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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP008713 Candidatus Arthromitus sp. SFB-mouse-NL chromosome, complete genome 2 crisprs csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh 0 5 3 0

Results visualization

1. NZ_CP008713
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008713_1 116571-116865 Orphan I-C
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008713_2 738019-739498 TypeI I-C
22 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP008713_2 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738708-738741 34 NC_019507 Campylobacter phage CP21, complete genome 33170-33203 7 0.794
NZ_CP008713_2 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738708-738741 34 MT932329 Campylobacter phage F379, complete genome 100334-100367 7 0.794
NZ_CP008713_2 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738708-738741 34 HE815464 Campylobacter phage CP21 complete sequence 33170-33203 7 0.794
NZ_CP008713_2 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738249-738281 33 NC_009927 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence 196199-196231 8 0.758
NZ_CP008713_2 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738576-738608 33 MT774394 CrAssphage cr271_1, complete genome 82022-82054 8 0.758
NZ_CP008713_2 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738906-738939 34 KX017520 Salmonella phage 64795_sal3, complete genome 37898-37931 8 0.765
NZ_CP008713_2 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738249-738281 33 NZ_CP053907 Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence 60256-60288 9 0.727
NZ_CP008713_2 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738576-738608 33 NZ_CP014283 Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence 172855-172887 9 0.727
NZ_CP008713_2 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 739301-739333 33 MK250029 Prevotella phage Lak-C1, complete genome 178327-178359 9 0.727
NZ_CP008713_2 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738906-738939 34 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 598489-598522 10 0.706
NZ_CP008713_2 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 738906-738939 34 NZ_CP013167 Lactobacillus plantarum strain MF1298 plasmid pMF1298-12, complete sequence 1184-1217 10 0.706
NZ_CP008713_2 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT 739301-739333 33 NZ_AP018258 Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome 89683-89715 10 0.697

1. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***  

2. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***  

3. spacer 2.11|738708|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.794

atcggctc--tatctatataatcttttttga--gccag	CRISPR spacer
--cgattctatatctttataatcttttttgaaggcc--	Protospacer
  **..**  ***** ***************  ***  

4. spacer 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 8, identity: 0.758

gcaaaaaatcacaaatatgactggttc----ttttaa	CRISPR spacer
taaaaaaatcacaaatttgaatggttcaggatt----	Protospacer
  ************** *** ******    **    

5. spacer 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MT774394 (CrAssphage cr271_1, complete genome) position: , mismatch: 8, identity: 0.758

tatctcatataatgcatataatactatatttat	CRISPR spacer
tttacaatataatgaatataatactatattacc	Protospacer
* * . ******** ***************  .

6. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to KX017520 (Salmonella phage 64795_sal3, complete genome) position: , mismatch: 8, identity: 0.765

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
catactgcgtatcaccattattaacaacatcaat	Protospacer
**  * * ..**************. ********

7. spacer 2.4|738249|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053907 (Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaaaaatcacaaatatgactggttcttttaa	CRISPR spacer
gcaattaatcacaaatatgactggcgaacaaaa	Protospacer
****  ******************.   .  **

8. spacer 2.9|738576|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.727

tatctcatataatgcatataatactatatttat	CRISPR spacer
atctttccataatgcatctagtactatatttat	Protospacer
  ..*. .********* **.************

9. spacer 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.727

tcaggctcaccattaaattttaattactttatg	CRISPR spacer
ctattcaaaccatttaattttaatttctttata	Protospacer
..*  *  ****** ********** ******.

10. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 10, identity: 0.706

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
cagccggaacatccccattattaacctttatgaa	Protospacer
***.********* **********.* .  ..* 

11. spacer 2.14|738906|34|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013167 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-12, complete sequence) position: , mismatch: 10, identity: 0.706

cagtcggaacatcaccattattaatcacatcaat	CRISPR spacer
taagattatcatcaccatttttaatcacttcaac	Protospacer
.*.    * ********** ******** ****.

12. spacer 2.20|739301|33|NZ_CP008713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018258 (Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome) position: , mismatch: 10, identity: 0.697

tcaggctcaccattaaattttaattactttatg	CRISPR spacer
cgcatggcgccatttatttttaattactttatg	Protospacer
.  .   *.***** * ****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 111347 : 189910 85 Clostridium_phage(18.52%) plate,holin,integrase,portal,capsid,head,terminase,protease,tail attL 104807:104823|attR 134792:134808
DBSCAN-SWA_2 771907 : 842779 72 Clostridium_phage(32.43%) plate,holin,tRNA,capsid,portal,integrase,head,terminase,protease,tail attL 807141:807200|attR 841315:841402
DBSCAN-SWA_3 1514473 : 1602119 100 Bacteriophage(14.71%) plate,holin,tRNA,capsid,portal,integrase,head,terminase,tail,protease attL 1563964:1563982|attR 1607752:1607770
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage