CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006692	Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome	3 crisprs	DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	17	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006692_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006692_1

2662169-2663175

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	PILER-CR

16 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP006692_1

>merge|NZ_CP006692|1|2662169-2663175|CRISPRCasFinder,CRT,PILER-CR
AGTAAAAGCCCCGCTGGCGCGGGGAACACTTTTATCTTGATGGCATACTGAAGGCCAACCACGGTTTATCTCCGCTGGCGCGGGGAACACCTCACGCTCTTCGTTAGATAGTGGCTGTAGGTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGTTCAGCAGTTTTGATTCTGGATATCCAGCGGTTTATCCCCGCTGGCGCGGGGAACACGTACTGATGGGCGGTAGCACCGCGCCTGTGGACGGTTTATCCCCGCTAGCGCGGGGAACACGCCACACCCGGCTGATTTGCTGACACGAAGGGCGGTTTATCCCCGCTAGCGCGGGGAACACTCCGGTTGTGTGATGGTAAATTCGCAAAGTAACGGTTTATCCCCGCTAGCGCGGGGAACACTCTTTTAAATATCTTCCTTCAAAAGGCTGTGACGGTTTATCCCCGCTAGCGCGGGGAACACTGGAGTTCGCGTATACCCGTCCGGAAGAAAGACGGTTTATCCCCGCTAGCGCGGGGAACACCCCTGCATTTTTAGCTGAATCCGCCCTCTTCGCGGTTTATCCCCGCTAGCGCGGGGAACACGGGGATTATGGGGTTTGCCGGCGATGGCAAGACGGTTTATCCCCGCTAGCGCGGGGAACACCCCAGGAGTTACCTGCGCTCCTAGTTGTACGTCGGTTTATCCCCGCTAGCGCGGGGAACACGATAGATTCAGGTGCGAACATATCAACAATTTCGGTTTATCCCCGCTAGCGCGGGGAACACCATCGCACAATTTTTCCGCAATCTGTTTTGCGCGGTTTATCCCCGCTAGCGCGGGGAACACCCTGAGCTACAGGCTGTTTCATATAAAAATATTCGGTTTATCCCCGCTAGCGCGGGGAACACGTTGAACTCCAGATCGTGGTCAATTTTGTAACCCGGTTTATCCCCGCTAGCGCGGGGAACACTGGCAACAAAGAGCCAGAAAAGAGCGCAGAGCCGGTTTATCCCCGCTAGCGCGGGGAACAC

>NZ_CP006692|1|1|2662169-2663175|CRISPRCasFinder
AGTAAAAGCCCCGCTGGCGCGGGGAACAC	TTTTATCTTGATGGCATACTGAAGGCCAACCA
CGGTTTATCTCCGCTGGCGCGGGGAACAC	CTCACGCTCTTCGTTAGATAGTGGCTGTAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGTTCAGCAGTTTTGATTCTGGATATCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACTGATGGGCGGTAGCACCGCGCCTGTGGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GCCACACCCGGCTGATTTGCTGACACGAAGGG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCCGGTTGTGTGATGGTAAATTCGCAAAGTAA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCTTTTAAATATCTTCCTTCAAAAGGCTGTGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGAGTTCGCGTATACCCGTCCGGAAGAAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCTGCATTTTTAGCTGAATCCGCCCTCTTCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GGGGATTATGGGGTTTGCCGGCGATGGCAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCAGGAGTTACCTGCGCTCCTAGTTGTACGT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GATAGATTCAGGTGCGAACATATCAACAATTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CATCGCACAATTTTTCCGCAATCTGTTTTGCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCTGAGCTACAGGCTGTTTCATATAAAAATATT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GTTGAACTCCAGATCGTGGTCAATTTTGTAACC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGCAACAAAGAGCCAGAAAAGAGCGCAGAGC
CGGTTTATCCCCGCTAGCGCGGGGAACAC

>NZ_CP006692|1|1|2662169-2663175|CRT
AGTAAAAGCCCCGCTGGCGCGGGGAACAC	TTTTATCTTGATGGCATACTGAAGGCCAACCA
CGGTTTATCTCCGCTGGCGCGGGGAACAC	CTCACGCTCTTCGTTAGATAGTGGCTGTAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGTTCAGCAGTTTTGATTCTGGATATCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACTGATGGGCGGTAGCACCGCGCCTGTGGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GCCACACCCGGCTGATTTGCTGACACGAAGGG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCCGGTTGTGTGATGGTAAATTCGCAAAGTAA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCTTTTAAATATCTTCCTTCAAAAGGCTGTGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGAGTTCGCGTATACCCGTCCGGAAGAAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCTGCATTTTTAGCTGAATCCGCCCTCTTCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GGGGATTATGGGGTTTGCCGGCGATGGCAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCAGGAGTTACCTGCGCTCCTAGTTGTACGT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GATAGATTCAGGTGCGAACATATCAACAATTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CATCGCACAATTTTTCCGCAATCTGTTTTGCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCTGAGCTACAGGCTGTTTCATATAAAAATATT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GTTGAACTCCAGATCGTGGTCAATTTTGTAACC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGCAACAAAGAGCCAGAAAAGAGCGCAGAGC
CGGTTTATCCCCGCTAGCGCGGGGAACAC

>NZ_CP006692|1|1|2662230-2663175|PILER-CR
CGGTTTATCTCCGCTGGCGCGGGGAACAC	CTCACGCTCTTCGTTAGATAGTGGCTGTAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGTTCAGCAGTTTTGATTCTGGATATCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACTGATGGGCGGTAGCACCGCGCCTGTGGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GCCACACCCGGCTGATTTGCTGACACGAAGGG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCCGGTTGTGTGATGGTAAATTCGCAAAGTAA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCTTTTAAATATCTTCCTTCAAAAGGCTGTGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGAGTTCGCGTATACCCGTCCGGAAGAAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCTGCATTTTTAGCTGAATCCGCCCTCTTCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GGGGATTATGGGGTTTGCCGGCGATGGCAAGA
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCCAGGAGTTACCTGCGCTCCTAGTTGTACGT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GATAGATTCAGGTGCGAACATATCAACAATTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CATCGCACAATTTTTCCGCAATCTGTTTTGCG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCTGAGCTACAGGCTGTTTCATATAAAAATATT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	GTTGAACTCCAGATCGTGGTCAATTTTGTAACC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TGGCAACAAAGAGCCAGAAAAGAGCGCAGAGC
CGGTTTATCCCCGCTAGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006692.1\|WP_001221542.1\|2653900_2654662_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP006692.1\|WP_038392446.1\|2654642_2655692_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP006692.1\|WP_038392447.1\|2656167_2656878_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP006692.1\|WP_038392458.1\|2669058_2671722_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP006692.1\|WP_038392455.1\|2665870_2666926_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP006692.1\|WP_001219254.1\|2655688_2656168_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP006692.1\|WP_038392452.1\|2663564_2664485_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP006692.1\|WP_000517485.1\|2656896_2657208_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP006692.1\|WP_038392457.1\|2667490_2669047_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP006692.1\|WP_038392459.1\|2672158_2673112_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP006692.1\|WP_038392450.1\|2659813_2660722_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP006692.1\|WP_001096609.1\|2673202_2673937_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP006692.1\|WP_020845101.1\|2657398_2657722_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP006692.1\|WP_038392453.1\|2664481_2665132_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP006692.1\|WP_038392448.1\|2657772_2658378_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP006692.1\|WP_038392449.1\|2658364_2659804_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP006692.1\|WP_000062296.1\|2663271_2663565_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP006692.1\|WP_038392454.1\|2665113_2665860_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP006692.1\|WP_038392451.1\|2660974_2662027_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP006692.1\|WP_038392456.1\|2666939_2667494_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_CP006692.1\|WP_001221542.1\|2653900_2654662_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.43378e-146
NZ_CP006692.1\|WP_038392446.1\|2654642_2655692_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP006692.1\|WP_038392447.1\|2656167_2656878_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.56752e-119
NZ_CP006692.1\|WP_038392458.1\|2669058_2671722_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.31579e-170
NZ_CP006692.1\|WP_038392455.1\|2665870_2666926_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.55047e-138
NZ_CP006692.1\|WP_001219254.1\|2655688_2656168_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	6.44996e-105
NZ_CP006692.1\|WP_038392452.1\|2663564_2664485_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.93549e-158
NZ_CP006692.1\|WP_000517485.1\|2656896_2657208_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.96707e-63
NZ_CP006692.1\|WP_038392457.1\|2667490_2669047_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.37823e-175
NZ_CP006692.1\|WP_038392459.1\|2672158_2673112_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.00686e-180
NZ_CP006692.1\|WP_038392450.1\|2659813_2660722_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP006692.1\|WP_001096609.1\|2673202_2673937_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NZ_CP006692.1\|WP_020845101.1\|2657398_2657722_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.27176e-47
NZ_CP006692.1\|WP_038392453.1\|2664481_2665132_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.47342e-73
NZ_CP006692.1\|WP_038392448.1\|2657772_2658378_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	8.17617e-146
NZ_CP006692.1\|WP_038392449.1\|2658364_2659804_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP006692.1\|WP_000062296.1\|2663271_2663565_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.41158e-63
NZ_CP006692.1\|WP_038392454.1\|2665113_2665860_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.14724e-46
NZ_CP006692.1\|WP_038392451.1\|2660974_2662027_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP006692.1\|WP_038392456.1\|2666939_2667494_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.18693e-31

>NZ_CP006692.1|WP_038392451.1|2660974_2662027_+|aminopeptidase
MFSATRRFTAILALGVSAVLPALAASPKPGEMANIQARHIATFFPGRMTGSPAEMLSADYLRQQFSQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGNVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDDAVGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENVLQRMSATKKKNTLLVINLDNLVVGDKLYFNSGKNTPEAVRTLTRDRALAIARQHGIAASTNPGLNPAYPKGTGCCNDAEVFDDAGISVLSVEATNWSLGKKDGYQQRAKNASFPDGNSWHNVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAAPIQPK
>NZ_CP006692.1|WP_038392450.1|2659813_2660722_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGSLPFPLLHVDTGWKFREMYAFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALTKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGLINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLIMVDDDRIDLQPGEVIQKKMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP006692.1|WP_038392449.1|2658364_2659804_-|sulfate-adenylyltransferase-subunit-CysN
MNTTLAQQIADEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGNLDIRFVPLSALEGDNIAVQSAAMRWYSGPTLLEVLETVDIQRVADRQPMRFPVQYVNRPNLDFRGYAGTLASGCVRVGQRIKVLPSGVESSVARIVTFDGDKDDAYAGEAITLVLNNEIDISRGDLLLAATETLTPVQRAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARINNIRYQIDINHLTQRDVESLPLNGIGLVEMTFDEPLALDVYQQNPVTGGLIFIDRLSNVTVGAGMVREAVEGNVTPPEKYSAFELELNALVRRYFPHWDARDLSGDKHGAA
>NZ_CP006692.1|WP_038392448.1|2657772_2658378_-|adenylyl-sulfate-kinase
MAQHDENVVWHSHPVTVAAREKLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRKENVRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGNDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQIHLNGEQLVTNLVSQLLDLLRQRDIIRS
>NZ_CP006692.1|WP_020845101.1|2657398_2657722_-|DUF3561-family-protein
MRNSHNITFTRSDAFIVDDDATSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKLLFSMMFTLVAVGALFGVLFIWLLG
>NZ_CP006692.1|WP_000517485.1|2656896_2657208_-|cell-division-protein-FtsB
MGKLTLLLLTLLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR
>NZ_CP006692.1|WP_038392447.1|2656167_2656878_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDTRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHHDDLARLLAISANNRVGGILASPVRDTMKRGEPGKSVIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALIEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP006692.1|WP_001219254.1|2655688_2656168_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPVIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP006692.1|WP_038392446.1|2654642_2655692_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGNNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLTKPDFNQVVDGDALQLAGRGSWFVATTEELPELQRRVDEKALMITASLPGSGEWGTQREALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVREVINTVGDYAHIAE
>NZ_CP006692.1|WP_001221542.1|2653900_2654662_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAVVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVADWLDSVGVGTQW
>NZ_CP006692.1|WP_000062296.1|2663271_2663565_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMMVVATENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQITQLGGEGNVVMAWATNTESGFEFQTWGENRRIPVDVDGLRLVSFLPIQNQ
>NZ_CP006692.1|WP_038392452.1|2663564_2664485_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGAVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSIEQLRGIEGSRVRATYALLAKQYGVKWNGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSTKLTGRLIPLIENVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHS
>NZ_CP006692.1|WP_038392453.1|2664481_2665132_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQILHLVERGEYVMHQWLWALFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTCPFVPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWPYQQQAALEWLARQGEQNGFSLRQASVEAYRQQQLRREKSRQMIQFSSVDYAGVLVITDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP006692.1|WP_038392454.1|2665113_2665860_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLSAFNCHYSFLLCASRNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLDGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP006692.1|WP_038392455.1|2665870_2666926_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLCAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNTVYAQETAFKDFNVMNQQGSMKDVLDFICA
>NZ_CP006692.1|WP_038392456.1|2666939_2667494_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTTAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NZ_CP006692.1|WP_038392457.1|2667490_2669047_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSLAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGTQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAVTRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGTCDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKDVKAGLWGVGADFDNMKIRCWYEHHFPLLMTENLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NZ_CP006692.1|WP_038392458.1|2669058_2671722_-|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNVFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAKKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGNCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKLSTRLAEESITLWLAKVVDNVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NZ_CP006692.1|WP_038392459.1|2672158_2673112_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATYRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACSADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFSMIHPCITYLLHSYSPITEFKDTNTAFLNNFNQDYDNYHSNKRDIDPILEQIYLTHEHSLHIGKNNCSRNILML
>NZ_CP006692.1|WP_001096609.1|2673202_2673937_-|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP006692_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006692_2

2679171-2680054

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

14 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP006692_2

>merge|NZ_CP006692|2|2679171-2680054|PILER-CR,CRISPRCasFinder,CRT
CGATTTATTCCCGCTGGCGCGGGGAACACGCCTGTCTAGTTTTTGCTCTCTCGATGACACTCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCTGATCTGACGTAATACTCAGGGGCTTGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGGCAGGCGGGTGAGTTGCTGGAAGCGATTACGGTTTATCCCCGCTGGCGCGGGGAACACTTAAAAATGGTACTACTCAATTAACCACACGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCGCGCAGGAATTGGGAAGCTGCCAATACCGACGGTTTATCCCCGCTGGCGCGGGGAACACATCCACACGTCAACTGCACCCGGGCCTTCTCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAAGTTTATTAAATCCTGATACAGTTAATTCGCGGTTTATCCCCGCTGGCGCGGGGAACACCAATAACTCCTCTCTGGGAATTACTGAAGACTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGATGATTTGTTCCAGTTTTGACGGCTGAGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTAGATAGTGGCTGTAGGTCAGTGCCATCAGCCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCGTTGACCAACCCTGCGCCGCCTCATCATCGGTTTATCCCCGCTGGCGCGGGGAACACCTGGAGGAGAAGGAAGCGGCGCTATTATTAATCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAATAAATCACAGATTGCTGATTATATTAATGGTTTATCCCCGCTGGCGCGGGGAACACAAGAGGTAAATACCGCGCATTTTTTAGATGCGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP006692|2|2|2679171-2680054|PILER-CR
CGATTTATTCCCGCTGGCGCGGGGAACAC	GCCTGTCTAGTTTTTGCTCTCTCGATGACACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCTGATCTGACGTAATACTCAGGGGCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGCAGGCGGGTGAGTTGCTGGAAGCGATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAAAAATGGTACTACTCAATTAACCACACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCGCAGGAATTGGGAAGCTGCCAATACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACACGTCAACTGCACCCGGGCCTTCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGTTTATTAAATCCTGATACAGTTAATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATAACTCCTCTCTGGGAATTACTGAAGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATGATTTGTTCCAGTTTTGACGGCTGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTAGATAGTGGCTGTAGGTCAGTGCCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTTGACCAACCCTGCGCCGCCTCATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGAGGAGAAGGAAGCGGCGCTATTATTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATAAATCACAGATTGCTGATTATATTAA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGGTAAATACCGCGCATTTTTTAGATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP006692|2|2|2679171-2680054|CRISPRCasFinder
CGATTTATTCCCGCTGGCGCGGGGAACAC	GCCTGTCTAGTTTTTGCTCTCTCGATGACACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCTGATCTGACGTAATACTCAGGGGCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGCAGGCGGGTGAGTTGCTGGAAGCGATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAAAAATGGTACTACTCAATTAACCACACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCGCAGGAATTGGGAAGCTGCCAATACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACACGTCAACTGCACCCGGGCCTTCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGTTTATTAAATCCTGATACAGTTAATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATAACTCCTCTCTGGGAATTACTGAAGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATGATTTGTTCCAGTTTTGACGGCTGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTAGATAGTGGCTGTAGGTCAGTGCCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTTGACCAACCCTGCGCCGCCTCATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGAGGAGAAGGAAGCGGCGCTATTATTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATAAATCACAGATTGCTGATTATATTAA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGGTAAATACCGCGCATTTTTTAGATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP006692|2|2|2679171-2680054|CRT
CGATTTATTCCCGCTGGCGCGGGGAACAC	GCCTGTCTAGTTTTTGCTCTCTCGATGACACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCTGATCTGACGTAATACTCAGGGGCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGCAGGCGGGTGAGTTGCTGGAAGCGATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAAAAATGGTACTACTCAATTAACCACACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCGCAGGAATTGGGAAGCTGCCAATACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACACGTCAACTGCACCCGGGCCTTCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGTTTATTAAATCCTGATACAGTTAATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATAACTCCTCTCTGGGAATTACTGAAGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATGATTTGTTCCAGTTTTGACGGCTGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTAGATAGTGGCTGTAGGTCAGTGCCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTTGACCAACCCTGCGCCGCCTCATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGAGGAGAAGGAAGCGGCGCTATTATTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATAAATCACAGATTGCTGATTATATTAA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGGTAAATACCGCGCATTTTTTAGATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006692.1\|WP_038392466.1\|2687960_2689256_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP006692.1\|WP_001096609.1\|2673202_2673937_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP006692.1\|WP_038392461.1\|2675732_2677532_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP006692.1\|WP_038392455.1\|2665870_2666926_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP006692.1\|WP_038392459.1\|2672158_2673112_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP006692.1\|WP_038392465.1\|2684765_2685557_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP006692.1\|WP_038392458.1\|2669058_2671722_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP006692.1\|WP_001275831.1\|2693334_2694675_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP006692.1\|WP_000226832.1\|2685674_2687909_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP006692.1\|WP_038392464.1\|2680344_2681016_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP006692.1\|WP_038392468.1\|2694695_2696036_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP006692.1\|WP_000210866.1\|2682900_2684538_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP006692.1\|WP_000036734.1\|2681519_2682818_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP006692.1\|WP_020845123.1\|2689313_2692070_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP006692.1\|WP_038392467.1\|2692113_2693256_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP006692.1\|WP_038392463.1\|2678281_2679079_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP006692.1\|WP_038392460.1\|2674020_2675733_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP006692.1\|WP_038392457.1\|2667490_2669047_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP006692.1\|WP_038392462.1\|2677838_2678201_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP006692.1\|WP_038392456.1\|2666939_2667494_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_CP006692.1\|WP_038392466.1\|2687960_2689256_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP006692.1\|WP_001096609.1\|2673202_2673937_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NZ_CP006692.1\|WP_038392461.1\|2675732_2677532_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP006692.1\|WP_038392455.1\|2665870_2666926_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.55047e-138
NZ_CP006692.1\|WP_038392459.1\|2672158_2673112_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.00686e-180
NZ_CP006692.1\|WP_038392465.1\|2684765_2685557_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.53648e-157
NZ_CP006692.1\|WP_038392458.1\|2669058_2671722_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.31579e-170
NZ_CP006692.1\|WP_001275831.1\|2693334_2694675_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP006692.1\|WP_000226832.1\|2685674_2687909_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP006692.1\|WP_038392464.1\|2680344_2681016_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.93429e-155
NZ_CP006692.1\|WP_038392468.1\|2694695_2696036_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP006692.1\|WP_000210866.1\|2682900_2684538_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP006692.1\|WP_000036734.1\|2681519_2682818_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP006692.1\|WP_020845123.1\|2689313_2692070_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP006692.1\|WP_038392467.1\|2692113_2693256_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP006692.1\|WP_038392463.1\|2678281_2679079_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.50172e-93
NZ_CP006692.1\|WP_038392460.1\|2674020_2675733_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP006692.1\|WP_038392457.1\|2667490_2669047_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.37823e-175
NZ_CP006692.1\|WP_038392462.1\|2677838_2678201_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	7.15674e-54
NZ_CP006692.1\|WP_038392456.1\|2666939_2667494_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.18693e-31

>NZ_CP006692.1|WP_038392463.1|2678281_2679079_-|MBL-fold-metallo-hydrolase
MALTIKVLLENHKAAGVDNALKARPGLSLLVQDESTSILFDTGPDDSFIQNASTMRIDLSDISAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMVYTRDPMPISDKFIWSGEIPVAMPEAYGVFGGRDAEPDYISDEGVLIYKSEKGLVIITGCGHRGIANIVRHCQNITGINRLYALVGGFHLRCASPFTLWRVRRFLNEQKPEKLCGCHCTGTWGRLWLPEMIAPATGDVLHF
>NZ_CP006692.1|WP_038392462.1|2677838_2678201_+|6-carboxytetrahydropterin-synthase-QueD
MPTMLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDHLDHYYLNDIPGLENPTSEVLAKWIWGQVKPVVPLLSAVQVKETCTAGCVYRGT
>NZ_CP006692.1|WP_038392461.1|2675732_2677532_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPLTGLLPLNVEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRPDTITTLPAPVAEIPGVTLISASQTGNARRVAEALRDDLLAVNLNVTLVNAGDYKYKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPALKNTAFAVFSLGDTSYEFFCQAGKDFDSKLAELGGKRLLDRVDADVEYQSAAAQWRARMVEVLRSRTPVMTPAQSVTSGAVNEIHTSPYTKEAPLSASLALNQKITGRNSEKDVRHIEIDLGDSGLCYQPGDALGVWYQNDPALVNEIVELLWLKGDEPVTVNDKRLPLSEALQWHFELTVNTANIVETYATLTRSETLMSLVGDKTQLQRYAAATPIVDMLRFSPAQLEADALVGLLRPLTPRLYSIASSQAEVGNEAHITVGVVRYDIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPEEPQTPVIMIGPGTGIAPFRAFMQQRAADDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP006692.1|WP_038392460.1|2674020_2675733_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERTEQKLEPRHAMLLRCRLPGGVISTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAVAENGRLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGIDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIAGVPESEKTKIEKLARDHGLMNAVTAQRENAMACVSFPTCPLAMAEAERFLPTFIDKVEAIMASHGMSDEHIVLRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELIGRWAKEREAGEGFGDFTVRAGIVRPVLDPARDFWE
>NZ_CP006692.1|WP_001096609.1|2673202_2673937_-|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP006692.1|WP_038392459.1|2672158_2673112_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATYRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACSADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFSMIHPCITYLLHSYSPITEFKDTNTAFLNNFNQDYDNYHSNKRDIDPILEQIYLTHEHSLHIGKNNCSRNILML
>NZ_CP006692.1|WP_038392458.1|2669058_2671722_-|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNVFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAKKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGNCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKLSTRLAEESITLWLAKVVDNVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NZ_CP006692.1|WP_038392457.1|2667490_2669047_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSLAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGTQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAVTRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGTCDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKDVKAGLWGVGADFDNMKIRCWYEHHFPLLMTENLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NZ_CP006692.1|WP_038392456.1|2666939_2667494_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTTAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NZ_CP006692.1|WP_038392455.1|2665870_2666926_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLCAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNTVYAQETAFKDFNVMNQQGSMKDVLDFICA
>NZ_CP006692.1|WP_038392464.1|2680344_2681016_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLTVISRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYGVLYQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
>NZ_CP006692.1|WP_000036734.1|2681519_2682818_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP006692.1|WP_000210866.1|2682900_2684538_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLTDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP006692.1|WP_038392465.1|2684765_2685557_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNAICAAISDKLERRHPHVFGKISADSSEEVLTRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVIDQAKLEEEMGDLLFAAVNMARHLGTKAEIALQKANDKFERRFREVERIVAARGLQMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP006692.1|WP_000226832.1|2685674_2687909_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKNEGVLAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGATSGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NZ_CP006692.1|WP_038392466.1|2687960_2689256_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPEESADVIITEDKKQFARARVSRRLNDSPERELPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCPPDKSLQMGFRQAGSSDIVNVEQCPVLVPQLEALLPRVRACLASLQGTRHLGHVELVQAGNGTLMILRHTAPLSASDKEKLERFSHSEGLSLFLAPFSEILETVIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAADRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKARENAIRNELHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMRHIIKLKPIRIVYVSCNPATLARDSEVLVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP006692.1|WP_020845123.1|2689313_2692070_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKSTHNMLGYVALELDLKSVRLQQYKEIFISSVMMFFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTECLAGKRLAYIEPNATAAQCTLDLLNDTPVEVVYSPAFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLKHHAEPLLMDTSKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGTNVTTRLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPDGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSDVREEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP006692.1|WP_038392467.1|2692113_2693256_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPMADGGEGTVEAMVEATAGRIVHVDVTGPLGHRVNAFYGLSGDARCAFIEMAAASGLEQVPLAQRDPLNTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDVQGNDIAQGGIGLEALASIDISGLDKRLSACRIDVACDVTNPLTGKEGASAIFGPQKGATPEMIERLDNALIRYAHLIARDLHVDVLGLVGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEERLADADLVITGEGRIDSQTLHGKVPIGVAGIAKRHNKPVIGIAGSLTADVGVVHGYGLDAVFSVIYTICTLEDALENAAENVRMTARNVAATLKAGQQLR
>NZ_CP006692.1|WP_001275831.1|2693334_2694675_-|glucarate-dehydratase
MSAQFTTPVVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNAGHTGVGEIPGGEKIRKTLEEAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQTEEKCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPNARVTLDPNGAWSLNEAIQIGKYLKGTLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP006692.1|WP_038392468.1|2694695_2696036_-|glucarate-dehydratase
MNTQSSPIITDMKVIPVAGHDSMLLNIGGAHNAWFTRNIVVLTDNAGHTGVGEAPGGDVIYQTLMDAIPMVLGQEVARLNHVVQRVHKGNQAADFDTFGKGAWTFELRVNAVSALEAALLDLLGQTLNVPVCELLGPGKQRDAVTVLGYLFYIGDRAKTDLPYLDNTPGHHDWYRLRHQEALSSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIATVRALKKRFPEARITVDPNGAWRLDEAIALCKGLNDVLAYAEDPCGAEPGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGAIAVPDAPGLGVELDWEQVQKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH

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Crispr_ID: NZ_CP006692_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006692_3

4287060-4287142

Orphan

Consensus_repeat	Method
TGGCATCACCCTTTAGCCTATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006692_3

>merge|NZ_CP006692|3|4287060-4287142|CRISPRCasFinder
TGGCATCACCCTTTAGCCTATTGATTGGTGGCGGATCGATAGGTGTTTATGTGATGCCAGTGGCATCACCCTTTTGCCTATTG

>NZ_CP006692|3|3|4287060-4287142|CRISPRCasFinder
TGGCATCACCCTTTAGCCTATTG	ATTGGTGGCGGATCGATAGGTGTTTATGTGATGCCAG
TGGCATCACCCTTTTGCCTATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006692.1\|WP_038393675.1\|4282553_4283252_-\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP006692.1\|WP_038393673.1\|4282069_4282564_-\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NZ_CP006692.1\|WP_038393682.1\|4290389_4290929_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP006692.1\|WP_038393676.1\|4283833_4284400_-\|serine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226075
NZ_CP006692.1\|WP_038393681.1\|4289237_4290371_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	unknown
NZ_CP006692.1\|WP_038393677.1\|4284624_4286937_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP006692.1\|WP_038393679.1\|4288176_4288437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006692.1\|WP_038393684.1\|4292393_4293749_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP006692.1\|WP_038393668.1\|4279901_4280510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274622
NZ_CP006692.1\|WP_038393670.1\|4280502_4280967_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|163460
NZ_CP006692.1\|WP_038393666.1\|4278735_4279269_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP006692.1\|WP_051683669.1\|4288426_4289146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006692.1\|WP_038393685.1\|4293741_4294116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006692.1\|WP_038393671.1\|4281087_4281504_-\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP006692.1\|WP_038393667.1\|4279244_4279895_-\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP006692.1\|WP_038393683.1\|4290912_4292397_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NZ_CP006692.1\|WP_038393687.1\|4295387_4296134_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107
NZ_CP006692.1\|WP_038393678.1\|4287509_4287806_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP006692.1\|WP_038393672.1\|4281745_4282021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006692.1\|WP_038393686.1\|4294112_4294997_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NZ_CP006692.1\|WP_038393675.1\|4282553_4283252_-\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	4.81096e-91
NZ_CP006692.1\|WP_038393673.1\|4282069_4282564_-\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	5.25272e-48
NZ_CP006692.1\|WP_038393682.1\|4290389_4290929_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	3.12775e-72
NZ_CP006692.1\|WP_038393676.1\|4283833_4284400_-\|serine-hydrolase-family-protein	gnl\|CDD\|226075	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only].	1.52925e-27
NZ_CP006692.1\|WP_038393677.1\|4284624_4286937_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.01409e-63
NZ_CP006692.1\|WP_038393686.1\|4294112_4294997_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.56021e-33
NZ_CP006692.1\|WP_038393684.1\|4292393_4293749_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP006692.1\|WP_038393668.1\|4279901_4280510_-\|hypothetical-protein	gnl\|CDD\|274622	TIGR03513, GldL_gliding, gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility].	0.00288908
NZ_CP006692.1\|WP_038393670.1\|4280502_4280967_-\|transcriptional-regulator	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	8.50611e-41
NZ_CP006692.1\|WP_038393666.1\|4278735_4279269_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	5.06154e-09
NZ_CP006692.1\|WP_038393671.1\|4281087_4281504_-\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	6.4589e-68
NZ_CP006692.1\|WP_038393667.1\|4279244_4279895_-\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	2.2367e-82
NZ_CP006692.1\|WP_038393683.1\|4290912_4292397_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	7.32312e-132
NZ_CP006692.1\|WP_038393687.1\|4295387_4296134_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	2.34211e-13
NZ_CP006692.1\|WP_038393678.1\|4287509_4287806_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.47971e-10

>NZ_CP006692.1|WP_038393677.1|4284624_4286937_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKLAPYLIILTLPFISLSARADYHTQINAGNSVSGDVVDGSKGNQHVYGTLTNSTITGPYAYSYVGDGGQTNHITVTDHGELFLEPGGSAYDTQVTADGDLQVNGYAENTYVDSGGQVYVNAGNNGVKDPDQGGQIVNTTVGAGGLVVNRYGIDTNTVIEAGGELDTGWNYPYETRNTAISRDAVIQNGGIQQVSNGGTSENSRVDDGGTLIVTGTWHYDVVTDSQPSAWYRGTADDTLVYGVMQNQGGLDENTTVQSGGQYTLSGYGLSHQLTIAQGGSAQINDGALDSFWLYGLMNVSSQATLTGTGTVGSSGELILNEGAKTSGLTLALDGILSLQNSSDAGPHHYQIAGLEMNGGTVLFDPTSFATLSMETLSGSGNFWMNTNIAAQQGDMISVSGEANGDFGIWINDTGESPTDPQSLQVVQTRGGDAQFTLLNPNQQVDIGTWEYGLTPDGQGNWSLTPQATPTPSTEAVLAMANVTPTIFQAEASALQTRLDVTRFRPHQGELWVQALSNRFDVNHTGNAAYHQRLSGLMMCYDKNLPHQSGLLTLGIAGGYSRSDLDLINDSDGSVDSYSAALYASYYDQRHFWLDGMLKGNLFNQHLNARMSSGGHADGSYTIPGMGGSLIAGYDARFARTTLSPFIGFTGFISQSDDYRMSNGMQAHPGTAKSALGQVGFRLRQNITTHNGMQFIPWLKVALEQEFVHNNPVRVNDDYFNNDIAGTRGSYQAGISAALTQQMHIYASVNYEKGDGMESPWTGNAGFSYRF
>NZ_CP006692.1|WP_038393676.1|4283833_4284400_-|serine-hydrolase-family-protein
MDKKRLFIVHGFMAKPSDHWFPWLKCEAEKQDIDVIIPELPSPESPVLSEWLAVLRDSVGKIDNKTWFVAHSLGCVTILRLLAQLTENEMPAGIILVSGFNETLLIWRQHGLSEMDTFIYPPLEMGQIVNGVKHRYVIGSLNDTIVPTELTLKLSQQLNAPFYALPDSGHFLGDDGINELPLVLQLLT
>NZ_CP006692.1|WP_038393675.1|4282553_4283252_-|TIGR03761-family-integrating-conjugative-element-protein
MSDYTFNMGPLRSAIHIQLHTHNATRLWTGRRATENGPAPIIGMPRFIEILNQMRIAAEHNDPYADLWMLRMEEKLVQSRKLMQVMLDQAKAMFSELPEGIDIETCFNVQPARFPLFINAPLAYQGVYLLTDFDQLARQLLLASHIAVISRREMHNRLNNGATVIRSAFGLAQKYHGSGLTRQDFIDDTPQARAVTERLGPLPEAILSGKLRSSFSSPLPGKTENPGVADVE
>NZ_CP006692.1|WP_038393673.1|4282069_4282564_-|DUF3158-family-protein
MLNNPITGYQSLADEDYKMLAYVSSLKGLLKPFKSKGELELLESNARSVREMMEPLMQRLIQSARRYPVRQLPLIFTIGPAPSGANFLRWRNQQNNKSGTPAFCNLIGDPKIPQRTRDALLEIERDRIVFNMQMSVLTFIIRQARECQEKMDQAEILYQGRQNS
>NZ_CP006692.1|WP_038393672.1|4281745_4282021_+|hypothetical-protein
MQRAEGVTARVGLRAISVSSVNRKNWRLRTNGSRCYPVGTGKMQAVRADSETAVAWLSARNDTEQERKGCFARRERHEREPAKHAALLGAH
>NZ_CP006692.1|WP_038393671.1|4281087_4281504_-|DUF3577-domain-containing-protein
MNEKTYFNLYTSGLGYVNRVRTVTPKRGEPFLCCDIAALSGAADDVDYVRFDCKVTGSEARKLISRCEQAVNEKRKVLIHFRLGDLYVDMFTYSKGERKGETGVSLKARLLYIGLVKIDGEVVWQAGNQETETEADAA
>NZ_CP006692.1|WP_038393670.1|4280502_4280967_-|transcriptional-regulator
MARTTEWVITLLMLGGCTVPQQPPVPAPKPTTPPVPEVVRYDRYLLINTRPDEAQRNPLHQIVNINLPLNLKLTVGDAFAWLLKQSGYNLCADDHPTQFLAGKPLPLSQYRLGPMRLEEALKTLAGPSWLMQTDVLNREVCFHLNTPGTGDHHA
>NZ_CP006692.1|WP_038393668.1|4279901_4280510_-|hypothetical-protein
MLKRLAYLTTASVLTLLAAAMFWGFNRLNALTLAQQQTQRQITQWREQPQPDSDFQQLQTAVKNITGRTEALAKQLNDATSAQTEQLHPITEQIKALEGQIQTLNASYQHLQQQTATRSRATAKSPVPSPLWAAKAPFSLISSEFRAGRQFAVIAPSGYRSLSQLQLVAPGDSVQGWQLLQLDGSHATFRKGGQRLTLNAGG
>NZ_CP006692.1|WP_038393667.1|4279244_4279895_-|TIGR03759-family-integrating-conjugative-element-protein
MRRYLLLCLLLLPLFASPQQTRIEEQAVTHTQAQQWGLTDSEWLRYQQLRQGERGIWSPGLDPLTTLGVEADSDAERQRYAELLVRKEHQRVEKELAFQRAWDQAWKRLYPTLTPIRSVVQPRLALFVSEKCPACETLAQKLINDDRPLDIWLVNSRNDDANLQRWAQRQHIDMRKVERGQITLNHDNGRWQRLGGGKLPLLLEQQGEQWRPVSAP
>NZ_CP006692.1|WP_038393666.1|4278735_4279269_-|transglycosylase-SLT-domain-containing-protein
MASRLCSLIVGLLISTHACAVPPLYAQIARQQQVPAELLYAVARAESGTRLAQGLHPWPWTLNIAGTGYRYPSRSSACRALLAFARTRSLKLIDAGLGQINLGWNGQWFPSLCASFDPADNLTVTALLLRQHYNASPGSWLDAAAHYHHPTGGKPAAVYRQKISQQIRLLSASETSP
>NZ_CP006692.1|WP_038393678.1|4287509_4287806_+|helix-turn-helix-transcriptional-regulator
MNTVYPLKTINQLRPLLIGFRKVNGLTQMDIAERLGVTQQTYARLEANPSSASIERLFKVFTVLGVEIELSSPLASSTINSYKLTDKYRDSPARREKW
>NZ_CP006692.1|WP_038393679.1|4288176_4288437_-|hypothetical-protein
MATNRKHSCDPFPTHDGYDIDSFEDQTKLARKKYTQEELARITPRGKCITASKEDVFAIVLASAKKTKRPKDPIIEAIGSTYKLAK
>NZ_CP006692.1|WP_051683669.1|4288426_4289146_-|hypothetical-protein
MSKIISLNIKGKKMPDAENIQNAGIQALITTNDLLIQANKEFRVARLTNDDMHWCIASSRALPEEHRLPWDQNGGAINAPDAFNFSFKLLDIENRPAGACLCTYCPGVEQRENEEPSETGPILNVEMLQNFRIRDSELDGNTLKFALYAILFFIIETRCTGIRLIEPINDRIADYYIAQGFEDLTEGSKEILWRSSEDLLHWFQEGVAASESNSTIDSEQILGDNESSMNELDGGENGY
>NZ_CP006692.1|WP_038393681.1|4289237_4290371_-|helix-turn-helix-domain-containing-protein
MTPYIQALITMTGDKLQQRMQKDPETASDSLLFMGNQHDTVPRRLLQDPLLSPRDKFAWQVIRMQAQDNGGAVFPSYSELQVQLSNRPQDEKASRSTVSRALLMLRLTRWLSLCHKARDRVSGRILGNVYALHDEPLSVLDAVRFDASYLHLLEQCSRHENKAIRATAQGILYDIRQDTSLRYLSSRIELLEERARWQQRQSSEETKPETSGLDTVPGKISPGTESKPSRKPGPDGLVSNQDQAPVRTVPTDLCNSTTARANNSPPNWPPEIPLTHPEKQLVLQAMQNLPPSLRQEVLDDAAQRVARGGIQNPLAYLLATLRKAQDGEFNQFRRGKATGPEFVSPVVSEPEIPARPSQKRDISKLVAEIRAQCLGSG
>NZ_CP006692.1|WP_038393682.1|4290389_4290929_-|DUF2857-domain-containing-protein
MLPTINQAVLSQVIQALKDGNVRYCEALGFDREELNELNALTFEELMHLGNTSAQFLKITINHDVLCKMLVQVRQEQKFQQLVGQAVQLGGSIALISHYFGISTAEISARRRLMGIHVRQGRNQVPGEEEEAALWNRWQEIKVDNIDSIPALEAMMLLAQERSLSLTVVWNLIRQWEKS
>NZ_CP006692.1|WP_038393683.1|4290912_4292397_-|chromosome-partitioning-protein-ParB
MNNKLTSTELQSRLLQGNFDRGRSPDERFADPLMETSMIVTLEQLHPYDLNPRLMRNPNYDDIKESIRRRGLDTPPPITRRPDQEWYIIANGGNTRLSILNELWRETHDERFWRIQCLYKPWAGTSDQPMLGELRCLIGHLAENDMHGKLSFIERALGINKARELYQQVEKCQLSQRELAEHLKNDGYPINQSHISRMEQALEYLLPCIPEVLYAGMGRSQVEKLLSLRAASLHLWQRHAAENDDSFDNLFSSALSLFNDQPEDFAIERVQDELLGLMSQELNVDYNLLLLDVDPSEQKRQAVLGPTPEPPPYIPPEEPEPRPVTRRRKPETEEEEVGSPAPLPEPEEAPSLLCEGTEPVTDIWRIPQLWDTTESLRSASDRLAWDLAEHYAIDDRIISDANENGIGFRVMPFASDHPMFTRPQSRACWALLAALNEIPLTEDLASALTPGLFFQRDADGFFFSDLFLIKAFRLIRIVRRIKELQQEAQHAADD
>NZ_CP006692.1|WP_038393684.1|4292393_4293749_-|replicative-DNA-helicase
MSKRKRPQPPHSVEAEQSVLGGLMLDNDRWDDVATQIAAQDFFISAHRTIYSHMQTLVEQGNPIDLITLSESLEQQEQLEQVGGFAYLAELSKNTPSAANIIPYAQYIASYGELRQLLLLGNELSDMAGQPRSNVADVLNFAEQKLFAIAQSHQEGGLTDINACFDNVLAGIAQRYEAERGSLSGTPSGLEQLDALTCGFQPADLIIAAARPSVGKTAFALTLCVNALMLLPTQPVQIYSMEMSAEQLLLRLVSLIGRVSQTRLRSGDLSDDDWQQIGLSASILMNEWKDRLLLDDSGILTPSLLRSRARRSLRQYGLPSLIVVDYLQLMRSGGAENRNQEISTISRSLKALAKEFNCPVLALSQLNRALESRLNKRPCNADLRDSGSIEQDADVILFLYRDELYDPNTLDRGIAEVIVSKQRNGPIGTVRTRFISDQTRFESLSQQGVGS
>NZ_CP006692.1|WP_038393685.1|4293741_4294116_-|hypothetical-protein
MKRKIWRAFCSYYAQHPFEKDDEVIVFFEAADREEARETLPVLMSLLWHIPPEKLDCYNLEDENELRDTSGSLTAPRDWPLFEIGWSNNKPLYSSDLPLLLLPPHQQTRLWEAFLACQEGNRDE
>NZ_CP006692.1|WP_038393686.1|4294112_4294997_-|ParA-family-protein
MKNADALDLPTLIAAILSTKGGVAKTTDTANLGGYLADQGLKVLMIDADIRQPTLSSYYPLDNEAPGGIYELIAHNELDPAIIISHTSIPGLDIIISNDPRGELMSLLQAAPDGVIRLRHLVRQITGYDIILIDTIGARTIALEMVLLASDLIISPVLPEMLSAREFLRGTLQMYRDLQPFTRYGIPLPPLKAVINKLDHTNDAREIHHNLLQVLQHKQKEQELLVPTEILMTPVYASVVYRRAASLGLPVHRLDISRARGRATPCAAETMQMLAKELFPQFLALPHQKMEGIA
>NZ_CP006692.1|WP_038393687.1|4295387_4296134_-|class-I-SAM-dependent-methyltransferase
MDIPRIFSISESEHRIHNPFTPEKYATLGQVLRMKPGARILDLGSGSGEMLCTWARDYGITGTGIDMSPLFTTQAKRRAEELGISERVHFIHDDATDYTDEAKCDVAACVGATWIAGGVVGTVALLAKSLRPGGIILIGEPYWRQVMVTEEIAQACGVSSATDFLTLPDLVASFDQLGYDVVEMVLADKEGWDRYESAKWMTMRRWLDNNPDDDAAQEVRAELTAAPKRHVTWTREYLGWGVFALIAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006692_2	2.3\|2679322\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679322-2679353	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	53016-53047	3	0.906
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MN850591	Escherichia phage aalborv, complete genome	11324-11355	5	0.844
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NZ_CP015233	Epibacterium mobile F1926 plasmid unnamed3, complete sequence	52483-52514	6	0.812
NZ_CP006692_1	1.4\|2662381\|32\|NZ_CP006692\|CRISPRCasFinder,CRT,PILER-CR	2662381-2662412	32	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	1287671-1287702	7	0.781
NZ_CP006692_2	2.11\|2679811\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679811-2679842	32	NC_019790	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence	73544-73575	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MN850643	Escherichia phage tiwna, complete genome	24864-24895	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	KC710998	Shigella phage pSf-1, complete genome	43902-43933	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MN850569	Escherichia phage vojen, complete genome	28855-28886	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NC_049817	Escherichia phage tonnikala, complete genome	43426-43457	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NC_049830	Escherichia phage PGN590, complete genome	30113-30144	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MN994500	Phage NBSal001, complete genome	7010-7041	7	0.781
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MT360681	Shigella virus 2019SD1, complete genome	18172-18203	7	0.781
NZ_CP006692_2	2.2\|2679261\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679261-2679292	32	MN693725	Marine virus AFVG_250M494, complete genome	11782-11813	8	0.75
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	MT774389	CrAssphage cr116_1, complete genome	52672-52703	8	0.75
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	719790-719821	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	MN694208	Marine virus AFVG_250M460, complete genome	13196-13227	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	KT997868	Uncultured Mediterranean phage uvDeep-CGR2-KM24-C165, complete genome	130-161	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	AP014115	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S23-C51, * SEQUENCING IN PROGRESS *	28922-28953	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	MN693287	Marine virus AFVG_25M168, complete genome	30100-30131	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	AP013551	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, * SEQUENCING IN PROGRESS *, 2 ordered pieces	27096-27127	8	0.75
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	AP013552	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, * SEQUENCING IN PROGRESS *, 7 ordered pieces	4251-4282	8	0.75
NZ_CP006692_2	2.9\|2679688\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679688-2679719	32	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	110227-110258	8	0.75
NZ_CP006692_2	2.12\|2679872\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679872-2679903	32	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	64705-64736	8	0.75
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP035936	Acinetobacter cumulans strain WCHAc060092 plasmid p1_060092, complete sequence	75079-75110	8	0.75
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MK778457	Escherichia phage vB_EcoS_W011D, complete genome	38857-38888	8	0.75
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NC_049819	Escherichia phage atuna, complete genome	14278-14309	8	0.75
NZ_CP006692_2	2.14\|2679994\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679994-2680025	32	MN694098	Marine virus AFVG_250M415, complete genome	32929-32960	8	0.75
NZ_CP006692_1	1.7\|2662564\|32\|NZ_CP006692\|CRISPRCasFinder,CRT,PILER-CR	2662564-2662595	32	AP014395	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S45-C86, * SEQUENCING IN PROGRESS *	25674-25705	9	0.719
NZ_CP006692_1	1.13\|2662930\|32\|NZ_CP006692\|CRISPRCasFinder,CRT,PILER-CR	2662930-2662961	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	23018-23049	9	0.719
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	NZ_CP032280	Acinetobacter sp. WCHA55 plasmid p1_010055, complete sequence	17605-17636	9	0.719
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	MN694657	Marine virus AFVG_250M407, complete genome	21193-21224	9	0.719
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	MN693833	Marine virus AFVG_250M459, complete genome	21321-21352	9	0.719
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	AP014119	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S41-C69, * SEQUENCING IN PROGRESS *	33137-33168	9	0.719
NZ_CP006692_2	2.8\|2679627\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679627-2679658	32	MG757153	Streptomyces phage BillNye, complete genome	52886-52917	9	0.719
NZ_CP006692_2	2.8\|2679627\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679627-2679658	32	MK620896	Streptomyces phage Circinus, complete genome	53025-53056	9	0.719
NZ_CP006692_2	2.10\|2679749\|33\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679749-2679781	33	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	61525-61557	9	0.727
NZ_CP006692_2	2.11\|2679811\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679811-2679842	32	MH029512	Siphoviridae environmental samples clone NHS-Seq1, complete sequence	46466-46497	9	0.719
NZ_CP006692_1	1.8\|2662625\|32\|NZ_CP006692\|CRISPRCasFinder,CRT,PILER-CR	2662625-2662656	32	NZ_CP017423	Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence	106516-106547	10	0.688
NZ_CP006692_1	1.16\|2663115\|32\|NZ_CP006692\|CRISPRCasFinder,CRT,PILER-CR	2663115-2663146	32	NZ_CP012161	Octadecabacter temperatus strain SB1 plasmid OSB_p1, complete sequence	73-104	10	0.688
NZ_CP006692_2	2.4\|2679383\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679383-2679414	32	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	22327-22358	10	0.688
NZ_CP006692_2	2.4\|2679383\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679383-2679414	32	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	33043-33074	10	0.688
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	16510-16541	10	0.688
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NZ_CP016707	Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109A, complete sequence	33826-33857	10	0.688
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NZ_CP051521	Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence	65560-65591	10	0.688
NZ_CP006692_2	2.5\|2679444\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679444-2679475	32	NZ_CP016685	Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence	36955-36986	10	0.688
NZ_CP006692_2	2.7\|2679566\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679566-2679597	32	MN692986	Marine virus AFVG_117M62, complete genome	1931-1962	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP010232	Escherichia coli strain S30 plasmid A, complete sequence	138168-138199	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_LS992167	Escherichia coli isolate Escherichia coli str. TO6 plasmid 2, complete sequence	91985-92016	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP019282	Escherichia coli strain 13P484A plasmid p13P484A-2, complete sequence	46585-46616	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP039714	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014853 plasmid p09-3649.1, complete sequence	35223-35254	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP034739	Escherichia coli strain L65 plasmid pL65-2, complete sequence	62741-62772	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP051220	Escherichia coli strain SFE8 plasmid pSCZP1, complete sequence	37358-37389	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP019247	Escherichia coli strain Combat13F7 plasmid pCombat13F7-2, complete sequence	46395-46426	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP041415	Escherichia coli strain STEC719 plasmid pSTEC719_4, complete sequence	46210-46241	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP049355	Escherichia coli strain T28R plasmid pT28R-2, complete sequence	39651-39682	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP027357	Escherichia coli strain 2013C-4991 plasmid unnamed2	15993-16024	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP047878	Escherichia coli strain LD22-1 plasmid pLD22-1-135kb, complete sequence	43267-43298	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_AP019676	Escherichia coli strain GSH8M-2 plasmid pGSH8M-2-1, complete sequence	43345-43376	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP010241	Escherichia coli strain C7 plasmid A, complete sequence	2318-2349	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP023389	Escherichia coli strain 1105 plasmid p74, complete sequence	11140-11171	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	KU932032	Escherichia coli plasmid pEC16I_1, complete sequence	42422-42453	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	KU932033	Escherichia coli plasmid pEC16I_2, complete sequence	43477-43508	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NC_025175	Escherichia coli plasmid pH2332-166, complete sequence	126938-126969	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP010120	Escherichia coli strain C3 plasmid A, complete sequence	60025-60056	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP024129	Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence	115626-115657	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP042586	Escherichia coli strain LD91-1 plasmid pLD91-1-146kb, complete sequence	43267-43298	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP030282	Escherichia coli strain E308 plasmid pLKSZ01, complete sequence	78854-78885	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	MN823988	Escherichia coli strain 14406 plasmid p14406-FII, complete sequence	67117-67148	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP047667	Escherichia coli strain LD26-1 plasmid pLD26-1-135kb, complete sequence	107547-107578	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP029837	Salmonella enterica subsp. enterica serovar Typhimurium strain 10ST07093 plasmid p10ST07093A, complete sequence	79527-79558	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP048026	Escherichia coli strain GZEC065 plasmid pTEM1-GZEC065, complete sequence	58120-58151	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP051224	Escherichia coli strain SCZE5 plasmid pSCZE2	38877-38908	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP029842	Salmonella enterica subsp. enterica serovar Typhimurium strain 01ST04081 plasmid p01ST04081B, complete sequence	15596-15627	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MK416151	Escherichia coli strain 6TC9eCTX plasmid pHNTC9e, complete sequence	97921-97952	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_CP045951	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00010529 plasmid pAUSMDU00010529_02, complete sequence	13525-13556	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MH422553	Escherichia coli strain L-I1 plasmid pIncI1, complete sequence	16027-16058	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MK070495	Escherichia coli strain MB6212 plasmid pMB5876, complete sequence	81419-81450	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MG014722	Escherichia coli strain P2-3 plasmid pP2-3T, complete sequence	219153-219184	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MF589339	Escherichia coli strain 2271 plasmid pCTXM-2271, complete sequence	116748-116779	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	NZ_MG385063	Escherichia coli strain WF5-29 plasmid pWF5-29, complete sequence	156343-156374	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	KJ021043	UNVERIFIED: Klebsiella phage Kpn112, complete genome	24420-24451	10	0.688
NZ_CP006692_2	2.13\|2679933\|32\|NZ_CP006692\|PILER-CR,CRISPRCasFinder,CRT	2679933-2679964	32	JX866719	Klebsiella phage JD001, complete genome	25470-25501	10	0.688

1. spacer 2.3|2679322|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

ctggcaggcgggtgagttgctggaagcgatta	CRISPR spacer
ctggcaggcgggagagttgctggaggcgatca	Protospacer
************ ***********.*****.*

2. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN850591 (Escherichia phage aalborv, complete genome) position: , mismatch: 5, identity: 0.844

gcaaat--aaatcacagattgctgattatattaa	CRISPR spacer
--aaattgaaatcacagattggtgatgatattca	Protospacer
  ****  ************* **** ***** *

3. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015233 (Epibacterium mobile F1926 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

tcgcgcaggaattgggaagctgcca--ataccga	CRISPR spacer
tcgcgcaggaattgggcagcggccatcttgcc--	Protospacer
**************** *** ****   *.**

4. spacer 1.4|2662381|32|NZ_CP006692|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gtactgatggg-cggtagcaccgcgcctgtgga	CRISPR spacer
-cttggatgggtcggtagcaccgcgcctctggc	Protospacer
 . . ****** **************** ***

5. spacer 2.11|2679811|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_019790 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence) position: , mismatch: 7, identity: 0.781

cagcgttgaccaaccctgcgccgcctcatcat	CRISPR spacer
cagcgttgaccagcccggcgccgcaacctgag	Protospacer
************.*** *******  * * *

6. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN850643 (Escherichia phage tiwna, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattaaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

7. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to KC710998 (Shigella phage pSf-1, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

8. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN850569 (Escherichia phage vojen, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

9. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_049817 (Escherichia phage tonnikala, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattaaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

10. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_049830 (Escherichia phage PGN590, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

11. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN994500 (Phage NBSal001, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

12. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MT360681 (Shigella virus 2019SD1, complete genome) position: , mismatch: 7, identity: 0.781

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatattca	Protospacer
* *   ************* **** ***** *

13. spacer 2.2|2679261|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN693725 (Marine virus AFVG_250M494, complete genome) position: , mismatch: 8, identity: 0.75

agttctgatctgacgtaatactcaggggcttg	CRISPR spacer
atttctgatatgccgtaatactcaggtctata	Protospacer
* ******* ** *************  . *.

14. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MT774389 (CrAssphage cr116_1, complete genome) position: , mismatch: 8, identity: 0.75

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
gctatgaagaattgggaagatgccaatacaga	Protospacer
 *    *.*********** ********* **

15. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.75

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
tcgcgcaggaattgggaatcagcgagaacacg	Protospacer
****************** * ** *. **  .

16. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN694208 (Marine virus AFVG_250M460, complete genome) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
taggtttattaaatcctgatacacctgctctt	Protospacer
**.******************** .*. *..

17. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to KT997868 (Uncultured Mediterranean phage uvDeep-CGR2-KM24-C165, complete genome) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
ggaactctttaaatcctgatacagataattca	Protospacer
 .*..*. **************** ******.

18. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to AP014115 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S23-C51, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
ggaactctttaaatcctgatacagataattca	Protospacer
 .*..*. **************** ******.

19. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN693287 (Marine virus AFVG_25M168, complete genome) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg---	CRISPR spacer
ctagattattaaatcctgatacatt---ttcaaaa	Protospacer
. ** ****************** *   ***.

20. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to AP013551 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
gaaactctttaaatccagatacagataattca	Protospacer
 **..*. ******** ******* ******.

21. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to AP013552 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.75

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
gaaactctttaaatccagatacagataattca	Protospacer
 **..*. ******** ******* ******.

22. spacer 2.9|2679688|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 8, identity: 0.75

-gcgatgatttgttccagttttgacggctgagg	CRISPR spacer
cacca-agcttgtaccagatttgacggctgagg	Protospacer
 .* * ...**** **** **************

23. spacer 2.12|2679872|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ctggaggagaaggaagcggcgctattattaat	CRISPR spacer
ctggaggagaagcaagaggcgctcgatcgaat	Protospacer
************ *** ******    . ***

24. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035936 (Acinetobacter cumulans strain WCHAc060092 plasmid p1_060092, complete sequence) position: , mismatch: 8, identity: 0.75

gcaaataaatcacagattgctgattatattaa----	CRISPR spacer
aaaattaaatcacagattgatgat----ttaagctt	Protospacer
. ** ************** ****    ****

25. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MK778457 (Escherichia phage vB_EcoS_W011D, complete genome) position: , mismatch: 8, identity: 0.75

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattgaaatcacagattggtgatgatatcca	Protospacer
* *   ************* **** ****. *

26. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_049819 (Escherichia phage atuna, complete genome) position: , mismatch: 8, identity: 0.75

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
gaattaaaatcacagattggtgatgatataca	Protospacer
* *   ************* **** ****  *

27. spacer 2.14|2679994|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN694098 (Marine virus AFVG_250M415, complete genome) position: , mismatch: 8, identity: 0.75

aagaggtaaataccgcgcattttttagatgcg	CRISPR spacer
catcgacaaatcccgcgtattttttagatgca	Protospacer
 *  *..**** *****.*************.

28. spacer 1.7|2662564|32|NZ_CP006692|CRISPRCasFinder,CRT,PILER-CR matches to AP014395 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S45-C86, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

tcttttaaatatcttccttcaaaaggctgtga	CRISPR spacer
aatttaaaatatcttcctttaaaagttgtaga	Protospacer
  *** *************.***** .   **

29. spacer 1.13|2662930|32|NZ_CP006692|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

catcgcacaatttttccgcaatctgttttgcg	CRISPR spacer
gatcgcgcaatttttccgcgatctgaagatag	Protospacer
 *****.************.*****      *

30. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032280 (Acinetobacter sp. WCHA55 plasmid p1_010055, complete sequence) position: , mismatch: 9, identity: 0.719

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
tgcgttttttaaagcctgatacagttttcttt	Protospacer
*. **** ***** ************  .*.

31. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN694657 (Marine virus AFVG_250M407, complete genome) position: , mismatch: 9, identity: 0.719

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
taggtttattgaatcctgatacacctgctctt	Protospacer
**.*******.************ .*. *..

32. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN693833 (Marine virus AFVG_250M459, complete genome) position: , mismatch: 9, identity: 0.719

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
taggtttattgaatcctgatacacctgctctt	Protospacer
**.*******.************ .*. *..

33. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to AP014119 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S41-C69, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
ggaactctttaaatcctgatacggataattca	Protospacer
 .*..*. **************.* ******.

34. spacer 2.8|2679627|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MG757153 (Streptomyces phage BillNye, complete genome) position: , mismatch: 9, identity: 0.719

caataactcctctctgggaattactgaagact	CRISPR spacer
cgtgaactacgctctgggaattactgacgttg	Protospacer
*.  **** * **************** * .

35. spacer 2.8|2679627|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MK620896 (Streptomyces phage Circinus, complete genome) position: , mismatch: 9, identity: 0.719

caataactcctctctgggaattactgaagact	CRISPR spacer
cgtgaactacgctctgggaattactgacgttg	Protospacer
*.  **** * **************** * .

36. spacer 2.10|2679749|33|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gttagatagtggctgtaggtcagtgccatcagc	CRISPR spacer
gtcgccagttggctgtaggtcagtgcgatctgc	Protospacer
**..   . ***************** *** **

37. spacer 2.11|2679811|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MH029512 (Siphoviridae environmental samples clone NHS-Seq1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcgttgaccaaccctgcgccgcctcatcat	CRISPR spacer
gaataccgaccaaccctgcgccatctcatctt	Protospacer
 *.....***************..****** *

38. spacer 1.8|2662625|32|NZ_CP006692|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017423 (Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence) position: , mismatch: 10, identity: 0.688

tggagttcgcgtatacccgtccggaagaaaga	CRISPR spacer
ccgcgttcgtgtatacccgcccggaagtggac	Protospacer
. * *****.*********.******* ...

39. spacer 1.16|2663115|32|NZ_CP006692|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012161 (Octadecabacter temperatus strain SB1 plasmid OSB_p1, complete sequence) position: , mismatch: 10, identity: 0.688

tggcaacaaagagccagaaaagagcgcagagc	CRISPR spacer
aagcaacaaagagcgggaaaagagcaaccatg	Protospacer
 .************ .*********.   *

40. spacer 2.4|2679383|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttaaaaatggtactactcaattaaccacacgc	CRISPR spacer
ataaaaaaggtactactcatttaacatttttg	Protospacer
 ****** *********** *****  . .

41. spacer 2.4|2679383|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttaaaaatggtactactcaattaaccacacgc	CRISPR spacer
ataaaaaaggtactactcatttaacatttttg	Protospacer
 ****** *********** *****  . .

42. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_019431 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
aacatcaggaatggggaagctgtcaataatgg	Protospacer
     ******* *********.***** .*.

43. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016707 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109A, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
aacatcaggaatggggaagctgtcaataatgg	Protospacer
     ******* *********.***** .*.

44. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051521 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
aacatcaggaatggggaagctgtcaataatgg	Protospacer
     ******* *********.***** .*.

45. spacer 2.5|2679444|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016685 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgcaggaattgggaagctgccaataccga	CRISPR spacer
aacatcaggaatggggaagctgtcaataatgg	Protospacer
     ******* *********.***** .*.

46. spacer 2.7|2679566|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN692986 (Marine virus AFVG_117M62, complete genome) position: , mismatch: 10, identity: 0.688

taagtttattaaatcctgatacagttaattcg	CRISPR spacer
atccttttttaaatcctgatacagataaagta	Protospacer
    *** **************** ***  ..

47. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010232 (Escherichia coli strain S30 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

48. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LS992167 (Escherichia coli isolate Escherichia coli str. TO6 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

49. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019282 (Escherichia coli strain 13P484A plasmid p13P484A-2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

50. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039714 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014853 plasmid p09-3649.1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

51. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034739 (Escherichia coli strain L65 plasmid pL65-2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

52. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051220 (Escherichia coli strain SFE8 plasmid pSCZP1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

53. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019247 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

54. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041415 (Escherichia coli strain STEC719 plasmid pSTEC719_4, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

55. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049355 (Escherichia coli strain T28R plasmid pT28R-2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

56. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027357 (Escherichia coli strain 2013C-4991 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

57. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047878 (Escherichia coli strain LD22-1 plasmid pLD22-1-135kb, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

58. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019676 (Escherichia coli strain GSH8M-2 plasmid pGSH8M-2-1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

59. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010241 (Escherichia coli strain C7 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

60. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023389 (Escherichia coli strain 1105 plasmid p74, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

61. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to KU932032 (Escherichia coli plasmid pEC16I_1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

62. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to KU932033 (Escherichia coli plasmid pEC16I_2, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

63. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NC_025175 (Escherichia coli plasmid pH2332-166, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

64. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010120 (Escherichia coli strain C3 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

65. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024129 (Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

66. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042586 (Escherichia coli strain LD91-1 plasmid pLD91-1-146kb, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

67. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030282 (Escherichia coli strain E308 plasmid pLKSZ01, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

68. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to MN823988 (Escherichia coli strain 14406 plasmid p14406-FII, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

69. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047667 (Escherichia coli strain LD26-1 plasmid pLD26-1-135kb, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

70. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029837 (Salmonella enterica subsp. enterica serovar Typhimurium strain 10ST07093 plasmid p10ST07093A, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

71. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048026 (Escherichia coli strain GZEC065 plasmid pTEM1-GZEC065, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

72. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051224 (Escherichia coli strain SCZE5 plasmid pSCZE2) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

73. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029842 (Salmonella enterica subsp. enterica serovar Typhimurium strain 01ST04081 plasmid p01ST04081B, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

74. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK416151 (Escherichia coli strain 6TC9eCTX plasmid pHNTC9e, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

75. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045951 (Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00010529 plasmid pAUSMDU00010529_02, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

76. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH422553 (Escherichia coli strain L-I1 plasmid pIncI1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

77. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK070495 (Escherichia coli strain MB6212 plasmid pMB5876, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

78. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG014722 (Escherichia coli strain P2-3 plasmid pP2-3T, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

79. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF589339 (Escherichia coli strain 2271 plasmid pCTXM-2271, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

80. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG385063 (Escherichia coli strain WF5-29 plasmid pWF5-29, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
ctgaataaatccaagattgctgattaattcgg	Protospacer
 ..********  *************  *...

81. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to KJ021043 (UNVERIFIED: Klebsiella phage Kpn112, complete genome) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
acaaatgaatcacagattgctaatctgctctt	Protospacer
.*****.**************.**.   *.

82. spacer 2.13|2679933|32|NZ_CP006692|PILER-CR,CRISPRCasFinder,CRT matches to JX866719 (Klebsiella phage JD001, complete genome) position: , mismatch: 10, identity: 0.688

gcaaataaatcacagattgctgattatattaa	CRISPR spacer
acaaatgaatcacagattgctaatctgctctt	Protospacer
.*****.**************.**.   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2034482 : 2043070

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038392128.1\|2034482_2036516_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	27.4
WP_038392130.1\|2036781_2037240_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-51	69.3
WP_020844709.1\|2037378_2037849_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.5e-76	91.7
WP_038392132.1\|2037895_2038615_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272843.1\|2038611_2040297_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.6e-274	89.3
WP_001240383.1\|2040519_2041260_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.3e-100	88.1
WP_001234243.1\|2041319_2041427_+	protein YohO	NA	NA	NA	NA
WP_000824740.1\|2041407_2042139_-	ABC transporter permease	NA	NA	NA	NA
WP_020844710.1\|2042122_2043070_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.2e-10	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006692

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection