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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP036544 Bacteroides fragilis strain DCMOUH0018B plasmid pBFO18_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP036543 Bacteroides fragilis strain DCMOUH0018B plasmid pBFO18_1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP036542 Bacteroides fragilis strain DCMOUH0018B chromosome, complete genome 3 crisprs PrimPol,RT,DEDDh,PD-DExK,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,csa3,WYL 0 6 5 2
NZ_CP036545 Bacteroides fragilis strain DCMOUH0018B plasmid pBFO18_3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP036542
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036542_1 1762972-1763117 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036542_2 2313742-2313869 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036542_3 3409741-3410268 TypeIII NA
7 spacers
cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP036542_3 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410131-3410162 32 AJ842011 Bacteriophage 11b complete genome 139-170 6 0.812
NZ_CP036542_3 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410131-3410162 32 NC_006356 Flavobacterium phage 11b, complete genome 139-170 6 0.812
NZ_CP036542_3 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410062-3410094 33 NZ_CP012385 Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence 70571-70603 7 0.788
NZ_CP036542_3 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410062-3410094 33 NZ_CP012367 Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence 27880-27912 7 0.788
NZ_CP036542_3 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410062-3410094 33 NC_013533 Enterococcus faecalis plasmid pBEE99, complete sequence 61405-61437 7 0.788
NZ_CP036542_3 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410062-3410094 33 NZ_CP016847 Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-3, complete sequence 43531-43563 7 0.788
NZ_CP036542_3 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410062-3410094 33 NZ_CP042840 Enterococcus sp. DA9 plasmid unnamed4 83801-83833 7 0.788
NZ_CP036542_3 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410131-3410162 32 NC_011366 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence 74485-74516 7 0.781
NZ_CP036542_3 3.2|3409851|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3409851-3409885 35 NZ_CP014690 Gluconobacter albidus strain TMW2.1191 plasmid pGS1191_1, complete sequence 19606-19640 8 0.771
NZ_CP036542_3 3.3|3409922|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3409922-3409956 35 NZ_CP017832 Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence 106612-106646 8 0.771
NZ_CP036542_3 3.2|3409851|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3409851-3409885 35 NZ_MF564290 Pseudomonas putida strain KSS435 plasmid pVIM_Pse-KSS435, complete sequence 12328-12362 9 0.743
NZ_CP036542_3 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3410131-3410162 32 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 284147-284178 9 0.719
NZ_CP036542_3 3.4|3409993|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT 3409993-3410025 33 MH517022 Acinetobacter phage SH-Ab 15599, complete genome 17020-17052 10 0.697
NZ_CP036542_1 1.1|1762999|34|NZ_CP036542|PILER-CR 1762999-1763032 34 NZ_CP028722 Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence 48603-48636 11 0.676
NZ_CP036542_1 1.1|1762999|34|NZ_CP036542|PILER-CR 1762999-1763032 34 NC_023559 Oenococcus phage phi9805, complete genome 36716-36749 12 0.647

1. spacer 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to AJ842011 (Bacteriophage 11b complete genome) position: , mismatch: 6, identity: 0.812

aataaaaaacagaaattatggaaagtatcgta	CRISPR spacer
aataaaaaatagaaattatggaatgtaaaatt	Protospacer
*********.************* ***  .* 

2. spacer 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NC_006356 (Flavobacterium phage 11b, complete genome) position: , mismatch: 6, identity: 0.812

aataaaaaacagaaattatggaaagtatcgta	CRISPR spacer
aataaaaaatagaaattatggaatgtaaaatt	Protospacer
*********.************* ***  .* 

3. spacer 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012385 (Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.788

ttcaagccgtaggtaaagattacactatggaaa	CRISPR spacer
ttaaattagtaggtaaagattactctaaggaac	Protospacer
** ** . *************** *** **** 

4. spacer 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012367 (Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.788

ttcaagccgtaggtaaagattacactatggaaa	CRISPR spacer
ttaaattagtaggtaaagattactctaaggaac	Protospacer
** ** . *************** *** **** 

5. spacer 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NC_013533 (Enterococcus faecalis plasmid pBEE99, complete sequence) position: , mismatch: 7, identity: 0.788

ttcaagccgtaggtaaagattacactatggaaa	CRISPR spacer
ttaaattagtaggtaaagattactctaaggaac	Protospacer
** ** . *************** *** **** 

6. spacer 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016847 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-3, complete sequence) position: , mismatch: 7, identity: 0.788

ttcaagccgtaggtaaagattacactatggaaa	CRISPR spacer
ttaaattagtaggtaaagattactctaaggaac	Protospacer
** ** . *************** *** **** 

7. spacer 3.5|3410062|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042840 (Enterococcus sp. DA9 plasmid unnamed4) position: , mismatch: 7, identity: 0.788

ttcaagccgtaggtaaagattacactatggaaa	CRISPR spacer
ttaaattagtaggtaaagattactctaaggaac	Protospacer
** ** . *************** *** **** 

8. spacer 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

aataaaaaacagaaattatggaaagtatcgta	CRISPR spacer
agtgaaaaacagaaattatgaaaagaatttca	Protospacer
*.*.****************.**** **. .*

9. spacer 3.2|3409851|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014690 (Gluconobacter albidus strain TMW2.1191 plasmid pGS1191_1, complete sequence) position: , mismatch: 8, identity: 0.771

gaatctgaaaatgcaattttttccgcccaaaatgc	CRISPR spacer
aaatgtgaaaatgcaatgttttccgcgactaatgg	Protospacer
.*** ************ ********    **** 

10. spacer 3.3|3409922|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 8, identity: 0.771

ttaaaaagaaatctttgtttgaaagaaactaaaaa	CRISPR spacer
aaagcatgtaatcttagtctgaaagaaactaaaaa	Protospacer
  *. * * ****** **.****************

11. spacer 3.2|3409851|35|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF564290 (Pseudomonas putida strain KSS435 plasmid pVIM_Pse-KSS435, complete sequence) position: , mismatch: 9, identity: 0.743

gaatctgaaaatgcaattttttccgcccaaaatgc	CRISPR spacer
aaagagaaaaatgcgattttttccgcctaaaactc	Protospacer
.**   .*******.************.****. *

12. spacer 3.6|3410131|32|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

aataaaaaacagaaattatggaaagtatcgta	CRISPR spacer
cataaaaaacagatattatggaaataggagat	Protospacer
 ************ **********  .  *  

13. spacer 3.4|3409993|33|NZ_CP036542|PILER-CR,CRISPRCasFinder,CRT matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 10, identity: 0.697

gaatacaaaactgatgggattaaaccccattac	CRISPR spacer
gaatacaatactgatggcattaaagatttcttt	Protospacer
******** ******** ******  .. .* .

14. spacer 1.1|1762999|34|NZ_CP036542|PILER-CR matches to NZ_CP028722 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaatagtaagtatttgtttgataagcaag	CRISPR spacer
aacaaatatagtacgtatttgtttattcgtttta	Protospacer
****** ****** **********. * . .  .

15. spacer 1.1|1762999|34|NZ_CP036542|PILER-CR matches to NC_023559 (Oenococcus phage phi9805, complete genome) position: , mismatch: 12, identity: 0.647

aacaaaaatagtaagtatttgtttgataagcaag	CRISPR spacer
tttaaaattattaagtatttgtttgatttctctc	Protospacer
  .**** ** ****************   .   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2373546 : 2381062 10 Faecalibacterium_phage(33.33%) NA NA
DBSCAN-SWA_2 2384311 : 2411180 39 Riemerella_phage(50.0%) portal,integrase,transposase,tail,terminase attL 2387416:2387434|attR 2413027:2413045
DBSCAN-SWA_3 3222815 : 3230165 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_4 3508553 : 3555922 49 unidentified_phage(28.57%) protease,transposase,integrase attL 3530288:3530302|attR 3556748:3556762
DBSCAN-SWA_5 3960120 : 4009045 57 unidentified_phage(40.0%) transposase,integrase attL 3981100:3981116|attR 4019196:4019212
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP036542.1|WP_008654998.1|2659198_2659624_+|hypothetical-protein 2659198_2659624_+ 141 aa aa 40 NA NA No NA
NZ_CP036542.1|WP_004291533.1|4347313_4347730_+|hypothetical-protein 4347313_4347730_+ 138 aa aa 40 NA NA No NA