CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007799	Escherichia coli Nissle 1917 chromosome, complete genome	4 crisprs	cas14j,DinG,cas3,DEDDh,csa3,c2c9_V-U4,WYL	1	2	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007799_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007799_1

2606114-2606227

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007799_1

>merge|NZ_CP007799|1|2606114-2606227|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>NZ_CP007799|1|1|2606114-2606227|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007799.1\|WP_001297934.1\|2593243_2593867_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP007799.1\|WP_000786563.1\|2585016_2586201_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP007799.1\|WP_000135040.1\|2607381_2607636_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP007799.1\|WP_000857226.1\|2611254_2612883_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP007799.1\|WP_001000377.1\|2614128_2615319_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP007799.1\|WP_000992976.1\|2616478_2617282_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	unknown	unknown	gnl\|CDD\|182257
NZ_CP007799.1\|WP_016265893.1\|2599336_2603095_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP007799.1\|WP_001104503.1\|2587055_2588705_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP007799.1\|WP_000779093.1\|2608542_2609619_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP007799.1\|WP_001209933.1\|2612872_2614132_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP007799.1\|WP_000301034.1\|2607689_2608340_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP007799.1\|WP_001537808.1\|2588705_2593100_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP007799.1\|WP_000140607.1\|2615511_2616438_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP007799.1\|WP_000990760.1\|2598474_2599197_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP007799.1\|WP_001281253.1\|2595700_2598328_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP007799.1\|WP_000948732.1\|2609623_2610982_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP007799.1\|WP_001075170.1\|2603776_2606062_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP007799.1\|WP_001225880.1\|2586274_2587051_-\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP007799.1\|WP_000332036.1\|2606251_2607382_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP007799.1\|WP_000012318.1\|2593863_2595552_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030

Protein	Function_ID	Function_description	E-value
NZ_CP007799.1\|WP_001297934.1\|2593243_2593867_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139
NZ_CP007799.1\|WP_000786563.1\|2585016_2586201_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP007799.1\|WP_000135040.1\|2607381_2607636_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP007799.1\|WP_000857226.1\|2611254_2612883_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP007799.1\|WP_001000377.1\|2614128_2615319_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP007799.1\|WP_000992976.1\|2616478_2617282_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
NZ_CP007799.1\|WP_016265893.1\|2599336_2603095_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP007799.1\|WP_001104503.1\|2587055_2588705_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.66557e-125
NZ_CP007799.1\|WP_000779093.1\|2608542_2609619_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP007799.1\|WP_001209933.1\|2612872_2614132_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP007799.1\|WP_000301034.1\|2607689_2608340_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.02722e-157
NZ_CP007799.1\|WP_001537808.1\|2588705_2593100_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP007799.1\|WP_000140607.1\|2615511_2616438_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP007799.1\|WP_000990760.1\|2598474_2599197_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	3.80247e-169
NZ_CP007799.1\|WP_001281253.1\|2595700_2598328_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP007799.1\|WP_000948732.1\|2609623_2610982_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP007799.1\|WP_001075170.1\|2603776_2606062_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP007799.1\|WP_001225880.1\|2586274_2587051_-\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	2.9978e-151
NZ_CP007799.1\|WP_000332036.1\|2606251_2607382_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP007799.1\|WP_000012318.1\|2593863_2595552_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0

>NZ_CP007799.1|WP_001075170.1|2603776_2606062_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP007799.1|WP_016265893.1|2599336_2603095_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIISLRKEYLSLLPSMIASLFSANGAAAVIDSCQGYDIKANCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTAVVINPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLTGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVSVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP007799.1|WP_000990760.1|2598474_2599197_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASHWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVVQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP007799.1|WP_001281253.1|2595700_2598328_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP007799.1|WP_000012318.1|2593863_2595552_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPKKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGRCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP007799.1|WP_001297934.1|2593243_2593867_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP007799.1|WP_001537808.1|2588705_2593100_-|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAIVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGVRFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEIMLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMLPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWTGMQVK
>NZ_CP007799.1|WP_001104503.1|2587055_2588705_-|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIDVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWATGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAFKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP007799.1|WP_001225880.1|2586274_2587051_-|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEYAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP007799.1|WP_000786563.1|2585016_2586201_+|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSTIDLGATVIKAAIERAKIDSLHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESSALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFEPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>NZ_CP007799.1|WP_000332036.1|2606251_2607382_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_CP007799.1|WP_000135040.1|2607381_2607636_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP007799.1|WP_000301034.1|2607689_2608340_-|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKVEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP007799.1|WP_000779093.1|2608542_2609619_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP007799.1|WP_000948732.1|2609623_2610982_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_CP007799.1|WP_000857226.1|2611254_2612883_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAEAIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP007799.1|WP_001209933.1|2612872_2614132_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLIIDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFVVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHVAQQIAQRAGGQQ
>NZ_CP007799.1|WP_001000377.1|2614128_2615319_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP007799.1|WP_000140607.1|2615511_2616438_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>NZ_CP007799.1|WP_000992976.1|2616478_2617282_-|2-keto-3-deoxy-L-rhamnonate-aldolase
MNALLTNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRVKGSY

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Crispr_ID: NZ_CP007799_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007799_2

4968147-4968293

Orphan

Consensus_repeat	Method
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007799_2

>merge|NZ_CP007799|2|4968147-4968293|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP007799|2|2|4968147-4968293|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGC
GTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007799.1\|WP_001346533.1\|4958591_4959812_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP007799.1\|WP_000991462.1\|4976053_4977034_-\|9-O-acetyl-N-acetylneuraminic-acid-deacetylase	unknown	unknown	gnl\|CDD\|377084
NZ_CP007799.1\|WP_000044711.1\|4981487_4982084_+\|type-1-fimbria-regulatory-protein-FimE	unknown	unknown	gnl\|CDD\|182126
NZ_CP007799.1\|WP_000061768.1\|4974177_4975197_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP007799.1\|WP_001298035.1\|4962746_4963250_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007799.1\|WP_000012936.1\|4960986_4961991_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP007799.1\|WP_001295681.1\|4971207_4972290_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP007799.1\|WP_001295733.1\|4977098_4978205_-\|N-acetylneuraminate-epimerase	unknown	unknown	gnl\|CDD\|237617
NZ_CP007799.1\|WP_000786398.1\|4967532_4967976_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP007799.1\|WP_000584109.1\|4970107_4971208_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP007799.1\|WP_001298046.1\|4955160_4956564_-\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP007799.1\|WP_000635216.1\|4960489_4960942_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP007799.1\|WP_000397144.1\|4968329_4969841_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP007799.1\|WP_000790583.1\|4980407_4981010_+\|type-1-fimbria-regulatory-protein-FimB	unknown	unknown	gnl\|CDD\|182125
NZ_CP007799.1\|WP_000235828.1\|4956620_4957625_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NZ_CP007799.1\|WP_000428627.1\|4957648_4958581_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NZ_CP007799.1\|WP_000416368.1\|4964677_4967533_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP007799.1\|WP_001295734.1\|4978224_4978941_-\|N-acetylneuraminic-acid-outer-membrane-channel-NanC	unknown	unknown	gnl\|CDD\|368776
NZ_CP007799.1\|WP_001332879.1\|4972545_4974048_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP007799.1\|WP_000002950.1\|4962152_4962569_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876

Protein	Function_ID	Function_description	E-value
NZ_CP007799.1\|WP_001346533.1\|4958591_4959812_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP007799.1\|WP_000991462.1\|4976053_4977034_-\|9-O-acetyl-N-acetylneuraminic-acid-deacetylase	gnl\|CDD\|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	2.28189e-19
NZ_CP007799.1\|WP_000044711.1\|4981487_4982084_+\|type-1-fimbria-regulatory-protein-FimE	gnl\|CDD\|182126	PRK09871, PRK09871, tyrosine recombinase; Provisional.	1.35645e-130
NZ_CP007799.1\|WP_000061768.1\|4974177_4975197_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	6.7524e-167
NZ_CP007799.1\|WP_001298035.1\|4962746_4963250_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
NZ_CP007799.1\|WP_000012936.1\|4960986_4961991_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP007799.1\|WP_001295681.1\|4971207_4972290_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP007799.1\|WP_001295733.1\|4977098_4978205_-\|N-acetylneuraminate-epimerase	gnl\|CDD\|237617	PRK14131, PRK14131, N-acetylneuraminate epimerase.	0
NZ_CP007799.1\|WP_000786398.1\|4967532_4967976_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	1.88895e-65
NZ_CP007799.1\|WP_000584109.1\|4970107_4971208_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP007799.1\|WP_001298046.1\|4955160_4956564_-\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP007799.1\|WP_000635216.1\|4960489_4960942_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
NZ_CP007799.1\|WP_000397144.1\|4968329_4969841_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP007799.1\|WP_000790583.1\|4980407_4981010_+\|type-1-fimbria-regulatory-protein-FimB	gnl\|CDD\|182125	PRK09870, PRK09870, tyrosine recombinase; Provisional.	2.86365e-146
NZ_CP007799.1\|WP_000235828.1\|4956620_4957625_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NZ_CP007799.1\|WP_000428627.1\|4957648_4958581_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NZ_CP007799.1\|WP_000416368.1\|4964677_4967533_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP007799.1\|WP_001295734.1\|4978224_4978941_-\|N-acetylneuraminic-acid-outer-membrane-channel-NanC	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	2.4383e-21
NZ_CP007799.1\|WP_001332879.1\|4972545_4974048_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP007799.1\|WP_000002950.1\|4962152_4962569_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	7.57352e-69

>NZ_CP007799.1|WP_000786398.1|4967532_4967976_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTCFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP007799.1|WP_000416368.1|4964677_4967533_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDIYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP007799.1|WP_001298035.1|4962746_4963250_-|GNAT-family-N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>NZ_CP007799.1|WP_000002950.1|4962152_4962569_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGDDGDDEDFVDEDDDGIRH
>NZ_CP007799.1|WP_000012936.1|4960986_4961991_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>NZ_CP007799.1|WP_000635216.1|4960489_4960942_+|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>NZ_CP007799.1|WP_001346533.1|4958591_4959812_-|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>NZ_CP007799.1|WP_000428627.1|4957648_4958581_-|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPHNHA
>NZ_CP007799.1|WP_000235828.1|4956620_4957625_-|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD
>NZ_CP007799.1|WP_001298046.1|4955160_4956564_-|YfcC-family-protein
MGKFKFPTAYTILFVLIALVAAMTWIVPAGKYQMVTNAALGKEVPVAGTYAPVEAQPQGITAVLLAPIDGLYNHQTYTAGAIDVALFVLIIGGFLGVVNKTGAIDAGIERVTTRLNGREEWMIPILMALFAAGGTIYGMAEESLPFYTLLVPVMMAARFDPLVAAATVLLGSGIGTLGSTINPFATVIAANAAGIPFTQGILLRVILLLVGYVICVYWVMRYARKVRNSPESSIVADKMAENQAHFLGNRSETMLEFTPTRKAILILFAASFAFMIYGVAVLGWWMAEISAVFLAAAVIVGVIARMGEETFTSTFIDGARDLLGVALIIGIARGIVVVMDNGMITHTILHSAENLVSGLSTTVFINVTYWLEVLLSFLVPSSSGLAVLTMPIMAPLADFAHVQRDLVVTAYQSASGVVNLITPTSAVVMGGLAIARVPWVRYLRWVAPLLLILTMLNMIVLSIAAMI
>NZ_CP007799.1|WP_000397144.1|4968329_4969841_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP007799.1|WP_000584109.1|4970107_4971208_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMCTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP007799.1|WP_001295681.1|4971207_4972290_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP007799.1|WP_001332879.1|4972545_4974048_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDLMRTDANGKGVINILSAEKLYQMPKLYAASLLWMISELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP007799.1|WP_000061768.1|4974177_4975197_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDTCISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGTDKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>NZ_CP007799.1|WP_000991462.1|4976053_4977034_-|9-O-acetyl-N-acetylneuraminic-acid-deacetylase
MNAIISPNYYYVLTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFTHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPHNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQFHSQLNNITAAPWFCGDTTWYWKENFPHAYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYFGSAYRSAENWTTSLRSSHFSAAARRGIISDRFVEAILQFWRER
>NZ_CP007799.1|WP_001295733.1|4977098_4978205_-|N-acetylneuraminate-epimerase
MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGDLYVFGGIGKNSKGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGDNLKWNRLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGESAGGKAVTDSVLISVKDNKVTVQN
>NZ_CP007799.1|WP_001295734.1|4978224_4978941_-|N-acetylneuraminic-acid-outer-membrane-channel-NanC
MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL
>NZ_CP007799.1|WP_000790583.1|4980407_4981010_+|type-1-fimbria-regulatory-protein-FimB
MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL
>NZ_CP007799.1|WP_000044711.1|4981487_4982084_+|type-1-fimbria-regulatory-protein-FimE
MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV

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Crispr_ID: NZ_CP007799_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007799_3

5051059-5051193

Orphan

Consensus_repeat	Method
TGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007799_3

>merge|NZ_CP007799|3|5051059-5051193|CRISPRCasFinder
TGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGAGGCAGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCG

>NZ_CP007799|3|3|5051059-5051193|CRISPRCasFinder
TGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCG	AGGCAGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCT
TGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007799.1\|WP_038427188.1\|5058582_5059599_-\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP007799.1\|WP_000477811.1\|5054753_5056076_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP007799.1\|WP_000566155.1\|5058287_5058551_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP007799.1\|WP_000816471.1\|5056127_5057351_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP007799.1\|WP_001088378.1\|5051204_5052068_-\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NZ_CP007799.1\|WP_000124615.1\|5059626_5060271_-\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP007799.1\|WP_001272323.1\|5043414_5044446_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	unknown	unknown	gnl\|CDD\|181902
NZ_CP007799.1\|WP_000563058.1\|5050226_5051009_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP007799.1\|WP_001143194.1\|5052039_5053590_-\|YjjI-family-glycine-radical-enzyme	unknown	unknown	gnl\|CDD\|182879
NZ_CP007799.1\|WP_001132956.1\|5060376_5061345_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP007799.1\|WP_000870700.1\|5045391_5046069_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865
NZ_CP007799.1\|WP_001092461.1\|5044930_5045377_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NZ_CP007799.1\|WP_000175943.1\|5046159_5047749_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP007799.1\|WP_001299799.1\|5049156_5050230_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013
NZ_CP007799.1\|WP_000490275.1\|5048873_5049035_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP007799.1\|WP_001295748.1\|5048141_5048747_+\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
NZ_CP007799.1\|WP_000224879.1\|5057407_5058127_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP007799.1\|WP_000204018.1\|5044548_5044962_+\|DNA-polymerase-III-subunit-psi	unknown	unknown	gnl\|CDD\|180735
NZ_CP007799.1\|WP_001350368.1\|5042526_5042763_+\|DUF1435-domain-containing-protein	unknown	unknown	gnl\|CDD\|369291
NZ_CP007799.1\|WP_001295412.1\|5053847_5054627_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387

Protein	Function_ID	Function_description	E-value
NZ_CP007799.1\|WP_038427188.1\|5058582_5059599_-\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP007799.1\|WP_000477811.1\|5054753_5056076_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP007799.1\|WP_000566155.1\|5058287_5058551_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.48449e-05
NZ_CP007799.1\|WP_000816471.1\|5056127_5057351_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP007799.1\|WP_001088378.1\|5051204_5052068_-\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	2.55586e-166
NZ_CP007799.1\|WP_000124615.1\|5059626_5060271_-\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	1.17132e-151
NZ_CP007799.1\|WP_001272323.1\|5043414_5044446_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	0
NZ_CP007799.1\|WP_000563058.1\|5050226_5051009_+\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	1.07007e-180
NZ_CP007799.1\|WP_001143194.1\|5052039_5053590_-\|YjjI-family-glycine-radical-enzyme	gnl\|CDD\|182879	PRK10977, PRK10977, hypothetical protein; Provisional.	0
NZ_CP007799.1\|WP_001132956.1\|5060376_5061345_+\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP007799.1\|WP_000870700.1\|5045391_5046069_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	6.04082e-172
NZ_CP007799.1\|WP_001092461.1\|5044930_5045377_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	1.40837e-111
NZ_CP007799.1\|WP_000175943.1\|5046159_5047749_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP007799.1\|WP_001299799.1\|5049156_5050230_+\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	1.51698e-167
NZ_CP007799.1\|WP_000490275.1\|5048873_5049035_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	4.97087e-08
NZ_CP007799.1\|WP_001295748.1\|5048141_5048747_+\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	4.36119e-102
NZ_CP007799.1\|WP_000224879.1\|5057407_5058127_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.02509e-171
NZ_CP007799.1\|WP_000204018.1\|5044548_5044962_+\|DNA-polymerase-III-subunit-psi	gnl\|CDD\|180735	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated.	5.48557e-70
NZ_CP007799.1\|WP_001350368.1\|5042526_5042763_+\|DUF1435-domain-containing-protein	gnl\|CDD\|369291	pfam07256, DUF1435, Protein of unknown function (DUF1435). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.	1.24791e-26
NZ_CP007799.1\|WP_001295412.1\|5053847_5054627_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0

>NZ_CP007799.1|WP_000563058.1|5050226_5051009_+|metal-dependent-hydrolase
MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPCTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG
>NZ_CP007799.1|WP_001299799.1|5049156_5050230_+|patatin-family-protein
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVANDTLVAEVSDAPQANDPTFNNEDLA
>NZ_CP007799.1|WP_000490275.1|5048873_5049035_+|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>NZ_CP007799.1|WP_001295748.1|5048141_5048747_+|molecular-chaperone-OsmY
MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK
>NZ_CP007799.1|WP_000175943.1|5046159_5047749_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVSRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>NZ_CP007799.1|WP_000870700.1|5045391_5046069_+|pyrimidine-5'-nucleotidase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHELEQLLCKH
>NZ_CP007799.1|WP_001092461.1|5044930_5045377_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM
>NZ_CP007799.1|WP_000204018.1|5044548_5044962_+|DNA-polymerase-III-subunit-psi
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAALWQQICTYEHDFFPRND
>NZ_CP007799.1|WP_001272323.1|5043414_5044446_-|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARFSLVATADDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>NZ_CP007799.1|WP_001350368.1|5042526_5042763_+|DUF1435-domain-containing-protein
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYVLLPSCLALIAGIMLMIMNLNQG
>NZ_CP007799.1|WP_001088378.1|5051204_5052068_-|YjjW-family-glycine-radical-enzyme-activase
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAVFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
>NZ_CP007799.1|WP_001143194.1|5052039_5053590_-|YjjI-family-glycine-radical-enzyme
MPTSDENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDIRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ
>NZ_CP007799.1|WP_001295412.1|5053847_5054627_+|deoxyribose-phosphate-aldolase
MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP007799.1|WP_000477811.1|5054753_5056076_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE
>NZ_CP007799.1|WP_000816471.1|5056127_5057351_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>NZ_CP007799.1|WP_000224879.1|5057407_5058127_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>NZ_CP007799.1|WP_000566155.1|5058287_5058551_-|helix-turn-helix-transcriptional-regulator
MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGISINSLKQIEKTERLSSNIKSKMAEIYGCPPELLICPSWMTAEHK
>NZ_CP007799.1|WP_038427188.1|5058582_5059599_-|lipoate--protein-ligase-LplA
MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEVIREAFFAHYGERVEAEIISPDKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIAGAVR
>NZ_CP007799.1|WP_000124615.1|5059626_5060271_-|YtjB-family-periplasmic-protein
MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE
>NZ_CP007799.1|WP_001132956.1|5060376_5061345_+|phosphoserine-phosphatase
MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKTEVTIRHADLMGVFCILSGSLNQK

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Crispr_ID: NZ_CP007799_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007799_4

5298264-5298355

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007799_4

>merge|NZ_CP007799|4|5298264-5298355|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP007799|4|4|5298264-5298355|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007799.1\|WP_000860428.1\|5286929_5288126_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224136
NZ_CP007799.1\|WP_038427221.1\|5304667_5305489_-\|DUF945-domain-containing-protein	unknown	unknown	gnl\|CDD\|377596
NZ_CP007799.1\|WP_038427219.1\|5295729_5296296_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP007799.1\|WP_001305352.1\|5291235_5291442_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP007799.1\|WP_001304753.1\|5296821_5298150_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP007799.1\|WP_001008953.1\|5301186_5302020_-\|nickel-ABC-transporter-permease-subunit-NikC	unknown	unknown	gnl\|CDD\|236687
NZ_CP007799.1\|WP_000581502.1\|5284508_5284964_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376097
NZ_CP007799.1\|WP_000782654.1\|5291529_5292138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007799.1\|WP_000692323.1\|5303149_5303371_-\|DUF987-domain-containing-protein	unknown	unknown	gnl\|CDD\|368775
NZ_CP007799.1\|WP_038427220.1\|5299631_5300426_-\|nickel-import-ATP-binding-protein-NikE	unknown	unknown	gnl\|CDD\|236689
NZ_CP007799.1\|WP_001028102.1\|5296306_5296801_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP007799.1\|WP_001190062.1\|5299224_5299626_-\|nickel-responsive-transcriptional-regulator-NikR	unknown	unknown	gnl\|CDD\|235093
NZ_CP007799.1\|WP_038427222.1\|5310058_5311339_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP007799.1\|WP_000362014.1\|5286248_5286920_+\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|225031
NZ_CP007799.1\|WP_000884933.1\|5308449_5309100_+\|DNA-oxidative-demethylase-AlkB	unknown	unknown	gnl\|CDD\|237957
NZ_CP007799.1\|WP_001186170.1\|5303439_5303916_-\|RadC-family-protein	unknown	unknown	gnl\|CDD\|224914
NZ_CP007799.1\|WP_001163787.1\|5294670_5294928_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007799.1\|WP_000855074.1\|5303931_5304405_-\|antirestriction-protein	unknown	unknown	gnl\|CDD\|377006
NZ_CP007799.1\|WP_032141584.1\|5285064_5285274_+\|DUF905-family-protein	unknown	unknown	gnl\|CDD\|368702
NZ_CP007799.1\|WP_001136233.1\|5300422_5301187_-\|nickel-import-ATP-binding-protein-NikD	unknown	unknown	gnl\|CDD\|236688

Protein	Function_ID	Function_description	E-value
NZ_CP007799.1\|WP_000860428.1\|5286929_5288126_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224136	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane].	4.54022e-52
NZ_CP007799.1\|WP_038427221.1\|5304667_5305489_-\|DUF945-domain-containing-protein	gnl\|CDD\|377596	pfam06067, DUF932, Domain of unknown function (DUF932). Family of prokaryotic proteins with unknown function. Contains a number of highly conserved polar residues that could suggest an enzymatic activity.	7.86149e-58
NZ_CP007799.1\|WP_038427219.1\|5295729_5296296_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.30829e-118
NZ_CP007799.1\|WP_001305352.1\|5291235_5291442_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	4.24696e-18
NZ_CP007799.1\|WP_001304753.1\|5296821_5298150_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP007799.1\|WP_001008953.1\|5301186_5302020_-\|nickel-ABC-transporter-permease-subunit-NikC	gnl\|CDD\|236687	PRK10417, nikC, nickel transporter permease NikC; Provisional.	1.49526e-171
NZ_CP007799.1\|WP_000581502.1\|5284508_5284964_+\|hypothetical-protein	gnl\|CDD\|376097	pfam18673, IrmA, interleukin receptor mimic protein A. The E. coli interleukin [IL] receptor mimic protein A (IrmA), is a small (13 kDa) Uropathogenic E. coli (UPEC) protein that was originally identified in a large reverse genetic screen as a broadly protective vaccine antigen. It has a fibronectin III (FNIII)-like fold that forms a domain-swapped dimer with structural mimicry to the binding domain of the IL-2 receptor (IL-2R), the IL-4 receptor (IL-4R) and, to a lesser extent, the IL-10 receptor (IL-10R). IrmA binds to all three cytokines, with the greatest affinity observed for IL-4. It is suggested that IrmA may contribute to manipulation of the innate immune response during UPEC infection.	1.98225e-56
NZ_CP007799.1\|WP_000692323.1\|5303149_5303371_-\|DUF987-domain-containing-protein	gnl\|CDD\|368775	pfam06174, DUF987, Protein of unknown function (DUF987). Family of bacterial proteins that are related to the hypothetical protein yeeT.	6.0549e-38
NZ_CP007799.1\|WP_038427220.1\|5299631_5300426_-\|nickel-import-ATP-binding-protein-NikE	gnl\|CDD\|236689	PRK10419, nikE, nickel ABC transporter ATP-binding protein NikE.	1.77381e-168
NZ_CP007799.1\|WP_001028102.1\|5296306_5296801_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	2.66791e-105
NZ_CP007799.1\|WP_001190062.1\|5299224_5299626_-\|nickel-responsive-transcriptional-regulator-NikR	gnl\|CDD\|235093	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR.	5.2873e-67
NZ_CP007799.1\|WP_038427222.1\|5310058_5311339_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	7.15259e-75
NZ_CP007799.1\|WP_000362014.1\|5286248_5286920_+\|PIG-L-family-deacetylase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	1.28412e-41
NZ_CP007799.1\|WP_000884933.1\|5308449_5309100_+\|DNA-oxidative-demethylase-AlkB	gnl\|CDD\|237957	PRK15401, PRK15401, DNA oxidative demethylase AlkB.	8.68734e-159
NZ_CP007799.1\|WP_001186170.1\|5303439_5303916_-\|RadC-family-protein	gnl\|CDD\|224914	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair].	1.77633e-66
NZ_CP007799.1\|WP_000855074.1\|5303931_5304405_-\|antirestriction-protein	gnl\|CDD\|377006	pfam03230, Antirestrict, Antirestriction protein. This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.	1.66859e-44
NZ_CP007799.1\|WP_032141584.1\|5285064_5285274_+\|DUF905-family-protein	gnl\|CDD\|368702	pfam06006, DUF905, Bacterial protein of unknown function (DUF905). This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.	7.05086e-14
NZ_CP007799.1\|WP_001136233.1\|5300422_5301187_-\|nickel-import-ATP-binding-protein-NikD	gnl\|CDD\|236688	PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional.	2.58222e-162

>NZ_CP007799.1|WP_001304753.1|5296821_5298150_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSIFMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP007799.1|WP_001028102.1|5296306_5296801_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQESLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP007799.1|WP_038427219.1|5295729_5296296_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPTRIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRVSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP007799.1|WP_001163787.1|5294670_5294928_-|hypothetical-protein
MQHIDRLNVIKALVLLEDEQIVRFNIAANDNASQIHMLVDGLGVGLTHEPVAAGMISHRTACHRSRQHDRPAHSYFYYLSAYQVA
>NZ_CP007799.1|WP_000782654.1|5291529_5292138_+|hypothetical-protein
MKMKPQYQTRYELLHESYQKWLTGFTRHAVSWGVCHPNIHYFQNLTPGWVSFNGEKPKIAIVPRSLHRLIYGSDKRATPPLDDDLVVNLCTSEHLLVHHPMLEGILLSECERLRQRSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTENLKRKSEKELGEWIIDRQKQNAALTDLMDQYVLLAYRTTVDGNRN
>NZ_CP007799.1|WP_001305352.1|5291235_5291442_+|AlpA-family-transcriptional-regulator
MTTPVSLMDDQMVDMTFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAWLQARIAQSRP
>NZ_CP007799.1|WP_000860428.1|5286929_5288126_+|glycosyltransferase-family-2-protein
MKTWIFICMAVAILLWFLSTLRRKPSQKKGCIDAIIPAYNEGPCLAQSLDNLLRNPYFCRVICVNDGSTDNTEAVMAEVKRKWGDRFVAVTQKNTGKGGALMNGLNYATCDQVFLSDADTYVPPDQDGMGYMLAEIERGADAVGGIPSTALKGAGLLPHIRATVKLPMIVMKRTLQQLLGGAPFIISGACGMFRTDVLRKFGFSDRTKVEDLDLTWTLVANGYRIRQANRCIVYPQECNSPREEWRRWRRWIVGYAVCMRLHKRLLFSRFGIFSIFPMLLVVLYGVGIYLTTWFNEFITTGPHGVVLAMFPLIWVGVVCVIGAFSAWFHRCWLLVPLAPLSVVYVLLAYAIWIIYGLIAFFTGREPQRDKPTRYSALVEASTAYSHPSVTGTEKLSEA
>NZ_CP007799.1|WP_000362014.1|5286248_5286920_+|PIG-L-family-deacetylase
MDKVLDSAILSSANKRKGILAIGAHPDDIELGCGASLARLAQKGIYIATVVMTTGNSGVDGIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISALENIIKNQIPSDVEIIRVYTMHDADRHQDHLAVYQASMVACRAIPQILGYETPSTWLSFMPQVFESVKEEYFSLKLTALKKHKSQSQRDYMRPERLRAVAQFRGQQVNSDLGEGFVIHKMIL
>NZ_CP007799.1|WP_032141584.1|5285064_5285274_+|DUF905-family-protein
MAEGSFSYGQAVAVITAYHNVFIQDDPGMHFRRVIRNAEGQRRWRCRNSEADAGKQLNAWLASGGLLRQ
>NZ_CP007799.1|WP_000581502.1|5284508_5284964_+|hypothetical-protein
MIHLFKTCMITAFILGLTWSAPLRAQDQRYISIRNTDTIWLPGNICAYQFRLDNGGNDEGFGPLTITLQLKDKYGQTLVTRKMETEAFGDSNATRTTDAFLETECVENVATTEIIKATEESNGHRVSLPLSVFDPQDYHPLLITVSGKNVN
>NZ_CP007799.1|WP_001190062.1|5299224_5299626_-|nickel-responsive-transcriptional-regulator-NikR
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED
>NZ_CP007799.1|WP_038427220.1|5299631_5300426_-|nickel-import-ATP-binding-protein-NikE
MTLLNVSDLSHHYAHGGFSGKHQHQAVLNNVSLALKSGETVALLGRSGCGKSTLARLLVGLESPSQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPREILREPMRHLLSLKKAEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQVVGDKLTFSSDAGRVLQNAVLPAFPVRRRTTEKV
>NZ_CP007799.1|WP_001136233.1|5300422_5301187_-|nickel-import-ATP-binding-protein-NikD
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNVPKHAVTRSLVSAHLALYGMELAS
>NZ_CP007799.1|WP_001008953.1|5301186_5302020_-|nickel-ABC-transporter-permease-subunit-NikC
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLILGLIIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFIDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
>NZ_CP007799.1|WP_000692323.1|5303149_5303371_-|DUF987-domain-containing-protein
MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDSFGPYVRLMSVTLN
>NZ_CP007799.1|WP_001186170.1|5303439_5303916_-|RadC-family-protein
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
>NZ_CP007799.1|WP_000855074.1|5303931_5304405_-|antirestriction-protein
MKTLSQNTTSSACAPETGLQQLVATIVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRLYEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPEYDAIMRIID
>NZ_CP007799.1|WP_038427221.1|5304667_5305489_-|DUF945-domain-containing-protein
MRLASRFGYAANQIRRDRPLTHEELMHHVPGIFGEEKHTSRSQNYTYIPTITVLESLQREGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSHDGTSSYQMLPGYFRFVCQNGCVCGQSPGEVRVPHRGNVVDRVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPTRQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKGKRIHTRAIHSIDTDIKLNRALWVMAETMLESLR
>NZ_CP007799.1|WP_000884933.1|5308449_5309100_+|DNA-oxidative-demethylase-AlkB
MLDLFADAEPWQEPLAAGAVILHRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGRLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTTDCRYNLTFRQAGKKE
>NZ_CP007799.1|WP_038427222.1|5310058_5311339_+|Fic-family-protein
MAIKSPPGLIPLSHLSGEELLAHLRFNRVTDEKGRYLPFDELQYRIKKGENVDVAWTLTRLARNAAIQRINYCNEAGEQAGFNITPVIAEACELVDKRATALALKDQTERLRGAGAELSQLRLEEPITSSQLEGANTTTLVARKMLETGRSPRTEDEHMIAGNARLMAEIPHLLAEPLTPALIRQLHAIGMGGINDAKYRPGEFRETDDVVIADYDGNIVHQPPAAALLPERLEKVCQWLNSHEGYIHPLVRACILHFMLAHEHPFRDGNGRTSRALFYWYMLKSGYDVFKYISISSLLHAAPVKYAASYQYTESDGMDLTYFLEYQAGVIKRALQNWQQHIDEITQRSAKLDSVLFSSGVLKRLNPRQVMLANPGKEYTVAEISVSLSVSDNTARTDLRTIVKEGFAQEKRINNQQAVYVAHYPL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007799_4	4.1\|5298290\|40\|NZ_CP007799\|CRISPRCasFinder	5298290-5298329	40	NZ_CP007799.1	1074504-1074543	0	1.0

1. spacer 4.1|5298290|40|NZ_CP007799|CRISPRCasFinder matches to position: 1074504-1074543, mismatch: 0, identity: 1.0

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcatttttgaaattacccccgctgtgctgt	Protospacer
****************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007799_3	3.1\|5051105\|43\|NZ_CP007799\|CRISPRCasFinder	5051105-5051147	43	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	69640-69682	0	1.0
NZ_CP007799_4	4.1\|5298290\|40\|NZ_CP007799\|CRISPRCasFinder	5298290-5298329	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975

1. spacer 3.1|5051105|43|NZ_CP007799|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

aggcagcatccggcagtcggcgcataatgcctgatgcgacgct	CRISPR spacer
aggcagcatccggcagtcggcgcataatgcctgatgcgacgct	Protospacer
*******************************************

2. spacer 4.1|5298290|40|NZ_CP007799|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1316980 : 1372236

Enterobacteria_phage(57.41%)

lysis,transposase,tail,portal,head,capsid,tRNA,terminase,integrase

attL 1313368:1313382|attR 1341860:1341874

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1313368:1313382	attL	NA	NA	NA	NA
WP_000268555.1\|1316980_1318036_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.2e-70	43.9
WP_000380881.1\|1318047_1318383_+\|head	head decoration protein	NA	NA	NA	NA
WP_000224590.1\|1318395_1318809_+	hypothetical protein	NA	NA	NA	NA
WP_000835278.1\|1319014_1319557_+\|terminase	terminase small subunit	O64316	Escherichia_phage	9.3e-35	46.0
WP_000133395.1\|1319813_1320095_+	hypothetical protein	NA	NA	NA	NA
WP_000734671.1\|1320271_1321732_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1321731_1322403_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423742.1\|1322572_1323943_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001295971.1\|1323946_1324588_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001443105.1\|1324623_1325730_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1325783_1326245_-	phosphatase NudJ	NA	NA	NA	NA
WP_000444487.1\|1327080_1328331_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_024199376.1\|1328444_1328858_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	2.9e-73	99.3
WP_085949154.1\|1328902_1330050_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	2.4e-173	96.3
WP_001066176.1\|1330487_1331069_+	super-infection exclusion protein B	K7P6T7	Enterobacteria_phage	5.2e-92	92.2
WP_000088199.1\|1331085_1331358_-	hypothetical protein	A0A0N7C217	Escherichia_phage	2.8e-40	98.9
WP_000438342.1\|1331335_1331518_-	hypothetical protein	A0A0N7C057	Escherichia_phage	1.1e-27	98.3
WP_000968518.1\|1331794_1332547_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_001062368.1\|1332543_1333101_-	hypothetical protein	NA	NA	NA	NA
WP_000067727.1\|1333918_1334134_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_000442609.1\|1334275_1334572_+	hypothetical protein	G9L678	Escherichia_phage	2.2e-46	94.9
WP_000185431.1\|1334604_1335504_+	replication protein	K7P7F0	Enterobacteria_phage	3.5e-172	99.0
WP_000788872.1\|1335500_1336202_+	Replication protein 14	A0A0P0ZD31	Stx2-converting_phage	2.9e-129	99.6
WP_000145927.1\|1336198_1336489_+	protein ren	O48423	Enterobacteria_phage	2.8e-46	97.9
WP_000736913.1\|1336567_1337008_+	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_000153286.1\|1337004_1337532_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	4.7e-100	99.4
WP_001254243.1\|1337528_1337705_+	NinE family protein	A5VW90	Enterobacteria_phage	3.3e-26	96.6
WP_000386643.1\|1337707_1338049_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	1.6e-61	96.5
WP_001099712.1\|1338255_1338618_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971053.1\|1338614_1338755_+	YlcG family protein	K7PHH3	Enterobacteria_phage	3.6e-07	67.4
WP_001204776.1\|1338840_1339224_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	1.5e-55	83.3
WP_000737271.1\|1339412_1340495_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_000839596.1\|1341083_1341299_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|1341298_1341796_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|1342012_1342195_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
1341860:1341874	attR	NA	NA	NA	NA
WP_001298464.1\|1342285_1342579_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_000830178.1\|1343059_1343386_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|1343592_1343775_+	hypothetical protein	NA	NA	NA	NA
WP_000839596.1\|1345436_1345652_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|1345651_1346149_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|1346365_1346548_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001298464.1\|1346638_1346932_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_000830178.1\|1347412_1347739_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|1347945_1348128_+	hypothetical protein	NA	NA	NA	NA
WP_000867568.1\|1348690_1349239_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_000867568.1\|1350854_1351403_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_001335577.1\|1351374_1353303_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.5e-260	66.7
WP_000258997.1\|1353286_1353493_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_000831761.1\|1353489_1355082_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
WP_001253913.1\|1355071_1356577_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.6e-100	53.7
WP_000256840.1\|1356613_1356961_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522648.1\|1357018_1358047_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	5.9e-115	61.6
WP_000201530.1\|1358098_1358473_+	hypothetical protein	NA	NA	NA	NA
WP_001204540.1\|1358465_1358819_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_000975062.1\|1358830_1359409_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	99.0
WP_000683101.1\|1359405_1359801_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	5.5e-69	97.7
WP_001351266.1\|1359808_1360549_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	3.7e-127	95.9
WP_000479129.1\|1360564_1360987_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.7e-66	91.4
WP_000459474.1\|1360968_1361403_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	9.0e-57	90.0
WP_000840269.1\|1361395_1363957_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	94.5
WP_000847405.1\|1363953_1364283_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.4e-54	94.5
WP_001152660.1\|1364282_1364981_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.0e-131	97.8
WP_000140699.1\|1364986_1365730_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.1e-147	97.2
WP_000090917.1\|1365666_1366299_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-97	100.0
WP_000515327.1\|1366359_1369842_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.5
WP_000290543.1\|1369900_1371961_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	2.0e-125	53.4
WP_000654167.1\|1371957_1372236_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	56.5

DBSCAN-SWA_2

1995679 : 2089511

103

Enterobacteria_phage(25.81%)

protease,tail,holin,portal,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984517.1\|1995679_1996561_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001055794.1\|1996752_1998801_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
WP_000431376.1\|1998820_1999519_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001304298.1\|2000247_2001531_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001327806.1\|2001499_2004133_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_001704100.1\|2004212_2005652_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001295499.1\|2005769_2006006_+	DUF1480 family protein	NA	NA	NA	NA
WP_001317886.1\|2006110_2006302_+	YebW family protein	NA	NA	NA	NA
WP_000812743.1\|2006302_2006959_-	protein-serine/threonine phosphatase	A0A2D1GLI5	Escherichia_phage	1.0e-56	50.5
WP_000984819.1\|2007353_2007695_-	YebY family protein	NA	NA	NA	NA
WP_000879311.1\|2007707_2008580_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168747.1\|2008583_2008958_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|2009096_2009327_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_000011644.1\|2009429_2010086_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000944256.1\|2010109_2010772_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
WP_000024725.1\|2013037_2013697_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001295500.1\|2014023_2014380_-	protein YebF	NA	NA	NA	NA
WP_000257738.1\|2014446_2014737_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_000800512.1\|2016105_2016747_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069461.1\|2016783_2018595_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301727.1\|2018829_2020305_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	4.4e-79	37.5
WP_001056695.1\|2020642_2021512_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
WP_000091149.1\|2021639_2023082_+	pyruvate kinase	NA	NA	NA	NA
WP_001304294.1\|2023213_2024185_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184045.1\|2024303_2025626_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_011076428.1\|2025641_2026574_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202996.1\|2026652_2027408_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
WP_000571478.1\|2027404_2028190_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568522.1\|2028336_2029347_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580323.1\|2029355_2029967_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_072123646.1\|2030105_2030171_-	hypothetical protein	NA	NA	NA	NA
WP_001024947.1\|2030242_2030845_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|2030846_2031368_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907234.1\|2031402_2032143_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_077393227.1\|2032171_2032624_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258675.1\|2032616_2034389_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891621.1\|2034698_2035265_+	hydrolase	NA	NA	NA	NA
WP_024199385.1\|2035866_2036256_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	3.9e-51	72.1
WP_000497431.1\|2036334_2036577_+	DinI family protein	Q6UAW0	Klebsiella_phage	2.4e-30	80.5
WP_157221658.1\|2036702_2036993_+	hypothetical protein	NA	NA	NA	NA
WP_001704105.1\|2036994_2037438_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	9.2e-57	72.1
WP_001704106.1\|2037409_2038003_-\|tail	tail assembly chaperone	K7P870	Enterobacteria_phage	1.7e-58	63.0
WP_021567253.1\|2039440_2039674_+	hypothetical protein	A0A0D4DAJ4	Escherichia_phage	1.3e-38	96.1
WP_001704108.1\|2039705_2043632_-	DUF1983 domain-containing protein	K7PMC2	Enterobacterial_phage	0.0e+00	96.4
WP_001704109.1\|2043674_2044292_-\|tail	tail assembly protein	M9NZA3	Enterobacteria_phage	1.5e-105	99.5
WP_001704110.1\|2044284_2045004_-	C40 family peptidase	K7PJY5	Enterobacterial_phage	1.8e-142	99.2
WP_001704111.1\|2045006_2045744_-\|tail	phage minor tail protein L	M9NYX1	Enterobacteria_phage	1.2e-146	99.6
WP_001704112.1\|2045800_2046139_-\|tail	phage tail protein	E4WL34	Enterobacteria_phage	2.3e-60	100.0
WP_001704113.1\|2046135_2049273_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	94.9
WP_071605477.1\|2049256_2049571_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	8.3e-52	93.3
WP_001704115.1\|2049579_2050011_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	1.1e-65	90.9
WP_001704116.1\|2050021_2050765_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.7e-132	99.2
WP_001704117.1\|2050774_2051176_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	4.1e-72	100.0
WP_001704118.1\|2051172_2051751_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.7e-95	98.4
WP_032315004.1\|2051760_2052036_-	DNA breaking-rejoining protein	K7PH55	Enterobacterial_phage	5.9e-38	96.2
WP_001704120.1\|2052028_2052355_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	3.9e-52	98.1
WP_173400927.1\|2052437_2054471_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	99.0
WP_001704122.1\|2054397_2055897_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	3.8e-288	99.8
WP_001704123.1\|2055893_2056109_-	hypothetical protein	K7PMB5	Enterobacterial_phage	1.4e-31	98.6
WP_001704124.1\|2056105_2058208_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	98.7
WP_001704125.1\|2058207_2058696_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	3.1e-82	100.0
WP_000066210.1\|2058879_2059608_-	hypothetical protein	M9NZE9	Enterobacteria_phage	4.1e-118	98.3
WP_001446080.1\|2059782_2060013_-	hypothetical protein	Q38201	Enterobacteria_phage	1.0e-38	98.7
WP_001446081.1\|2060011_2060608_+	hypothetical protein	M9NZJ1	Enterobacteria_phage	9.7e-110	100.0
WP_001704127.1\|2060676_2060874_-	hypothetical protein	K7PHC3	Enterobacterial_phage	2.2e-26	90.8
WP_077249777.1\|2061087_2061654_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	4.5e-08	32.5
WP_032315006.1\|2061587_2062130_-	lysozyme	K7PM52	Enterobacteria_phage	1.3e-100	97.2
WP_024199389.1\|2062107_2062386_-\|holin	holin	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
WP_001704131.1\|2062531_2063584_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	7.8e-171	80.7
WP_024199390.1\|2063734_2063926_-	hypothetical protein	Q8SBE3	Shigella_phage	3.7e-23	84.1
WP_001704133.1\|2064094_2064994_-	DUF114 domain-containing protein	NA	NA	NA	NA
WP_001704134.1\|2065006_2065213_-	hypothetical protein	NA	NA	NA	NA
WP_001704136.1\|2065645_2066335_-	hypothetical protein	NA	NA	NA	NA
WP_024199391.1\|2066356_2067352_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.0e-143	69.9
WP_001704138.1\|2067348_2068032_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	3.0e-62	60.0
WP_001704139.1\|2068045_2068432_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	88.4
WP_032315008.1\|2068428_2069745_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.6e-117	52.3
WP_001704141.1\|2069744_2070626_-	conserved phage C-terminal domain-containing protein	U5P0A0	Shigella_phage	6.0e-31	84.1
WP_071840634.1\|2070615_2070795_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.3e-13	65.4
WP_001704142.1\|2070970_2071534_-	hypothetical protein	S5FXP0	Shigella_phage	1.1e-06	27.1
WP_024195799.1\|2071565_2071823_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	3.5e-08	41.1
WP_032140310.1\|2071892_2072612_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.8e-25	34.7
WP_016240143.1\|2072856_2073222_+	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	9.7e-12	51.6
WP_001704144.1\|2073564_2074482_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.7e-105	64.0
WP_000120456.1\|2074590_2075130_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.7e-66	69.8
WP_001253785.1\|2075117_2075294_+	hypothetical protein	NA	NA	NA	NA
WP_000215602.1\|2075290_2075545_+	hypothetical protein	NA	NA	NA	NA
WP_000126106.1\|2075541_2075889_+	hypothetical protein	A0A2H4A316	Salmonella_phage	3.5e-11	65.5
WP_000359354.1\|2075890_2076199_+	hypothetical protein	NA	NA	NA	NA
WP_000210514.1\|2076212_2076680_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	9.5e-44	84.7
WP_000492059.1\|2076682_2076937_+	DUF4222 domain-containing protein	H6WZF9	Escherichia_phage	4.1e-17	54.4
WP_001704145.1\|2076958_2077528_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.1e-91	82.4
WP_003839185.1\|2077568_2077805_+	excisionase family protein	Q8W657	Enterobacteria_phage	4.6e-39	89.7
WP_001704146.1\|2077863_2079177_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	4.3e-235	89.9
WP_050557523.1\|2079155_2079929_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_000252980.1\|2079981_2080377_+	MAPEG family protein	NA	NA	NA	NA
WP_000019588.1\|2080417_2081161_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564738.1\|2081157_2082129_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176878.1\|2082293_2084723_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214284.1\|2084747_2085848_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185734.1\|2086235_2086982_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001304291.1\|2086995_2087562_-	VOC family protein	NA	NA	NA	NA
WP_001025326.1\|2087777_2089511_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7

DBSCAN-SWA_3

2471724 : 2481169

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001305166.1\|2471724_2472861_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.8e-163	97.7
WP_001327380.1\|2472857_2474861_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.1
WP_001296231.1\|2474985_2475447_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|2475487_2475958_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2476004_2476724_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2476720_2478406_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240404.1\|2478627_2479359_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
WP_001216963.1\|2479418_2479526_+	protein YohO	NA	NA	NA	NA
WP_000783150.1\|2479506_2480238_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569381.1\|2480242_2481169_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_4

3072570 : 3079710

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|3072570_3075132_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001141289.1\|3075237_3075894_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	2.8e-49	45.2
WP_001298167.1\|3075944_3076712_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
WP_000847998.1\|3076907_3077816_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.1e-118	76.9
WP_000590418.1\|3077812_3079075_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279001.1\|3079071_3079710_+	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

DBSCAN-SWA_5

3312618 : 3367727

Acinetobacter_phage(28.57%)

lysis,protease,transposase,tRNA,integrase

attL 3332556:3332571|attR 3346697:3346712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001327406.1\|3312618_3313377_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105562.1\|3313580_3314501_-	agmatinase	NA	NA	NA	NA
WP_000758911.1\|3314636_3315368_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3315513_3317490_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3317498_3317630_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001331575.1\|3317765_3317981_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3318284_3319439_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3319874_3321269_+	galactose/proton symporter	NA	NA	NA	NA
WP_000858396.1\|3321345_3321843_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_001327408.1\|3321937_3322645_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222509.1\|3322724_3323456_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593261.1\|3323468_3324419_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|3324527_3325091_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017106.1\|3325090_3325507_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001327409.1\|3325680_3326661_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3326678_3327383_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3327400_3327967_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3327963_3328254_+	YggU family protein	NA	NA	NA	NA
WP_001174738.1\|3328261_3328855_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239981.1\|3328847_3329984_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000745192.1\|3330052_3331060_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394106.1\|3331176_3332223_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3332398_3333118_-	DUF2884 domain-containing protein	NA	NA	NA	NA
3332556:3332571	attL	NA	NA	NA	NA
WP_001107565.1\|3333301_3333628_-	YggL family protein	NA	NA	NA	NA
WP_000786915.1\|3333627_3334347_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001327411.1\|3334507_3335560_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091699.1\|3335587_3335863_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|3335927_3337007_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001327414.1\|3337208_3338465_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839794.1\|3338513_3340649_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234491.1\|3341047_3341755_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218869.1\|3342133_3343399_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_000147017.1\|3343654_3344698_+	hypothetical protein	NA	NA	NA	NA
WP_089643931.1\|3345682_3346839_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-68	45.1
3346697:3346712	attR	NA	NA	NA	NA
WP_001171523.1\|3346941_3347322_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612591.1\|3347318_3347666_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_071925535.1\|3349465_3350017_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001296368.1\|3351215_3351437_+	pap operon regulatory protein PapI	NA	NA	NA	NA
WP_001513409.1\|3353304_3353418_-\|lysis	lysis protein	NA	NA	NA	NA
WP_001110186.1\|3355251_3355512_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109147.1\|3355553_3356114_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|3356153_3356582_+	DUF417 family protein	NA	NA	NA	NA
WP_000266542.1\|3357134_3357350_-	hypothetical protein	NA	NA	NA	NA
WP_001529396.1\|3357353_3357722_-	hypothetical protein	NA	NA	NA	NA
WP_001296383.1\|3358012_3358255_-	hypothetical protein	NA	NA	NA	NA
WP_024199380.1\|3359122_3361213_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_000291745.1\|3363211_3363793_-	hypothetical protein	NA	NA	NA	NA
WP_001034083.1\|3363839_3367727_-\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0

DBSCAN-SWA_6

3404902 : 3415468

Pseudomonas_phage(36.36%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038427155.1\|3404902_3405724_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.5e-44	37.4
WP_001537423.1\|3405986_3406460_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	9.7e-12	33.1
WP_001186170.1\|3406475_3406952_+	RadC family protein	NA	NA	NA	NA
WP_000692312.1\|3407014_3407236_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
WP_000094915.1\|3407254_3407899_+	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	7.2e-26	32.9
WP_001285481.1\|3407948_3408323_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000854739.1\|3408369_3408750_+	toxin	NA	NA	NA	NA
WP_001355625.1\|3409189_3409399_+	hypothetical protein	NA	NA	NA	NA
WP_001234620.1\|3409811_3410630_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-44	38.2
WP_000849565.1\|3410684_3411170_+	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_001186726.1\|3411185_3411662_+	RadC family protein	NA	NA	NA	NA
WP_000692329.1\|3411724_3411946_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_000902034.1\|3412378_3412612_+	DUF905 family protein	NA	NA	NA	NA
WP_001234620.1\|3412712_3413531_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-44	38.2
WP_000849565.1\|3413585_3414071_+	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_001186726.1\|3414086_3414563_+	RadC family protein	NA	NA	NA	NA
WP_000692329.1\|3414625_3414847_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_038427156.1\|3414865_3415468_+	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	7.0e-23	32.6

DBSCAN-SWA_7

5252658 : 5353742

Enterobacteria_phage(22.22%)

integrase,tRNA,transposase

attL 5244888:5244922|attR 5378228:5378262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5244888:5244922	attL	NA	NA	NA	NA
WP_001219060.1\|5252658_5253870_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.5e-160	68.9
WP_001172293.1\|5255952_5256942_+	aldo/keto reductase	NA	NA	NA	NA
WP_000573634.1\|5257814_5258768_+	HTH-type transcriptional regulator MetR	NA	NA	NA	NA
WP_001196237.1\|5258655_5259555_-	biotin transporter	NA	NA	NA	NA
WP_038427212.1\|5259630_5260416_-	sugar/pyridoxal phosphate phosphatase YigL	NA	NA	NA	NA
WP_038427213.1\|5261405_5262521_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.8e-86	45.2
WP_000007629.1\|5262543_5262876_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.8e-10	33.0
WP_000955028.1\|5265143_5266088_+	transporter YfdV	NA	NA	NA	NA
WP_000829498.1\|5268095_5268830_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_000070131.1\|5270225_5271359_-	ABC transporter permease	NA	NA	NA	NA
WP_000083138.1\|5271699_5273610_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_001261095.1\|5273742_5274075_-	NIPSNAP family protein	NA	NA	NA	NA
WP_000085626.1\|5275080_5275410_-	DUF1643 domain-containing protein	A0A1V0EBT6	Caulobacter_phage	2.0e-11	35.4
WP_000190110.1\|5275739_5276300_+	recombinase family protein	A0A219Y912	Aeromonas_phage	4.2e-22	39.9
WP_000331917.1\|5276313_5277159_+	hypothetical protein	NA	NA	NA	NA
WP_000145203.1\|5277219_5277714_-	membrane protein	NA	NA	NA	NA
WP_000749342.1\|5277954_5278419_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000594912.1\|5279456_5280281_+	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5
WP_000747102.1\|5280679_5281030_+\|transposase	transposase	Q716C1	Shigella_phage	8.9e-39	97.7
WP_001254876.1\|5280949_5282101_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-42	36.0
WP_000581502.1\|5284508_5284964_+	hypothetical protein	NA	NA	NA	NA
WP_032141584.1\|5285064_5285274_+	DUF905 family protein	NA	NA	NA	NA
WP_000362014.1\|5286248_5286920_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_000860428.1\|5286929_5288126_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_001305352.1\|5291235_5291442_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000782654.1\|5291529_5292138_+	hypothetical protein	NA	NA	NA	NA
WP_001163787.1\|5294670_5294928_-	hypothetical protein	NA	NA	NA	NA
WP_038427219.1\|5295729_5296296_+	malonic semialdehyde reductase	NA	NA	NA	NA
WP_001028102.1\|5296306_5296801_+	pyrimidine utilization flavin reductase protein F	Q9KX93	Enterobacteria_phage	5.5e-50	96.9
WP_001304753.1\|5296821_5298150_+	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	6.3e-234	98.9
WP_001273658.1\|5298232_5298406_-	general stress protein	Q9KX95	Enterobacteria_phage	4.9e-06	96.3
WP_001190062.1\|5299224_5299626_-	nickel-responsive transcriptional regulator NikR	NA	NA	NA	NA
WP_038427220.1\|5299631_5300426_-	nickel import ATP-binding protein NikE	G3M9Y6	Bacillus_virus	1.3e-16	28.4
WP_001136233.1\|5300422_5301187_-	nickel import ATP-binding protein NikD	NA	NA	NA	NA
WP_001008953.1\|5301186_5302020_-	nickel ABC transporter permease subunit NikC	NA	NA	NA	NA
WP_000692323.1\|5303149_5303371_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_001186170.1\|5303439_5303916_-	RadC family protein	NA	NA	NA	NA
WP_000855074.1\|5303931_5304405_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	1.3e-11	33.1
WP_038427221.1\|5304667_5305489_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.0e-45	37.8
WP_000884933.1\|5308449_5309100_+	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	1.4e-05	31.7
WP_038427222.1\|5310058_5311339_+	Fic family protein	A0A1V0E025	Clostridioides_phage	3.6e-21	30.9
WP_000183973.1\|5311446_5312985_+	aldehyde dehydrogenase AldB	NA	NA	NA	NA
WP_000893156.1\|5313031_5313727_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_001296278.1\|5322616_5322961_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000826499.1\|5322962_5323355_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000695662.1\|5323405_5324821_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_001774069.1\|5327142_5327694_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_103103190.1\|5329622_5330850_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.2e-170	95.3
WP_000634338.1\|5336408_5337125_-	hypothetical protein	NA	NA	NA	NA
WP_000634338.1\|5339695_5340412_-	hypothetical protein	NA	NA	NA	NA
WP_001140167.1\|5349515_5350088_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000115885.1\|5351014_5351533_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000343765.1\|5352521_5353742_+\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
5378228:5378262	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007799

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection