYHKRYIDIKRLEYGEHYIKQYNINDKITTSSLNLKAPLLNMVCVKSNGMLLTPDSFKYASRVINYELGIPFNFHSLRHTHATLLVENGANIKDVQHRLGHNNIQTTLNTYTHNTDKLAKQSVDIFENIILPTY
>NZ_CP008713.1|WP_042293979.1|109909_111295_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MVDVANKYIVKIEDYDSQGNGVSRIDDLVVFVPNTIVGEIVEICIEKVNKNFLRGRVNEVLSVSESRVLPICEIYEKCGGCNIQHMNYKEQIRFKESKIINTLNKIGDIRNIKMEKFYAMSIPYEYRNKVQVPFGLSDSGVKAGFYEKNTHNIINMDFCHIQFHEGNDIVKETREYIKKNNIKPYDESANYKKGCDYGLVRHLLIRKGYNTNEIMLVIVLTRDDEEFLNGYMDFILEKFKNIKTIIVNVNNEITNVILGKYERVLYGDGYIKDKINDFIFRIHSKSFFQVNTKQSEKLYSAAIEMCDLKFGDTLLDAYCGIGTIGICASRKIKQVYGIEEVKESIVDANENKIINNIKNIEFIHGKVEDEIFNLVNSGVNINAVILDPPRKGVKERVLHKIRDINCRKIVYISCDVSTLSRDAKILNSLGYKIDKIRGVDMFCQTYHVETIVRFTLRPSGF
>NZ_CP008713.1|WP_005807584.1|108306_109728_+|pyruvate-kinase
MRKTKIVCTIGPASDKYDILRELIEKGMNVMRLNFSHGDFEEHGNRIKLVRQISEELNKNVGIMLDTKGPEIRTKKFEGKVLLNQGDKFVIYTKEDIVGDSTRCSVTYEDLYKDVEVGGKILIDDGLVALEIEDVEDGKISCIVLNSGEISSNKGVNLPKSKIKLPALTEKDKNDLLFGIKNDVEYVAASFIRKSDDVIQIRKFLDLNGGDFIKIISKIENQEGLDNIDEIIDSSDGIMVARGDLGVEIPIENLPHWQKLIIKKCNDRGKFVITATQMLDSMIRNPRPTRAEASDVANAIHDGSDAVMLSGETANGKYPLEAYEIMDKIIVTTEQSLDYEGKLQKKLSKIEYKDVPNTIALFSCTTANEVGAKAILACTKSGATAKFVSRFRPECPIISITQMKKVARMLSIYWGVYTQTISETIDNTDMLIDLSVDKAKKEYNFKDGDLVVVSASVPANFKGHTNMLKVHEI
>NZ_CP008713.1|WP_005807586.1|107319_108279_+|6-phosphofructokinase
MKKIAILTSGGDAPGMNAAVRSVVRYALSKDIEVLGIHRGYHGLLHGEIESLSRRSVSDIIDRGGTFLKTARCLEFKQEEVRAQAYEILKSHNVDGLVVVGGDGSFTGAHLLSKFGLSTVGIPGTIDNDLPYTDYTIGFDTALNTILDAVRKLRDTSSSHERVSIVEVMGRNCGDLALYSALAGGAEAVIVPEYPFNREGLCKTILESKKNKKLHSLIILAEGAGNAEDLRKYIQQKIGLDTRATVLGHIQRGGIPTGRDRVLASVMGRKAVDTLLSNEVCAKVIGVKENTVFDMDIEEALKIEKKFNKDLYDLVNKLV
>NZ_CP008713.1|WP_042293977.1|103751_107291_+|DNA-polymerase-III-subunit-alpha
MNDFVHLHVHSEFSLLDSSCKIRNLVERAKELGMTSLAITDHGVMYGCLEFYKACKMYGIKPIIGCEIYVANKSMDIKNADKDNFTSHLVLLVKDEIGYRNLLKIVSDSFIRGFYYKPRVDIEYLKEHSEGLIALSACLSGGISKYILRNDIDGAKNLSIIYKEIFKEDFYLEIQDHGIEDQKKVNNLLLEFSSELDIKLVVTNDVHYIKKDDANAHDVLICIQTGSNVDEERRMKYHGDQFYLKSKDEMYEAFPNYMDGLLNTIEIRDKCNFEYKFHENMPPKYIMDNSLEPFEYLKRLCYLGLINKYDEFSHEIEIFKIEDILDDSKFEILKEEIGKNITDTKKKLVDRVKYELNLINSMGFVDYFLIVWDFIKFCMEKSIPTGPGRGSVAGSIVAYVLNITKVDPIKYSLIFERFLNPERISMPDIDSDFCNERREEVISYVRDKYGDQNVSNIITFGTMAAKACIRDVGRAMNYPYGEVDKIAKMVPNMLNITIDLALLYNKELNDLYNNDLRVKKLIDISKRLEGLPRHTSIHAAGVIISPYNLTDLIPVKKDGDMLVTQFPMANLEELGLLKMDFLGLRTLTVINDCIKIIEKNKGIKIDLDNIDFDDQNVFNMIGDGKTCGVFQLESFGMTSFMKELKPNSIEDIIAGISLYRPGPMDEIPNYIKNKNNIGDIKYLTKELEDILNVTYGVIVYQEQVMEIVQKLSGYSLGRSDLVRRAMAKKKHEEMEKERKKFVYGYKDGEEIIKGCVNNGIDEKISHKIFDQMVDFASYAFNKSHAAAYAIIAYETAYLMRYYKSEYICALLNSVINNMDKVCYYIRFGESMNIKIFPPCVNNSHNKFIVEGEYIYFGLSAIKNLGEGACEKIVYYREKYGKFKNEYDFFKACVKCSINKKGIESIIKSGALDVFNISRSYLLMNFEKIVDGISKEFRENLEGQMNLFGLIGREDDKTFKLNNRDDLYDDSDKNLLFEKEVLGIYISGHPIHKYKEILDKVCTNSISDFYDDDMKINDGYEVVIGGSVREFKKIITKNNSMMCFLYVEDKYSSIECVVFPKVYEKFNYLINDNSIVIIKGVFKKNDDVFKIIVNEIIGIEEYDRFKLYILCKSLKEITNSFNKAKDILISNRGHVNVNLYSLEGKKVFRVNDYGVNLSNSLICELNKVFSQEFVKVIITK
>NZ_CP008713.1|WP_081832567.1|116912_117626_-|helix-turn-helix-domain-containing-protein
MDTNIIEKKKLGDKIKRIRLMRGLSQDELAKRCGYKARSTINKIETGINDVPRSKIRLIAQALDINESVLLNDQDHIEFINAQQPIQVISSAKLISYKNGLGLNVQACVKIPILGTVIAGIPISAIEEIIGWEEISPKLASQGEYFALVIKGDSMSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNSKYEPMYYDKNDIADKPIHIIGKVVELRRRF
>NZ_CP008713.1|WP_042293990.1|117765_117969_+|DUF739-family-protein
MDNIRLVDCIHKSGLKHKYIAGQLSLSKQGWSNKINNRTEFKLSEIKRLCALLNLDSKQRDHIFFED
>NZ_CP008713.1|WP_005807562.1|118087_118303_-|helix-turn-helix-transcriptional-regulator
MILQKRLREMRNTLHLTQSKVAKDVDINERTYQRYENGDIEPKASNLFKLAKYFNVSTDYLLGLSDDPTRR
>NZ_CP008713.1|WP_042293992.1|118421_118622_+|helix-turn-helix-transcriptional-regulator
MINKLKKLRLNAGLTQNYISHKVGLHPRNYQKIEQGKHLPRVDRALAIAKALNTTVEELFSNDKLR
>NZ_CP008713.1|WP_005807558.1|118666_118885_+|helix-turn-helix-domain-containing-protein
MANDILYTVPEVSKLIKTNPSYVYTLIRLGLLPALKLGSLKVRRTSLLDFLERFEGKDLTDLEHIRDLETGV
>NZ_CP008713.1|WP_005807556.1|118889_119069_+|hypothetical-protein
MIRKQIESLIGQVDDRTYAEALKMTEADIKANRLSFNLKTQIEDFILILINSIKIIRRK
>NZ_CP008713.1|WP_042293996.1|119155_119422_+|hypothetical-protein
MDPLTDELVIAYSVQPNDTEVKIVKLKLEEWDKDELKDILAGDFVTFETLEVVTPEELSDVASDWISFNDDLTDDEFIDSCVKNITKQ
>NZ_CP008713.1|WP_042293999.1|119438_119738_+|hypothetical-protein
MILTFKLDSNDTNGIKKLIALCENLLSFEETATPELEFVREEPKTDIKIDDLRNALIKLAKDKGKETAKDLLNEFNVEKLTDVNTSDYDRLLQRIREVQ
>NZ_CP008713.1|WP_042294001.1|119737_120874_+|DUF2800-domain-containing-protein
MLHAKLSASGAKKWINCPLSVVLESKMLNEETPYAKEGTLAHELSELKLRRELNLIGKESYDTEVSKLDYDDEMDKYTDYYCDVVMEIVNKYDRNYSTVRLEEKVDFSPWVPEGFGTSDVIIISDNTAEVVDLKYGKGVKVSADNNPQLMLYALGVLNDYNYICDIKEVNLTIVQPRLDSISSFKINVYDLLEWGEDIRVKALKAFNGDGDCVVGKHCDEGFCRARPICKAYADERLKIAKYDFRDPAELSSDDIADILGTVDELVRWSKTIKEYALTKALSGEEYKGFKLVEGRSNRAFNIDDSEVIEILKGGGFKESEVCETTLKSLSSLEKMIGKKNFKTMLGSHVIKPMGKPTLVPIDDVRPVYNSAVNDFNNI
>NZ_CP008713.1|WP_042294002.1|120889_121450_+|DUF2815-family-protein
MENLNTKVITGKVRFSYANVWEPKSINGSNPKYSISLLIPKSDTQTLNNIKQAIENAKKIGLSVFNGKVPANLKTPLRDGDIEKPDDEIYAGCYFVNANSVNKPGMLDKYKNPITNPEDFYSGCYGYASINFYAFNTNGNKGIACGLNNLMKIEDGEPLGGRVSAEIDFEGIDVATLNAEMDEIFG

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Crispr_ID: NZ_CP008713_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008713_2

738019-739498

TypeI

I-C

Consensus_repeat	Method
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTNACGCAGGTGCGTGGATTGAAAT	CRT

22 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP008713_2

>merge|NZ_CP008713|2|738019-739498|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTTACGCAGGTGCGTGGATTGAAATATTCGTTCTCCATAAATGCATAACAACCAACACGTCGCACCTTACGCAGGTGCGTGGATTGAAATAAAGAGAGCCTGATAATGAAGGTTTGACTTATTGGTCGCACCTTACGCAGGTGCGTGGATTGAAATTCTTCTTTGCCTAATTTCTGCATACTCCGAAACTGGTCGCACCTTACGCAGGTGCGTGGATTGAAATGCAAAAAATCACAAATATGACTGGTTCTTTTAAGTCGCACCTTACGCAGGTGCGTGGATTGAAATTTTTGCTATACGGAAACAAAGCATAAAAGTATAGTCGCACCTTACGCAGGTGCGTGGATTGAAATTAAAATATCACTCATATTAATACGACTATATCTGGTCGCACCTTACGCAGGTGCGTGGATTGAAATCTGTCTCTGTGTAAGTCCCACCTTCTGGTAATAGTCGCACCTTACGCAGGTGCGTGGATTGAAATATCGATAATATATAAGGTTTTCATCTTAGCGTTAGTCGCACCTTACGCAGGTGCGTGGATTGAAATTATCTCATATAATGCATATAATACTATATTTATGTCGCACCTTACGCAGGTGCGTGGATTGAAATTAATGCTTTTGGGTCTATATTGTTACTCTTAAAAGGTCGCACCTTACGCAGGTGCGTGGATTGAAATATCGGCTCTATCTATATAATCTTTTTTGAGCCAGGTCGCACCTTACGCAGGTGCGTGGATTGAAATATCAAACAAAATCACTATTTTATGTGGATGTGGGTCGCACCTTACGCAGGTGCGTGGATTGAAATTCAATTTCCCGTACAGTAAATCCTTTACCGTACAAGTCGCACCTTACGCAGGTGCGTGGATTGAAATCAGTCGGAACATCACCATTATTAATCACATCAATGTCGCACCTTACGCAGGTGCGTGGATTGAAATTACAATACACGTATTATTTAGATTACAATCGTTTGTCGCACCTTACGCAGGTGCGTGGATTGAAATAATCATTGACCTATTTCCTCCTTAATAAAACAAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATCAGATAAATTATATTGTTTTCCATTACATCTTTTGTCGCACTTCACGCAGGTGCGTGGATTGAAATCCTGTATGCATTAGGTGTCCTTTTATTATCAATGTCGCACCTCACGCAGGTGCGTGGATTGAAATATCTGAATTATTTTCGAGGTGTTAATGGATAGAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATTCAGGCTCACCATTAAATTTTAATTACTTTATGGTCGCACCTCACGCAGGTGCGTGGATTGAAATTGGTAAAGTAGCATATTCTAAGGGAAATAAAATGTCGCACCTCACGCAGGTGCGTGGATTGAAATCTAACCATTCAACAGGTGTATCAAGATAAGTATTATGTCGCATCTCACGCAGGTGCGTGGATTGAGAA

>NZ_CP008713|2|2|738019-739430|PILER-CR
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATTCGTTCTCCATAAATGCATAACAACCAACAC
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AAAGAGAGCCTGATAATGAAGGTTTGACTTATTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCTTCTTTGCCTAATTTCTGCATACTCCGAAACTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	GCAAAAAATCACAAATATGACTGGTTCTTTTAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TTTTGCTATACGGAAACAAAGCATAAAAGTATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAAAATATCACTCATATTAATACGACTATATCTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CTGTCTCTGTGTAAGTCCCACCTTCTGGTAATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGATAATATATAAGGTTTTCATCTTAGCGTTA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TATCTCATATAATGCATATAATACTATATTTAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAATGCTTTTGGGTCTATATTGTTACTCTTAAAAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGGCTCTATCTATATAATCTTTTTTGAGCCAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCAAACAAAATCACTATTTTATGTGGATGTGG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCAATTTCCCGTACAGTAAATCCTTTACCGTACAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CAGTCGGAACATCACCATTATTAATCACATCAAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TACAATACACGTATTATTTAGATTACAATCGTTT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AATCATTGACCTATTTCCTCCTTAATAAAACAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGATAAATTATATTGTTTTCCATTACATCTTTT
GTCGCACTTCACGCAGGTGCGTGGATTGAAAT	CCTGTATGCATTAGGTGTCCTTTTATTATCAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCTGAATTATTTTCGAGGTGTTAATGGATAGAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAGGCTCACCATTAAATTTTAATTACTTTATG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGTAAAGTAGCATATTCTAAGGGAAATAAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT

>NZ_CP008713|2|2|738019-739498|CRISPRCasFinder
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATTCGTTCTCCATAAATGCATAACAACCAACAC
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AAAGAGAGCCTGATAATGAAGGTTTGACTTATTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCTTCTTTGCCTAATTTCTGCATACTCCGAAACTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	GCAAAAAATCACAAATATGACTGGTTCTTTTAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TTTTGCTATACGGAAACAAAGCATAAAAGTATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAAAATATCACTCATATTAATACGACTATATCTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CTGTCTCTGTGTAAGTCCCACCTTCTGGTAATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGATAATATATAAGGTTTTCATCTTAGCGTTA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TATCTCATATAATGCATATAATACTATATTTAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAATGCTTTTGGGTCTATATTGTTACTCTTAAAAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGGCTCTATCTATATAATCTTTTTTGAGCCAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCAAACAAAATCACTATTTTATGTGGATGTGG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCAATTTCCCGTACAGTAAATCCTTTACCGTACAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CAGTCGGAACATCACCATTATTAATCACATCAAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TACAATACACGTATTATTTAGATTACAATCGTTT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AATCATTGACCTATTTCCTCCTTAATAAAACAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGATAAATTATATTGTTTTCCATTACATCTTTT
GTCGCACTTCACGCAGGTGCGTGGATTGAAAT	CCTGTATGCATTAGGTGTCCTTTTATTATCAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCTGAATTATTTTCGAGGTGTTAATGGATAGAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAGGCTCACCATTAAATTTTAATTACTTTATG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGTAAAGTAGCATATTCTAAGGGAAATAAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTAACCATTCAACAGGTGTATCAAGATAAGTATTAT
GTCGCATCTCACGCAGGTGCGTGGATTGAGAA

>NZ_CP008713|2|2|738019-739498|CRT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATTCGTTCTCCATAAATGCATAACAACCAACAC
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AAAGAGAGCCTGATAATGAAGGTTTGACTTATTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCTTCTTTGCCTAATTTCTGCATACTCCGAAACTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	GCAAAAAATCACAAATATGACTGGTTCTTTTAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TTTTGCTATACGGAAACAAAGCATAAAAGTATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAAAATATCACTCATATTAATACGACTATATCTG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CTGTCTCTGTGTAAGTCCCACCTTCTGGTAATA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGATAATATATAAGGTTTTCATCTTAGCGTTA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TATCTCATATAATGCATATAATACTATATTTAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TAATGCTTTTGGGTCTATATTGTTACTCTTAAAAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCGGCTCTATCTATATAATCTTTTTTGAGCCAG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	ATCAAACAAAATCACTATTTTATGTGGATGTGG
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TCAATTTCCCGTACAGTAAATCCTTTACCGTACAA
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	CAGTCGGAACATCACCATTATTAATCACATCAAT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	TACAATACACGTATTATTTAGATTACAATCGTTT
GTCGCACCTTACGCAGGTGCGTGGATTGAAAT	AATCATTGACCTATTTCCTCCTTAATAAAACAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGATAAATTATATTGTTTTCCATTACATCTTTT
GTCGCACTTCACGCAGGTGCGTGGATTGAAAT	CCTGTATGCATTAGGTGTCCTTTTATTATCAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCTGAATTATTTTCGAGGTGTTAATGGATAGAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAGGCTCACCATTAAATTTTAATTACTTTATG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGTAAAGTAGCATATTCTAAGGGAAATAAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTAACCATTCAACAGGTGTATCAAGATAAGTATTAT
GTCGCATCTCACGCAGGTGCGTGGATTGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008713.1\|WP_042294562.1\|733159_734995_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP008713.1\|WP_042294559.1\|729161_730091_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP008713.1\|WP_005806407.1\|728760_729156_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP008713.1\|WP_042294569.1\|744539_745274_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377915
NZ_CP008713.1\|WP_005806383.1\|740678_740852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_042294560.1\|730233_732465_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP008713.1\|WP_042294571.1\|745332_745758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_005806373.1\|746017_746350_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|368695
NZ_CP008713.1\|WP_042294572.1\|747718_748324_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_041568929.1\|735874_736516_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP008713.1\|WP_005806409.1\|727235_728741_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP008713.1\|WP_005806398.1\|734997_735861_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP008713.1\|WP_042294566.1\|740194_740620_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP008713.1\|WP_042294568.1\|743062_744478_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP008713.1\|WP_052341889.1\|746575_747700_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP008713.1\|WP_042294564.1\|736516_737545_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP008713.1\|WP_005806392.1\|737557_737848_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP008713.1\|WP_005806402.1\|732482_733163_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP008713.1\|WP_005806369.1\|748362_748704_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008713.1\|WP_042294565.1\|739569_739938_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424

Protein	Function_ID	Function_description	E-value
NZ_CP008713.1\|WP_042294562.1\|733159_734995_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.68018e-178
NZ_CP008713.1\|WP_042294559.1\|729161_730091_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.99918e-133
NZ_CP008713.1\|WP_005806407.1\|728760_729156_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	5.43277e-72
NZ_CP008713.1\|WP_042294569.1\|744539_745274_-\|DUF1624-domain-containing-protein	gnl\|CDD\|377915	pfam07786, DUF1624, Protein of unknown function (DUF1624). These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.	2.10068e-33
NZ_CP008713.1\|WP_042294560.1\|730233_732465_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.44956e-56
NZ_CP008713.1\|WP_052341889.1\|746575_747700_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	9.39738e-13
NZ_CP008713.1\|WP_005806373.1\|746017_746350_+\|DUF898-family-protein	gnl\|CDD\|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	1.01089e-08
NZ_CP008713.1\|WP_041568929.1\|735874_736516_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.28316e-26
NZ_CP008713.1\|WP_005806409.1\|727235_728741_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP008713.1\|WP_005806398.1\|734997_735861_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.07265e-150
NZ_CP008713.1\|WP_042294566.1\|740194_740620_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	3.778e-11
NZ_CP008713.1\|WP_042294568.1\|743062_744478_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP008713.1\|WP_042294564.1\|736516_737545_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	9.54175e-176
NZ_CP008713.1\|WP_005806392.1\|737557_737848_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.23161e-25
NZ_CP008713.1\|WP_005806402.1\|732482_733163_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.27739e-104
NZ_CP008713.1\|WP_042294565.1\|739569_739938_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	0.00484599

>NZ_CP008713.1|WP_005806392.1|737557_737848_+|CRISPR-associated-endonuclease-Cas2
MLILVTYDVGLNFDDGAKRLRKVSKICENYGIRVQNSVFECVVDNLQFEMLKSDIDKVIDKERDSVRYYNLGNSGRKKVIHIGNKHSIDVEDVIII
>NZ_CP008713.1|WP_042294564.1|736516_737545_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNVLYVTNEDAYLSKDGEDISIRISDQKPIKIPSHNLEGIVCFGYQGASTKLMAMCAEKNIGMSFHTPFGKFLCRVQGRVSGNILLRKKQYKISDDENKSCLIAKNFIIGKLVNYKNVLNRFKRDYRDKFDENMRRSIEYLSDTIKSVSKSEDLNSLRGLEGIGSKYYFDVFDNLILVDNKSFRFDSRNKRPPLDRVNALLSFVYVILSHDIESSLESVGLDPQAGFLHRDRPGRSGLALDMMEELRSYLCDRFVLKLINTRVIKENDFIVKENGSVFILEDARKNILTAWQKRKKDFIIHPFLNEKIEVGLIPYVQSLLLARYLRGDLEEYPPYLMK
>NZ_CP008713.1|WP_041568929.1|735874_736516_+|CRISPR-associated-protein-Cas4
MISGIQHFIFCPRQWALIHIEQIWEDNVRTFNGHKFHKKVDDPYIFEKRGEIIISRSLPLISHKLSVKGISDCVEFHMRNDNLGAKLVGRNGSYDVIPIEYKVGDIKKDDSDISQLCIQAICLEEMFDTTIEKGYLYYGKLRRRVEVNFTNELRENIKELVEKMRYYFDNGVTPKARYKKQCINCSLYDICLPKLNCSYSKVKNYIDSYVEDI
>NZ_CP008713.1|WP_005806398.1|734997_735861_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLLSKRYEFVILFDVENGNPNGDPDSGNMPRIDPETGHGIVTDVCIKRKIRNYIEVVEGERQGFDIYVKNGAVLNEQHRKAYEAFELKPENKKLPKDEKLAKELTGYMCKNFYDIRSFGAVMSNEVNCGQVRGPIQLNFGRSIDPIFSQDLTITRCAVTNMKDLEKGQTMGRKQIVPYALYRMEGYVSAHLAQKVTGFNEEDLNILWQAIINMFEYDRSASHGKMATRKLYVFEHETALGNAPSHKLFDLIEVERKDKSKPSRHFNDYEISIDRDSLPKGVDLIEKL
>NZ_CP008713.1|WP_042294562.1|733159_734995_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKELVDCYDLMVNSDKFEVSDSNFSNEKVSFKITIDEDGLITKIIDLREGSGAKKKTILVNVPYQSGRTSGIKPYFLCDNAKYFFGYEIDSKSLELKRCDQHIEASKNLHMEILENSYSKYKLILERFFDNHDKNLEIIKEKDPEVLKGGSIILRLKDDMKCIHEQGEVKKAFALYRQNKFENVEEVRGTCLINGDSNAPIAKIHKTIKGVSGSSISGAMIVSFNASSFESYGKSQGYNASISTENEFKYTTALNKLLSTDDNNMYLSGNTIVFWSSKLGAEEEQIIPAFMKDDDEVEDDNGETGGAKYNQEGVDKIESIIKLIKQGKTVNVDRINLDDSVNMYVLGLYGSRSRIFVRFWFKNSLEDFIKLTNKHFEDTKLKKKRKFSKKDFIYEEVGVKLSSILKTITPYGKSQNTPKTLINSLFKSILTGGVYPISIYNKILERIRAESGEDFAINHTRISFIKGYLKRYYRLNNLKDKEEEVTVSLNKESTNIAYNLGRIFAILEKIQMDSSNGATNIREKYLSSASSTPKSIFPNLLNLAQYHIAKINKENNTKFNYYDKVIGEILLNVNEFPAVFSSDEQGMFILGYYHQREDIYTSKKDKEEN
>NZ_CP008713.1|WP_005806402.1|732482_733163_+|type-I-C-CRISPR-associated-protein-Cas5
MGFTLRVWGDYACFTRPEMKVERVSYDVITPSAARAIFEAIHWKPAIRWVIDEINVIKPIKFQTIMRNEVESVMSTQSIKKSINNKEEQFYIDSNKVRQQRNSMVLKDVEYIIKAHFEMTKHAGGSDDEKKHYNIFLRRARNGECFSQPYFGCREFSCNFELLENEDLPLNIQETRDLGWMLYDIDFVKKGDSYKGVKEYNPKFFRAEMIKGKVTIPKNLQMEVNK
>NZ_CP008713.1|WP_042294560.1|730233_732465_+|CRISPR-associated-helicase/endonuclease-Cas3
MKYTEKLARRIEKEDGKIEYQKLIDHICGVSEFSEEFVSKFFLKNSGKILSILHDLGKYSDEFQDRIRGANIRVDHSTAGAIICDDLEKEFKGRGEYVIYKIFKYIIIGHHSGLLNYGTEMDDEGTISSRLNKRDILCDFSDWENEISIDDIKQINFSEEVLGFFKNNFSVQMLIRFLFSSLVDSDRLDAQRFIEGENSIVNSKKLMSLEEMLNVFNDFMKSKRLQESDNPINLIRNEIFNDCINKSRGDRGFYSLCVPTGGGKTLSSLGFALNHAKQNGHDRIIYSLPFTSIIEQNARVYSEIFGEENVLEHHCNFSFSNEIGEDEYSENQLKYKLAIENWDMQLIVTTNVQLFESMYSNKPSSARKLHNIYNSIIILDEAQVIPNEYLKPCIKALEELVRNYSCTVLFCTATQPEFKKNGLIENFDVVEIIDDTYKLFDDLKRVSGKFIGKKSVEDICNEMNSHKQVLTIVNTKKHAKEIFENLGDSEGNFHLSTNMYPNHRKEVIKIIRERLKNGEECRVVSTQLIEAGVDVDFPVVFRSIAGIDSIVQAAGRCNREGKQKNSTVYVFKPEEESHLGLGYLKLTSQIGEGIIDDFEDFLSIDAISKYFFELFIDTDHRQDKHKILKMINKHKKLEINYDFREINDEFRFIENLGAQVIVPINEGEKFLNILKYSNRGVKSVLRKLSGCSINIPNYILRELLRDGCVEQFSDDIFILKNIGMYDLKIGFDKDNLKNYEYII
>NZ_CP008713.1|WP_042294559.1|729161_730091_-|ribokinase
MNKVCILGSLNMDLVLKVNDIPKIGETILSNSSEKIAGGKGANQAIAAKRCGADVSMIAKIGKDENGRILKGKLKEDGIDVSCIFEDEQNPTGLALIMVNKNGNNSIIVVPGSNMKINDSEINKSISKIKESDILIAQFETNEEMTLKSFQKAKEFNKITILNPAPAKKIDIELLKLTDIIIPNETEAEVLTGIKITSIDDAKRAGKFFINQGVKFAIITLGENGALIIGNDFYELVKSFKVNAVDTTAAGDSFIGALSSKLNFKNLTRETLKESVYFGNKVSSITVQRKGAQPSIPYLEEVKKIYKEN
>NZ_CP008713.1|WP_005806407.1|728760_729156_-|D-ribose-pyranase
MKKTCLLNNSISSVISKMGHTDMIAIGDCGLPIPKETKRIDLALTKGIPSFLDTLKTTLTELEIEEIIIAKETEETSPKIFNEIKNLIGNAKITFVSHEIFKTNLKECKAVIRTGEQTPYANIILKSGVVF
>NZ_CP008713.1|WP_005806409.1|727235_728741_-|sugar-ABC-transporter-ATP-binding-protein
MNTRIPMLKMEGVSKIFPGVKALDNINITAYKGEVTALMGENGAGKSTLMKILSGVYQKDEGKIFIEGEEAHIKNIKSAEEYGVTIIHQEMSLINNLTIAENIFLGNEKFNKFTKKINKKLLVERSILFLDQIGCNLDPNKLVSSINVGEKQMVEIAKALTKNARIIIMDEPTTALTKIETQNLFKVIENLKKKGIAIIYISHRMEEIFAICDRVEVLRDGKYAGNALIKEIDNNKLIAMMVGRTIEEQFPYKKIEKGKVLLEVSNLTSKVGINNISFTVREGEIVGIAGLMGAGRTELAKTIFGYYKKEKGTIKLKGKRINIKNIQQAINNGICYLSEDRKKEGCILGLSVEDNMILSNLCKYENGFKIINKNKTKKDIDFYIKKLNIKTPNKDQLIKNLSGGNQQKVILAKWLLLSPDILIIDEPTRGIDVGAKKEIYELLNELKESGKAIIMISSDLPEVLGISDRILVMSEGKITGELNREEATQEKIMKLSVGINQ
>NZ_CP008713.1|WP_042294565.1|739569_739938_+|DUF2442-domain-containing-protein
MDKKIKYYLDRGMDYDMAKYFATAERTIIEVIPNNDYTLTLKFDNDEIRKYDCNDLIEKGTVFEFLSDYYNFKRVYLDESNVVSWDKDPNIDSNLNWSNKVDLSSDTLYVKSIPQDLGKMKL
>NZ_CP008713.1|WP_042294566.1|740194_740620_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MIVSYPAVFYKYQEGNYGVSLPDFNVATCGEDLEDAIKMAIECLAGEIKWCKEQGEEIPKPTLDLDLVEVDERDEENNYVEFIKQIITVDADEYAKKYFNKSVKKNLTIPKWLNDEAVALNINFSKVLQKALLDEINRLKD
>NZ_CP008713.1|WP_005806383.1|740678_740852_+|hypothetical-protein
MKSCIALFYLILKTLLALTIFSFTGFGTYNFGINDIRVVQALTIYYIIRVNLYILNK
>NZ_CP008713.1|WP_042294568.1|743062_744478_+|glycoside-hydrolase-family-1-protein
MKQKFPENFLWGASSSAFQIEGGWDEDGKGKTVADFNSFKRSDKQADTKVASDFYHHWKEDIAMMKELGMQIYRFSLSWARIVPDGDGDINAAGIDFYNKLIDELIANGIQPFVTLYHFDLPYALVEKYNGWECRNCAFAFERYARVCFKEFGDRVKYWQVINEQNLMIRVNERMNIYVDDLWEADRIRAQMDYHMFLGHALAVNSCHELVEGGKVGPAVSSTCTYPLTNKPEDVWAAKMNDWLKTNYCLEMHINGEYPGYYMRYLRERNIVPKMEPEDVPILKSAKIDYIALNYYRTLCASYLPASEEHPIGERVYRDNEVDFDQYGYCRNEKNANLSASEYGAQIDPMGLRIVLNEYYRRYHLPMIITENGLGMADVLTEDGKVHDSYRIDYIRSHIQACANAIEDGVELIGYSPWSVMDLLSSHQGFRKRYGFIYVDRDDFDVKQLRRIKKDSFYWYKHVIETNGEEL
>NZ_CP008713.1|WP_042294569.1|744539_745274_-|DUF1624-domain-containing-protein
MNEKRYFILDGIRGFAVINMIIYHFIWDLVYIFRFDIPWFESEISYIWQQFICCTFIFISGFCEPLGTRKLKRGIIILGLGILIEIVTMIATPENRVRFGILTLLGSCAILIIPAKKFLEKFPSIFGLILSIALFLLTKNINDGYLGFNNLNLIKLPSNLYKNSITTYLGFPMPNFYSTDYFSLMPWIFLYISGYFSYQIFKRQGLLKYLKISKIKSLEWIGRNSLALYVIHQPLIYFLIILFL
>NZ_CP008713.1|WP_042294571.1|745332_745758_-|hypothetical-protein
MNTLRKIIKNTIIACIPFTILSTINANSSPLRRSKSLPNITFNNXFNENFRKFFEFGQPIMTTRTSASVSNLNDTDDFQKLRNEMVFSNNARAMQNGIFPRPMWKLYLDGSDFVDTYTGLKMPRVNNANISNATKVQYFFE
>NZ_CP008713.1|WP_005806373.1|746017_746350_+|DUF898-family-protein
MRPWYFEESEFDGKLAELLGINILSFLLIIVTLGIGFSWAMCMKEKYRINHTIINGQRLSFVGRGGDLFVNWLKWILLTIITLGIYGFLLSIKLRQWKVRNTIFDSYKVG
>NZ_CP008713.1|WP_052341889.1|746575_747700_+|HNH-endonuclease
MESLIEFLYSYKGMLVSIFITPIILFLMHQLYKYGCHKEKYPKVNLDKMNGKGIKFCVWGYTVWIVIIMPLGLLASLILFSIWKIYENSYYKSIKFKIIKKELSDYVTNCHELNEHIEELKDSYSGIEKKNYGRAEIEDNSRYNYKGAKQVDQKSKFTYDCSIAIYRAAEQQPFKYLCKYFNIDSTEESLEKFEDLLNKFSAAEEGKVVLNNELERIKRSLKNRKDIPFLINFLGMEKFIKEIGIIQRVDFNDLYFPVYTFRYRSPGGNKSSLCKIKLDIENLNEFVEYLSELVNFRKSVAGQRALMTSKLRESIKQRDNYTCKQCGLSTYDEPNLLLEIDHIVPISKGGLSTEENLQTLCWKCNRTKGAKLVS
>NZ_CP008713.1|WP_042294572.1|747718_748324_+|hypothetical-protein
MLRKLLIMMFIVAGIGVSTVSCGSNNNTNSTSNVMNNQDSTNVEDKVSEPKKEDKKDMTSAELDEALNNQPVKIIRTEYISQEDQFLRPDLLSAVFQNDSGVDIKNAVLGYVAWDSNNLPVKIQSQYDFTDGEYFKKVNYSDVNLVNGASYGENGGLSIGNDNIAKFKAIVVSYTDFDGNIWDNPLLEEFKKLYEDKKLAE
>NZ_CP008713.1|WP_005806369.1|748362_748704_+|hypothetical-protein
MKRSKLLLVSAILSTLYLIYIFIYFFNGISSSSNGAEALGVGLAGVLVAPHILFVGLGVLFNWIGWGMNKRWAALVSGILYFVSIFLMILYAIFVIVQVILCFVGYAKMKKEG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008713_2	2.11\|738708\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738708-738741	34	NC_019507	Campylobacter phage CP21, complete genome	33170-33203	7	0.794
NZ_CP008713_2	2.11\|738708\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738708-738741	34	MT932329	Campylobacter phage F379, complete genome	100334-100367	7	0.794
NZ_CP008713_2	2.11\|738708\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738708-738741	34	HE815464	Campylobacter phage CP21 complete sequence	33170-33203	7	0.794
NZ_CP008713_2	2.4\|738249\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738249-738281	33	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	196199-196231	8	0.758
NZ_CP008713_2	2.9\|738576\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738576-738608	33	MT774394	CrAssphage cr271_1, complete genome	82022-82054	8	0.758
NZ_CP008713_2	2.14\|738906\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738906-738939	34	KX017520	Salmonella phage 64795_sal3, complete genome	37898-37931	8	0.765
NZ_CP008713_2	2.4\|738249\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738249-738281	33	NZ_CP053907	Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence	60256-60288	9	0.727
NZ_CP008713_2	2.9\|738576\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738576-738608	33	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	172855-172887	9	0.727
NZ_CP008713_2	2.20\|739301\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	739301-739333	33	MK250029	Prevotella phage Lak-C1, complete genome	178327-178359	9	0.727
NZ_CP008713_2	2.14\|738906\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738906-738939	34	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	598489-598522	10	0.706
NZ_CP008713_2	2.14\|738906\|34\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	738906-738939	34	NZ_CP013167	Lactobacillus plantarum strain MF1298 plasmid pMF1298-12, complete sequence	1184-1217	10	0.706
NZ_CP008713_2	2.20\|739301\|33\|NZ_CP008713\|PILER-CR,CRISPRCasFinder,CRT	739301-739333	33	NZ_AP018258	Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome	89683-89715	10	0.697

1. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***

2. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***

3. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***

4. spacer 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 8, identity: 0.758

gcaaaaaatcacaaatatgactggttc----ttttaa	CRISPR spacer
taaaaaaatcacaaatttgaatggttcaggatt----	Protospacer
  ************** *** ******    **

5. spacer 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MT774394 (CrAssphage cr271_1, complete genome) position: , mismatch: 8, identity: 0.758

tatctcatataatgcatataatactatatttat	CRISPR spacer
tttacaatataatgaatataatactatattacc	Protospacer
* * . ******** ***************  .

6. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to KX017520 (Salmonella phage 64795_sal3, complete genome) position: , mismatch: 8, identity: 0.765

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
catactgcgtatcaccattattaacaacatcaat	Protospacer
**  * * ..**************. ********

7. spacer 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053907 (Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaaaaatcacaaatatgactggttcttttaa	CRISPR spacer
gcaattaatcacaaatatgactggcgaacaaaa	Protospacer
****  ******************.   .  **

8. spacer 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.727

tatctcatataatgcatataatactatatttat	CRISPR spacer
atctttccataatgcatctagtactatatttat	Protospacer
  ..*. .********* **.************

9. spacer 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.727

tcaggctcaccattaaattttaattactttatg	CRISPR spacer
ctattcaaaccatttaattttaatttctttata	Protospacer
..*  *  ****** ********** ******.

10. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 10, identity: 0.706

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
cagccggaacatccccattattaacctttatgaa	Protospacer
***.********* **********.* .  ..*

11. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013167 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-12, complete sequence) position: , mismatch: 10, identity: 0.706

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
taagattatcatcaccatttttaatcacttcaac	Protospacer
.*.    * ********** ******** ****.

12. spacer 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018258 (Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome) position: , mismatch: 10, identity: 0.697

tcaggctcaccattaaattttaattactttatg	CRISPR spacer
cgcatggcgccatttatttttaattactttatg	Protospacer
.  .   *.***** * ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

111347 : 189910

Clostridium_phage(18.52%)

plate,holin,integrase,portal,capsid,head,terminase,protease,tail

attL 104807:104823|attR 134792:134808

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
104807:104823	attL	NA	NA	NA	NA
WP_042293981.1\|111347_112538_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	9.6e-101	49.9
WP_042293983.1\|112700_113192_+	hypothetical protein	NA	NA	NA	NA
WP_144238980.1\|113242_113779_+	hypothetical protein	NA	NA	NA	NA
WP_042293986.1\|113738_114674_+	hypothetical protein	NA	NA	NA	NA
WP_042293988.1\|114848_115100_-	peptidase S24	Q4ZCB4	Staphylococcus_virus	1.6e-05	35.3
WP_005807572.1\|115440_116175_+	DUF3644 domain-containing protein	A0A220NQR4	Corynebacterium_phage	1.1e-17	35.8
WP_081832567.1\|116912_117626_-	helix-turn-helix domain-containing protein	A0A1B2APZ3	Phage_Wrath	5.5e-19	31.4
WP_042293990.1\|117765_117969_+	DUF739 family protein	NA	NA	NA	NA
WP_005807562.1\|118087_118303_-	helix-turn-helix transcriptional regulator	A0A1L2JY18	Aeribacillus_phage	3.8e-08	44.1
WP_042293992.1\|118421_118622_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005807558.1\|118666_118885_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005807556.1\|118889_119069_+	hypothetical protein	NA	NA	NA	NA
WP_042293996.1\|119155_119422_+	hypothetical protein	NA	NA	NA	NA
WP_042293999.1\|119438_119738_+	hypothetical protein	NA	NA	NA	NA
WP_042294001.1\|119737_120874_+	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	2.8e-97	48.2
WP_042294002.1\|120889_121450_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	1.8e-57	61.2
WP_042294004.1\|121449_123369_+	DNA polymerase	S5M5X4	Brevibacillus_phage	5.2e-189	54.2
WP_042294005.1\|123384_125889_+	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	2.8e-198	44.8
WP_042294007.1\|126182_126491_+	VRR-NUC domain-containing protein	A0A1W6JQA8	Corynebacterium_phage	3.6e-15	43.8
WP_042294010.1\|126442_127783_+	DEAD/DEAH box helicase family protein	M9QRT1	Staphylococcus_phage	8.8e-135	52.2
WP_042294011.1\|127795_128221_+	hypothetical protein	NA	NA	NA	NA
WP_042294014.1\|128207_128423_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042294019.1\|128689_128887_+	type II toxin-antitoxin system HicA family toxin	A0A0C5AC70	Paenibacillus_phage	1.8e-12	57.9
WP_042294021.1\|129020_129467_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CYJ8	Paenibacillus_phage	1.0e-15	37.8
WP_042295220.1\|129562_129787_+	DUF3310 domain-containing protein	A0A249XUN0	Enterococcus_phage	3.4e-07	39.4
WP_042294023.1\|129978_130458_+	hypothetical protein	NA	NA	NA	NA
WP_052341879.1\|130450_132229_+\|terminase	phage terminase large subunit family protein	A0A0C5ABH4	Bacteriophage	8.7e-122	43.5
WP_173400382.1\|132276_132474_+	hypothetical protein	NA	NA	NA	NA
WP_042294026.1\|132482_134036_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	2.6e-122	45.4
WP_052341881.1\|134036_135035_+\|protease	Clp protease ClpP	A6M950	Geobacillus_virus	4.7e-32	42.9
134792:134808	attR	NA	NA	NA	NA
WP_052341882.1\|135034_135397_+\|head	head decoration protein	A0A067ZIL6	Vibrio_phage	2.7e-06	29.1
WP_042294027.1\|135399_136530_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	4.2e-37	32.5
WP_042294030.1\|136530_136776_+	hypothetical protein	NA	NA	NA	NA
WP_042294032.1\|136775_137348_+\|tail	phage tail protein	NA	NA	NA	NA
WP_042294034.1\|137340_137667_+	hypothetical protein	NA	NA	NA	NA
WP_052341883.1\|137813_138737_+	hypothetical protein	NA	NA	NA	NA
WP_042294036.1\|138720_138966_+	hypothetical protein	NA	NA	NA	NA
WP_042294038.1\|138953_140693_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_042294040.1\|140702_141236_+	hypothetical protein	NA	NA	NA	NA
WP_042294042.1\|141246_142695_+	hypothetical protein	A0A0C5AEE8	Bacteriophage	3.1e-45	28.7
WP_042294044.1\|142697_143216_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_042294046.1\|143224_143605_+	hypothetical protein	NA	NA	NA	NA
WP_042294048.1\|143601_143934_+	hypothetical protein	NA	NA	NA	NA
WP_042294050.1\|144261_147228_+\|tail	phage tail tape measure protein	H8YJ81	Vibrio_phage	8.7e-26	24.7
WP_052341884.1\|147217_147475_+	hypothetical protein	NA	NA	NA	NA
WP_042294052.1\|147477_148401_+	hypothetical protein	NA	NA	NA	NA
WP_042294055.1\|148400_148607_+	hypothetical protein	NA	NA	NA	NA
WP_042294057.1\|148596_149049_+\|tail	phage tail protein	NA	NA	NA	NA
WP_042294060.1\|149053_149332_+	hypothetical protein	NA	NA	NA	NA
WP_052341885.1\|149333_150425_+\|plate	baseplate J/gp47 family protein	A0A067ZJB4	Vibrio_phage	4.0e-53	35.1
WP_042294063.1\|150421_151138_+	hypothetical protein	NA	NA	NA	NA
WP_042294066.1\|151124_151889_+	hypothetical protein	NA	NA	NA	NA
WP_042294068.1\|151893_152739_+	hypothetical protein	NA	NA	NA	NA
WP_042294070.1\|152738_154451_+\|tail	phage tail protein	A0A0C5AEQ0	Bacteriophage	4.0e-15	36.6
WP_042294072.1\|154636_155068_+\|holin	phage holin family protein	D2XPZ9	Bacillus_virus	1.2e-05	30.2
WP_042294074.1\|155254_155917_+	N-acetylmuramoyl-L-alanine amidase	A0A0A8WI59	Clostridium_phage	2.3e-27	40.4
WP_042294077.1\|156360_157893_+	hypothetical protein	NA	NA	NA	NA
WP_040054030.1\|158151_158655_+	signal peptidase I	NA	NA	NA	NA
WP_005807454.1\|158736_160824_+	AAA family ATPase	NA	NA	NA	NA
WP_005807452.1\|160820_161807_-	hypothetical protein	NA	NA	NA	NA
WP_042294078.1\|161879_163052_-	cation transporter	NA	NA	NA	NA
WP_005807447.1\|163199_164399_+	aspartate kinase	NA	NA	NA	NA
WP_005807445.1\|164413_165694_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_005807444.1\|165761_166901_+	hypothetical protein	NA	NA	NA	NA
WP_005807442.1\|166922_168203_+	M18 family aminopeptidase	NA	NA	NA	NA
WP_005807440.1\|168215_168701_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005807438.1\|168714_169446_-	pseudouridine synthase	NA	NA	NA	NA
WP_005807437.1\|169494_170430_-	hypothetical protein	NA	NA	NA	NA
WP_005807435.1\|170683_171436_+	DUF3298 and DUF4163 domain-containing protein	NA	NA	NA	NA
WP_081467327.1\|171561_171849_+	hypothetical protein	M1PLC0	Streptococcus_phage	3.9e-08	33.3
WP_042294084.1\|171868_172498_-	hypothetical protein	NA	NA	NA	NA
WP_005807428.1\|172597_172957_-	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_042294086.1\|173105_173954_+	YitT family protein	NA	NA	NA	NA
WP_042294088.1\|174262_175138_+	hypothetical protein	NA	NA	NA	NA
WP_005807422.1\|175319_175484_+	hypothetical protein	NA	NA	NA	NA
WP_005807420.1\|175527_176424_+	hypothetical protein	NA	NA	NA	NA
WP_042294089.1\|176445_177360_+	hypothetical protein	NA	NA	NA	NA
WP_042294090.1\|177434_178442_+	hypothetical protein	NA	NA	NA	NA
WP_005807414.1\|178624_179944_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014017815.1\|179940_180600_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-17	29.1
WP_007441790.1\|180623_181832_+	ABC transporter permease	NA	NA	NA	NA
WP_005807409.1\|181824_182337_+	hypothetical protein	NA	NA	NA	NA
WP_005807407.1\|182414_183497_+	hypothetical protein	NA	NA	NA	NA
WP_005807405.1\|183505_183919_-	hypothetical protein	NA	NA	NA	NA
WP_007441789.1\|188998_189910_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

771907 : 842779

Clostridium_phage(32.43%)

plate,holin,tRNA,capsid,portal,integrase,head,terminase,protease,tail

attL 807141:807200|attR 841315:841402

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005806325.1\|771907_772948_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_005806324.1\|772978_774028_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_042294587.1\|774083_778277_+	PolC-type DNA polymerase III	A0A1X9I5C8	Streptococcus_phage	1.8e-24	33.6
WP_005806320.1\|778626_779088_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_005806318.1\|779098_780259_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_005806317.1\|780248_780518_+	YlxR family protein	NA	NA	NA	NA
WP_042294588.1\|780543_782688_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	6.7e-28	25.6
WP_005806313.1\|782709_783066_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_007445250.1\|783058_784018_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_005806310.1\|784014_784914_+\|tRNA	tRNA pseudouridine(55) synthase TruB	E3T4J1	Cafeteria_roenbergensis_virus	3.4e-05	34.5
WP_005806307.1\|784900_785824_+	bifunctional riboflavin kinase/FAD synthetase	A0A1V0SD03	Indivirus	2.6e-05	30.6
WP_040054077.1\|785927_786191_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_005806304.1\|786273_788388_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_042294589.1\|788508_788796_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_042294590.1\|788820_790020_+	aspartate kinase	NA	NA	NA	NA
WP_005806299.1\|790133_790934_+\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_042294591.1\|791044_793321_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.4e-86	48.2
WP_173400384.1\|793349_794666_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_042294593.1\|794665_795235_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_042294594.1\|795237_796311_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.8e-120	64.2
WP_005806283.1\|796488_798063_+	ribonuclease Y	NA	NA	NA	NA
WP_007440222.1\|798191_798452_+	stage V sporulation protein S	A0A1J0GVV0	Streptomyces_phage	3.6e-08	39.2
WP_005806279.1\|798552_798813_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_042294596.1\|799526_800468_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	7.8e-13	29.8
WP_042294597.1\|800487_801759_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_042294598.1\|801771_802692_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_042294599.1\|802694_804524_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	6.7e-77	34.4
WP_005806266.1\|804580_807142_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.4e-48	29.3
WP_042294600.1\|807138_808068_-	transcriptional regulator	NA	NA	NA	NA
807141:807200	attL	NA	NA	NA	NA
WP_042294601.1\|808222_809017_+	hypothetical protein	NA	NA	NA	NA
WP_052341890.1\|809179_809527_+	hypothetical protein	NA	NA	NA	NA
WP_042294602.1\|809575_809989_+	hypothetical protein	NA	NA	NA	NA
WP_158336021.1\|809991_810162_+	hypothetical protein	NA	NA	NA	NA
WP_042294603.1\|810523_811150_+	Ltp family lipoprotein	NA	NA	NA	NA
WP_042294604.1\|811297_812212_+	hypothetical protein	NA	NA	NA	NA
WP_042295270.1\|812293_812950_-	N-acetylmuramoyl-L-alanine amidase	A0A0A8WI59	Clostridium_phage	1.6e-28	42.3
WP_042294605.1\|813053_813485_-\|holin	phage holin family protein	D2XPZ9	Bacillus_virus	3.2e-06	30.2
WP_042294606.1\|813713_814850_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_158336022.1\|814995_815139_-	hypothetical protein	NA	NA	NA	NA
WP_042294607.1\|815144_815429_-	hypothetical protein	NA	NA	NA	NA
WP_042294608.1\|815425_817567_-	hypothetical protein	H7BUY5	unidentified_phage	6.1e-13	30.5
WP_042294609.1\|817591_818263_-	hypothetical protein	NA	NA	NA	NA
WP_042294610.1\|818255_819050_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_042294611.1\|819030_820089_-\|plate	baseplate J/gp47 family protein	A0A0A7RVT9	Clostridium_phage	4.5e-33	29.0
WP_042294612.1\|820081_820504_-	DUF2634 domain-containing protein	A0A1V0DZX2	Clostridioides_phage	4.7e-18	43.1
WP_158336023.1\|820500_820869_-	DUF2577 family protein	NA	NA	NA	NA
WP_042294614.1\|820873_821842_-	hypothetical protein	A0A1V0DZX6	Clostridioides_phage	3.6e-29	29.3
WP_042294615.1\|821838_822447_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2SUI2	Clostridium_phage	8.0e-19	29.5
WP_052341891.1\|822436_825034_-\|tail	phage tail tape measure protein	E2ELJ5	Clostridium_phage	6.6e-78	44.9
WP_052341892.1\|825182_825569_-	hypothetical protein	NA	NA	NA	NA
WP_042294616.1\|825571_826012_-\|tail	phage tail tube protein	A0A0A8WF55	Clostridium_phage	1.7e-26	47.0
WP_042294617.1\|826023_827079_-	hypothetical protein	A0A0A8WJL8	Clostridium_phage	2.2e-64	40.0
WP_042294618.1\|827275_827680_-	hypothetical protein	A0A0A8WFN4	Clostridium_phage	1.3e-09	32.4
WP_081832587.1\|827681_828053_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_052341893.1\|828042_828381_-\|head	phage head closure protein	A0A0A8WI51	Clostridium_phage	7.1e-09	46.0
WP_042294620.1\|828370_828655_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	8.1e-14	42.4
WP_042294621.1\|828657_829473_-	hypothetical protein	A0A0K2CZ99	Paenibacillus_phage	7.0e-34	35.0
WP_042294622.1\|829459_830596_-\|capsid	phage major capsid protein	A0A1B1P7R4	Bacillus_phage	3.6e-73	41.1
WP_052341894.1\|830588_831212_-\|head,protease	HK97 family phage prohead protease	E2ELI4	Clostridium_phage	8.5e-24	34.6
WP_144238982.1\|831213_832443_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	1.4e-38	30.3
WP_042294624.1\|832453_834133_-\|terminase	terminase large subunit	A6M948	Geobacillus_virus	3.4e-152	49.5
WP_042294625.1\|834129_834618_-\|terminase	phage terminase small subunit P27 family	H0USW2	Bacillus_phage	9.9e-20	38.8
WP_042294626.1\|834732_834978_-	helix-turn-helix transcriptional regulator	A0A2K9V426	Faecalibacterium_phage	8.2e-07	44.4
WP_052341904.1\|834979_835345_-	HNH endonuclease	Q8SBK4	Clostridium_phage	6.1e-22	40.8
WP_042295279.1\|835328_835568_-	DUF3310 domain-containing protein	A0A218MLR8	uncultured_virus	2.5e-08	50.8
WP_042294628.1\|835871_836582_-	DUF4065 domain-containing protein	M4SRU1	Rhodobacter_phage	3.7e-07	31.6
WP_052341896.1\|836610_837318_-	hypothetical protein	Q0H269	Geobacillus_phage	1.8e-17	31.6
WP_042294629.1\|837545_838091_-\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	5.1e-41	43.4
WP_042294630.1\|838087_839053_-	site-specific DNA-methyltransferase	Q58MT6	Prochlorococcus_phage	2.1e-21	28.7
WP_042294631.1\|839338_839740_-	hypothetical protein	NA	NA	NA	NA
WP_042294632.1\|840140_841205_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	6.3e-27	28.7
WP_005806264.1\|841435_842779_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
841315:841402	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1514473 : 1602119

100

Bacteriophage(14.71%)

plate,holin,tRNA,capsid,portal,integrase,head,terminase,tail,protease

attL 1563964:1563982|attR 1607752:1607770

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042295047.1\|1514473_1515898_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	1.5e-60	33.9
WP_005805109.1\|1515910_1516594_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_042295049.1\|1516713_1519152_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.8e-133	36.0
WP_042295051.1\|1519168_1520203_-	protein arginine kinase	NA	NA	NA	NA
WP_042295053.1\|1520203_1520737_-	UvrB/UvrC motif-containing protein	NA	NA	NA	NA
WP_005805105.1\|1520867_1521041_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_005805104.1\|1521150_1522020_-	stage 0 sporulation family protein	NA	NA	NA	NA
WP_042295055.1\|1522019_1522838_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_042295057.1\|1522843_1523491_-	thymidylate kinase	G3MB74	Bacillus_virus	1.4e-16	29.4
WP_005805101.1\|1523487_1524942_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_042295060.1\|1525021_1525954_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_042295062.1\|1526007_1526928_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_042295064.1\|1526992_1527871_-	hypothetical protein	NA	NA	NA	NA
WP_042295066.1\|1528104_1528911_+	hypothetical protein	NA	NA	NA	NA
WP_042295068.1\|1529002_1529563_+	hypothetical protein	NA	NA	NA	NA
WP_042295069.1\|1529562_1529745_+	hypothetical protein	NA	NA	NA	NA
WP_042295072.1\|1529769_1530171_+	hypothetical protein	NA	NA	NA	NA
WP_158336027.1\|1530176_1530347_+	hypothetical protein	NA	NA	NA	NA
WP_042295074.1\|1530362_1530593_+	hypothetical protein	NA	NA	NA	NA
WP_042295076.1\|1530623_1530935_+	hypothetical protein	NA	NA	NA	NA
WP_042295077.1\|1530953_1531301_+	hypothetical protein	NA	NA	NA	NA
WP_042295079.1\|1531381_1532569_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	1.1e-69	38.4
WP_042295082.1\|1532659_1533124_-	transcriptional regulator	NA	NA	NA	NA
WP_042295085.1\|1533503_1534733_+	type II toxin-antitoxin system RnlA family toxin	NA	NA	NA	NA
WP_042295086.1\|1534933_1535296_+	type II toxin-antitoxin system RnlB family antitoxin	NA	NA	NA	NA
WP_081832590.1\|1535296_1535467_-	DUF4214 domain-containing protein	NA	NA	NA	NA
WP_042295312.1\|1535499_1535916_-	SocA family protein	Q938J3	Temperate_phage	3.3e-16	37.4
WP_042295088.1\|1536739_1536991_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_042295090.1\|1537031_1537289_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_042295315.1\|1537296_1537533_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042295093.1\|1537538_1537787_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_042295318.1\|1537830_1538496_-	N-acetylmuramoyl-L-alanine amidase	A0A0A8WI59	Clostridium_phage	1.8e-27	40.3
WP_042295094.1\|1538601_1539033_-\|holin	phage holin family protein	D2XPZ9	Bacillus_virus	4.2e-06	30.2
WP_042294070.1\|1539222_1540935_-\|tail	phage tail protein	A0A0C5AEQ0	Bacteriophage	4.0e-15	36.6
WP_042295096.1\|1540934_1541780_-	hypothetical protein	NA	NA	NA	NA
WP_042294066.1\|1541784_1542549_-	hypothetical protein	NA	NA	NA	NA
WP_042294063.1\|1542535_1543252_-	hypothetical protein	NA	NA	NA	NA
WP_052341885.1\|1543248_1544340_-\|plate	baseplate J/gp47 family protein	A0A067ZJB4	Vibrio_phage	4.0e-53	35.1
WP_042294060.1\|1544341_1544620_-	hypothetical protein	NA	NA	NA	NA
WP_042294057.1\|1544624_1545077_-\|tail	phage tail protein	NA	NA	NA	NA
WP_042294055.1\|1545066_1545273_-	hypothetical protein	NA	NA	NA	NA
WP_042294052.1\|1545272_1546196_-	hypothetical protein	NA	NA	NA	NA
WP_052341884.1\|1546198_1546456_-	hypothetical protein	NA	NA	NA	NA
WP_042295098.1\|1546445_1549412_-\|tail	phage tail tape measure protein	H8YJ81	Vibrio_phage	8.7e-26	24.7
WP_042294048.1\|1549739_1550072_-	hypothetical protein	NA	NA	NA	NA
WP_042294046.1\|1550068_1550449_-	hypothetical protein	NA	NA	NA	NA
WP_042294044.1\|1550457_1550976_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_042295099.1\|1550978_1552427_-	hypothetical protein	A0A0C5AEE8	Bacteriophage	1.2e-44	28.5
WP_042294040.1\|1552437_1552971_-	hypothetical protein	NA	NA	NA	NA
WP_042294038.1\|1552980_1554720_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_042294036.1\|1554707_1554953_-	hypothetical protein	NA	NA	NA	NA
WP_052341883.1\|1554936_1555860_-	hypothetical protein	NA	NA	NA	NA
WP_042294034.1\|1556006_1556333_-	hypothetical protein	NA	NA	NA	NA
WP_042295101.1\|1556325_1556898_-\|tail	phage tail protein	NA	NA	NA	NA
WP_042295103.1\|1556897_1557143_-	hypothetical protein	NA	NA	NA	NA
WP_042295104.1\|1557143_1558274_-\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	7.1e-37	32.2
WP_052341882.1\|1558276_1558639_-\|head	head decoration protein	A0A067ZIL6	Vibrio_phage	2.7e-06	29.1
WP_052341881.1\|1558638_1559637_-\|protease	Clp protease ClpP	A6M950	Geobacillus_virus	4.7e-32	42.9
WP_042294026.1\|1559637_1561191_-\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	2.6e-122	45.4
WP_173400382.1\|1561199_1561397_-	hypothetical protein	NA	NA	NA	NA
WP_052341879.1\|1561444_1563223_-\|terminase	phage terminase large subunit family protein	A0A0C5ABH4	Bacteriophage	8.7e-122	43.5
WP_042294023.1\|1563215_1563695_-	hypothetical protein	NA	NA	NA	NA
1563964:1563982	attL	NA	NA	NA	NA
WP_052341900.1\|1564125_1564392_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042295106.1\|1564393_1564759_-	HNH endonuclease	Q8SBK4	Clostridium_phage	9.7e-20	37.5
WP_042295322.1\|1564742_1564967_-	DUF3310 domain-containing protein	A0A249XUN0	Enterococcus_phage	4.4e-07	39.4
WP_042295107.1\|1565062_1565509_-	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CYJ8	Paenibacillus_phage	1.4e-15	37.8
WP_042294019.1\|1565641_1565839_-	type II toxin-antitoxin system HicA family toxin	A0A0C5AC70	Paenibacillus_phage	1.8e-12	57.9
WP_173400387.1\|1565986_1566490_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_042295110.1\|1566560_1566821_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_042295112.1\|1567088_1567634_-\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	2.5e-40	42.9
WP_042295114.1\|1568024_1568441_-	hypothetical protein	NA	NA	NA	NA
WP_042295116.1\|1568800_1569868_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	3.8e-32	30.1
WP_014018071.1\|1570078_1571470_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_042295118.1\|1571487_1572873_-\|tRNA	glycine--tRNA ligase	A0A1V0SIF1	Klosneuvirus	5.0e-48	27.1
WP_007441875.1\|1572964_1574047_-	AAA family ATPase	G3M9Z9	Bacillus_virus	3.9e-56	35.1
WP_005805095.1\|1574339_1575812_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	6.8e-96	42.7
WP_042295120.1\|1575834_1576314_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_005805093.1\|1576401_1577376_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_014018072.1\|1577438_1579244_-\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	3.1e-111	46.9
WP_005805091.1\|1579406_1579946_-	hypoxanthine phosphoribosyltransferase	A0A2K9L634	Tupanvirus	5.1e-09	25.6
WP_042295124.1\|1579935_1581393_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_042295127.1\|1581492_1583847_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_005805088.1\|1584320_1584743_-	RNA-binding protein S1	NA	NA	NA	NA
WP_007440410.1\|1584778_1585063_-	septum formation initiator family protein	NA	NA	NA	NA
WP_042295130.1\|1585135_1585516_-	spore cortex biosynthesis protein YabQ	NA	NA	NA	NA
WP_005805084.1\|1585512_1585827_-	sporulation protein YabP	NA	NA	NA	NA
WP_042295132.1\|1585896_1586136_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_005805082.1\|1586181_1586457_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	3.6e-19	56.2
WP_005805080.1\|1586622_1588158_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_005805079.1\|1588273_1588822_-	stage V sporulation protein T	A0A2I7SC16	Paenibacillus_phage	3.6e-10	66.7
WP_007440409.1\|1588924_1589914_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_042295134.1\|1589950_1590970_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_042295136.1\|1590998_1594508_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_042295138.1\|1594525_1595080_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_005805075.1\|1595128_1595965_-\|protease	serine protease	NA	NA	NA	NA
WP_042295141.1\|1596008_1597412_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.7e-27	31.4
WP_005805073.1\|1597411_1598098_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.6e-45	40.5
WP_042295143.1\|1598276_1599254_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	8.3e-50	36.6
WP_042295146.1\|1599271_1600633_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A1V0SFS6	Hokovirus	1.2e-30	36.5
WP_005805070.1\|1600730_1602119_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	4.7e-91	39.9
1607752:1607770	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008713

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection