CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_021977	Acetobacter pasteurianus 386B plasmid Apa386Bp4, complete sequence	0 crisprs	NA	0
NC_021978	Acetobacter pasteurianus 386B plasmid Apa386Bp6, complete sequence	0 crisprs	NA	0
NZ_HF677572	Acetobacter pasteurianus 386B plasmid Apa386Bp2, complete sequence	0 crisprs	NA	0
NC_021979	Acetobacter pasteurianus 386B plasmid Apa386Bp7, complete sequence	0 crisprs	NA	0
NC_021991	Acetobacter pasteurianus 386B, complete genome	0 crisprs	c2c9_V-U4,cas14j,cas3,csa3,DEDDh	2
NC_021992	Acetobacter pasteurianus 386B plasmid Apa386Bp3, complete sequence	0 crisprs	NA	0
NC_021993	Acetobacter pasteurianus 386B plasmid Apa386Bp5, complete sequence	0 crisprs	NA	0
NC_021976	Acetobacter pasteurianus 386B plasmid Apa386Bp1, complete sequence	0 crisprs	RT	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53899 : 115316

Salmonella_phage(14.29%)

tRNA,integrase,transposase

attL 83119:83138|attR 90220:90239

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148304534.1\|53899_54656_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.0e-10	37.2
WP_148304535.1\|54732_55943_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	5.2e-94	62.9
WP_048481281.1\|55997_56327_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_020936700.1\|56620_58702_+	NgoFVII family restriction endonuclease	NA	NA	NA	NA
WP_040133401.1\|58881_59139_+	plasmid stabilization protein	NA	NA	NA	NA
WP_020936702.1\|59135_59558_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_020936705.1\|60132_60429_+	BrnT family toxin	NA	NA	NA	NA
WP_020936706.1\|60397_60739_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_080713420.1\|61171_61570_-	MucR family transcriptional regulator	NA	NA	NA	NA
WP_035362908.1\|62182_62626_+	ester cyclase	NA	NA	NA	NA
WP_040133438.1\|62668_63532_+	class A beta-lactamase	A0A077SL40	Escherichia_phage	3.0e-43	43.9
WP_020936714.1\|64409_64979_+	serine hydrolase family protein	NA	NA	NA	NA
WP_020936716.1\|65933_67274_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_148304536.1\|67285_69652_-	TonB-dependent receptor	NA	NA	NA	NA
WP_020936718.1\|69686_70076_-	hypothetical protein	NA	NA	NA	NA
WP_035362690.1\|70302_71130_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_003626679.1\|71154_71556_-	VOC family protein	NA	NA	NA	NA
WP_035362698.1\|71615_72725_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A2K9V7Y5	Bandra_megavirus	1.1e-10	24.7
WP_003626675.1\|72766_73042_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_003626674.1\|73434_74295_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.2e-53	42.5
WP_003626672.1\|74319_75303_-	aldo/keto reductase	NA	NA	NA	NA
WP_003626670.1\|75453_76347_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003626668.1\|76527_76935_-	VOC family protein	NA	NA	NA	NA
WP_020936719.1\|77270_77723_-	ester cyclase	NA	NA	NA	NA
WP_035362696.1\|77888_78962_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A167R6J9	Powai_lake_megavirus	7.8e-17	51.9
WP_003626661.1\|78958_79681_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_035362687.1\|79769_80492_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_035362694.1\|80481_81123_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_020936722.1\|81119_81689_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_048481283.1\|81922_82897_-	recombinase family protein	A0A1S6L009	Salmonella_phage	3.4e-35	55.9
83119:83138	attL	NA	NA	NA	NA
WP_020936724.1\|83499_86175_+	AAA family ATPase	A0A1B1IUG5	uncultured_Mediterranean_phage	2.8e-47	26.9
WP_003627393.1\|86571_88224_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_020936725.1\|88226_89150_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_020936726.1\|89142_90144_+	TniQ family protein	NA	NA	NA	NA
WP_035362983.1\|90457_90742_+	hypothetical protein	NA	NA	NA	NA
90220:90239	attR	NA	NA	NA	NA
WP_003627483.1\|90729_91110_+	hypothetical protein	NA	NA	NA	NA
WP_003627485.1\|91135_91642_+	hypothetical protein	NA	NA	NA	NA
WP_040133421.1\|91772_92015_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.1e-14	50.0
WP_081939029.1\|91999_92155_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_020936729.1\|92157_93288_+	hypothetical protein	NA	NA	NA	NA
WP_020936730.1\|93299_93818_+	hypothetical protein	NA	NA	NA	NA
WP_020936732.1\|94228_95275_-	Fic family protein	S4TP71	Salmonella_phage	1.8e-05	28.0
WP_003626805.1\|95271_95565_-	hypothetical protein	NA	NA	NA	NA
WP_003626803.1\|95718_97038_-	replication protein C	NA	NA	NA	NA
WP_035362737.1\|98322_99552_-	GTP-binding protein	NA	NA	NA	NA
WP_035362736.1\|99565_100075_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_020936737.1\|100071_100683_-	GTP cyclohydrolase I FolE	A0A088F7Y4	Vibrio_phage	1.4e-42	45.4
WP_020936738.1\|100847_101474_+	DUF1826 domain-containing protein	NA	NA	NA	NA
WP_020936739.1\|101470_101977_+	transcriptional repressor	NA	NA	NA	NA
WP_035362735.1\|101973_103896_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.9e-116	37.3
WP_003626794.1\|103892_105626_+	ABC transporter ATP-binding protein/permease	G3M9Y6	Bacillus_virus	2.5e-09	26.5
WP_158026965.1\|105690_105837_+	hypothetical protein	NA	NA	NA	NA
WP_040133417.1\|106414_108781_+	TonB-dependent receptor	NA	NA	NA	NA
WP_020936742.1\|108792_110133_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_003627592.1\|111546_112914_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	3.3e-113	49.2
WP_003626862.1\|113928_115008_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_099541956.1\|115034_115316_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_021991

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

362647 : 385729

Vibrio_phage(25.0%)

capsid,tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003623873.1\|362647_363643_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_020943967.1\|363656_364388_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_020943969.1\|365217_366003_-	hypothetical protein	NA	NA	NA	NA
WP_020943970.1\|365999_366392_-	hypothetical protein	NA	NA	NA	NA
WP_020943971.1\|366391_366982_-	hypothetical protein	NA	NA	NA	NA
WP_020943972.1\|367035_367401_-	hypothetical protein	NA	NA	NA	NA
WP_020943973.1\|367393_367564_-	hypothetical protein	NA	NA	NA	NA
WP_020943974.1\|367627_368101_-	hypothetical protein	A0A2I7R3H9	Vibrio_phage	9.0e-10	34.6
WP_020943975.1\|368097_368604_-	hypothetical protein	NA	NA	NA	NA
WP_148304511.1\|368640_370890_-	hypothetical protein	NA	NA	NA	NA
WP_158310569.1\|371277_371451_-	hypothetical protein	NA	NA	NA	NA
WP_038505943.1\|372005_372434_-	hypothetical protein	NA	NA	NA	NA
WP_020943980.1\|373516_374065_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_020943981.1\|374068_375184_-\|plate	baseplate J/gp47 family protein	B5TAA9	Burkholderia_phage	3.9e-19	28.3
WP_020943982.1\|375187_375688_-	phage GP46 family protein	A0A2P9JZK5	Alteromonadaceae_phage	1.1e-10	33.3
WP_020943983.1\|375689_376220_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_020943984.1\|376219_377368_-	Mu P family protein	M4M9L5	Vibrio_phage	6.8e-27	29.2
WP_020943985.1\|377367_378666_-	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	4.0e-15	26.1
WP_020943986.1\|378670_380608_-	hypothetical protein	A0A2H4FT35	Methylophilaceae_phage	3.3e-05	22.8
WP_038505947.1\|380740_381385_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003630341.1\|381387_381771_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_020943989.1\|381782_383258_-\|tail	bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	3.0e-59	36.9
WP_003630344.1\|383258_383462_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_048481206.1\|383471_383882_-	hypothetical protein	NA	NA	NA	NA
WP_048481207.1\|383931_384333_-	hypothetical protein	NA	NA	NA	NA
WP_020943991.1\|384334_384616_-	hypothetical protein	NA	NA	NA	NA
WP_020943992.1\|384619_385729_-\|capsid	major capsid protein	V5Q8X6	Xylella_phage	5.0e-51	35.4

DBSCAN-SWA_2

2093558 : 2113787

Aeromonas_phage(33.33%)

terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020944577.1\|2093558_2095013_+\|terminase	phage terminase large subunit	A0A1X9SGU8	Bradyrhizobium_phage	2.1e-105	45.6
WP_173402442.1\|2095009_2096161_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_003625356.1\|2096309_2097689_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	7.8e-86	43.7
WP_003625358.1\|2097685_2098687_+	DUF2213 domain-containing protein	A0A2R3UAL3	Myoviridae_environmental_samples	2.2e-29	36.5
WP_003625360.1\|2098724_2099225_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	4.9e-30	46.9
WP_003625362.1\|2099224_2100262_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.4e-79	46.7
WP_035362402.1\|2100307_2100625_+	hypothetical protein	H9C0V9	Aeromonas_phage	1.1e-11	41.4
WP_003625365.1\|2100661_2101168_+	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	3.2e-13	44.8
WP_003625368.1\|2101158_2101539_+	hypothetical protein	NA	NA	NA	NA
WP_003625370.1\|2101535_2102072_+	hypothetical protein	NA	NA	NA	NA
WP_003625373.1\|2102090_2103245_+	DUF3383 family protein	H9C0W5	Aeromonas_phage	6.2e-28	33.6
WP_003625374.1\|2103247_2103685_+	hypothetical protein	NA	NA	NA	NA
WP_003625377.1\|2103723_2104179_+	hypothetical protein	NA	NA	NA	NA
WP_003625379.1\|2104202_2104364_+	hypothetical protein	NA	NA	NA	NA
WP_035362404.1\|2104543_2105362_+	hypothetical protein	NA	NA	NA	NA
WP_003625383.1\|2105397_2106111_+	hypothetical protein	NA	NA	NA	NA
WP_003625384.1\|2106107_2106428_+	hypothetical protein	A0A191ZDK0	Acinetobacter_phage	2.4e-06	35.1
WP_003625386.1\|2106424_2107351_+	hypothetical protein	NA	NA	NA	NA
WP_003625389.1\|2107347_2108037_+	hypothetical protein	A0A2R3UAK1	Myoviridae_environmental_samples	8.2e-36	43.1
WP_003625391.1\|2108048_2108402_+	hypothetical protein	A0A068CCM1	Acinetobacter_phage	8.5e-13	42.1
WP_173402460.1\|2108430_2109624_+\|plate	baseplate J/gp47 family protein	A0A2R3UAL9	Myoviridae_environmental_samples	1.5e-61	39.5
WP_003625393.1\|2109623_2110202_+	DUF2612 domain-containing protein	Q6UIZ7	Burkholderia_virus	3.3e-30	39.2
WP_003625395.1\|2110209_2111307_+	hypothetical protein	A0A077KC23	Edwardsiella_phage	5.9e-12	34.5
WP_003625397.1\|2111313_2111883_+	hypothetical protein	NA	NA	NA	NA
WP_003625399.1\|2112005_2112452_+	hypothetical protein	NA	NA	NA	NA
WP_003625401.1\|2112524_2113787_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.5e-30	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021976

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_021991

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection