CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007139	Fimbriimonas ginsengisoli Gsoil 348 chromosome, complete genome	3 crisprs	csa3,PD-DExK,WYL,DinG,cas3,Cas9_archaeal	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP007139

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007139_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007139_1

919793-919933

Orphan

Consensus_repeat	Method
CCTTCCCAGGGGTCTTCGACACCCTGGCTAAGCTCTGCGACCCTTCGGGTCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007139_1

>merge|NZ_CP007139|1|919793-919933|CRISPRCasFinder
CCTTCCCAGGGGTCTTCGACACCCTGGCTAAGCTCTGCGACCCTTCGGGTCGGGGGAGGGTGCTGGTGTCCTCAGGCGGAGGAACGCCTTCCCAGGGGTCTTCGACCACCCTGGCTAAGCTCTGCGACCCTTCGGGTCGGG

>NZ_CP007139|1|1|919793-919933|CRISPRCasFinder
CCTTCCCAGGGGTCTTCGACACCCTGGCTAAGCTCTGCGACCCTTCGGGTCGGG	GGAGGGTGCTGGTGTCCTCAGGCGGAGGAACGC
CTTCCCAGGGGTCTTCGACCACCCTGGCTAAGCTCTGCGACCCTTCGGGTCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007139.1\|WP_038472518.1\|908876_909197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227119.1\|926886_927987_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP007139.1\|WP_025227132.1\|909289_911326_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP007139.1\|WP_038472525.1\|914357_915410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227122.1\|922621_924847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227127.1\|918649_919270_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NZ_CP007139.1\|WP_025227124.1\|921156_921774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227123.1\|921828_922602_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227120.1\|925955_926564_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_CP007139.1\|WP_025227118.1\|928358_930434_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP007139.1\|WP_144240989.1\|930557_931151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025227115.1\|934261_936595_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NZ_CP007139.1\|WP_025227128.1\|917405_918494_-\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|365907
NZ_CP007139.1\|WP_144240990.1\|931288_934171_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|213736
NZ_CP007139.1\|WP_025227134.1\|906862_908821_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP007139.1\|WP_025227121.1\|924924_925803_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NZ_CP007139.1\|WP_025227129.1\|915406_917224_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NZ_CP007139.1\|WP_052547532.1\|912296_914243_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP007139.1\|WP_025227135.1\|905903_906866_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP007139.1\|WP_025227131.1\|911647_912220_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559

Protein	Function_ID	Function_description	E-value
NZ_CP007139.1\|WP_025227119.1\|926886_927987_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	5.96679e-148
NZ_CP007139.1\|WP_025227132.1\|909289_911326_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.40119e-113
NZ_CP007139.1\|WP_052547532.1\|912296_914243_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP007139.1\|WP_025227127.1\|918649_919270_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	2.29441e-87
NZ_CP007139.1\|WP_025227118.1\|928358_930434_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP007139.1\|WP_025227120.1\|925955_926564_+\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	1.84098e-102
NZ_CP007139.1\|WP_025227115.1\|934261_936595_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	5.91074e-101
NZ_CP007139.1\|WP_025227128.1\|917405_918494_-\|cellulase-family-glycosylhydrolase	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.66978e-24
NZ_CP007139.1\|WP_144240990.1\|931288_934171_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	5.62568e-10
NZ_CP007139.1\|WP_025227134.1\|906862_908821_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.12911e-06
NZ_CP007139.1\|WP_025227121.1\|924924_925803_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.47326e-111
NZ_CP007139.1\|WP_025227129.1\|915406_917224_-\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	1.47651e-52
NZ_CP007139.1\|WP_025227135.1\|905903_906866_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	7.14125e-47
NZ_CP007139.1\|WP_025227131.1\|911647_912220_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.13315e-28

>NZ_CP007139.1|WP_025227127.1|918649_919270_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MNGLQKVSAPRTPKPAPAGSKTLVVAGGCFWCVESQMDQLRGVYFAESGYAGGQHPGVDYEEVCSGQTGHAEAVRVVFDPKVISEADLLRIFFTIHNPTTLNQQGPDHGTQYRSAIFYSSPEEKELAIKIRDEIAKAKLWKNPIVTSIEPLKNYTPAEEYHQNYFEKYEKATDAQRMTMNAGYCAAIVEPHVIEFRHKFADRLKKQ
>NZ_CP007139.1|WP_025227128.1|917405_918494_-|cellulase-family-glycosylhydrolase
MTTALLASLLLHSTGVGVPAGRLAHLATGVNVCRWFRFPEKSDDAHWAGYIGDDEMVMMRRMGLRHVRLCIAPQLVMTPVTGAPKEHEWGYIEKAIQRFLDHGLAVVVDMHNENRRDEADPAWESQFQNFWGIAAKRLSHFDPNRVFLEIVNEPVFDHKESEWKVLLPRLAKTIRASAPRHTIIASGANWGGIYGLQQLEPLADRNVVYSFHTYDPFPFTHQAATWAGEAVKPLRGVPYPSSPEAVAPLLPGLPEESRKMLENYGRERWNREKMTENFRQAIDWGRKNKAPLYCGEFGVFPVAAKPEHRANWFRDFGSVLKQNRVGWASWGWDEGFGFDRHRVGGKIVVDPVVAKALGMNLP
>NZ_CP007139.1|WP_025227129.1|915406_917224_-|zinc-dependent-metalloprotease
MLWNVQLEGPETSNQYTIRLAQSLQVRWVRKEGSIDLVGLTKDRASGRFQEHLVHSFDVRPGESIDVGPILRGDVPELSPGWALHANGVDSQRTRVERFDGDSEGFQARVHAVFPLKEARPVVATVYHSLVWLPKDQMPGLAPDPRIGYLDLDGPNGKHIRKFRLEGQPRADGRFIPAHPIVFEIAPEVPKIWRPYLRGAVEEWNQAYRALGWENVLGCRDATADDTWNPADIRRSVIRWSDGSGENATGYAVSDPRTGETLSGKVVIGSRVIGLLARTYVVQAAPGDPAARRWPLPVDLQGRLLQYTVAHEIGHVLGLDHNSLASSVYTVAQLRNRAFVHEHGAVASIMSYGRFNYVGQPQDRAVRIPEVGDYDRFALRFAYSPTPIDRDALLAEQKTHRDFRFAECGGGPSRDPDVQWEKQGCETMLATELGLRNLRFVSRMLRGWPSPVPINLRNAVCNQWSLEVGHVIAYVGGRRGSQAVSGPPGDVSRAEQIQALRLVLRSLMGDAAMLNHLSEAGFAKTVDETFALLLDPGRLSRLTELGLAEIFGSIESALWTGPPRSPEIRTLRVRYLRTLVRTGTDESVPVPLRKLAAQEAVKLGG
>NZ_CP007139.1|WP_038472525.1|914357_915410_+|hypothetical-protein
MGLANVTVLVVLALGGAQAKQTKRVKRPAQAAKMIQAKLTLGQPVQLGSVAVVPIESTLPLSREEYMTLFEAMKLGVVKVIEVQGGGEVNDVEVENNGTRPILLLAGELLLGGQQDRIVAKDCIVAPHERRRVPVFCVEHGRWNGTPAFQAADTLVVAGVRATASESQDQTKVWAKVAETNGKAKAAPSTGTIRGTLNDPTVKKNADRLLAEMKAKFHQSGKTVGMIFWLNGKVESADIFGNPNLFAHNRDKLLKSYSVDAQLAPHSKKTSVDQKVCSQFLADIVKAGRSRGERSAMGNTFRLQDGAIAGYESGNRSFSGGLASPSSVIGGSPGGLGHGTYHPKDKKGGG
>NZ_CP007139.1|WP_052547532.1|912296_914243_+|excinuclease-ABC-subunit-UvrA
MAHERRGNDRIVVVGARENNLKNVTVEIPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDHIDGLSPAVSIDQKSSSKNPRSTVGTVTEIYDYLRILFARVGTPYCINGHGPIERQSTDQIVDVAQSLPEGTRMQILAPVVRGRKGEFKSVLQDISKAGYVRVRVDGEMYEVTDEIPMDRYKQHTIEVIVDRIVVKEGIERRLSDSIEAALKMGSGLVTLSLDFKEGAEIPARVVQLLEQQAESDAASDSGSAVDILFSEAYSCPVCGYSLPELEPRLFSFNSPFGACPECTGLGTKTEFDPELITPDDSKPLRDGAILPFVYKSGEVKDWWPEMLDAVGKAVGFDAKLQVREIPPEGMHAVWYGLEEPITVVMKYSRTERSFKTEWKGVLASLRKRYDETESEWVKGDLEQYMATKPCPVCHGKRLKPEALSVKVAGRDMSEVTSMAIEDALGYFQGMAAQLSTRQLAIGERAVKEVLERLRFLQDVGLGYLTLDRNARTLAGGEAQRIRLATQIGSGLMGCLYILDEPSIGLHQRDNRKLIETLKRLRDIGNTVLVVEHDEETMLEADHILELGPGAGEHGGHIVAEGTVAEFLKSDALTAQYLNGTREIEIPKERRAPKTPSPV
>NZ_CP007139.1|WP_025227131.1|911647_912220_-|Uma2-family-endonuclease
MSVAPLHLKRWTRDEFHRVIESGLMEPSKRLELVDGQIVEKMTHHPPHVICIEAITRLLILRVGQTHSIRSQAPIALSDISEPEPDLTVVPGRPADYLKGHPTPEQIDMLIEVSDSSLDRDRRYKVPLYAKAGIREVWLVDVDGRRLEAYREPSPEGYRIVTTLAYTERLAPLFAPGILINVIDLLPPAQ
>NZ_CP007139.1|WP_025227132.1|909289_911326_+|S9-family-peptidase
MPKRPIRAEDLLRIVFVGDAQISPDGDRVLFAKKTIDDKNKYITNLFTVDLEGRLTQWTQGEAGAGQGRWSPDGSQIAFVSGRDKPNSQIYLISASGGEARKLTSLPEGSLGEMRWSPDGRMIAFGFREQIPDRTEKAKKEREEKGLSSPPLVTDDVWYRLDGDGYFGMQRYRIYVVEAETGKLVGANGHDWLYDENLYAEFSFDWSPDSKELAVARSASARPMSEPPNTQIWRVDLTGQAWKLEGLPKGEKGSVRWSPDGWWIAYAGDVDENDPWGTRNTKIYVVRADGGEPKDLTGHLDYDMAAGTLSDTKDAGHGAVLEWKPDSTGLYVQVGHHGETQLGFVDVHGGVELLTEGHGHIGIGNVSSDGRRIGAIVGNATRLPEVAVIQAELGTGRLVPKVLTNLNGAFHDEIQLSEPEEVWLDSTDGVKVHAWVMKPIDYLEPRRYPAALQIHGGPHAQYGWAFFHEFQLLAAQGYVVVFSNPRGSKGYGEAFCKAIQGDWGNKDWEDVQTVTRWMQHQPYIHPGQMAVMGGSYGGYMTNWVIGHTDDFRCAISDRCVSNMVSMAGNSDFPFNKNGYFKGVAWGDLDAIKELWRQSPIAYFENVKTPTLIIHSEGDLRCNVEQSEQVFTALQQQGIESRFVRYPSNTSHGMSRSGPPDLRLHRLGEMVSWLDKFLK
>NZ_CP007139.1|WP_038472518.1|908876_909197_-|hypothetical-protein
MLFKLVWSLAMLSLAAYMQARARHTLEHGDDEDADIPRGPLRRIFSRFWGYVRWAWAILFIVAGVAVWFSWLWALAVLALSSLPPLVGKAVIREAQERTLGGRRRK
>NZ_CP007139.1|WP_025227134.1|906862_908821_-|hypothetical-protein
MEPNCKPLTDVLDDLQKVAGDAPFLALGQTVFWDEPMKAGVSLMAKRLGKPRRLIAGVHDTDYFAKLPSGSRGNNGRFKALPHNDTTTRGLWSAAGEFSALFGSETVITREMLLAAGLRLSRLQQARPNILDEATEAWGWRGIVALGDHAPVTAEVPLKQLLPELMSTFDWATQVSLDMLAGEGRQMAEKLMDELRGEICDLSDGQATTLSEFYQRLLPIFYDFCANAHVDLETTRTTELLRFNPSTAGLPRFEMFGLFVDPNTREMANAAYDEAIQGSSGLYEVSRFGTGAIPFDLVIPGLGRGTIRLGKKAAVINTPVPQFLTYRKPLTCLRDLAELIEAKFGSNCVVVGKAVALIGMLARDHVFVFHEGASSYVKHSRRLHEILAAKGHPLPMNPILRIRYDTWAALRVCCSWLRLPEPLQRPFGTEEVCAPSLSNRWRDVADEQRGILSELGKLRRPIELIRFLDQRLGGSWRCLAEEYEGLHSRLQALQEDLAKLKEQRRALYTELRELRKLRVEAEMAKGRHWRERIFEKEPAPGDLAERERLTQEVEKVLHARTDADRRVHELRREQQALVSHPEVQRVHERRQSIELEAELKRLRIIRQAVTASRGMEQANRRPSAWWFRIVCPDGLWFRETVETAEYYLEPLS
>NZ_CP007139.1|WP_025227135.1|905903_906866_-|diaminopimelate-epimerase
MIRRIPFWKLQSVGNDFPLVHLADIDAALEFERQEELAKAPEIAPAQVVKECSVTPDQALPDPGKATEFLGRLSIAICDRHFGVGGDGLLAMGMEGEAVRLRMFNPDGTEDFCGNGIRCAAVHAHAMGWVGSDFTIKHLDREVPTHIGEGQVSTVIGIADYDPKKVPHTGFGEIFNRTVWSGMDGGQPLSLFGSALTTGSTHVVIPTTALPDQEIFESVSAKIEVDPQFPDRTSVIWSKEVAPNQLELMIWERGVGETLGCGTGSSAAAADYLRRKGRGGTVEIKSKGGTLQVEMSDWTAPIQISGTAEQVYRGEFAFKA
>NZ_CP007139.1|WP_025227124.1|921156_921774_+|hypothetical-protein
MTGPLDPGLWVVIAMVAIVHFTWIGVRRFGSPFRLGYLAIGLLTTLIGLLMCGAGLFSSSPPAHPSPLIFIVPLLSGLTWAACARTPGMAIGAVAIAFFAGHCLNLVVTSLATPTYGVSQAEFRSISESVAAIDHPIPRGFLSPEEIPGQATLTYSEPATAWYSPLTGITSSQIHRYRIWTPGGTPAEAAKRLRLVPDDAPEPNS
>NZ_CP007139.1|WP_025227123.1|921828_922602_+|hypothetical-protein
MEFGNDPAKWLVIALVAVVHLAVWAGYRFGGPFRWKGLAVALIPVLFCGPIPMFGQDLRQFWVLLTVPLLAGAYLALRLRSNGASFAAVACSMLVGGGLVGLASNCGAGATYMVGPIEWASNGQSATPSQILDDLAYRSERHGIGALKPRIQKAGYIDQWILPNNVRAPEGTVSFFYPVREWHSSITGLWTRRLRTFRIWTPAGPIERAIANARLVESTPGFPPASPSDPAPGLTRPQFETEFPQLAEAKISLLSND
>NZ_CP007139.1|WP_025227122.1|922621_924847_+|hypothetical-protein
MLPLLVALAIQTWGGPDTWAFAPPPDDFRSDAMLDLRYLNEKVAGESGYVTADDKGDFRLGNGKPVRFWAVNSGVGRDVPFHPRPLGRQTEPDLARHARFLAKRGVNMTRLHAQLSPDLGKHPDAKITDVNVEERDWIWRSVAAMKKEGIYTTISPYWMVPMKFSKAWGIPGGADQSAAGLLFFDRTLQTGYRAWLRALLSEKNPYTGIPLAKDPSVALLELQNEDSLLFWTFGNIKGPQKHALGARFGEFLVKRYGSVQKTITAWQGEKLPEDDSAAGVFDFYGLWEVPNQLSAGKSQRLGDQIEFLTETMRQFNKETADFIRNELGCKALVNAGNWRTADPTRLQDAERYSYLPTEVDAVNKYFSGIHKGPNEGWAIVNGDKFTSPSLLLDPRPGPFNLKQTHGRPIVVTESSWVMPAGYSSEGPLMTAAYQSLTGVDAYYWFATGDDEWSQPGSANGYTPSQTKWLFANPDMLGTFPAAALMFRSGYVKRGTPAVYEVRRPADIWKRRTPIISEEPGFDPNRDSKDVVPGMPVTSGVNPLAFLVGPVEVAFGDDPAKSRVDYSKYIDAGTSTVRSNTGELALNNDKGFCTIDTPSAQGVAAFFGKHPAFKLSDVTFISRNDYGAAAAVSMDGKPLRESSKILLQFGTRSRPTGWQEKETTIDLGGGKSTPGLEVVSFGKAPWQVVNADLEIAIHNPSITRASVLDMNGNAIGVVPLKREGEIVRLTFPKNAMYVILGR
>NZ_CP007139.1|WP_025227121.1|924924_925803_+|MBL-fold-metallo-hydrolase
MKVHHLNCGTMCPLGELMINGHGSPVSRGHLVCHCLLIEGPDGLVLIDTGLGTQDIMRPKHRIPGPILNTVLGLALDQKETAITQVRALGLHPRDVRHIVLTHLDFDHAGGLADFPEAQVHVFTDELHNFLNSANPIDMIRYSQEQIAHQPDWEVHELEGERWMEFEAVRAMTVGSSDILLVPLAGHTRGHCGVAIRAGDGWILHSGDALFDLNELDPEGRHLPVGLRTFENMLQYDREKRIQNVERLRELKKAHGDSIHFICSHDPDGFEADAADGIKEFASTRIGRAEML
>NZ_CP007139.1|WP_025227120.1|925955_926564_+|short-chain-dehydrogenase
MKIIVIGASGTIGSAVVDLLSERHTVVRVARTAGDYHADLTNPDSIRSLYEKVAPFDAVVSCAGSARFKPLEALTDDDFTASLSNKLMGQVNLVRLGQRYIQDGGSFTLTSGVLANEPMHGSAAISLVNAGLEGFARAAALELLPRKIRVNVVSPPWVSETLVAMGKEASGGMPAAEVAKAYVESVENRSKDGEVLDARKFA
>NZ_CP007139.1|WP_025227119.1|926886_927987_+|quinolinate-synthase-NadA
MYQAPLPKEYADLSPEEADARIEAAKRTLGNRLVILGHHYQRDGIIKHADYRGDSYKLAKDANLCPDAEFIVFCGVHFMAESADILTPDHQHVILPNMAAGCSMADMASLFQVRNCWKQIEEVLGANGPRVVPVTYINSAANLKAFVGERGGTVCTSTNAPTAVKWALEQGEKVLFFPDQHLGRNTGVKLGYDPDKDMIVWDPFQPYGGNSPERIREATFILWKGHCSVHKRFTVEQIEEARQTHPGVTVLVHPECPLEVVEAADLNGSTEYIIKQVEASPPGSVWAIGTEINLVSRLANENPDKTIFCLDPQVCPCSTMYRIHPSFLAWTLENLVAGNVVNEVIVPPKVKYFAKMALDRMLTVCA
>NZ_CP007139.1|WP_025227118.1|928358_930434_+|excinuclease-ABC-subunit-UvrB
MSIVKFNEPLRLAQDFAPKGDQATAIAGLVEGLESGYRFQTLLGATGTGKTYTMASVINETQRPALILAHNKTLAAQLCQEFRAFFPENSVQYFISYYDYYQPEAYVPGADLYIEKDSSVNDEIERLRHAATHALLERRDVIVVASVSCIYGLGSPSEYAEAVITFETNGTFDLDEALKKLVAMQFSRNEVALDRGTFRVRGDTLEIQPKDEEIVTRVEFFGDTVERIRLFDPLTGEVIDEPTKVSVFPATHYVTPWERMEDVLEMINAEKEAQCELFVAQGKLLEAQRLRQRVDFDVEMMKEVGYCNGIENYSRYFDGRAPGTPPYTLLDFLPSDAIIFVDESHQTLPQVRAMFNGDKARKSILVDYGFRLPSALDNRPLKFEEFLERVPQVVYVSATPGPFEQETQSQIVEQIIRPTYVVDPEIDIRPTKGQIDDLIGEIQKRVERGERTLVTTLTKKMSEDLTGYLQDLNVKVQYIHSNVHSLERPEILRDLRLGVYDVIVGVNLLREGLDLPEVTLVAILDADKEGFLRSETSLIQTIGRAARNAGGRVIMYADNITGSMQRAIDETDRRRETQRRYNEEHGTLPQTVNKMVRETVRSYESVKEVVDQYSAETRAKLGADGGAIRLDELPILISNLERDMKDLAKAMEFEKAAQVRDEIESLRALMGTSSGRLGQDKRRVKRFAGKR
>NZ_CP007139.1|WP_144240989.1|930557_931151_-|hypothetical-protein
MAPPTVWTSRRKIMGNLVPALFWLPFAVSGLAWMAVKSEVLGGGLALLVTGTVVGWFALNRFGLFENRRMRAQLERILHANGETLAGEKWFVGFATPRYSSTVDPHEDIGFLEVTDDRLRFLSESRTVEVLRADVSEVRFRANVHSLLGLGRWVSVEGKVGEKPIRLMVEPRELPTLLGNRREGARLRTRLRSWAAK
>NZ_CP007139.1|WP_144240990.1|931288_934171_+|PD-(D/E)XK-nuclease-family-protein
MKVLSAVPGPTSVGPIIRQFCGRGEGVVTAFSDSALPVCKRFVQEDDAVEVLALGEVVSRFLRMCGESAQPLSQAGQVEAAIARACLELPAESPFSRTARYPGLHKALNRTLKELHEWEIDRDEMLDLASVATPRLSAKLQSLAEIDKEVDSVMLALGRQSHSAQLRACFDSLPERDGSFDRLLILAGSEESPLRLRWIQWAVDQGTDITLIVERHAADAPIFAGSRRTLEALGFPGIPTGDGNALTRNLFAPDLTGGPGVDVAIVSAADPLAEAEWALRGCMEEERPDQAGIYVRNLETYAPLIEAAAKRLGIPVRIARRAPLLTNSFARLTLAALEFCASNDVRTLGPILQSSYLGLTGEGQARLASGLRECHSMRSMQWETLRTWADIHEEEFPWVGALLEWRQKASGSLLLREWKALVTELICADERFPWSTRIMGRDRMMAERDRRARHQLERLLANFVTVDAIVDERSMTLSEVTAICRRVWKDADVSIPPSSEVGVCVADDPYALTDVETLRVMGMLEGVFPRRRSEEPVLTDYDREEISNLRPGHPPLLNSHDKAEAERDAFYRVCTAARRQLVFSYPLADDSRDNIPAFYLTEVERAAGGHEKVTRKDWARTLLAPLGDECVTENDRILRQSLDAPRESPSAVELISQAARDALRPELGHRFAPGELRDALQCPFQYALRHRLHLRVRRRGARWQSLRKLPQASGLVGKESREHAEHALIEALQAELDSLYSEVPDWEMQLLRAGGRRLIREWLRREFRSREMWPKEIGSIRGNVAFGADGLRDAMPGGVLLEGVVPAVSRHQRYSVAHLYGSGARDPKNLTEVEKLYYGLYFLALHESGREGALEIESMRGKRELVVLTRAGGPVNGFAQDGLSVVDLATADDPALSKKIFFDDVKRALKRAVERIYDSRVDAMKGDHCDWCDYGELCRRSRAFGEEDSPFGTDVVFEDV
>NZ_CP007139.1|WP_025227115.1|934261_936595_+|UvrD-helicase-domain-containing-protein
MSNAAQALSLSTEQSDVVQTREAHFSVVAAAGAGKTFVLVERYLRHVVEEDLRPDQILTITFTKKAAAEMKRRIVRRLRDQGLNDQAQNAETGPIQTIHSFCERLLRENALEAGLDPSFEILTESHSSRLVSACVREALASPLDDEPQAEALISFLAGKRPGFGENKSPYGILESAVEAVLRDLRGSGFSQLQIQQWHLDPRTLRDRWEDLLLRELSPNAQAAFANIEADSFQERMQQALKSVGEKVPGWLKNRPDLQAEEEALEQTCGLVQLACAAWWRLDREMDAEQALDFSALEERAVRLLERSEATRERLQRQVQVVMVDEAQDLNPMQYRLLRRIEASREMLVGDAQQSIYGFRQADVELFERRAVEGHTLRLSRNYRSVPGILNFVDFVFGRLWHESYVPMSNLDAPMDLENDVPRDFAGVEVWRQAANDADATATYIRELLDEGIAKKDIAVLVRDGGGAQAIETGLKGVGIPARVAGGTERFYTRLEVRDLANALRAVADPYDDFSLLACLRSPLVGLSLDAITLLGREAGVVERLAEFESPVDEDGPKLEAFLRWYERLRGIADRLAAWEVLAEIFAKSELLPALARREKPEQLLANVRKLLSLATQEPDLGPLEYAERIREIQDLRHKEGDAPADEEDADVVTIMTVHKAKGLEFPVVVLPQTDKRLAANARDLVVEPRMGLVATKYGKGQCLMHKFLTERRKRRDEEEELRVLYVALTRPKQRLCVSLYPPRRDRTVSKMLQELLGDPPPPGVRVRDSQDLSQMPV

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Crispr_ID: NZ_CP007139_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007139_2

1430833-1430922

Orphan

Consensus_repeat	Method
AGCCAATGGGTCCCAAGGGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007139_2

>merge|NZ_CP007139|2|1430833-1430922|CRISPRCasFinder
AGCCAATGGGTCCCAAGGGCATCTTGCCGTTGGCGGATTATCACGACCACCCGTGGCACTGGCTTCCAGCCAGTGGGTCCCAAGGGCATC

>NZ_CP007139|2|2|1430833-1430922|CRISPRCasFinder
AGCCAATGGGTCCCAAGGGCATC	TTGCCGTTGGCGGATTATCACGACCACCCGTGGCACTGGCTTCC
AGCCAGTGGGTCCCAAGGGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007139.1\|WP_025226686.1\|1432714_1433455_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_CP007139.1\|WP_084179755.1\|1433512_1434097_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_CP007139.1\|WP_052547587.1\|1422626_1423409_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349968
NZ_CP007139.1\|WP_025226693.1\|1426565_1427036_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007139.1\|WP_025226692.1\|1427007_1427457_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP007139.1\|WP_025226697.1\|1423656_1424274_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP007139.1\|WP_025226688.1\|1430988_1431639_-\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153245
NZ_CP007139.1\|WP_084178851.1\|1437310_1438201_-\|DNA-processing-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP007139.1\|WP_025226696.1\|1424270_1425068_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226686
NZ_CP007139.1\|WP_025226684.1\|1434093_1435035_-\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319935
NZ_CP007139.1\|WP_025226681.1\|1436036_1436738_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP007139.1\|WP_173425321.1\|1435126_1435474_-\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP007139.1\|WP_025226694.1\|1426086_1426497_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|274650
NZ_CP007139.1\|WP_025226691.1\|1427558_1427798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226682.1\|1435554_1436034_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP007139.1\|WP_025226695.1\|1425114_1425942_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274737
NZ_CP007139.1\|WP_025226680.1\|1436938_1437274_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226689.1\|1429556_1430744_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224662
NZ_CP007139.1\|WP_025226687.1\|1431626_1432718_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP007139.1\|WP_025226690.1\|1427900_1429502_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|119333

Protein	Function_ID	Function_description	E-value
NZ_CP007139.1\|WP_025226686.1\|1432714_1433455_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	1.53105e-145
NZ_CP007139.1\|WP_084179755.1\|1433512_1434097_-\|alpha/beta-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.26845e-55
NZ_CP007139.1\|WP_025226697.1\|1423656_1424274_-\|redoxin-domain-containing-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	2.87493e-48
NZ_CP007139.1\|WP_025226693.1\|1426565_1427036_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.30012e-16
NZ_CP007139.1\|WP_025226687.1\|1431626_1432718_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.85189e-26
NZ_CP007139.1\|WP_052547587.1\|1422626_1423409_-\|RNA-methyltransferase	gnl\|CDD\|349968	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.584e-43
NZ_CP007139.1\|WP_025226688.1\|1430988_1431639_-\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153245	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.	6.88541e-66
NZ_CP007139.1\|WP_084178851.1\|1437310_1438201_-\|DNA-processing-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	2.79046e-23
NZ_CP007139.1\|WP_025226696.1\|1424270_1425068_-\|hypothetical-protein	gnl\|CDD\|226686	COG4233, COG4233, Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.29244e-32
NZ_CP007139.1\|WP_025226684.1\|1434093_1435035_-\|ring-cleaving-dioxygenase	gnl\|CDD\|319935	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	4.4998e-58
NZ_CP007139.1\|WP_025226681.1\|1436036_1436738_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	5.28225e-112
NZ_CP007139.1\|WP_173425321.1\|1435126_1435474_-\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	8.80292e-18
NZ_CP007139.1\|WP_025226694.1\|1426086_1426497_+\|OsmC-family-protein	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	2.04304e-60
NZ_CP007139.1\|WP_025226682.1\|1435554_1436034_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	0.00312049
NZ_CP007139.1\|WP_025226695.1\|1425114_1425942_-\|hypothetical-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	2.52091e-124
NZ_CP007139.1\|WP_025226689.1\|1429556_1430744_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.96034e-67
NZ_CP007139.1\|WP_025226692.1\|1427007_1427457_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	7.88009e-13
NZ_CP007139.1\|WP_025226690.1\|1427900_1429502_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0

>NZ_CP007139.1|WP_025226689.1|1429556_1430744_-|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein
MDKTFAILGAGMQGTAAAYDLAKFADPATILLADARIEQADRSAQRVNALVGRTICRPMQVDALDPEALAAFLQPVDVLLSCVPYWMHPRIAKVAIETGTNMCDLGGNTEITMETLQLDEAAKAAGVTLIPDTGLAPGLVNSVGKFLIEKLDEAESVCLYCGVLPQHPIPPFNYKLTFNIEGLLTEYDYKAVVLRDGEIVMVDTLSELEEIDVEGLGRMEAFTTSGGTSTAPYTFQDRVTSYQYKTIRFPGHCEKMRIFKDFGFWGEEPVDIKGSVVRPRDLFYKVFGDRLAAIQDTDQCIVRGVGEGIRNGERVRLQVDIHDRQCEATGFTSMERTTGFSISIHAAAIAAGEVPPGAIRYENAITGARFMEEIQRRGITFKFSEERLGNVRLAV
>NZ_CP007139.1|WP_025226690.1|1427900_1429502_-|beta-N-acetylhexosaminidase
MSQLAQSLAIIPLPAVIEPREGSFVFGPQTRIAVSLDSRELGERLRSELRPAMGFSLELTGRGGKDTISLGLDRSLKLGPEGYQIEAAADQIDIRAVEPAGLFYGIQTLKQMLPAAVFRQGRQEGVEWSVPSASIKDSPRFGWRGAHLDVSRYFMPKEFLLKFIDLLALHKLNTFHLHLTDDQGWRMEIKKYPKLTEVGAWRSDSMLTYDPPTHDGKPHGGFYTQEDLREIVAYAKERFITVVPEIEMPGHAQAAIAAYPELGNSGLPLPVGVTWGVNENVYSVDEATIQFNKDVLAEVMEVFPSKFIHIGGDEVPKTQWKASKAAQARIKELGLRDEDELQSWFVRQMDTFLAEQGRRLVGWDEILEGGLAPGATVMSWRGEEGGIAAAKAGHDVVMAPNQWTYFDHYQSRDHASEPHAIGGFLPLQKVYEYDPIPPDLTPDEAEHVLGAQGQVWTEYIATPKAVEYMAFPRLSALAEVVWSPVDKKCFDGFVTRLQKHLERLEAKDVKYRPLSPQPHPLNDLEPELASNLV
>NZ_CP007139.1|WP_025226691.1|1427558_1427798_-|hypothetical-protein
MLKNQSTVVCKETGTEWRIERRTRGQDRDGGPGGKPIQTWVFVLTNKLGHRRFVAQERMAEFFGTEEAAVAAPAADSSE
>NZ_CP007139.1|WP_025226692.1|1427007_1427457_-|DoxX-family-protein
MKGNSRIDVGLLILRIALGSIVLIYGCQKMLGIFGGHGFAKTLEFFSGTFGIPEVLGILAILTEFFGSICLILGIVTPVAAFGLACNFAVATYINLRAPGAVAGVFSSGDPAKMSNVLYPTALFFMSVALLIMGAGKYSLDAKFFRGRR
>NZ_CP007139.1|WP_025226693.1|1426565_1427036_-|GNAT-family-N-acetyltransferase
MPSSSAAAANAIRPATRADIGRVWELVLELAEYERLTHTVVGDASALERNAFDDRLIEIFVIEEPGEIVGYTISYRTFSTFRTQPGTWLEDLYVTPECRGKGYGKALLQNLIDRSRERGDGRLEWSVLDWNEPAILFYGSMSATVLPDWRVCRFDL
>NZ_CP007139.1|WP_025226694.1|1426086_1426497_+|OsmC-family-protein
MIRTAHAVWDGGLKDGKGVVSTQSTALNGMQYSFRTRFEDGVGVNPEELIAAAHASCFSMALSAQLGDRGISGKVDTTAAVTMENLAITKSALTTTVTAPGADRAKIEEAAHAAKEGCPISKVLNAEITLDLTIDA
>NZ_CP007139.1|WP_025226695.1|1425114_1425942_-|hypothetical-protein
MPYAYEVKPGGNVNLSQIDPEDTAGLDKEEGLRQLFKLGERMAELQELLFAARQHSLLIVLQGRDTSGKDGAIRRILDFVNVQSTRVATFKVPTENELAHDFLWRVHAETPGKGAITIFNRSHYEDVLAVRVHEFVPKPVWKKRYDHINAFERLLTDSQTIVLKFYLHIDKKEQEARLLEREKEPEKSWKLSVGDWEERKLWDKYTDAYEDAIQKCSTQEAIWRIVPANHKWFRDLAVAEAVIRALEPYEDGWREALAEQGKERTAELAEYRAKK
>NZ_CP007139.1|WP_025226696.1|1424270_1425068_-|hypothetical-protein
MIAILTAAMLGQTPPQSQASLVSSMRAVSPGQSFDVALRLSLKPGWHVYWRNPGESGIPPTLQWTLPAGWKASEIAWPVPHRTLEKGISNFIYQGDVLLPVRIFTSKATPPGSVTLKATAKWLVCRETCIPGKAQLSASVVVGGYPVADPDWASRLSALDEQIPRHVPELPLSASRRGNTISLSIAPKAAVSGVAFYPADDLIDPGAKQPLRQRDGKSELLLTIASYAPSNVERLKGLLVAPKGTTWAPGLEAITVDIPIQRKKP
>NZ_CP007139.1|WP_025226697.1|1423656_1424274_-|redoxin-domain-containing-protein
MKSTSLFLVGLATIASVAAVRQNATTHIIAGEPTQSWSLTDSNGKKHSLSDYKGKFVVLEWTNKDCPFVRKHYESGNMQATQAKAKEMGAVWLTIISSAPGNQGYLSPSEANAYRSEMKVKSAATLFDTAGKVGRNYGAKTTPQIVVLDKAGNVVYNGAIDDRATPDPEDIKGAKNYALAALSEAMAGKKVTVATSRPYGCSVKY
>NZ_CP007139.1|WP_052547587.1|1422626_1423409_-|RNA-methyltransferase
MAEGARFLAAAWREAASFAGLVVCPALLHGEDAWGMVDRLRKAQVPTLRVDPRTYASVSLCHSSPDDPVERLPAAARQGILAIFRQRWEPLPDRLRRNDLWIGVESVRTPGNFGTMLRGGDAVGASGVIVFDRSEAGTPTGPDPYDPAVVRATMGSLFAHRLIRTTHRDFRRWAGRSEISAIGATPEAATDYRSITYRRPVLLMMGDERAGLSDGQRGSCDRLVRIPMVGSPDSLNLAMAGTLMLYEAYNQRHPVARRER
>NZ_CP007139.1|WP_025226688.1|1430988_1431639_-|lysophospholipid-acyltransferase-family-protein
MDRLKYGWRAVRPRLISGVLYGILRFLGATIRMRLIDEPEDEARTIFCGWHGRSLLFANRYRGRGWWVIISQSNDGEMQTRIFRKLGFQIIRGSTGRGGVRAAVEAIRALKDGGTMAITPDGPRGPSGVVQGGVMLMAQKSGAKLVPMGISARPRIFIKSWDRYMFPLPFGRGIFIFGEPLTVEKDADEAEVERVRLKLQEEIHRLEAEAERMLGY
>NZ_CP007139.1|WP_025226687.1|1431626_1432718_-|rhomboid-family-intramembrane-serine-protease
MIERRVPIVTLILIGANLVAAFALIISPSLAEELGFNPARPRLSSAVTGLFLHANLFHLLGNMVFLAAVGAAVELATGSLRFALVYFFAGLCGVAVHYLVTRGTQSPASLVGASGAIAGCAAYYSVRYTGLKVAFAPHRALSVAAVTGIWVILQVVGAFVRVGQTEGGTSYWAHLGGFAGGVLLSLLFRAPDLGQIRLGHEVLEQMNDRGPGAVVTAATRHLEKHPRDLKALWELANAQRLLGEGEAEADVLLRLLEIESEEEVPEVLRRLCQAGRVTRLPTLRRLQLADRIRLSSPAIAKALLRSVVEGERSEPQRPDAILSLATLERDESPVRAEELLGELSSEYPMHPAAELARKRGWIG
>NZ_CP007139.1|WP_025226686.1|1432714_1433455_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWKNIKIRKGKQDAIRGKMFTKMSKEIIVAAKMGGGDVSMNPRLRVAVEKARVNSMPVDNIKRAIARGTGEIEGADYEEIVYEGYGPSGAAIMLECYSENRNRTVSEVRHAFAKHGGNMAENGSVSWQFKHLGQIVVERGSLDEDEFTLAALEAGAEDVVVDEESFTVYTAMEELHKVNEAMEKAGFKPQDVNLTYIPTNKATLSEADQIKLLKLLDALDDLDDVQETYVNVDIDDEALEA
>NZ_CP007139.1|WP_084179755.1|1433512_1434097_-|alpha/beta-hydrolase
MSDFIHLEEPGDPTLVMLHGTGGDEIEMLQFGKELSRRTGFLSLRGKEPEGRVNRWFRRFGEGVFDEPNLRMRTEELADYVMEKLPEKKRVAVGFSNGANIAAATLLLRPEAFDAAALLAPMVPLQPDTLPDLGGKPILMICGERDPMVPRMNALALATMFETAGAALELHWHPGGHGFGPAELNVLKAWIARL
>NZ_CP007139.1|WP_025226684.1|1434093_1435035_-|ring-cleaving-dioxygenase
MPARILGIHHMSAISGPAQENFDFYSGVLGFRLVKLTVNFDDPTAYHLYYGDGAGSPGSIVTFFPYPNGYPGRPGSGQVTVTSLSVPHGSLTYWADRFKEFEVDFDRVAHRGSGHVLPFRAPDGLPLELVAASDHVPGVEWDDTDVLPEFAISVVRSVTMVVRQLEPTAELLTGLLGFRLADERENRHRYEVAEGGPGKSIEVVVDAEGPVGRPGHGSVHHVAFRIADDAEQLAAKAELTAAGFQVSPVMDRDYFRSIYFREPGGVLLEIATDGPGFTTDETLEDLGGGLRLPSQFANHRRQIERSLPPLKIW
>NZ_CP007139.1|WP_173425321.1|1435126_1435474_-|four-helix-bundle-copper-binding-protein
MDECIKNCQECHAACASLIPHCLHLGGSHSSKEHIGLLQDCAHICATALSFMLRESPRHTLTCGACAAVCRECATDCEAGANGDAWMLACAEQCRTCADSCARMVSLRMPAVSMH
>NZ_CP007139.1|WP_025226682.1|1435554_1436034_-|DinB-family-protein
MDELWKQSAIDLLDEAYVSPEYEHTWFKDNDPDSSLIPSFRSLTAEDAERKPVVGRNAVAGHAVHLATSLEGAAIAMRGGPYAVDWEKSWEFPRPLTQAAWEEICDRLERAYLDVRGIVAANTDWSNPIYSKSVQALLAHAAYHLGSIRQIAADRLPRA
>NZ_CP007139.1|WP_025226681.1|1436036_1436738_-|CoA-transferase-subunit-A
MNKVFPDATSALEGLLFDGMTIMSGGFGLCGIPEHLILALRDSGVKEITVISNNCGVDDFGMGLLLQTRQIKKMVSSYVGENAEFERQFLAGELELEFNPQGTLAERIRAGGAGIPAFFTKTGYGTLVAEGKETRDFGGEIYVMERGLKADLSVVKAWKGDASGNLIYKETARNFNPMMATAGKVCVAEVEELVEVGELDADNIHTPGIYVDRILMGTHYEKRIERRTTRPRG
>NZ_CP007139.1|WP_025226680.1|1436938_1437274_-|hypothetical-protein
MRVLLFEDNLMWSSRLVQTLRGHGHEPLLRMGIPSESEGASVAVINLGSASPDPKELVAKLHELGVKVLAHAGHREKELMDLGRAAGADRLATNSELTFKLPALLDSFGRD
>NZ_CP007139.1|WP_084178851.1|1437310_1438201_-|DNA-processing-protein-DprA
MGTLCDVEPCLEEAHVALVALYLRGAPRPFTPSPRLWPQVVSAIRESGVPGQIPSALRAKGLGREAWLVEEPSLWTWAASAASSSLSVMSQGYPARWRDVLGAAAPPVVWARGARSSGGGRLIGVVGSRDVGPRVARFAHEAAREAVRLGFGVVSGGAEGCDAAAAQGAVGAGGSVVTVLPCGLSCRREAGLGLELSVCAPDEPFSTAAAMERNALIYAASGATVVAQARLRTGGTWHGATDALRRRLTRLLVRVDATSVAHRALIGLGGVPLSTPCDLGDAVTAAAPQSALFALG

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Crispr_ID: NZ_CP007139_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007139_3

2136578-2136660

TypeI-A

Consensus_repeat	Method
GGGCAGGATGCCCCTGGGACCCACTGGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP007139_3

>merge|NZ_CP007139|3|2136578-2136660|CRISPRCasFinder
GGGCAGGATGCCCCTGGGACCCACTGGCTAGAAGCCAGTGCCACAACGAGCACAAGGGCAGGATGCCCTTGGGACCCACTGGC

>NZ_CP007139|3|3|2136578-2136660|CRISPRCasFinder
GGGCAGGATGCCCCTGGGACCCACTGGC	TAGAAGCCAGTGCCACAACGAGCACAA
GGGCAGGATGCCCTTGGGACCCACTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007139.1\|WP_025226065.1\|2140473_2141205_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP007139.1\|WP_025226068.1\|2138829_2139351_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP007139.1\|WP_025226066.1\|2139812_2140298_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381601
NZ_CP007139.1\|WP_025226079.1\|2125030_2125222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226070.1\|2135826_2136516_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP007139.1\|WP_084179013.1\|2132708_2133692_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273213
NZ_CP007139.1\|WP_025226071.1\|2133718_2135845_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236674
NZ_CP007139.1\|WP_025226064.1\|2141201_2142779_-\|ABC-transporter-substrate-binding-protein/permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP007139.1\|WP_025226075.1\|2130849_2131068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226077.1\|2125684_2128003_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|366030
NZ_CP007139.1\|WP_144241083.1\|2142868_2143018_+\|lmo0937-family-membrane-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226063.1\|2143074_2143428_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226067.1\|2139347_2139671_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP007139.1\|WP_025226076.1\|2128221_2130780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007139.1\|WP_025226073.1\|2132404_2132734_+\|cyclic-di-AMP-receptor	unknown	unknown	gnl\|CDD\|283747
NZ_CP007139.1\|WP_025226074.1\|2131118_2132366_+\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP007139.1\|WP_025226078.1\|2125231_2125651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350335
NZ_CP007139.1\|WP_025226062.1\|2143475_2144741_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380569
NZ_CP007139.1\|WP_038472940.1\|2136677_2138147_-\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
NZ_CP007139.1\|WP_144241358.1\|2138233_2138830_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955

Protein	Function_ID	Function_description	E-value
NZ_CP007139.1\|WP_025226065.1\|2140473_2141205_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.32388e-145
NZ_CP007139.1\|WP_025226068.1\|2138829_2139351_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	2.15428e-21
NZ_CP007139.1\|WP_025226066.1\|2139812_2140298_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381601	cd01021, GEWL, Goose egg-white lysozyme. Eukaryotic goose-type or G-type lysozyme (goose egg-white lysozyme; GEWL) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Mammals have two lysozymes. This family corresponds to human and mouse lysozyme G-like protein 2.	1.16542e-14
NZ_CP007139.1\|WP_025226070.1\|2135826_2136516_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.54489e-89
NZ_CP007139.1\|WP_084179013.1\|2132708_2133692_+\|AAA-family-ATPase	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	2.02759e-43
NZ_CP007139.1\|WP_025226071.1\|2133718_2135845_+\|GAF-domain-containing-protein	gnl\|CDD\|236674	PRK10364, PRK10364, two-component system sensor histidine kinase ZraS.	1.1007e-37
NZ_CP007139.1\|WP_025226064.1\|2141201_2142779_-\|ABC-transporter-substrate-binding-protein/permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	9.71946e-94
NZ_CP007139.1\|WP_025226062.1\|2143475_2144741_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	1.60484e-48
NZ_CP007139.1\|WP_025226077.1\|2125684_2128003_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|366030	pfam00326, Peptidase_S9, Prolyl oligopeptidase family.	4.84995e-14
NZ_CP007139.1\|WP_025226078.1\|2125231_2125651_+\|hypothetical-protein	gnl\|CDD\|350335	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 toxin of the VapBC toxin/antitoxin (TA) system. This family belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. M. tuberculosis VapC4 interacts with, and cleaves tRNA44Cys-GCA. M. tuberculosis VapC5 has endonucleolytic activity with RNA, this activity is low with dsRNA, and no activity has been demonstrated on dsDNA. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	0.00597371
NZ_CP007139.1\|WP_025226073.1\|2132404_2132734_+\|cyclic-di-AMP-receptor	gnl\|CDD\|283747	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor. CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.	1.89639e-40
NZ_CP007139.1\|WP_025226074.1\|2131118_2132366_+\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP007139.1\|WP_025226067.1\|2139347_2139671_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	4.84247e-20
NZ_CP007139.1\|WP_038472940.1\|2136677_2138147_-\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	1.03273e-93
NZ_CP007139.1\|WP_144241358.1\|2138233_2138830_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	8.71769e-115

>NZ_CP007139.1|WP_025226070.1|2135826_2136516_+|response-regulator-transcription-factor
MDARLLVVDDDRFLLENVARLLQSQGYEVATASSGEEGLRAVERQIPDMAVLDVSLPDFDGITLCRRLRAIHRFPILMLTARSEAMDKVIGLEVGADDYLTKPFDPSELIARVRAHLRRAQEYASAPATSRKRIGGLEIDHDTREALIDGKPIELTKREFELLAHLAANAGRVLTRESLFERNWGFDIEFSSNSLDVHIYRLRKKIEPDPDHPTYIHTVRGYGYRLEAV
>NZ_CP007139.1|WP_025226071.1|2133718_2135845_+|GAF-domain-containing-protein
MAALETHDDFAFRPLVAGDTESMLRAVLRASEEGMLLTDLEHQSLACNRRFGEIFGVPAEDVVKCGVGELRRRVLPIIADPAAWLASLEDVYNEPRKILHDDLVLKREERVVLRRYSAPVTDPGGQIVGRLWTFRDITEERRQLDVHRVLGEISSFQDPDPNVVCHRILEAVSEFFDGTTAILSIRQGDMMVFRGVVGPKSVLTRITGNRVRDSYCQYAIRDMKPFLVQDAKASGEFTRIRPARAGYTRYLGAPVLDETGSPIGTICLLDGRTNCTLGESDVQLMSLVAMRISSELIRDRFIRERLAEKDEELRRQQDDLVATHSVFEAMNAAFALLAEHPQTDDLLREQTRLLAGLLAYDGAAVLVRRRGSKQFQGYAGTSRPSAFTAESFPAGRDSGVLTDPSLPLLRRLRATHLAYCLRMEEEVGEILIALGRTGPPPQDERHRVHVEALADQVCLLLSTHVLQNELLRANAELGDAHNELLRKEKLSVAGTLAASTAHDIRNITASLALLTAPDACDPTVAIASVREQLARFNVLALRLLSYTKPRLLEPRPVELESVISGVLSLTSAQLRVGRVRAETRIAKGVPSVSGDPHQLEHLFVNLILNAVQAMDATGGGTLTISVVRVAESVRIRFADDGPGIPRDSLEGLFEPFRSTRANGFGLGLYSCRRIAEAHGGTISAARNPVRGSTFTVMLPIGGSWTPAS
>NZ_CP007139.1|WP_084179013.1|2132708_2133692_+|AAA-family-ATPase
MSSSFIGSKSLTTSTQLEPLLGLTSAKRVVRELITGQSGVHSVLLYGAPGSGKNVLAELLAQAWLCQQPGPEGADGICRACGAFERNTNADFLRIEPQGPSRIIPVKAITESSADAEANIPVISFFRTLPLLSRHKVVMIESADRMNNAASNALLKTLEEPYPHAKLILTTDTVGAILPTILSRCLAVACESPAEELLRNAFPDATEEELRMSEGTPGRLRHVIAHRAAYGRLTAFARGLVFRNPGEALVAAEELRLASDALEKSLGCGARAAQAESLEMLAIYLAREPQAPPEWTQYVTEAHRRIVQNGSASIVFDALMAKLFARN
>NZ_CP007139.1|WP_025226073.1|2132404_2132734_+|cyclic-di-AMP-receptor
MKLAVCIVHNRDKGRVTDELVKAGFKFTIIGSTGGFLREGNTTFLIGVEEPELPTLRKVVSDNSQSREQLVNVMPYEAAPPGAFIPNPVKVPVGGAVMFVLDVEQFHRF
>NZ_CP007139.1|WP_025226074.1|2131118_2132366_+|DUF1343-domain-containing-protein
MPTATGLDVLAREGFSRLRGRRLGVLCNQASIDRDYRHLIDLLLPLHRAGELSIVAVFGPQHGLFGHTQDNMIEWEGDTDPRTGLTIHSLYGERRKPTKEMLEGIDLFVVDIPDIGSRYYTFAWTMANCIEASAAVGIPVLVLDRPNPIGGLQVEGLMLRSGFESFVGLYPVPTRHGMTAGEVATFVQRRLRPEPTLEVVKATGWTRSDYLEDADLPWAMPSPNMPTVDTAVVYPGGCLLEGTNLSEGRGTTRPFEIVGAPFLKGWPLAESLNRLALGGVHFRPVQFQPTFNKHAGRECEGVFVHVTDRRSFEPVITYIALLQEIVRQTGMHRLPVHTETAKSFVAASPECDLPGFAWKLPPYEYEFDRMPIDILAGDTWVREAIEGLSPLSEIRSRCLHECAEFAPERNSCLLY
>NZ_CP007139.1|WP_025226075.1|2130849_2131068_+|hypothetical-protein
MVRTTEMLLRCPDIHTQEDEMIIGQTLANSPGIGLVEVDYRTGEVHAVTANQDGGVDLIQRLSDAGYPPIAS
>NZ_CP007139.1|WP_025226076.1|2128221_2130780_-|hypothetical-protein
MIAGLAFLILGFPNDPTATRHASDAVPLIDQMRPVSRISRDGFTLQYWTQVPCETQVEIRRGDLPRVAYGHKPDGTATIKKGNPLKTSWHRIELHDLEPGKRYFYRLWDPGAVPTATETAWGAGEGWRREFAVSTQAQKGWKTIVRIPVKVLLMPNVVNVESAYVDPEVPAPPPAKLTKEEIDKIKSEYAVSARELWVSSGMRLWIDYQIVVDDRLQRWGPEPAMAQDTYKGLPVCRSYPGKDFEAPGGGTWTFVDMKDPMRVVTTPFVEERPYSGQIEQAFPRKWNQRTKKWDFYNSGGGTFGVDGFPQGIPGRSQFLGGGDTAWLATHEFHHDLESHGEFSLSNREDDRIVFDHPTPRRRVIHSDGSVEEVTWTTNGRHGEHWDLIAYWDRLITDAQWLRMYFGYTETVRDADEDGFPDDDPRLPLDEKRFGTLKNKKQTDGHTGDLAKAMLSNWIPGPLQSTWIKPPFQSVRPDPATPDADGDGLLDVDDPYPLFPNAPFISVLSPKIDGDPEEWKNVPEAGSFSRGGIRFVFKQAHDEFGYYGLYEVHGPWSRIDGTFDGEGEGVYSGKGVLGFQTLSNATAPGAASPAGPLVETRPSFGGAPGLKIGAKRTADDGMTIEFRLPNRGEGPWYWTRGGQEIGVAINVWDRENRGYSLWEPYHLFYARMLEPYGREELPSNPPPRLVVGPGVQVIKPGDASLKLEGGWRVEDGAWRHTGDESPLYLANLKVTDFDLAAIVEAKSDVILGGFTKANKLNAAEGYIGFVGGYSNTVTRLRIFGNERGDSNLVMTPGRHEVQLTRRGGELWLLVDGKPAVYATDPNPKAVLDRLGLLGGYGGDQKVYEIRIKV
>NZ_CP007139.1|WP_025226077.1|2125684_2128003_+|prolyl-oligopeptidase-family-serine-peptidase
MIHALIGFTFRQAPIEIREGLVIGGVAAPGRVPVVQDAIVAKLVRGEPVLPTAGDSLTTPRGSTVLWKGAKAGSGGRFESPELGGSGYLFTSVDMPDDRTMILEASGHNLVYVNGVPRAGDPYGYGYLRLPVRLHKGANSLLFSVGRGWMRARLVPTTGPYRLETADLTLPDVIPSDTGNLMGGVVVMNASPSDATDLSISCSSAGKTVTTKLPRIPALSVRKVRFDFPASAKDLDLMLTKNGVPFHSAMVGIRRRTAGQTYKRTFISAIDGSVQYYAVNPSTKPDPSNALILSLHGASVEAIGQADAYSPKAWATLVAPTNRRPYGFDWEEWGRMDAMEVLGVAGARIPHDPKRVVVTGHSMGGHGTWSVGSLYPSRFGAVAPSAGWVSFWSYGGGWEPREATLPEAMLRRAMSPSDTLARITNLAAQKVYVLHGDADDNVPVGQARTMKRALANLGIEFGYHEEPGAGHWWGSQCVDYPELMATLEAARISDFATVDFTTPDPAVSANCGWITVLQQISPRMVSRVRGDTGGLTTENVRSIRFEQALPSLTLDGQKFSNLSAKAVLVKTGSNWAAGQVPATARHLGFSGPLKQAFRDRFVLVYGTSGSAEENEWSRNKARFEAESFYYRGNGSPEVVSDAEFLKGDYAGRNAAVYGNSTTNLAWAALLGKSPIRLGRGALNVGEKKISADGSAVAFLYPSERRLVAAIGGADLAGMRLTDRLPVFGSGTAFPDWMVLSPEAAEKGTKGILAAGFFGPDWGLASGEAAWRE
>NZ_CP007139.1|WP_025226078.1|2125231_2125651_+|hypothetical-protein
MPEMVTSDLPIYLWDLELAVHYIYRDETYARFRPKAQAGLPHLSVFTYAEALCILGRRAETRNKLQEFAAELKDQFTVLGVDEHDAEMLAELNSRVRADGVNRGRLHFWNAALSLTRGYKILTIIKDPYVGLLGPANFA
>NZ_CP007139.1|WP_025226079.1|2125030_2125222_+|hypothetical-protein
MEKKSPVAELVLRSEVPQDNILSQRQPGLLRDFDSELSALARRVLGDDVDALFRDMELRNDVK
>NZ_CP007139.1|WP_038472940.1|2136677_2138147_-|D-aminoacylase
MILAAYLALAITRSGIVIRGGTVYDGTGRPPFAADVRIEGDKIVGVGTIRPQKGDRIIDATGLAVAPGFIDAHSHADGGILEDPNAETQIRQGITTAVVGEDGGSALPVSKFFTQLEQHPASINFASFTGQGTIRQAVLGNDQRKPTAAELKRMKELVDQDMRAGALGLSTGLEYEPNRYADTAEIVELTKVAARHHGIYISHVRNEDNQAFEAFRELIEVARQAHIPAEINHIKLCSTRVWGREPEVGRMMEAARKEGLDITADVYPYTYWQSTIRVIIPTEEFGNRALWEQGLKDVGGPSHVLLTGYSPDPTWAGKTIAELADKTGKDPITLIQEIIERCYGKGNKGEESVVVTAMSEEDITNFIRDPHIMFCSDGGLHGTHPRGAGSFPRILGVYARERKVISMTEAIRKMTSLPAKRFGFRDRGVIASGKTADITLFDPKTVVDTATTKEPEAKPIGIPTVIVRGVVVLENGDPTGAHPGRAWRK
>NZ_CP007139.1|WP_144241358.1|2138233_2138830_-|ATP-dependent-Clp-protease-proteolytic-subunit
MPIGGSVVPMVVERSPQGERAYDIYSRLLKDRIVFIGDEVSDGMANLVIAQMLFLEKEDPNADIDVYINSPGGSVSAGLAMFDVMRHVKCPVATTCVGMAASIATLLLAGGTKGKRYAMPNTRIMIHQTSGGYRGTFSDARIYLEEMQRLFEKYVEILAQCTGKPADQIRQDCDRDFWMSADDAKSYGLVDSIIDPKK
>NZ_CP007139.1|WP_025226068.1|2138829_2139351_-|SRPBCC-domain-containing-protein
MNEKLTFEAFYPHPPSRVWEALTDAKALAHWLMPTDFQPRIGFRFSLEGHTRGSKAKVKGEVIELEVAKLLRYTWDDGEAGSPSVVTWNLQPQDGGTLVRLEHASTIEVQPYVLIEANLNWRYAMYASLPVLLTLLREGRFRPPVPMVYCPDEPEAETGRRAGFRQEPEVVAR
>NZ_CP007139.1|WP_025226067.1|2139347_2139671_-|helix-turn-helix-transcriptional-regulator
MTGQAAPSDVFGAISAPSRRDMLRMLARREMPVMELAESFDMTLSAVSQHLGVLRDAGLVSLRKEGRQRMYRLNPEPLRAVAEWLEFYEPFWNDRLHQLGQYLEENP
>NZ_CP007139.1|WP_025226066.1|2139812_2140298_+|transglycosylase-SLT-domain-containing-protein
MGRSAELSHAKQTGIFDILKTSAAAHDLPLAYVLAVASRESDIENVLGDHGFAVGVMQVDIRFHDIAKKAKETGSWKTDPSKVIDYGINLLAHNYHWAKTTFPDYGGANGHGWLKIAASAYNAGEGGAKKGTLKGDSDLYTTGHNYGKDVLSRMAVFQDLI
>NZ_CP007139.1|WP_025226065.1|2140473_2141205_-|amino-acid-ABC-transporter-ATP-binding-protein
MSVLTIKDLHKSFGSNEVLKGIDLKVGEGDVVALIGASGSGKSTLLRCVNRLEAPTSGGVTFRGDPVTPENVNAIRRQIGMVFQRFNLFPHLTALGNITLAPRKVLKRSEEEVAAEGRALLKQVKLEAKEEAYPGELSGGQQQRVAIARALALKPAIMLFDEPTSALDPELVGEVLEVMRDLAKSGMTMIVATHEIAFARDVATRVLFLDNGLILEDGPPEQVLVNPREPRTREFLARVLSKT
>NZ_CP007139.1|WP_025226064.1|2141201_2142779_-|ABC-transporter-substrate-binding-protein/permease
MQVRAWIRFLLLVVGMTASGVLHAQGIIDTIRSRGELVIATDATYPPFEYKKDGQIIGFDVDVATELARDLGVKLRWIDSEWAGVLGALESGKADLVMAGVTITEERKTKGYLFSRPYFLSGQVIARRKGDTRIQKPEDLKDKIVSVQQETTGQFAVQKIGVPKDHMLKFDQIQDGLLDLRNKKSDACVGDLPTIKAILSKGYPEIELAGPVFVKENLGIVAWKTHPELIAQVNRSLDRMMAGGAYARSYPQWFEEPYDTALVAALDKVKDQGSPVPAALEAATAHPIGTVQSVGGSAFTFRWDLLKDALPILARGAVLTLELTALSLVFGVVGGLLLALARVSPFVLFRPFAVAYVEVVRGTPLLMQIYVIYFVLPAIGIGLSPFVAGVLALSLNAAAYTSEIFRAGIESIDSGQMEAARSLGMDYPTAMRWVILPQTLRRVLPPLTNEAVALLKDSSLVSVVALSELMRAGKEIATNSGSPTTVYLTVAVFYLVMTLPLTWLVRRLEQKWQPISRPRAKKVAV
>NZ_CP007139.1|WP_144241083.1|2142868_2143018_+|lmo0937-family-membrane-protein
MLIFLAVLFLVLWALGFLAFHVSMWFIHLLLLVALISLIMHFLRGPARV
>NZ_CP007139.1|WP_025226063.1|2143074_2143428_-|hypothetical-protein
MKWFAFIAVLSMTAIPFAGSQPRQEKGGPSVATLSPEDRQKFEALKALMAGAQRVPVRWRYRVIDLNVSRLKPAQLEAVLDERAGQYGFELVGTTASNERGKTRFLFKAKVASAPSR
>NZ_CP007139.1|WP_025226062.1|2143475_2144741_+|ABC-transporter-substrate-binding-protein
MFKLSALRCVLLGVSGYVLIGCGGSSGNNPGTTPVPTANELRIGGLFSLTGNWNTLGKASKAAVELARDDVNAYFASRSIATRVTLFVTDTKLLPETAAADLNSLVDKQVRYVVGPQSSSEVARLKATADSSGTLLISQGSTASSLSIADDNVFRMVPDDVREAKALVALARADGIQALIPVARDDAGNGGLFTSVSARFSDVGGEVAAGIRYGANETDFTATLNSVRAAIVALRATHTDAQIGVYLAGFDEDAQILALAQADPTLSAVKWYGSDGVVSSAALSSNAGSAAFMSQHGFPNPIFGLDDSAVGTWSPVAQRIKAKSGVDPDAFALSAYDAVWLAALSYQAAGGSAATATDRRNSLFATASTYTGVTGPTKFDASGDRNDGNFDFWSVGGSAGSYRWMRVASYKAADGSIVRIP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007139_1	1.1\|919847\|33\|NZ_CP007139\|CRISPRCasFinder	919847-919879	33	CP000621	Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence	82719-82751	8	0.758
NZ_CP007139_1	1.1\|919847\|33\|NZ_CP007139\|CRISPRCasFinder	919847-919879	33	NZ_AP015032	Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence	93865-93897	9	0.727

1. spacer 1.1|919847|33|NZ_CP007139|CRISPRCasFinder matches to CP000621 (Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence) position: , mismatch: 8, identity: 0.758

ggagggtgctggtgtcctcaggcggaggaacgc	CRISPR spacer
agagggcgcgggtgtcctcaggcggccgcctgc	Protospacer
.*****.** ***************  *  .**

2. spacer 1.1|919847|33|NZ_CP007139|CRISPRCasFinder matches to NZ_AP015032 (Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence) position: , mismatch: 9, identity: 0.727

ggagggtgctggtgtcctcaggcggaggaacgc	CRISPR spacer
ggagggtgctggtgtcctggggcgcgcgcatca	Protospacer
****************** .**** . * *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage