CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008890	Dermacoccus nishinomiyaensis strain M25 plasmid unnamed, complete sequence	0 crisprs	c2c9_V-U4	0	0	0	0
NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	6 crisprs	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	0	8	1	0

1. NZ_CP008889

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008889_1

• CRISPR_ID: NZ_CP008889_1
• CRISPR_location: 520320-520446
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP008889_1

Consensus_repeat	Method
GAGCGCGCGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTC	CRISPRCasFinder

spacers of NZ_CP008889_1

>1.1|520367|33|NZ_CP008889|CRISPRCasFinder
AACAACTCGCCCGGGCCGCCACAAGAGCGAAGT

CRISPR arrays and Neighbor proteins around NZ_CP008889_1

CRISPR arrays

The CRISPR arrays of NZ_CP008889_1

>merge|NZ_CP008889|1|520320-520446|CRISPRCasFinder
GAGCGCGCGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTCAACAACTCGCCCGGGCCGCCACAAGAGCGAAGTGAGCGCACGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTC

>NZ_CP008889|1|1|520320-520446|CRISPRCasFinder
GAGCGCGCGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTC	AACAACTCGCCCGGGCCGCCACAAGAGCGAAGT
GAGCGCACGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_038566760.1|522440_522971_-|GtrA-family-protein	unknown	unknown	gnl|CDD|377229
NZ_CP008889.1|WP_165583802.1|514397_515075_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP008889.1|WP_006946709.1|517992_518196_+|cold-shock-protein	unknown	unknown	gnl|CDD|224197
NZ_CP008889.1|WP_038566773.1|531141_531945_+|ParA-family-protein	unknown	unknown	gnl|CDD|224113
NZ_CP008889.1|WP_006946717.1|528390_528528_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_167539864.1|524629_525334_-|response-regulator	unknown	unknown	gnl|CDD|223816
NZ_CP008889.1|WP_150112708.1|525714_526134_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_006946713.1|526345_528073_-|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl|CDD|223651
NZ_CP008889.1|WP_081873563.1|520539_522033_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224983
NZ_CP008889.1|WP_167539823.1|518366_519785_-|LCP-family-protein	unknown	unknown	gnl|CDD|224235
NZ_CP008889.1|WP_006946739.1|516729_517695_+|DMT-family-transporter	unknown	unknown	unknown
NZ_CP008889.1|WP_038570215.1|529506_531024_+|glycerol-kinase-GlpK	unknown	unknown	gnl|CDD|234594
NZ_CP008889.1|WP_038566749.1|510198_511680_+|phytoene-desaturase	unknown	unknown	gnl|CDD|274273
NZ_CP008889.1|WP_038566753.1|512593_514294_-|FAD-binding-oxidoreductase	unknown	unknown	gnl|CDD|223354
NZ_CP008889.1|WP_051805579.1|508218_509427_+|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|173833
NZ_CP008889.1|WP_038566755.1|515082_516645_+|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl|CDD|223651
NZ_CP008889.1|WP_038566763.1|522967_524476_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|274368
NZ_CP008889.1|WP_038566751.1|511700_512597_-|lipid-kinase	unknown	unknown	gnl|CDD|224513
NZ_CP008889.1|WP_038566770.1|528722_529448_+|aquaporin-family-protein	unknown	unknown	gnl|CDD|223653
NZ_CP008889.1|WP_081873785.1|509497_510202_+|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl|CDD|235156

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_038566760.1|522440_522971_-|GtrA-family-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	7.48091e-14
NZ_CP008889.1|WP_165583802.1|514397_515075_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.64865e-05
NZ_CP008889.1|WP_006946709.1|517992_518196_+|cold-shock-protein	gnl|CDD|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.8714e-37
NZ_CP008889.1|WP_038566773.1|531141_531945_+|ParA-family-protein	gnl|CDD|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.46663e-39
NZ_CP008889.1|WP_038570215.1|529506_531024_+|glycerol-kinase-GlpK	gnl|CDD|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP008889.1|WP_167539864.1|524629_525334_-|response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.15591e-85
NZ_CP008889.1|WP_006946713.1|526345_528073_-|glycerol-3-phosphate-dehydrogenase/oxidase	gnl|CDD|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.18886e-172
NZ_CP008889.1|WP_081873563.1|520539_522033_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.42175e-105
NZ_CP008889.1|WP_167539823.1|518366_519785_-|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.73669e-29
NZ_CP008889.1|WP_038566749.1|510198_511680_+|phytoene-desaturase	gnl|CDD|274273	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.14933e-152
NZ_CP008889.1|WP_038566753.1|512593_514294_-|FAD-binding-oxidoreductase	gnl|CDD|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.62829e-66
NZ_CP008889.1|WP_051805579.1|508218_509427_+|polyprenyl-synthetase-family-protein	gnl|CDD|173833	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya.	2.49106e-54
NZ_CP008889.1|WP_038566755.1|515082_516645_+|glycerol-3-phosphate-dehydrogenase/oxidase	gnl|CDD|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	4.71653e-110
NZ_CP008889.1|WP_038566763.1|522967_524476_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	2.27099e-62
NZ_CP008889.1|WP_038566751.1|511700_512597_-|lipid-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.41631e-49
NZ_CP008889.1|WP_038566770.1|528722_529448_+|aquaporin-family-protein	gnl|CDD|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.30728e-59
NZ_CP008889.1|WP_081873785.1|509497_510202_+|isopentenyl-diphosphate-Delta-isomerase	gnl|CDD|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	1.04668e-85

Protein sequences

>NZ_CP008889.1|WP_167539823.1|518366_519785_-|LCP-family-protein
MTFLSTLVPGLGLMWTKRRTVGVILLLIAVIAGIALSIFLLSGNVLTGAANVLTSTGLKLALVALAAALVLWLTSIVLTARTTHTDGWSHRGDILFKAFTALMCLAVTMPLARAVSTVTVTQDAFGTMFIENGKGAASTKENAFKKKARVNLMLVGSDAGSDRTGIRTDSLMVASIDTHTGDTTLISIPRNWNYVPFPESNPLHKLYPNGFHCPERGAGDPCWMDAVWSEADTQHPELFPGEQYAGLNATRDVVQEIIGMPIDYSTVINLKGFQDLVDAMGGVDMTIPPGGIAIGGKIEGGAIVPGSITGRIPEGRQHLNGQQALWYSRSRVETGDGDRMRRQRCMVNALIDQTNPISLVNQFPSIMKVAKENILLDLPQSELPDLADLANTMKKGQTKSVNLAYPVISDSHPDYDKVRALIKKGMDRSTPAPKPKSSSSASSSTAPNSSSSSASTSSSSSDQAIDDTTATC
>NZ_CP008889.1|WP_006946709.1|517992_518196_+|cold-shock-protein
MAQGTVKWFNAEKGFGFIEQDGGGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGDKGPQASNVTAA
>NZ_CP008889.1|WP_006946739.1|516729_517695_+|DMT-family-transporter
MLLVLLLAVASSACAALSTVFKHRAAQHAVEQPAVDERADGEKLPRRGLRAAAVAWVANPTFAIAMVFDGLCVVFQILALKYGSLSVVQPVLCMSLVISLGLNHVMLRTRPTRSEILHSLTLVAGLVMFLLVSDAISAHGETAIGRRVPAIILAVVGGLFVLGAVFGTRSMRPRMRARALAASVAIVYATTAGLMKSTTQISHLFGLDAVLTSWQLWVLIALAACGLALNQVAFAAAPLNVVLPVVASLDPLFSVLIGVGVYGDQLRDTPLAVAGEVAGLALLLYSVVKLSSVRAAQGAAAEAELAAAMDGGATPLSMRNE
>NZ_CP008889.1|WP_038566755.1|515082_516645_+|glycerol-3-phosphate-dehydrogenase/oxidase
MGSLNPTQRAAALHRLAHERYDVIVVGAGVTGVGVALDAASRGLRTALVERVDLAAGTSRWSSKLIHGGLRYLAKGDLAAAYESARERHHLMTSIAPHLVRPLHTVVLDTGIGEAAVSNLGITLSDGLRRVSRTPSNVLAAPRRIRVRDVESLVPGAVRGRAALRYTDGQLEDDARFVTTLARTAAAHGADVVTRCAARPLDSESVELTDELTGESFVAHGHIVLATGVWSGEHDERLTVTPSRGSHLVVRASAVGNPSAQLVAPVPGHFGRYVFAIPIVDGLVLIGLTDEADPDADPLAPSVPDEDEEFLLATMNAVLARPLTRDDVVGRFAGLRPLVTRADASSGQGATADASRKHLLLDEPGAPITITGGKFTTYRRMAQDAVDAVARRVGGVVASCRTRELPLLGAAPTDVLARVAAPERLVRRYGTLAPSVAAIADESSFYAERVVPGSSTLVAEFVHAVRHEGAMTLDDLVERRTRLAFVDADLEPARAVAAEVLRREMGLDTFRELPVAHHRA
>NZ_CP008889.1|WP_165583802.1|514397_515075_+|helix-turn-helix-transcriptional-regulator
MTQDDAMLAAVRAEVIAYGFRRATMTSVARRAGMSRATLYRRGATLDDLVREALVADFAAAASDALPQVPSNETASEPADGEAGAVTRDVIVRAAITTLEALSTEFTQALIEHDPELLLPYLVERVGRSQRSILDALSAAIALAQLDGSVRDAPADVLAMGAMQALMPYLVSRRPLEQIAPRQVWLAEAAHLLDGYLAPSPAASDHRTTPRKAAPDVDHPRPPRQ
>NZ_CP008889.1|WP_038566753.1|512593_514294_-|FAD-binding-oxidoreductase
MKDDANLVETAPRSVWHGWGDPQLKKELSPLVWRGLKLAKGIEPAEQDTPPVALDDVELPASTLDDDGLAALRTLVGDAYVSVERRERIEHAGGKSYPDLYRLRTGDGSHAPDAVAFPADGSEVVEVLRLAAQREIAVVPFGGGTSVVGGVDPVRGRFASVISLDLRRLDAVVSIDETSRTATLQPGLRGAQLEAVLRPRGLTLGHFPQSYEQATLGGYLVTRSSGQASSGYGRFEQNVVAVTLATPEGELTLGGRTPSSATAAGPKLIDVLIGSEGTLGVITEMTLQLHEGPTEFAYETWAFDSFTDGFDAFRALAQDLGHGVMPDVSRLSDGEESRTILAQSARGLAAMATFAARGAREPSLGVLRWEDTDRTTLRRRRRQAHRVLRTAGARRAPASIAEHWISHRFRGPYQRDHLMDRGIFVETLETATTWANLPTLYSAVRDAISAEVGPHAVVQCHVSHLYDGGASLYYTFFCREESDPLAQWRRVKTAASDVIAAHGGTITHHHAVGTDHRAWAADEMGELGARILRAVKNELDPAGILNPGKLVPPVDDAPDACEAGAS
>NZ_CP008889.1|WP_038566751.1|511700_512597_-|lipid-kinase
MTRPVTLVVNPAARKGATLRMIDPVTDILRAHGWRVDVVVTRSADHASQVAADANVDDLLVTLGGDGLYGRVAAGAVVSGCLMAPLPAGRGHDLVRALGGPGDMRRAAQLLAVARERRLDVGLAGDGDPSTATVFLGVATLGYDSMANTYANDAPRAVPSSLVYAYGGARTLVHARPRPLTLVVDGVTHEFTGWNVAIGNSGRFGAGMRVNPDASMSDGLLDVTVVTDIPRWHYPAMLPRLFRGTHVDGVRVRALRGREIRVITPHVGDVYADGDLLEASPTTFRALPDALRVLVPAP
>NZ_CP008889.1|WP_038566749.1|510198_511680_+|phytoene-desaturase
MSRIVVIGAGLAGLAAACHLRGAGHDVVIVEKQAQAGGRGIRLERDGFTFDTGPTVLTMIDLVDEALAQIGVGVHDVLDLTLLDPAYRACYADGSTIFVRHGHEAMREEIARECGAKDAAAFDDFVAWLRRLYEVEMPHFIDANFDSPLDLLRNPAAAARLVRLGGFRRLGPVIRERFDDERLHRIFSFQAMYAGLAPEKALALYAVITYMDSIEGVWFPAGGMREVPEAMARALGRTGVEQRYDTTVTRILTRADGVVAGVETSGPSGDERLPCDAIVCTTDLPIAYRTLLDDLEPPAVLKRATYSPSAVVWHLGVEGVPSDAAHHNIHFGTAWEESFDDLLVRGTRMQDPSRLVTIPSRDDATAAPEGCSTLYVLEPAPNLDVGRVDWAAERPRMKEELLAFLDDAGYPTTIVTDEFVDPTDWQAQGMAAGTPFALSHTFLQTGPFRPPNVERRRPGVFFAGSGTVPGVGVPMVLVSGKLAAARVEAYVGR
>NZ_CP008889.1|WP_081873785.1|509497_510202_+|isopentenyl-diphosphate-Delta-isomerase
MIDAPGKPAEATFGAAPAAPTTGVPAATDDVVVLLDDDGAAIGTCPRAEVHTHDTPLHRAFSSYLFDDAGRLLLTRRALTKVAWPGVWTNTCCGHPRPDEPTQDAVSRRVREELGLDVTQLRVVLPSYRYRAVDASGIVEHEICPVLVGRIDPAQLAPHPDEVCEWAWIAWPDAVHLARRTPALLSPWAAEQIVLLAEQLGENGLLTLAPQHDQTAHEHTQHEEHEPLDGKDLA
>NZ_CP008889.1|WP_051805579.1|508218_509427_+|polyprenyl-synthetase-family-protein
MSGRQNDVAPDAGRSGLEGLGRERRAAGRCDTESRDGGRRSDACRLTDAASFLDAVQARLAESLAFAADAGGVVTAGLPSSALVEASSLETLVRDLLAAGGKLVRPRLVRLGYLAARECTNPDDDPATTDAVVRVAAAFELLHLFGLLQDDVMDASDTRRGTPTAHHQVRAAAAQPDGPDAARLGDSVAVLAGDLAFALANRLVRALPEHVADAWDAAVVELVTGQRLDLVFAAEARLDEVSTRRVAHAKSGAYTVQRPLEIGALLAGESAPPAWLSRFGAALGEAFALADDIIGLWGEPAVTGKPAGEDLRERKPTTVLGLADSALDGELTRRLAPGREPLDEAETHAWLQRLDAAGVRAQAVARIADRHADALDALAALPQGAVRDELTRFADELAVRDA
>NZ_CP008889.1|WP_081873563.1|520539_522033_+|NAD(P)/FAD-dependent-oxidoreductase
MVCSWSEEFVVSVGVQQQVEHVDVVVIGAGLSGVGAACRIQEANPGVDYVVLEARDALGGTWDQFRYPGVRTDSDMYTMSYPFAPWHQEKAIAAGEDILDYIRSTADAFGVSERIRLRHKVVSADWSSADAVWRLRVDTPDGEVETTAGFIHACSGYYSYAEPYAADIPGLAEFAGQVVHPQFWPQDLDVAGRRVVVIGSGATAMTLVPALADLGAEVTMLQRTPTYVLAQPSRDPLAAALAKIPDERLSPQRKHAVMRAKNVAAQWASYQTARRLPRAARAVLRANVRQGAGEEHVDSFTAPYAPWDQRLCIVPNGDLFKAVKHGRARVVTDTIASVEPGGVRTGSGELLETDVIVTATGLAVELLGGASLRIDGEPVDVSQRLVYRGCMLEGVPNAALCVGYINASWSLRGDLSHRFVARMIKHLRDGGYRSATPVPPSGLGRRPLLEMDSGYLRRAADIMPRRSDAAPWTMRQNYLAEAREMRRPDVTTDVVFA
>NZ_CP008889.1|WP_038566760.1|522440_522971_-|GtrA-family-protein
MNPTPGADTARRSTTAPVSTASTSSGSSDESMTASAPGSSRLDALRSPGAAQAMRFAMVGIASTVLYTVLFAVLDTRMNHQIANILALLICTVLNTWVNQRFTFDAAGHERGRDAHLQSLAILVVTLAVTSGALALEHHQWPQASTLWDTVTVTVGNAIATVIRFVVFRRIFAARD
>NZ_CP008889.1|WP_038566763.1|522967_524476_-|HAMP-domain-containing-histidine-kinase
MILNPARWTLRSKLLASIVTLFILVLTLIGAATVLSMRTSLMKQVDQQLIDVERAVGGGPAGTTELGGPADKDSHPRAPGLGGSVLRLTLDASSTPHSLVVDQNYVSSATGTQLTLSQAQIRSLATADLGTTPKTMDFDGSLGRYRVVRVPKPDGDIAFIGLPLAPIDDNIRALAGNIALMGLLGLVTIGGASFLLVRRNLRPLQQVAATAERVSELPLGRGDVRTDERVPVALTDDHTEVGTVGLALNNLLDHVDSALDARHESEMQVRQFVADASHELRTPLASIRGYAELSRREKEPVPVGVTHALGRIESEAGRMTTLVEDLLLLARLDAGRELEREPVDLTRVVVETVSDLHAAGPEHVWHLDLPEDLEDFPEVIGDEARLRQVVINLLANARRHTPAGTTVTAGLARRDDDVLLTVTDDGPGIPPEFMPHLFERFTRGDAARTRTEGSTGLGLSIVDAVVAAHHGTVRVESRPGRTCFTVSLPLEDPRPSSQEDRS
>NZ_CP008889.1|WP_167539864.1|524629_525334_-|response-regulator
MKRPDGSNVRVLVVDDESNLTELLSMALRYEGWDIKTAATGNSAVKTAKEFKPDAVVLDMMLPDFDGLEVLRRMRDEDPTLPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRRSVQLAEEETSLLAVGDLTLDEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVWHYDFGGQANVVELYISYLRKKIDAGREPMIHTMRGAGYVLKPAG
>NZ_CP008889.1|WP_150112708.1|525714_526134_-|hypothetical-protein
MLQHRRQQARQHEQRTQARLHRRLGAPVGETGNLAQAWVRRPLAQHVLRHQLMMRGHRVGEDHGVDERHPIDDLAEEIGRRSHRDRPGGRLGDEQARSAASNTTASECRHRAPCGREMCTRSVDGTGRPCSAAAVTEAA
>NZ_CP008889.1|WP_006946713.1|526345_528073_-|glycerol-3-phosphate-dehydrogenase/oxidase
MTMHPYSAQLGPSSRAESWRELTERELDVLVIGGGVTGAGTALDAVTRGLRTGLVEARDFASGTSSRSSKLFHGGLRYLEQLNFALVAEALKERELMMTRIAPHLVHPVAFLYPLSHRAWERPYVATGIAMYDQMGGARSVPRQKHLTKSGTMKMFPGLKNDAMVGSIRYYDCQADDARHTMTVARTAAQYGAIVRNSTEVVSLITEADRVVGAKIRDVETGETADVRAKVVINCTGVWTDDIQKMTGGKGRFRVRASKGVHILVPRDRIAGEVGLILRTEKSVLFVIPWGQQWLIGTTDTDWALDVAHPAATSKDIDYILEHVNTVLASPLTRDDILGVFAGLRPLLAGESEDTSALSREHAVARPQPGLISIAGGKYTTYRVMAADAVDAAAQDLGPIKESVTEVTPLVGADGYAAMLNLKHEIAAESGLPEWRIEHLLNRYGSKLYDVLALSKDDESLLEPVTNADEYLRCEIAYAVTDEGAMHLEDVLARRTRMSIETKHRGVDAAAEVADIIAPILGWTQEQRDAEVESYTERVAAEVKSQELDTDEASDAARLSAPDPRPQLRKVVATR
>NZ_CP008889.1|WP_006946717.1|528390_528528_+|hypothetical-protein
MEHAITWVLWAVTAVVPFLGLAWCLTSPPAEVRRTPEIAETSPER
>NZ_CP008889.1|WP_038566770.1|528722_529448_+|aquaporin-family-protein
MSLGQVFISELLGTAILVVLGVGVVANVLLPRNGGFGGGPLMINIGWGFAVFAGVFASYKSGAHLNPAVTLGILASGADEYAKGVDISVASTFVYLAAQFIGGFIGAVVVWAAYKKQFDDHEDAPTNVFSTAPAVRAPFWNVVTEVVGTFILVFTILAFTKTPSQAGPLNVAFLVVAIGVSLGGPTGYAINPARDLAPRLAHFVLPIPRKDDSNWGYAWVPVVGPVIGGVLAGLAAHAYIG
>NZ_CP008889.1|WP_038570215.1|529506_531024_+|glycerol-kinase-GlpK
MADKAEKKYVAAIDQGTTSTRCMIFDHDGEVVAVAQMEHQQVFPKAGWVEHDALEIWTNTRKVCAEALAKGDLDSDDIAAVGITNQRETTLVWDKNTGKPVYNAIVWQDTRTDAICKELAGDAGSEKYKDVCGLPLATYFAGPKAKWILDNVDGAREKAEKGDLLFGTMDTWVIWNMTGGPKGGVHVTDVTNASRTMLMNLDTLEWDEDIAKDMGIPMSMLPEIRSSSEVYGKVRHRGILKDVPISGALGDQQAATFGQVCFEPGTAKNTYGTGNFLILNTGEDKVMSKNGLLTTVCYKIGDEKPVYALEGSIAVTGSLVQWLRDNLKLIKDAKEVEKHAKEVDDNGDVYVVPAFSGLFAPHWRSDARGAIVGLTRFANRGHICRAALEAVAFQSQEVVKAMNADSGVDLTELKVDGGMVVNETLMQFQSDLLDVDVIRPKINETTALGAAYAAGLAVGFWKDLDDLRRQWAESKRWEPSMDDAERQRLLKRWGQAVERTLDWAE
>NZ_CP008889.1|WP_038566773.1|531141_531945_+|ParA-family-protein
MFVVSVCSLKGGVGKTSVVLGLAAAARARGLTTLVVDLDPQGDATYALGVDAPGAVSADVLERPKRKVLERAIVPAGWPRGNTDLHVLPSSDATANLDRPDADGEQLHTLRTALGKLDYDLVLIDAPPSLSGLTRSALVASDRAVVVTEAGAFAVNAVTRLFAAIDEIRRTEAGGLQPLGIVLNRYKPSMAEQRAQRAALERAFGPLVLSPTLPDRAVVPKAQGARAPLDAMSGGAAALQGFELLLGRIERASRLTRRSDRRASASA

Crispr_ID: NZ_CP008889_2

• CRISPR_ID: NZ_CP008889_2
• CRISPR_location: 873961-874417
• CRISPR_type: TypeV-U4
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: c2c9_V-U4

Consensus repeat of NZ_CP008889_2

Consensus_repeat	Method
GTCGGCCCCGCGCACGCGGAGATGAGCCCG	PILER-CR

spacers of NZ_CP008889_2

>2.1|873991|31|NZ_CP008889|PILER-CR
ATCACGTTCGCGTCGGAGACCTCGACCACTA
>2.2|874052|31|NZ_CP008889|PILER-CR
ATGTCCGACGAGGTATCTGAGCAGACCGAGC
>2.3|874113|31|NZ_CP008889|PILER-CR
CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
>2.4|874174|31|NZ_CP008889|PILER-CR
CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
>2.5|874235|31|NZ_CP008889|PILER-CR
CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
>2.6|874296|31|NZ_CP008889|PILER-CR
CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
>2.7|874357|31|NZ_CP008889|PILER-CR
CGCGGCGTGCGCTTCGATGGCGCGAGCCACC

CRISPR arrays and Neighbor proteins around NZ_CP008889_2

CRISPR arrays

The CRISPR arrays of NZ_CP008889_2

>merge|NZ_CP008889|2|873961-874417|PILER-CR
GTCAGCCCCGCGCACGCGGAGATGAGCCCGATCACGTTCGCGTCGGAGACCTCGACCACTAGTCAGCCCCGCGCACGCGGAGATGAGCCCCATGTCCGACGAGGTATCTGAGCAGACCGAGCGTCAGCCCCGCGCACGCGGAGATGAGCCCGCGCGGCGTGCGCTTCGATGGCGCGAGCCACCGTCGGCCCCGCGCACGCGGAGATGAGCCCGCGCGGCGTGCGCTTCGATGGCGCGAGCCACCGTCGGCCCCGCGCACGCGGAGATGAGCCCGCGCGGCGTGCGCTTCGATGGCGCGAGCCACCGTCGGCCCCGCGCACGCGGAGATGAGCCCGCGCGGCGTGCGCTTCGATGGCGCGAGCCACCGTCGGCCCCGCGCACGCGGAGATGAGCCCGCGCGGCGTGCGCTTCGATGGCGCGAGCCACCGTCGGCCCCGCGCACGCGGAGATGAGCCCG

>NZ_CP008889|2|1|873961-874417|PILER-CR
GTCAGCCCCGCGCACGCGGAGATGAGCCCG	ATCACGTTCGCGTCGGAGACCTCGACCACTA
GTCAGCCCCGCGCACGCGGAGATGAGCCCC	ATGTCCGACGAGGTATCTGAGCAGACCGAGC
GTCAGCCCCGCGCACGCGGAGATGAGCCCG	CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
GTCGGCCCCGCGCACGCGGAGATGAGCCCG	CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
GTCGGCCCCGCGCACGCGGAGATGAGCCCG	CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
GTCGGCCCCGCGCACGCGGAGATGAGCCCG	CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
GTCGGCCCCGCGCACGCGGAGATGAGCCCG	CGCGGCGTGCGCTTCGATGGCGCGAGCCACC
GTCGGCCCCGCGCACGCGGAGATGAGCCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_150112724.1|884265_884688_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_038570433.1|876418_876895_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|315378
NZ_CP008889.1|WP_167539829.1|881496_882051_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP008889.1|WP_038567186.1|860337_860757_+|PIN-domain-nuclease	unknown	unknown	gnl|CDD|350322
NZ_CP008889.1|WP_038567194.1|872175_872964_+|NAD-dependent-deacylase	unknown	unknown	gnl|CDD|234777
NZ_CP008889.1|WP_051805680.1|861629_862835_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223551
NZ_CP008889.1|WP_038567192.1|869806_870967_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|132248
NZ_CP008889.1|WP_081873595.1|867323_868604_+|amidohydrolase	unknown	unknown	gnl|CDD|349936
NZ_CP008889.1|WP_150112723.1|882218_883364_+|IS30-family-transposase	unknown	unknown	gnl|CDD|225382
NZ_CP008889.1|WP_051805682.1|863546_865139_+|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl|CDD|379601
NZ_CP008889.1|WP_038567189.1|868738_869803_-|hypothetical-protein	unknown	unknown	gnl|CDD|132247
NZ_CP008889.1|WP_038570419.1|862848_863238_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_081873599.1|883748_883988_-|transposase	unknown	unknown	gnl|CDD|222853
NZ_CP008889.1|WP_038567203.1|884974_885238_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_081873597.1|879772_881497_-|AMP-binding-protein	unknown	unknown	gnl|CDD|235531
NZ_CP008889.1|WP_150112722.1|878638_879751_-|hypothetical-protein	unknown	unknown	gnl|CDD|274414
NZ_CP008889.1|WP_051805690.1|876990_877398_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP008889.1|WP_051805684.1|871165_872044_-|siderophore-interacting-protein	unknown	unknown	gnl|CDD|99790
NZ_CP008889.1|WP_051805686.1|873125_873905_+|transposase	c2c9_V-U4	-	gnl|CDD|223747
NZ_CP008889.1|WP_167539828.1|875784_876285_-|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl|CDD|369561

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP008889.1|WP_051805686.1|873125_873905_+|transposase	c2c9_V-U4	-	3.6e-88	291.1	3.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_051805680.1|861629_862835_-|cation:proton-antiporter	gnl|CDD|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.86652e-23
NZ_CP008889.1|WP_167539829.1|881496_882051_-|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.48183e-05
NZ_CP008889.1|WP_038567186.1|860337_860757_+|PIN-domain-nuclease	gnl|CDD|350322	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC3 and VapC21 toxins. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.67102e-44
NZ_CP008889.1|WP_038567194.1|872175_872964_+|NAD-dependent-deacylase	gnl|CDD|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	3.99774e-114
NZ_CP008889.1|WP_038570433.1|876418_876895_-|tetratricopeptide-repeat-protein	gnl|CDD|315378	pfam12688, TPR_5, Tetratrico peptide repeat. BH0479 of Bacillus halodurans is a hypothetical protein which contains a tetratrico peptide repeat (TPR) structural motif. The TPR motif is often involved in mediating protein-protein interactions. This protein is likely to function as a dimer. The first 48 amino acids are not present in the clone construct. This Pfam entry includes tetratricopeptide-like repeats not detected by the pfam00515, pfam07719, pfam07720 and pfam07221 models.	2.0974e-16
NZ_CP008889.1|WP_038567192.1|869806_870967_-|acyl-CoA-dehydrogenase	gnl|CDD|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	5.08471e-134
NZ_CP008889.1|WP_081873595.1|867323_868604_+|amidohydrolase	gnl|CDD|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP008889.1|WP_051805682.1|863546_865139_+|circularly-permuted-type-2-ATP-grasp-protein	gnl|CDD|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	3.2299e-129
NZ_CP008889.1|WP_038567189.1|868738_869803_-|hypothetical-protein	gnl|CDD|132247	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	7.56709e-57
NZ_CP008889.1|WP_150112723.1|882218_883364_+|IS30-family-transposase	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.12706e-69
NZ_CP008889.1|WP_081873599.1|883748_883988_-|transposase	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	0.000116733
NZ_CP008889.1|WP_081873597.1|879772_881497_-|AMP-binding-protein	gnl|CDD|235531	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP008889.1|WP_150112722.1|878638_879751_-|hypothetical-protein	gnl|CDD|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	6.05034e-08
NZ_CP008889.1|WP_051805690.1|876990_877398_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.76606e-13
NZ_CP008889.1|WP_051805684.1|871165_872044_-|siderophore-interacting-protein	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	7.96708e-50
NZ_CP008889.1|WP_051805686.1|873125_873905_+|transposase	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.27831e-20
NZ_CP008889.1|WP_167539828.1|875784_876285_-|alpha/beta-hydrolase-fold-domain-containing-protein	gnl|CDD|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.05304e-19

Protein sequences

>NZ_CP008889.1|WP_051805686.1|873125_873905_+|transposase
MYLPSLPTRRLVDRVGPIPMAWASGGILAASALFAAVVPGDSLAARGQHVTPTTGRIKARARLAREHAAVAQHRASTLHAITKQLATSHAVVAVEDLNVAGMTRSARGTIDKPGRNVAAKAGLNRSILDASFAEMRRQLTYKTSWYRSQLLPSGRFVPTSKTCSTCGAEKANLPRSERVYHCENCATVLDRDVNAAKNVLRAALASHDAPGMEESQNARGVRNETSVALRSAKREDPPRGGPPRPSNRVRSSPPTGKRK
>NZ_CP008889.1|WP_038567194.1|872175_872964_+|NAD-dependent-deacylase
MPTPASEPLDTVLDLARDARDVVVLTGAGMSVESGIPTFRDAQTGLWERHDPEELATIDAWERDPDFVWAWYRWRAKLIRDVQPHVGHRALADWADAERANLWIVTQNIDDLHERAGSSVLAHLHGSIFALRCSECDTPFDEADDAALALTSDPVERLAPPRCPVCGAAVRPGVVWFGEELPHEPFAHAEAALEHADLVLSVGTSGVVQPAAGLPYRPLTRGVPVVEINPAETELSDDATLVWRAPAAAALPALVSALRGEA
>NZ_CP008889.1|WP_051805684.1|871165_872044_-|siderophore-interacting-protein
MPLRTIERGMHAAYSAAASLTMALPPERETWPTTPAEVRAVEALCPAFTRVTLHAEMFRTLELTGPDEYFGLFMPPSGAPVVTPPDDERDPRSAVAAMDDAVRPQLRWYTIRMLRPEHAEIDVDIVDVGHDGPGARWLRDVRVGDVVGVRVQSALYSAAPAGGHHVLVADETGLPGLLAIVDAARERATKEGEFAQDAQPRLTCVVEVPDATYLHPEVADAGITVVQRGTNASGSAAVAALVDLDVDDADYAWVCAEGSAVAAIKRHLTKERGLSRRAITASGFWSVGRPRP
>NZ_CP008889.1|WP_038567192.1|869806_870967_-|acyl-CoA-dehydrogenase
MQRTLRDEDKALQRELRAFAESFPDHIKTGYIADGEVVPELLREGQRILDDADLAAPHWPTEWGGRGWDELQLHIYRSELQRAGVPMPLAFNTSMVGPVIAAFGSQELKERFLPKTKSCEIWWSQGFSEPDAGSDLASLRTTAVREGDEYVVNGQKTWTTLGQFGDWIFTLVRTDPSADKPQKGISFLLIDMSSPGLTVRPIKLIDGRHEVNEVFFDDVRVPADQLVGEENRGWDYAKFLLGNERTSAAPVGSIKAALAAAKEHAKATRSPHGTALDEPLLAARFAQLEAEVMALELTVLRVAGDSRDGRPDPASSILKLRGSQLQQDVYELMVDVAGVDALTWYTGEWSSETLPRYLNYRKASIYSGSNEVQRNIISGGILGLKG
>NZ_CP008889.1|WP_038567189.1|868738_869803_-|hypothetical-protein
MDFTPTEEQRALQSAVRDLASSLTPKDTGSGAPAGPQPFDADAWGKLAEMGLLGLAFAEDKGGFGASAIEVTLAAVELGAARVTLPYADAMAAAAALDAANSPLLADVISGEKLVLTAFGESGATWSPAASARTASGSELAGEARGNTDLSAADAIVTTAGTGDDVEVYLVESPTVDGPKVTLDGAPATRLGGREVLDAALALGNVAQCGEALGAMGAALTLTVEYLKTRKQFGVPIMRFQTLTQRAADMYVGVELTRSAVLYAAMALADPGEGDDALDLDAIVSRTKYLVGTYGRLVGQEAIQLHGGIGMTAEYAVGHYTSRLATIERTFGDTRQHLAALAAGVGDHTSVDVV
>NZ_CP008889.1|WP_081873595.1|867323_868604_+|amidohydrolase
MSDSDKNDANTGGKNSEPDVDAAHEAALAYDGIDDNLRDKLVEWRRHLHTNPELSYEEKATTDYVAEQLDGLGFEVRRFSFGTGLICDVPAADDATADDLVALRADIDALPMDEETDLEFASTNEGASHSCGHDAHTAMLLGAATLLAKNPPPRPVRLIFQPAEEQMPGGAVDCVEDGAIEGVDRIIALHCDPHRVVGDVGVHAGAITSSNAKIEVTLTSDGGHTARPHETGDLIYALASIATGAAQVIDRRIDPRSGTVMTWGSIQAGGSAANVIPSKGTLVGTVRSASRDTWAQLPDVVPPAISGIAELYGVKAEVNYVQGVPPVVNDEACAQLAAQAVTDVLGEDGVGEADQSSGGEDFGWYTEEIPGIYLRLGVWDGDSDETDLHHPAFMLDERALPIGAAVFDRFARLDRDAASDESSNAS
>NZ_CP008889.1|WP_051805682.1|863546_865139_+|circularly-permuted-type-2-ATP-grasp-protein
MNASAPPPAARSSRESSRPSAIDADASDETGCDEALADDGSPRAAYRAAAQRFSSLGAAELRTRQKQAEAIEQAEGITFRVTGEDEPRVFPIDPFPRIIDPDTWATLSVGLEQRARALNAFLDDVYGPRRIVEAGIVEQADLERSPGYVDEGRLQPPGAVRAHICGMDLVCTEGGRWLVLEDNLRVPSGLVFSHVLREITQAVHSDVAAPYDLHDPREAFDMLRDTLRVAAPQHASSLEQPRLALVSAGSSDSAWFEHRRIAELVGMPVLTPADLAITDGRLHHSDGESTYPIDVVYARIEKDLLFTAEGSDGVVLGPGLETAIATGHVAFVNTFGNGVGDDKAIYALVPEMIRFYLDEEPMLEQVPTDRCHEPGKLEHVIDHLAERVVKPVDGYGGSGITVGPECSQAELDERADELRAHPERFIAQDVIRLSTLPTYAAGADGEWALQRRHVDLRAFVHVRQAHPAPGRDDADVRGLDAADLTAHTVPAALTRTAPAGSLIVNSSRGGGGKDTWILRSDVGADDGPDA
>NZ_CP008889.1|WP_038570419.1|862848_863238_-|hypothetical-protein
MPAVAWQETPEAHDYPAAASYLSLLAGEATVTATVEAFEHAESAHFKAKDILRASRLALLPTDHPHVTSDLKKIAGGMALSPVLLVRGDAASGRDAIIADGYHRVCASYHTDENTDVPVRIVDLAHRSA
>NZ_CP008889.1|WP_051805680.1|861629_862835_-|cation:proton-antiporter
MNFAQLALICLVAVLGPLLSLPRAVRLPVVIGELAVGLALGQTGARVLDPHDSTFAFLADVGFALVMFVAGTHVPVRDKALRTGAQIGVARAVAVGVLAVPAGWAIAHVFGTGHAGLYAVLLASSSASIVMPALQGMPLTGPSIVAMLPQLALADAACIVALPFAIDPAHMSRAAIGAAAVVAVSLVVFFVLRFVEQRGYRRRVHEVSEDRGLALELRGTLTILFAVAALAQWRHVSIMLAGFCVGLAVAGVGEPKRVAKQLFALTDGLFAPIFFVWLGASLNLRDLAAHPDAVALGLVLGLSALVVHGVMAVTKQPWPVAVTTAAQMGVPVAAATTGTRLGVLRPGEDTAMLIGALVTIVATAALSGPLAKVAQQDGRVDPGRPAQERPRTSAGQTRSGA
>NZ_CP008889.1|WP_038567186.1|860337_860757_+|PIN-domain-nuclease
MAVTSWLVDRSAYVRMQAGQAQNMTEWNSRIERGLLHLPAMTRLELGFSARSGDAGREAFGLPPLSLMPIEHLTPAMEDRAFEVQMLLADHGQHRAPSIPDLLISATAEKVGLTVLAIDKDFDLIATITGQPVETLALL
>NZ_CP008889.1|WP_167539828.1|875784_876285_-|alpha/beta-hydrolase-fold-domain-containing-protein
MIDVASLRQAATQRAAARQALPFDGVITSDIVHGLPVRLYTPHGVVMDVTIYFSHGGYGLFGDLNLQDAYCRALAATSGRRVIAVDYRLAPENTFHESVNDLVRCVNACSGPGCAVLCGDSAGGALSVAAAAQVPVRALLLTNPNLDLTLESFDRHVKRPEFVGDS
>NZ_CP008889.1|WP_038570433.1|876418_876895_-|tetratricopeptide-repeat-protein
MDFEQQVSDAWASADRENPAPTIEFFEHLLDTGPTDAARLFELASAYDWAAREADAIPLYERAIAAGLDANRDRQARIQYGSSLRNVGRHTDAVAVLEEAHRRYPDSVAVDCFLTLALAGADRPAAAAITAFRAAIHDGDSDLDEYRQALTRYTADLA
>NZ_CP008889.1|WP_051805690.1|876990_877398_-|GNAT-family-N-acetyltransferase
MLALRYQWVEHDARDPEFEQVFTDWWESERRHRCAFLAIRPDGEPVGMANALIYTRMPAPGGPSARWLYAANVFVTPALRRRGIAAALMAEIIEYARREEMVRIVLAPSEMSKPLYRSLGFRVADDLMRLDLTPV
>NZ_CP008889.1|WP_150112722.1|878638_879751_-|hypothetical-protein
MSTQSLPASAEERAHFRHAVVLAGFVLIVQCLISIFYIWSLGNPTPHKVHIIVASRHEGNAGYIANQLNAQTDHPVRATITTNQQWAQQQVKDNKAAGVYVFNPLDKVNDLYYATAQPSGNRDVVEQVGAKVAAKAHTTIRGHDLVPTAAHDKRGIVPFYLVLGLIIGSYLLPTMLGTLTSPRASTWGGVGWRLGVFVIFSAIAGILGAWLARDVLDALNGPFWGLAAVGAGLSLSVSTFAYGLTSLLGPAALAVNLTLFVILGNPSAGGAFGYDLLPGFMHDIGPFLPNGAATDAMRDVAYFHGTDLLRPTLVLLAWFILGLWLVYMVSINTLTGTTPDQVAEMQHEDGFGLVGQFVEHHAPHHSNDSA
>NZ_CP008889.1|WP_081873597.1|879772_881497_-|AMP-binding-protein
MGTPTTPRHHDSWSELVEVAGYADGVPRNIDIPQQTVDEMFEETASRFGSRLALDFFGATTSYRELQTQINAAATTLQQRGVRPGDRVAIALPSCPQAVIAFYAVLRVGAVVVEHNPLSTRSEFERCFRDHEARVAIVWNKVAQTIADIDSPASLDILTVDMSRALPRLKRLALSLPLPQARTARAAITEPANVGVSFDDVVSSCARQQPTHASFPRRDPDDLALLQYTGGTTGDPKAAMLTHRNLVANVVQSMAWVPTLRAGEEVFYGTLPLFHAYGMTLCLLDAIRLGACLVLFPRFDEAAVCAAMKRRPATFIPGVPPIYERLLKLSQAGRIDLAGVRWAISGAMPLDPGLVDRWESATGGMLIEGYGMTETSPIALANPLSQDRRPGSIGIPFPSTAVRIADLDDPQSPAAPGVAGELQIQGPQVCVGYWGKPDLTDALFTTDGWLRTGDVAVQDDDGFVTIVDRLKEVIITAGFNVYPSEVEDVLRAFDGVRDVAVVGRRLAGGDEAVTAAIVLDDASSLDEEALTRHARRHLAGYKIPREYVIVPDIPLSPLGKVMRRSVRDALPPTA
>NZ_CP008889.1|WP_167539829.1|881496_882051_-|TetR-family-transcriptional-regulator
MSLASSPVSHPRSSLSRELAIDAAASVFAQHGFTQAPVHALAASAGYSKAGLLKRFGSKAAVEDAVVAAAIDHSERVAAAGQGLHGAERDEAVLAELIEVCATHPGYAALMISAFALARKEAAMIRLQPAVDALLGALDASPKGVRRVEITAAMSGAVVAVLANLDNLARVRGIALAAALRVLG
>NZ_CP008889.1|WP_150112723.1|882218_883364_+|IS30-family-transposase
MAGLSNEQQENVWALWARGESIRLIARTIGVSQTPVRTLLRRHGGVKPPPRARNRRHLSLSEREEISRGIAAGLSCRVIAARLGRHHTSISREVARHGGPGTYRAATADAGAWRNARRPKPSRLHRDPALSSMVAAKLERGWSPAQIAHWLRREQQDSLSHESIYHALYTGQIHAPRQGSLLRSGRSLRHARVAKPRQRRGVLRNMTSIHDRPTSVEDRAEVGHWEGDLIMGQRPSAVATLVERSTRLVRVVALPDGYKADAVRDALIENLAEVPPQFRRSLTWDRGREMAFHDQVTHALGMQVFFCDARSPWQRGTNETPPRASLQAGGAPSEPPAASVPREERRPTLLHPDRPRHHRDAHQRTAPQGPRLGLIPRRLHR
>NZ_CP008889.1|WP_081873599.1|883748_883988_-|transposase
MESSFALLQKNVLDRQAWRTREEPLIAIVTWIERTYHWRRRQDWLGRLTPIEFETIMTTAVELAARPLSPDRAAVPLPD
>NZ_CP008889.1|WP_150112724.1|884265_884688_-|hypothetical-protein
MSGSRWNGSCFVGASAWVLARRASIAACQELAQRWWAGLDAGERALRVQRLSGDFSNLSVWRQQQRKRVWEERNLRRGVDLSRRHADWLEAQDRREFERRREERRVWFANLAQPLRQAYATSWDDHRRRYGYSTSKDGRL
>NZ_CP008889.1|WP_038567203.1|884974_885238_+|hypothetical-protein
MIAALVLLGLGWHAGLLADTTMLVDAASSANRARTRGTCDVLVWFAGAGGGIDARFVAGAMTYATLCCLAGVAAVTLLAFVTRRKSA

Crispr_ID: NZ_CP008889_3

• CRISPR_ID: NZ_CP008889_3
• CRISPR_location: 1669549-1669681
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP008889_3

Consensus_repeat	Method
ACCGCACCTGGATGCGTGGCGTGGGCAGGCCTGGCGAC	CRISPRCasFinder

spacers of NZ_CP008889_3

>3.1|1669587|57|NZ_CP008889|CRISPRCasFinder
CTGGGCGCCCGACATCATCGCCGCCCTTGCCTGCACGACGCGGTCTTTGCGTGAATG

CRISPR arrays and Neighbor proteins around NZ_CP008889_3

CRISPR arrays

The CRISPR arrays of NZ_CP008889_3

>merge|NZ_CP008889|3|1669549-1669681|CRISPRCasFinder
ACCGCACCTGGATGCGTGGCGTGGGCAGGCCTGGCGACCTGGGCGCCCGACATCATCGCCGCCCTTGCCTGCACGACGCGGTCTTTGCGTGAATGACCGCACCTGGATGCGTGGCGCGGGCAGGCCTGGCGAC

>NZ_CP008889|3|2|1669549-1669681|CRISPRCasFinder
ACCGCACCTGGATGCGTGGCGTGGGCAGGCCTGGCGAC	CTGGGCGCCCGACATCATCGCCGCCCTTGCCTGCACGACGCGGTCTTTGCGTGAATG
ACCGCACCTGGATGCGTGGCGCGGGCAGGCCTGGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_038570941.1|1672614_1672836_+|hypothetical-protein	unknown	unknown	gnl|CDD|381121
NZ_CP008889.1|WP_038568336.1|1680840_1681629_+|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl|CDD|381170
NZ_CP008889.1|WP_006945436.1|1679385_1680837_+|cobyric-acid-synthase	unknown	unknown	gnl|CDD|234838
NZ_CP008889.1|WP_038568329.1|1675636_1678000_-|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|376718
NZ_CP008889.1|WP_006945360.1|1666781_1668614_+|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl|CDD|225922
NZ_CP008889.1|WP_038570930.1|1663153_1663564_-|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_CP008889.1|WP_038570925.1|1658217_1659195_-|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|273194
NZ_CP008889.1|WP_051805899.1|1670314_1671919_-|HNH-endonuclease	unknown	unknown	gnl|CDD|238038
NZ_CP008889.1|WP_038568326.1|1672884_1674990_-|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl|CDD|235395
NZ_CP008889.1|WP_150112844.1|1663563_1666623_-|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl|CDD|234734
NZ_CP008889.1|WP_006945440.1|1659280_1660264_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl|CDD|211689
NZ_CP008889.1|WP_038568312.1|1657054_1658062_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP008889.1|WP_006945470.1|1669938_1670256_-|DUF3817-domain-containing-protein	unknown	unknown	gnl|CDD|378962
NZ_CP008889.1|WP_038568331.1|1678126_1679287_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|180537
NZ_CP008889.1|WP_038568309.1|1655845_1657042_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP008889.1|WP_006945413.1|1668791_1669475_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293792
NZ_CP008889.1|WP_051805895.1|1660260_1661154_-|RNase-adapter-RapZ	unknown	unknown	gnl|CDD|235450
NZ_CP008889.1|WP_038568324.1|1672134_1672545_+|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240038
NZ_CP008889.1|WP_006945478.1|1675038_1675626_-|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP008889.1|WP_038568315.1|1661150_1663154_-|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|234792

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_038570941.1|1672614_1672836_+|hypothetical-protein	gnl|CDD|381121	cd17584, REC_typeB_ARR-like, phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains. Type-B ARRs (Arabidopsis response regulators) are a class of MYB-type transcription factors that act as major players in the transcriptional activation of cytokinin-responsive genes. They directly regulate the expression of type-A ARR genes and other downstream target genes. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Cytokinin signaling involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-B ARRs contain a receiver (REC) domain and a large C-terminal extension that has characteristics of an effector or output domain, with a Myb-like DNA binding domain referred to as the GARP domain. The GARP domain is a motif specific to plant transcription factors. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	0.00109884
NZ_CP008889.1|WP_038568336.1|1680840_1681629_+|precorrin-6A-synthase-(deacetylating)	gnl|CDD|381170	cd11643, Precorrin-6A-synthase, Precorrin-6A synthase (also named CobF). Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.	5.89833e-121
NZ_CP008889.1|WP_006945436.1|1679385_1680837_+|cobyric-acid-synthase	gnl|CDD|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_CP008889.1|WP_038568329.1|1675636_1678000_-|dephospho-CoA-kinase	gnl|CDD|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP008889.1|WP_006945360.1|1666781_1668614_+|glycoside-hydrolase-family-15-protein	gnl|CDD|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.84734e-122
NZ_CP008889.1|WP_038570930.1|1663153_1663564_-|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.10886e-24
NZ_CP008889.1|WP_038570925.1|1658217_1659195_-|DNA-binding-protein-WhiA	gnl|CDD|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	1.61637e-121
NZ_CP008889.1|WP_051805899.1|1670314_1671919_-|HNH-endonuclease	gnl|CDD|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.64336e-13
NZ_CP008889.1|WP_038568326.1|1672884_1674990_-|excinuclease-ABC-subunit-UvrB	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP008889.1|WP_150112844.1|1663563_1666623_-|excinuclease-ABC-subunit-UvrA	gnl|CDD|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP008889.1|WP_006945440.1|1659280_1660264_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl|CDD|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.65776e-94
NZ_CP008889.1|WP_038568312.1|1657054_1658062_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP008889.1|WP_006945470.1|1669938_1670256_-|DUF3817-domain-containing-protein	gnl|CDD|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	1.32128e-24
NZ_CP008889.1|WP_038568331.1|1678126_1679287_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|180537	PRK06348, PRK06348, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP008889.1|WP_038568309.1|1655845_1657042_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP008889.1|WP_006945413.1|1668791_1669475_+|MBL-fold-metallo-hydrolase	gnl|CDD|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	6.75617e-34
NZ_CP008889.1|WP_051805895.1|1660260_1661154_-|RNase-adapter-RapZ	gnl|CDD|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.34223e-157
NZ_CP008889.1|WP_038568324.1|1672134_1672545_+|NUDIX-domain-containing-protein	gnl|CDD|240038	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.48381e-25
NZ_CP008889.1|WP_006945478.1|1675038_1675626_-|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.35399e-84
NZ_CP008889.1|WP_038568315.1|1661150_1663154_-|excinuclease-ABC-subunit-UvrC	gnl|CDD|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0

Protein sequences

>NZ_CP008889.1|WP_006945413.1|1668791_1669475_+|MBL-fold-metallo-hydrolase
MSSYLSDVKPGDAPSRLDLPGLTMWKLSVSDMHNNVYLLRDATPETGGAAVLIDAAADAGAITAMLDEARVDRLDAVVTTHKHWDHHRALPELAERADATLAGLEDGPHLPVAPARTLSDGDTIQFGAQTLVAHHVPGHTPGSVVLSWTPPAGSDALPQLWTGDTLFPGGVGATTHSDEQSFDELFTMVRDRIFGRFDDADVHPGHGDDTRLSVERPHLDEWRERGW
>NZ_CP008889.1|WP_006945360.1|1666781_1668614_+|glycoside-hydrolase-family-15-protein
MSVDFTPSEVNTTPIEDYAIIGDTETAALVSLRGSIDWLCLPRFDSSSCFTALLGTPDHGRWLLGPAEEATTTRAYREDSFILETIHETATGKVKVTDLMPVSDGRADVLRRVEGLEGTVTMEQEWVVRLNYGKVKPWVSHHPGHVQDEEVLVAIAGPDMLIFRGDRLPVGNEGRHRDLFDVSAGETLDFSMTWVPSYKPIPIPLDTDKRIASTLGRWNDWIGHCTYDGPHADVVRRSLLVLNLLTDSRRGGIVAAPTTSLPEDFGGERNWDYRYCWLRDASLGLESLLRAGYVDATIKWREWLVRALAGDPEDMQIMYTIDGGRELPERALDHLPGYADSRPVRVGNGAVDQKQTDVLGEVMIAFEHARAKGGYENEQSWAIQAALVDQLAEHWDEPDNGLWEIRGPLQHFTHSRVMVWAAFNAAIAAVEKHGHPGDVERWREVRELVREEILTKGFNVQKNTFTQHYNTTEVDASLLLIPAVGFLPADDPRVIGTVRAIENDLMRGGFLLRYRTESGVDGLAGDEHPFLACSFWLVSAYAKIGELDKAEELFDRLCDLPNDIGLLAEEYDPEEMTQVGNYPQAFSHLTLIGAGYDLHEAQVAARGANV
>NZ_CP008889.1|WP_150112844.1|1663563_1666623_-|excinuclease-ABC-subunit-UvrA
MAPRRGHDHLLVRGAREHNLKNVSIEIPRDALVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYFRLLFARAGRPHCPVCGAPVGSQTPQQIVDSIQELPSGTRFQVLAPVVRARKGEYVDLFAELQTKGFSRARVDGETVTLSEPPTLEKQKKHTIDVVVDRLVAKGPDDLSGRQRLTDSVETALGLADGLVVIERVVREGAEDAHDELPLERRYSEKLACPNDHALSMDAIEPRSFSFNSPFGACPACTGLGTELRVDPDLIIPDEDKTLREGAVLPWAQGSGAADYFVRVMGALGKESGFDLDTPWRDLPAKAKTMLLEGKNHKVHVTYRNRFGRERSYSTGFEGVIPFVKRRHTETESEWSRERYEGYMREVPCPTCNGARLKPESLSVTIGGKSIAEVCALPISESAHFLDDVDFTSRERQIAERVIKEIAARLGFLLDVGLDYLSLDRPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLTRLRDLGNTLIVVEHDEDTIATADWIVDIGPGAGEHGGEVVYSGPVKGLLAEKKSVTGGYLSGRLSIPVPQTRRGQDGRRLVVEGAREHTLKDIDVAFPLGNLVVVSGVSGSGKSTLVNDILYTTLANDLNGARQVAGRHKRVTGTELLDKVVHVDQSPIGRTPRSNPATYTGVFDAIRKLFAETQEAKIRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVHFKGKSIAEVLDMPIEEAAEFFEAVPAIARHMRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLAAELQKRSSGRTIYVLDEPTTGLHFEDIRKLLEVIQGLVDKGNTVVVIEHNLDVIKSADWVIDMGPEGGFRGGEVVAEGTPEQIAQVEASHTGRFLRPLLEAAGVTPTIVAQKPVIDPRAAMKKTAAKKTASKQTAAGKTTAKNTSAAPSAAKKTTRKKA
>NZ_CP008889.1|WP_038570930.1|1663153_1663564_-|Rieske-(2Fe-2S)-protein
MSDLQAQFTRRSAMTATIAVAGTGMLAACGGGDDEASTKSVDAAIDASKVSVGSGFVDRGNSIVVTQPTKGTFKAFTSVCPHQGCQVGEVTDKAIVCPCHGSRFDPMTGAVLAGPADKPLAEKKVEVKGSQLHVTG
>NZ_CP008889.1|WP_038568315.1|1661150_1663154_-|excinuclease-ABC-subunit-UvrC
MADPRTYRPKTGDIPTEPGVYRFRDRDGRVIYVGKAKNLRSRLSNYFQDLRLLHPRTRTMVTTAASVEWTIVRTEVEALQLEYAWIKEFDPRFNVKYRDDKSYPYLAVTMSDAVPRAQVMRGRKRPGTRYFGPFTHAWAIRDTLDQLMRVFPMRTCSNGVYRRAEASGRPCLLGYIDKCSAPCVGKVSKAEHREIAQDFCDFMAGDSARFTREIERRMKAAAADLDFEQAARLRDDLGALEKVLQKSAVVFDDATDADVFGVAEDDLEAAVQVFHVRGGRIRGQRGWVTDKGSDAGVNTADLVEAMLLEVYGDLQGRDDVPREVLVPSLPPDVETVSSWLRERRGSNVDVRVPQRGDKRELAATVAKNAEHALARHKVSRASDLTARSQALEELQENLGLPEAPLRIECFDISHVQGTNVVGSMVVFEDGLPRKSEYRRFIVNGIEGEDGTLRNDDVAAMHEVLTRRFARLAKESADLAPATTGEIPADAATAGPSLRDENGRIKRFAYRPQLLVVDGGRPQVDAAARALADVGFDDIPVVGLAKRLEEVWLVDDDYPVILPRTSEALYLLQRVRDEAHRFAITFHRERRSKSMTTSALDGIAGLGPAKQKALLAHFGSLKRIRAADADALCEVKGIGPTLAETIVRSLRQEQGEPAVNVMTGEVVE
>NZ_CP008889.1|WP_051805895.1|1660260_1661154_-|RNase-adapter-RapZ
MNEREAAMSHPPRAELMIVTGMSGAGRSTAANVLEDQGWYVVDNLPPQLLPDLAGLVDASAEDVPRLAAVVDVRSRAFFTDFRAGLERLRDDGWRPSVVFMDATDEALVRRFESVRRPHPLQGEGRMLDGIIREREILRDLRSNADILIDTSGLNVHQLSAKVHELVGDTGGPALRVAVMSFGFKYGIPLDADLVFDMRFLPNPFWNPELRPFSGKDEVVRDFVLGQPGAREFLDGVLALLEPMTQGYLREGRSYVTLAVGCTGGKHRSVAMAEELAKRLASDQLGTLVVHRDLGRE
>NZ_CP008889.1|WP_006945440.1|1659280_1660264_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MKRPAVAALGGGHGLFASLEALRLVTDKITAIVTVADDGGSSGRLREEYDILPPGDLRMALAALCDNSQWGIAWRDALQHRFPGEGPLGGHALGNLLIAGLWDSLGDPIQGLDMVGRLLSARGRVLPMSLQPLRIDAKVRGADPADPDGVREVSGQVAVAQTPGTVLNLRLFPDPPQPCREAIDAVLDADWVILGPGSWFTSVMPHLLVPDLLDALVQTKAKRMLTLNVQMDTGETSGFSASDHLEVLAAHAPALHLDAILADPGVVGDDARAREALESSAAALGASVVYKPVADQESAGVHDTLRLATAYRDVMESAARAQARRRA
>NZ_CP008889.1|WP_038570925.1|1658217_1659195_-|DNA-binding-protein-WhiA
MAMTAAVKDELARVVVTPQQTRKSEVAAMLRFAGGLHLVAGRVVVEAELDTGVAARRLRTNITQLYGHTSELAVMSAGGIRRQTTYLVRVAKPELAVQTGLVDAKGRPVRGLPPKIVNGTLDDAAAAWRGAFIAHGSLTEPGRSSSLEITCPGSEVALALVGAARRLGVPAKAREVRGVDRVVIRDGEAIGAMLTHMGAEDARLVWEERRMRREVRATANRLANFDDANLRRSARAAVAAGSRVARAMEILGEDVPDHLRQAGELRIEHKEASLEELGALADPPMTKDAVAGRIRRLLAMADKRAADQGIPGTDANLTPDMLEDD
>NZ_CP008889.1|WP_038568312.1|1657054_1658062_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVGINGFGRIGRNFFRAVKASGADVEIVAVNDLTDNKTLANLLKYDSILGRFDGEVSYDENFLTVDGKKIAAFAEKDPAKLDWASVGADVVIESTGFFTDAEKAKAHLTGGAKKVIISAPAKNEDITIVMGVNDDQYDASKHTIISNASCTTNCLAPMAKALNDGLGIERGLMTTIHAYTGDQRLHDAPHSDPRRARAAAINIVPTSTGAARAVALVLPELKGKLDGYALRVPTPTGSATDLTFEAPRETTVEEVNEIVKKAASEGPLKGYLQYTEDPLVSTDIVTDPASCIFDSGLTKVIGNQVKVVGWYDNEWGYSNRLVDLTTLVGSSL
>NZ_CP008889.1|WP_038568309.1|1655845_1657042_-|phosphoglycerate-kinase
MKSISDLGDLRGKTVLLRSDLNVPLDGSTITDDGRIRASVPTIQELTKAGARVVVVAHLGRPKGEPEAKYSLQPVVGRLSELLGQDVAFATDTVGDSARSTVESLGDGDVALLENLRFNAGETSKDEAERKQFAEQLASLADVFVSDGFGVVHRKQASVYDVAQLLPSAMGGLVKTEVEVLKQLTENPKRPYAVILGGAKVADKLAVIENLMQTADRLLIGGGMVFTFLAAEGHEVGKSLLDTEQIETVKGYIAKAKELGVEIVLPSDVVVAPEFAADKGHEVVSIDAIPADQMGLDIGPESAKLYASKLTDCKTVFWNGPMGAFEMEPFAAGTKAVAQALVEATENGALTVVGGGDSAAAVRQLGFSDDQFGHISTGGGASLEYLEGKELPGISVLG
>NZ_CP008889.1|WP_006945470.1|1669938_1670256_-|DUF3817-domain-containing-protein
MSRIFKIFAFAEAVSWGLLLIGMFFKWVLKTTEVGVQIAGPIHGVMFIGYVLCALKLWQEKSWPNKTIGIGLLCAVIPFATIWFEKRAEARGELGDEPRQKPLAG
>NZ_CP008889.1|WP_051805899.1|1670314_1671919_-|HNH-endonuclease
MDQTLAVTAETVAAMPSTELVGAWVLLTRAIAEQALADPETLAPCSGDALPRTFDERHTRTFTLQAQLEDIAVAAQEVTRAADAVLHAVAVEHEDTVAQRAHLDEENYGLCERPPTAGEFAGDDLGNALGCSSATASRLAVDGRMLRDRAPALHELTLRGACRTMVAATLAREMAHLDDELAAEVLTDLVSGGAHHLSVDGARSRARKLLHDRRLAQTEADTLDPRREHGLWFTPHLDCDTLTEVRLIMATEDAARLRAAIEAHAQTLNDHAPDPRDELARWRAASHVSVAGSGTEPLGAVRVDALLDLVFANSTVNTVMHLKVPVHASPPAPSDRRFGTLEPPASLASVPNCGLDEGGLDEDGLGRPRQHAEAGPIGVITRPLDTLGAAHIPGLGHVDAAAVRRVAALVDTTFTIDLVDGAWTTLASCSTTYRPGARVARLVRERDVHCRFPHCTRVSTNCDLDHVVPHADGGPTSVGNLQALCRHHHRAKTFGGYAVTMTPDGVCTWESPTGRRWTTLPSGETVATTLAPAS
>NZ_CP008889.1|WP_038568324.1|1672134_1672545_+|NUDIX-domain-containing-protein
MASATLPTHIAVVALVRDARVLLAHRHPNRMNYPDLWDLPGGHVEPGESAECAARRECVEELGVTVIDAERFPMACKDPALLKHAFFATRWVGNPRNIAPDEHDDIGWFAESELPRLAMADPAGCQDLVRLMRAIK
>NZ_CP008889.1|WP_038570941.1|1672614_1672836_+|hypothetical-protein
MPQPAGFAFLERDGVVVITHHGRTATTLRGARAADFLEDVEDGDAQEIMARLTGNYRRGNERQARNHPRNKGR
>NZ_CP008889.1|WP_038568326.1|1672884_1674990_-|excinuclease-ABC-subunit-UvrB
MRPVTDLQRSVAPIKVESEFEPAGDQPKAIAELSKRVKAGEQDIVLLGATGTGKSATTAWLIEQVQRPTLVLAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARLKVGQEINRDELLRRFVEMQYTRNDLAFTRGTFRVRGDTVEIIPVYEELAIRIEFFGDEIDRLYTLHPLTGEIVNEESEMYVFPATHYVAGPERMERAIAGIEVELGDQLKRFEAEGKMLEAQRLRMRTTYDIEMMRQVGSCAGIENYSRHMDGRGPGTAPNTLLDYFPEDFLLVIDESHQTVPQIGAMYEGDMSRKRTLVDHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGDYEMSKSDGYVEQVIRPTGLVDPEIVLKPTKGQIDDLLGEIRTRTDKNERVLVTTLTKKMAEDLTDYLLDKGVRVRYLHSEVDTLRRVELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVSGQVHMYADKVTPSMQEAIDETSRRRELQIAYNTEKGIDPQPLRKKIADITDMLQRESADTDALLGSGRSMSRGKGRGGSGAASADANVAAGAKREASSAADLAGLIQELQAQMSEAASELQFELAARLRDELRDLKKELRQMTEAQK
>NZ_CP008889.1|WP_006945478.1|1675038_1675626_-|dephospho-CoA-kinase
MKVGLTGGIGSGKSAVARLLVEHGALVVDADAVAREVVAPGSAGLAQIADRFGDGVLTARGELDRGALGAIVFADEGARRDLEAITHPLIAARTLELFAAAKPGQVLVHDIPLLVELGREGDYDVVIVVDAPVETRLQRLEEHRGMPREVAEARMRSQASDEQRRAVADVWIDNAGDEDTLRRRVDDVWRTHLQG
>NZ_CP008889.1|WP_038568329.1|1675636_1678000_-|dephospho-CoA-kinase
MSSFTTRLHDRLGLRTSPRIFFGSAALIVLFTASMALFPDPVRSVFGAAAHWLRFDLGWFYTAAATLLVVFSLGLAASRYGRVKLGPDDAEPAYSGLSWFAMMFAAGVGATLMFWGIAEPINHYARPPLGAAPYSDEAAWDALSIANFHFGIHMWAILVVPGLCFGYFTYKRNLPPRVSSAFHPLLGDRIHGPIGQAIDIIAVVSTVFGLAVSTGLGALQINSGMNDVFGVPIAGWVQAAILAVITAAALTSVLAGMDKGVKNLSYANILMAIALLLFVAMTAMSASDVARGIVESAGRYLSQLPMLSTFNDTMHHGAWSGQWTVFYWAWTVTWAPFVGMFVAKISRGRTIRAFVTASIGLPSAFVIVWIGVYGLTSITSDRASAKAAGQGGSLAHTIVDENNPQAALFQFLRDLPGYLPVATLALAVIVIFFITSIDSGALVMDAMVNGHEDASVRRQRVFWSLSVGAVCAAIILTAGEDGLSALQEVIIVIGFPITVLTVLQAWLLFQALREDAGAARPMRTRQWKQVLPAEEYERRAAEGVLDEDAYVVLPEFEEGTEPEFETHVPTTAQTQQQAAERAAVSLGLTGPVAAGKSVVGDAFERRGAVVVEFDEVMRELLVPGEEALDRLREVFSETIAHPDGTIDWHTLDDLTTRSPAARERMYAVIGPFVRAEADARAKAVGDDSVLVLDLALLTDAATPRDFDHVVVVEAPAEVRVERLMAERGLDLEQAWAEIDADTQGRERSDAADVVLSNEGSIDELDAAVGAFWDDEVAPALNSAATRV
>NZ_CP008889.1|WP_038568331.1|1678126_1679287_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MPRFISSRYQAGSATQMSVIADRAREFDDVINFSLGDPDLTTDAGIIEAAAADAKAGHTHYTSSLGYPELRQGIVDMYRDDYGVERSVDDVMVTTSGCHAMWLVMETLLDDGDEVLVIEPYFTPYPHQVRLARGVPVFVPTTKENGFQVTIGDLEAAITPRTRGVIVNTPCNPTGVQWSREALEGVARVATEHDLVVVADDIYTLFTYREPFVPFASLPGMAERTVTIGSFSKDYLMTGWRIGWILAPADFVSTARDVNENNVFTAPSISQRAALNALERRAELRPPVKELYRGRLQRAYERVQRLPHMDAFEPQGTIYLWVDIRETGLTSLECAARIVEEAHILTIPGTAFGASGEGFLRLAVTVGEEQIDEAFDRLERMSIFGD
>NZ_CP008889.1|WP_006945436.1|1679385_1680837_+|cobyric-acid-synthase
MNGLLVTGTSSDAGKSLVVTGLARAWARRGVRVAPFKSQNMSNNSMVCRDGSEIGRAQYLQCEAAGVEAASVHNPVLLKPGSDREAFVVLRGRPAGRLRAGEYATGRRHLADAAFTAFEELAGDVDVVIAEGAGSPAEINLRGGDYVNMGLARRFDLPVALVGDIDRGGVLAALYGTWALLDDDDRRHLAAYVINKFRGDASVLEPGLDEITRRTGLPCRGVLPWLEDVWLDSEDALSIGRWRPSLAGGDADEACLSVAVVRFPRTSNATDVDALAAEPGVDVRVTTDADLCREADLLVLPGSRATVSDLAWLRARGLADVVADRVRRGAPVLGICGGYEMLVDRLEDSVESGVGAVDGLGHLRGSVRFEAEKTLARPAGTWRGEDVDGYEIHHGVVTAEPNFPGGTCAGAVWGTIWHGTLENDGFRRAWLRDVARASGSAWVPRDGAMGFRARRSAMIDALADACDEHLDVDALLDLAMRKG
>NZ_CP008889.1|WP_038568336.1|1680840_1681629_+|precorrin-6A-synthase-(deacetylating)
MTDTTTPREVRVIGIGAGSPRHLTLEAIDAMREVDVFLVADKGDEKRELVEVREALCRTHLAEGSYRFVALPDPRRGPDAERDAHQYTDGVLDWHDARAHAWGEVIDALEPGIVVGFLVWGDPAFYDSTIRVVDRLARHRPVNSLVIPGISAFQTLAAAHGIVLHEIGQPVHVTTGRRLVSEWSPGLGTVVVMLDGHLACRHLVETHPALVIHWGAYVGMPQQTLRAGRLVDVIDEIVDVRARLKQEHGWVMDVYALSLPAS

Crispr_ID: NZ_CP008889_4

• CRISPR_ID: NZ_CP008889_4
• CRISPR_location: 2681786-2681925
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP008889_4

Consensus_repeat	Method
ATCAGATATAGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGC	CRISPRCasFinder

spacers of NZ_CP008889_4

>4.1|2681831|50|NZ_CP008889|CRISPRCasFinder
GCGGAGCTTGCGGAGGGCCTGCGCCGGGGGCGGGGTGCTTCTACTTGTCG

CRISPR arrays and Neighbor proteins around NZ_CP008889_4

CRISPR arrays

The CRISPR arrays of NZ_CP008889_4

>merge|NZ_CP008889|4|2681786-2681925|CRISPRCasFinder
ATCAGATATAGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGCGCGGAGCTTGCGGAGGGCCTGCGCCGGGGGCGGGGTGCTTCTACTTGTCGATCAGATATCGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGC

>NZ_CP008889|4|3|2681786-2681925|CRISPRCasFinder
ATCAGATATAGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGC	GCGGAGCTTGCGGAGGGCCTGCGCCGGGGGCGGGGTGCTTCTACTTGTCG
ATCAGATATCGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_038569503.1|2678387_2678930_-|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl|CDD|378696
NZ_CP008889.1|WP_038569522.1|2690487_2691543_-|zinc-dependent-metalloprotease	unknown	unknown	gnl|CDD|274833
NZ_CP008889.1|WP_115296953.1|2685919_2686522_-|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl|CDD|236472
NZ_CP008889.1|WP_150112796.1|2677859_2678354_+|hypothetical-protein	unknown	unknown	gnl|CDD|185009
NZ_CP008889.1|WP_081873744.1|2692258_2692477_+|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP008889.1|WP_038569508.1|2683971_2684943_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl|CDD|223872
NZ_CP008889.1|WP_038569497.1|2676033_2676591_-|ATPase-AAA	unknown	unknown	gnl|CDD|223637
NZ_CP008889.1|WP_038569494.1|2674882_2675842_-|DUF2520-domain-containing-protein	unknown	unknown	gnl|CDD|227782
NZ_CP008889.1|WP_038569481.1|2673111_2673447_-|Lsr2-family-protein	unknown	unknown	gnl|CDD|378714
NZ_CP008889.1|WP_038569490.1|2673934_2674792_-|pantoate--beta-alanine-ligase	unknown	unknown	gnl|CDD|376824
NZ_CP008889.1|WP_038569514.1|2686518_2688567_-|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl|CDD|273520
NZ_CP008889.1|WP_051806177.1|2676661_2677810_+|hypothetical-protein	unknown	unknown	gnl|CDD|367133
NZ_CP008889.1|WP_038569506.1|2680534_2681710_+|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl|CDD|223722
NZ_CP008889.1|WP_038569485.1|2673608_2673863_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_038569511.1|2684939_2685923_-|dihydropteroate-synthase	unknown	unknown	gnl|CDD|238380
NZ_CP008889.1|WP_051806179.1|2679013_2680099_+|DMT-family-transporter	unknown	unknown	gnl|CDD|273359
NZ_CP008889.1|WP_038569517.1|2689429_2690491_-|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl|CDD|238950
NZ_CP008889.1|WP_038571717.1|2688804_2689356_-|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl|CDD|223707
NZ_CP008889.1|WP_051806181.1|2682131_2683259_+|hypothetical-protein	unknown	unknown	gnl|CDD|226406
NZ_CP008889.1|WP_051806182.1|2683441_2683975_-|DUF3180-domain-containing-protein	unknown	unknown	gnl|CDD|378650

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_038569503.1|2678387_2678930_-|CGNR-zinc-finger-domain-containing-protein	gnl|CDD|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	6.65179e-16
NZ_CP008889.1|WP_038569522.1|2690487_2691543_-|zinc-dependent-metalloprotease	gnl|CDD|274833	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated. A phylogenetic tree of the DUF2342 family (TIGR03624) consists of two major branches. One of these branches, modeled here, is observed almost entirely to be found in coenzyme F420 biosynthesizing species of the Actinobacterial, Chloroflexi and Archaeal lineages. The few organisms having genes within this family and lacking F420 biosynthesis may either have an undiscovered F420 transporter, or may represent F420-to-FMN revertants. This family includes a Chloroflexus Aurantiacus protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.	5.97523e-133
NZ_CP008889.1|WP_115296953.1|2685919_2686522_-|GTP-cyclohydrolase-I-FolE	gnl|CDD|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	5.89968e-113
NZ_CP008889.1|WP_150112796.1|2677859_2678354_+|hypothetical-protein	gnl|CDD|185009	PRK15049, PRK15049, L-asparagine permease.	1.05769e-06
NZ_CP008889.1|WP_038569508.1|2683971_2684943_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl|CDD|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.86496e-48
NZ_CP008889.1|WP_038569497.1|2676033_2676591_-|ATPase-AAA	gnl|CDD|223637	COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism].	3.78353e-15
NZ_CP008889.1|WP_038569494.1|2674882_2675842_-|DUF2520-domain-containing-protein	gnl|CDD|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	8.25977e-51
NZ_CP008889.1|WP_038569481.1|2673111_2673447_-|Lsr2-family-protein	gnl|CDD|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	6.52445e-48
NZ_CP008889.1|WP_038569490.1|2673934_2674792_-|pantoate--beta-alanine-ligase	gnl|CDD|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	4.03869e-146
NZ_CP008889.1|WP_038569514.1|2686518_2688567_-|ATP-dependent-zinc-metalloprotease-FtsH	gnl|CDD|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP008889.1|WP_051806177.1|2676661_2677810_+|hypothetical-protein	gnl|CDD|367133	pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase. This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. In eukaryotes it plays a role in mitochondrial complex I activity.	3.38353e-07
NZ_CP008889.1|WP_038569506.1|2680534_2681710_+|NADH-quinone-oxidoreductase-subunit-D	gnl|CDD|223722	COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion].	7.25246e-139
NZ_CP008889.1|WP_038569511.1|2684939_2685923_-|dihydropteroate-synthase	gnl|CDD|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	2.985e-104
NZ_CP008889.1|WP_051806179.1|2679013_2680099_+|DMT-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.49552e-23
NZ_CP008889.1|WP_038569517.1|2689429_2690491_-|tRNA-lysidine(34)-synthetase-TilS	gnl|CDD|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	6.68542e-50
NZ_CP008889.1|WP_038571717.1|2688804_2689356_-|hypoxanthine-phosphoribosyltransferase	gnl|CDD|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	9.07982e-86
NZ_CP008889.1|WP_051806181.1|2682131_2683259_+|hypothetical-protein	gnl|CDD|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	2.10741e-10
NZ_CP008889.1|WP_051806182.1|2683441_2683975_-|DUF3180-domain-containing-protein	gnl|CDD|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	3.66334e-13

Protein sequences

>NZ_CP008889.1|WP_038569506.1|2680534_2681710_+|NADH-quinone-oxidoreductase-subunit-D
MSSPASSPRELTVGMGAGGLATSDMVLNIGPQHPATHGVLRLRITLDGERITKCEPIVGYMHRGAEKLFEVRDYRQILVLANRHDWLSAFSSEIGVALAVEKMLGMEVPERATWTRTLLSELNRVLNHLMFLGSYPLELGAITPMFYVFREREELQGVMEEIAGGRLHYMFNRVGGLRDDIPAGWLDRAAAAVSLVRSRMPEIESFIVGNPILNARTKGVGVVSREMVEQYGITGPIARASGVDVDLRRDDPYLAYGELFAPGGPGRVITRSEGDSLARLEVLLDQTHVSLDLADACIEVLRSLPQGPVNVKLPKVLKVPEGDGYVATENPLGFNGYYIVSRGEKTPWRLKLRSASFNNMACLGEVMRGQLLADMVAILGSMFFVVGDIDK
>NZ_CP008889.1|WP_051806179.1|2679013_2680099_+|DMT-family-transporter
MAPSQIAHDIEPIPVATRRRPGRSGAMSHTSMGLIIAIVSCAAFGTSGSFAKALLGSGWTPVTAVAARISIAALALAIPTAMALRGRWHVLRDNIKPIVLYGIFGVAGCQLFYFNAVTHVSVGVALLIEYLAPMLLVGWAWARYGRTPRRLTIAGTAAAIVGLLFVLDVFNGFSVDPIGIAWALGAALCLTVYFVIAGDEESELPPIALAGGGMSVGAVILLAMCALGVQPVSVSTADVTFAGSQMPFWVPVLGLALIAAALAYATGIYAARALGTTVASFISLLEVLFAVAFAWMFVGEAPTLVQVVGGVFIVGGVVLVRLDESRHAESFGPVVAAEHDAEIERWLDDVRPTRDEECVTR
>NZ_CP008889.1|WP_038569503.1|2678387_2678930_-|CGNR-zinc-finger-domain-containing-protein
MPFGHDTEDGLLSVAALVNTATPDDTLTEIADLDAFVESWGYTGTHERTHAELDEVRVLRPRFLEAWSLSRDELVAFVNEVMLQYRALPQLVRHDEWDYHLHATPSDAPLASRMAVDAVMAFVDVIRADELDRLKMCAGDCGGVLVDLSKNRSRRYCDRGCGNRANVAAYRARKAAESVS
>NZ_CP008889.1|WP_150112796.1|2677859_2678354_+|hypothetical-protein
MSPPPGTISLETRHLAASGEGESNGPQQQRFRRRESRDINSVVVHLGVFYLGSILALSMLMATSAYSGSQSPFVTALGYRRAVARGDAHAVDFRLPGAPVTTWICIVSLVAVALYVMPDFSSANWYYTLVAGVLMLVGTNVGYEIGRRRLARNGLPDLGEGADD
>NZ_CP008889.1|WP_051806177.1|2676661_2677810_+|hypothetical-protein
MTQQFENSDMPVSHAVPWRDAWQAALYGRDGFYRRDEGPGGHFATSAQGIPGVDEVLAQAIVAMAERIDADVVVDFACGRGELLDTVSRFVDDVDLVGVDVVERPPELSSRIAWVRSAGGASIPSLDVIEGRRAFVVAHEWLDVVPCDIAEADDDGVLREVLVTPDGDETLGAPLSPAAARWAARHAPTAMPVHVGDLRPHSSAAQPTIDAPDDPPPHPVPDDALPPADGRENATRREPGERVEIGMTRDAAWAALVAEVTRHAAAGSVVVGIDYTSTSATRPPFGTLTGFRDGSECAPVPDGSCDVTAHVALDSLDVDDLRTQRDVLLELFGELALEPVPLALASSDPPVYLARLAARSALATATHPGGLGAFAWFTRTIG
>NZ_CP008889.1|WP_038569497.1|2676033_2676591_-|ATPase-AAA
MPFLSLDADLPPARRVIIAGPSGSGKTTACALVSDRIGVPHHEIDALFHGPGWQPRPQFHDDVARFVATEAWVTEWQYGEVRGLLAERAELLIWLDLPRGTVTRQVVSRTLRRRLLRQELWNGNTEGPLRTFFTDPEHIVRWSWQGHARYRGLIGDVAARRPQLPIVRVCSRRELTHLIERLSRA
>NZ_CP008889.1|WP_038569494.1|2674882_2675842_-|DUF2520-domain-containing-protein
MTFEQPTPLPGAPSLRVGVIGAGRVGAVLGAALRKAGHDVVAVSGVSEASRERAEALLPGVPVQQPVGVAAAADLVLLTVPDDELAALVHGLDFPGTLGPRIVVHTSGAQGIGVLAPVVEAGGVPLAIHPAMTFSGTAVDLTRLAGCPFAVTAMPDHRMVADALVLDMGGEPFTVDEADRTQYHAALAHGSNHLVTLVAQAAELLRRIDVDDPGRLLRPLLEAALDNALERGDKALTGPVARGDAGTLTRHLDMLEALAHTGVALDIPPTYRALALATAQRSSARGALTPMQIDAVLTALEGRGGPPGQGGVGPEPPTP
>NZ_CP008889.1|WP_038569490.1|2673934_2674792_-|pantoate--beta-alanine-ligase
MTAPVVTHARTEFADARGRLGGSVGVVMTMGALHEGHATLIRRAREENDAVVVTIFLNPLQFAAGEDLSRYPRTLQHDLEICEREGADLVFAPSPDVVYPDGEPGVRVSAGPLGGVLEGASRPGHFDGMLTVVNKLLNIVHPTRAYYGQKDAQQLLLIKRMVRDLDMSVEIVGVPTVRESDGLALSSRNAYLSDADREVALCLSKALQAGEAARNSGPAAVRRAARDVLVREPLALVDYLVLVDPVTLEQVPEYFRGEALLAVAAKVGTTRLIDNVPLVVGGREA
>NZ_CP008889.1|WP_038569485.1|2673608_2673863_-|hypothetical-protein
MDSLWPAIETLIPSIGILGLFYLILRHIMEGDRRERVAQAQWEREHDLTKGAVAPGEEEARLQNAHLPKAAPGTMSSRATTPPE
>NZ_CP008889.1|WP_038569481.1|2673111_2673447_-|Lsr2-family-protein
MAQRIHVTLEDDIDGSDASETIQFALDGVNYEIDLSDENAAKLRDSLATWVGHARRVGGRKQQSKASSTRGGGRSDLNAIRDWGRANGWAVSDRGRVSADLMKAYDAATKN
>NZ_CP008889.1|WP_051806181.1|2682131_2683259_+|hypothetical-protein
MSKHSVRPASRTRRGLASLGALSLVGGASLIGVAAMAPSASAATELVYTCDTAVGAKDVTVAIDTNAPTSGTVGSPITVSKVTGQITLPGDLGNAMAGFLGWNYVSGSTPNTVTIAGPDGTTTQDVQLTTAKTHIFNNGWVNDGTYGGFGPDGHLVLPLAGSPDTTMTPKNAGTYTISAPDRFTSTFTGTKADGTTASLDSACTYKSGTKVVDSITVTASAPSTSTTTSTSTSPSTSTSTSPTSSSSTTTSTSTSPSTSTSTSPTSSSSTTTSSSSTTTSTSTSPSTSTSTSPTSSSSTTTSTSPTTSTNPTAPSTNTASSTAMPSPSHTTGGGQGPKVETDYVGHDSMNLAGIGLAAAGVVAIGGAAFAGRREN
>NZ_CP008889.1|WP_051806182.1|2683441_2683975_-|DUF3180-domain-containing-protein
MKPVRPVTAVVAGLLVALISGGLLQLMRNSGRAVPQHSWWEVLVVLAACGLLVAGGWRIRDEVRARTKAKKEADAARRAGSDESEIRAAAAAVVQGRETVAPDTARRIVVLSQTAAIGGGILAGWYAGQAVTQLARLSVPSVRSAVLLLGVLVVSSVVLSVLGFVVQRWCMIPDDER
>NZ_CP008889.1|WP_038569508.1|2683971_2684943_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSDRITLTGLAVTACHGVLDFEKRIPQPFMLDISLEADLGPAGRSDDLEASLSYADVAARAVEVCSGEPVDLIETLAERVADACLAWEIVEAVDVTVHKPHAPAGVAFTPSTGALAGPSVSVRREQRRRVVVAMGTNLGRRVTTLRAALDSLRALEGFEVTQVSPLVETDPVGGVAQPDYLNAVVVGVTRLAPGHLIRELHRIEADHGRVRGERWGARTLDLDVVTLGEAGREDEIVLADERDGVQAGAADASWSPLALPHPRAHERAFVLVPWAQAAPWMAVRTPDGVLPLLDAVQRVDASGVRRGPSWDDDDHIDLEEGLT
>NZ_CP008889.1|WP_038569511.1|2684939_2685923_-|dihydropteroate-synthase
MTHSSEERMSEMRTDRSSPGDSNGNALDGSSPRADGPVRRPLVMAVVNVTPDSFSDGGRWFDAAAAVEHGLQLVAQGADILDVGGESTRPGAQRPSADEEARRVVPVVRELAAAGARVSVDTMRASVAEAAVAAGADIINDVSGALADPAMRDVAAASDATFVAMHWRGHSVDMQQHTAYDDIVTDVCRELAESVAALREAGVRDGRLVVDPGFGFAKTAEQNWELLARMGEFDVDGLPVLWGTSRKSFLGVAGRTPQLIADGASVPPAARDAATAATSVLAAQHDAWGVRVHDVPSTLAALDVVAAARGAVAPRSSGERVGGGMPR
>NZ_CP008889.1|WP_115296953.1|2685919_2686522_-|GTP-cyclohydrolase-I-FolE
MSAVAETHDVVGAEVDLARLEAAVREILLAVGENPDREGLVETPARVARAYAEIFAGLRQNPEDVLVKTFDVDHEELILVRDIEVYSTCEHHLVPFHGVAHVGYIPSTSGRVTGLSKLARLVDVFAKRPQVQERLTTQIADALVEHLDAQGVIVVIEAEHLCMSMRGIRKPGARTITSAVRGQLRNPATRAEAMSLVMGK
>NZ_CP008889.1|WP_038569514.1|2686518_2688567_-|ATP-dependent-zinc-metalloprotease-FtsH
MNAKKIMRTPGLYVVLALAVALLFYMFSNIGGYSRIDTSQAISLINAEKVESAKVTPDSVSLTLKDKQDIGKLKDVKRVEADYVDARGKQVVDSLSAHTPPKGYTDDPQRQGIFVTLLMNILPILLLVGLFWFLMSQAQGGGSKVMQFGKSKAKLHSKDMPTTKFSDVAGADEAVEELKEIKDFLADPEKYEKIGAKIPKGVLLYGPPGTGKTLLARAVAGEANVPFYTISGSDFVEMFVGVGASRVRDLFAQAKENSPAIIFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDDRTRVILIAATNRPDILDPALLRPGRFDRQIAVEAPDMGGRHHILQVHAQGKPMAKDVDLMSVARRTPGFSGAELENVLNEAALLTARTNGTIITNEALDEAIDRVMAGPQKKSRPMSAKERKVTAYHEGGHALVAAAMNNTDPVSKITILPRGRALGYTMVLPTDDKYSTTRNELLDQLAYALGGRVAEEMVFHDPSTGASNDIEKATDIARKMVTQFGMSENVGAVHLGNSGGEVFLGRDMGGNNREYSEQVAAMVDVEVRKLIEAAHDEAWRALNNNRDILDALVLELLEKETLEAPRLAEIFSAVRKEPVREVWLSSEQRHVSTRGPVMTPAEQRAIDLGKNPHADERPDGEISLYPPQPPAGPGLQGPSDVGPGLGD
>NZ_CP008889.1|WP_038571717.1|2688804_2689356_-|hypoxanthine-phosphoribosyltransferase
MDSSQMGNDLENVLFTEAQIHAKLEELAAQIWRDYEGKDVLLVGVLKGAILVMADLMRALPGSVPMDWMAVSSYGSGTKSSGVVRILKDLDADISGRHVLIVEDIIDSGLTLSWIRSNLESRNPASVEICTLLRKPEAAKVEIDCKYVGFDIPNSFVVGYGLDFDEKFRNLRDIGTLAPHVYS
>NZ_CP008889.1|WP_038569517.1|2689429_2690491_-|tRNA-lysidine(34)-synthetase-TilS
MSGPHPSVALTRLAVRTALQRTFPSDAAGERRVVAGVSGGADSLALAAALAFEAPKQSVAVDVVIVDHGLQAGSADVAERARRACVDQLGFADDDVRTVAVIVDADAPEGLEAAARAARRRALFDVADAVGAARAVLAHTADDQAEQVLLGLMRGSGTRALAGMRADRARLLRPFLLGPEIVPGGPVRRVDTELACEALGLEPWHDPHNDDPAFSRVRARHTLAALERELAAPTLRRSLFRTAAAAGRDADLLDRLTDEALARSAGTDDARAWPATWSVEALVGLDPALRIRALRRLLVLHGARDAELSSGHLFDVERLLVAWSGQGPIDVPGSVEVRRVGGEMTISPRRKGE
>NZ_CP008889.1|WP_038569522.1|2690487_2691543_-|zinc-dependent-metalloprotease
MGEPSYIDWRFAATTGKKLHRGGPRLSAAEASDAVAELRDAACRAHDPVAQTAQLVTPDDIGAVRVVDRSAWVDVNIASLDGMIAPVVDKITAKRAAGPVARAITAKVSGGEVGGLMAFMSSKVLGQYDIAPGGTPSLLLVAPNIVQVERELDVDPHDFRLWVCLHEEAHRVQFTAVPWLREHVVSAARDLLVDMAPTPEEMATRVGEIAKRVPEAFKEGSMGLSDIFATPEQRTRMADLAAVMSLLEGHADVVMDDVGPQIVPSVETIRARFGDRRAGLGNIDKLLRRLMGLEAKMRQYRDGAAFVRGVQEKVGIDGFNAVWAAPENLPTPAEIQRPQLWVERIHGSLFR
>NZ_CP008889.1|WP_081873744.1|2692258_2692477_+|ribbon-helix-helix-protein,-CopG-family
MSAQQEDDFYADAANQQPQGTPRRRKERLSTPVPVRFPPELLEEVRSAARADDRSVSAWIRRAVEHELRRSA

Crispr_ID: NZ_CP008889_5

• CRISPR_ID: NZ_CP008889_5
• CRISPR_location: 2837449-2837550
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP008889_5

Consensus_repeat	Method
GGCGAGAACGCCACGGACGCGCAG	CRISPRCasFinder

spacers of NZ_CP008889_5

>5.1|2837473|54|NZ_CP008889|CRISPRCasFinder
ATCGAGGCGTGGTTCCAGCAGGCGTCGAAGACCCTCGGCCTGCCGCCCTTCCCG

CRISPR arrays and Neighbor proteins around NZ_CP008889_5

CRISPR arrays

The CRISPR arrays of NZ_CP008889_5

>merge|NZ_CP008889|5|2837449-2837550|CRISPRCasFinder
GGCGAGAACGCCACGGACGCGCAGATCGAGGCGTGGTTCCAGCAGGCGTCGAAGACCCTCGGCCTGCCGCCCTTCCCGGGTGAGAACGCCACGGACGCGCAG

>NZ_CP008889|5|4|2837449-2837550|CRISPRCasFinder
GGCGAGAACGCCACGGACGCGCAG	ATCGAGGCGTGGTTCCAGCAGGCGTCGAAGACCCTCGGCCTGCCGCCCTTCCCG
GGTGAGAACGCCACGGACGCGCAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_038569695.1|2824087_2824384_-|hypothetical-protein	unknown	unknown	gnl|CDD|183800
NZ_CP008889.1|WP_051806231.1|2838554_2838779_-|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|294013
NZ_CP008889.1|WP_051806227.1|2824502_2826236_+|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
NZ_CP008889.1|WP_038569698.1|2826454_2830189_-|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143443
NZ_CP008889.1|WP_051806242.1|2843002_2843947_+|hypothetical-protein	unknown	unknown	gnl|CDD|366010
NZ_CP008889.1|WP_051806244.1|2844473_2845166_+|leucine-efflux-protein-LeuE	unknown	unknown	gnl|CDD|236807
NZ_CP008889.1|WP_006945528.1|2833701_2834139_+|hypothetical-protein	unknown	unknown	gnl|CDD|336409
NZ_CP008889.1|WP_150112855.1|2839749_2840574_+|hypothetical-protein	unknown	unknown	gnl|CDD|381607
NZ_CP008889.1|WP_006945550.1|2830375_2831119_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NZ_CP008889.1|WP_006945484.1|2843970_2844477_+|acyl-CoA-thioesterase	unknown	unknown	gnl|CDD|224523
NZ_CP008889.1|WP_051806229.1|2838089_2838458_+|hypothetical-protein	unknown	unknown	gnl|CDD|381607
NZ_CP008889.1|WP_038569702.1|2832182_2833532_+|hypothetical-protein	unknown	unknown	gnl|CDD|237081
NZ_CP008889.1|WP_038571844.1|2834543_2835596_+|ferredoxin-reductase	unknown	unknown	gnl|CDD|99812
NZ_CP008889.1|WP_051806240.1|2842094_2842955_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|227099
NZ_CP008889.1|WP_051806233.1|2838835_2839075_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_038569703.1|2835783_2837040_+|acyl-CoA-desaturase	unknown	unknown	gnl|CDD|239583
NZ_CP008889.1|WP_051806225.1|2822888_2824091_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP008889.1|WP_038569709.1|2845273_2847079_-|long-chain-acyl-CoA-synthetase	unknown	unknown	gnl|CDD|236217
NZ_CP008889.1|WP_038569700.1|2831479_2831977_+|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl|CDD|236487
NZ_CP008889.1|WP_051806246.1|2847242_2848019_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_038569695.1|2824087_2824384_-|hypothetical-protein	gnl|CDD|183800	PRK12863, PRK12863, YciI-like protein; Reviewed.	1.12451e-13
NZ_CP008889.1|WP_051806231.1|2838554_2838779_-|winged-helix-turn-helix-transcriptional-regulator	gnl|CDD|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	5.96983e-19
NZ_CP008889.1|WP_051806227.1|2824502_2826236_+|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.84297e-88
NZ_CP008889.1|WP_038569698.1|2826454_2830189_-|aldehyde-dehydrogenase-family-protein	gnl|CDD|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_CP008889.1|WP_051806242.1|2843002_2843947_+|hypothetical-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.75757e-12
NZ_CP008889.1|WP_051806244.1|2844473_2845166_+|leucine-efflux-protein-LeuE	gnl|CDD|236807	PRK10958, PRK10958, leucine export protein LeuE; Provisional.	5.20175e-50
NZ_CP008889.1|WP_006945528.1|2833701_2834139_+|hypothetical-protein	gnl|CDD|336409	pfam06445, GyrI-like, GyrI-like small molecule binding domain. This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.	0.00788132
NZ_CP008889.1|WP_150112855.1|2839749_2840574_+|hypothetical-protein	gnl|CDD|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.1703e-14
NZ_CP008889.1|WP_006945550.1|2830375_2831119_+|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.60858e-28
NZ_CP008889.1|WP_006945484.1|2843970_2844477_+|acyl-CoA-thioesterase	gnl|CDD|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	3.13931e-45
NZ_CP008889.1|WP_051806229.1|2838089_2838458_+|hypothetical-protein	gnl|CDD|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.72993e-10
NZ_CP008889.1|WP_038569702.1|2832182_2833532_+|hypothetical-protein	gnl|CDD|237081	PRK12372, PRK12372, ribonuclease III; Reviewed.	0.00307369
NZ_CP008889.1|WP_038571844.1|2834543_2835596_+|ferredoxin-reductase	gnl|CDD|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	7.94282e-87
NZ_CP008889.1|WP_051806240.1|2842094_2842955_-|alpha/beta-fold-hydrolase	gnl|CDD|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	5.12571e-14
NZ_CP008889.1|WP_051806246.1|2847242_2848019_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.21897e-16
NZ_CP008889.1|WP_038569703.1|2835783_2837040_+|acyl-CoA-desaturase	gnl|CDD|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	8.09165e-30
NZ_CP008889.1|WP_051806225.1|2822888_2824091_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.07504e-29
NZ_CP008889.1|WP_038569709.1|2845273_2847079_-|long-chain-acyl-CoA-synthetase	gnl|CDD|236217	PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.	0
NZ_CP008889.1|WP_038569700.1|2831479_2831977_+|ribonuclease-E-activity-regulator-RraA	gnl|CDD|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	2.21815e-82

Protein sequences

>NZ_CP008889.1|WP_038569703.1|2835783_2837040_+|acyl-CoA-desaturase
MTSVLNALKPGAADSKTARAAAKPDKRTGVLPTHGHLAVRPPTAAHLSDDDVERLGAELDAIRDEVLAERGAKDAAYVKRMVKIQRATELAGRVCMIGSRSKIAWSAGVGLIALGKVLDNMELGHNVLHGQWDWMRDPDIHSTTWEWDFVAPARGWQHTHNDLHHTWTNVIGKDRDVGYNILRVSDDQPWKPRDLANPLVNLVLAPMFEWGIASYDIEWDQYKAGYKSREAVMADIAALRDKAIAMVAKDYVATPLAAATVGALVGKALGRPTNFCSTALRALGGTVAANALRNVWAHAVIFCGHFPDGVDTFDERMIDGETRGDWYIRQMLGSANISGTRTFHTLTGNLSHQIEHHLFPDLPSNRYIEVAPKVREICERYGLPYNTGRFGRQLGSTWKNICVLAVPTRDEWAAYRAG
>NZ_CP008889.1|WP_038571844.1|2834543_2835596_+|ferredoxin-reductase
MLKRAAWRAAEVFTTPAPPQEFARLFNPLVSSRQLRGVVTAVRHETANSATIEFTPGGTWDAHKAGQYARIGVEIDGVRNWRSYSLVTAEGHDPAITVTAVGRVSSHLVHHTEPGDVLFLAPPQGDFLLPTGPRPLLMLTAGSGLTPVMSMLRTLLPQRRDADVVVIHSSRNSDETLFLDELTQMNDAHHSLTLVHRFTEHEGRLDLATTHDLDTLCPDWRSRKTYVCGPQEMLDDAERLWHSEDLPHELSVERFAPTLFADPDARGGVVTFEKSDKEANAEGNTTLLEVGEDAGVLLPSGCRMGICRTCLTPLVSGTVRNLSSGELCSDEGELIQTCISAAVGPVHLDA
>NZ_CP008889.1|WP_006945528.1|2833701_2834139_+|hypothetical-protein
MSDYPERHALGRIDVINLKDLPALSRDVPLDLPSIQAGWPDFEHAFDSLRGRRMMGLVYGGSHIYRMCSIRLDRDAANSLGLDETTIPGGAYLRLRLRGEAPEVYGHIGEAFDVLFGSADHDSSRPQIESYRREGEVDCLLPILA
>NZ_CP008889.1|WP_038569702.1|2832182_2833532_+|hypothetical-protein
MSSTVACIGFTDPAALAALARDKGAPAHELSSTTRWVDSSGAMLLLDRTAQYARPGFDTPVRTPYCGITPLENGLAQVTLTDVSGFELDPFTVVPDNRYTVGWAAVGRVALVAMGVDTEFFATVEDFFDSPRSAMPGVEGEPPAEVKQFGLPWPPPMEIETFLPAASSDSPLATLSGTVQFAEIRTNSVTGHEFLVSRIATVCGEIDLCTPVPLDGVPAPGSVTVGQVELLAGFPAHGLDDPSAAYDSPAERVGPTFRDGDPHSPDDVMPMDAPDLPDGLVLGEDGVVRTTEEHAAWKGGDPEAGLRPKPVPTPSTREESSTEDALDARRELPAEPDVVEPGADEADESMGVSQTREPKNAAVASADTTDTPDATDTPGAPSRAADQTPTSGAARTDVPGASTETPNQPPASGAATPQTPEATAASASDDDSAPRPGETRREWRARTGR
>NZ_CP008889.1|WP_038569700.1|2831479_2831977_+|ribonuclease-E-activity-regulator-RraA
MADIATADLYDELGDALDSCSTQFTQYGGRARFSGTIVTIKCFRDNQIVKETLNSPGAGKVLVVDGDGNVESALMGDMIAEAAVVNGWEGVIINGAIRDSAAVAKLDLGTKALGTNPRKSAKDGKGEKDVPVTFGGATFTPGDHLWSDEDGIVVTSAEHASTFLS
>NZ_CP008889.1|WP_006945550.1|2830375_2831119_+|AraC-family-transcriptional-regulator
MTTAPTLDALRGALGPAVLEMVDHLPGTMFCVKGADGRYLAVNPTFVERTNKRSRGDVVGRRAAELFVPELAERYEEQDARVLSSGKPLFNELELIRASGGPFRWHITAKVPLRDQAGRVVGIASMSQDVGEAAEDDPAMTSLGAVRAYIDAHLDQPVTSQDLARVAGCSVDTLERRSRRVFGRSPRQLVLSSRIDAAREMLTAKELTLAQIADRCGYSDQAAFNRTFTRLVGMPPGRYRRERRTQG
>NZ_CP008889.1|WP_038569698.1|2826454_2830189_-|aldehyde-dehydrogenase-family-protein
MSQITDAPRTPGATTVDTTPSDDAATFAELHDLVEDAVALANRWSDATGAGQTKAEKRTSDQLGALLRDEKGLDLAVKFVDRVARPEDNTAAARELARLSSNEATGFMGKLDAKLLGLGSRLATTMPPVVVPAARTRLRQLVGHLVVDASDPTLAKHLAEAHADGFRLNINLLGEAVLGEAEAARRTEETRKLLARDDVDYVSIKVSCLVSQISTWDAEGTVERALERLRPIYRVANGTASDASSPSSNTGDANADAGQPGGGAANVNRGDIKKKFVNLDMEEYRDLDLTIELFTRLLSEPEFHDLEAGIVLQAYLPDAVPALERLIAFAKERKANGGAGIKVRLVKGANLAMERVEAELHDWKQAPYTSKEDVDANYLRFIERATRADAMEVCRLGVASHNLYDVAMAHLLAEKRGVSEHLDVEMLQGMAPSQARAVKADVGTVLLYTPVVKREDFDVAVSYLIRRLEENAAEQNFLHAMFSHDEGAAERHKYVRDGLVGTGALSAMQDQERRFRESIDAIASTPVGPRRSPERAPIGDFFENTPDSDPALPAVRDWAREAVTRQPAPLTSPQLTSREMVDDVVARGVAAQAGWAGRSNTERAALLREAAREIEKRRGDLVTVAAAEGGKTIDQVDPEISEAIDFARYYADRCEELVTGMASDGARFEPHRLTLVTPPWNFPVAIPIGSVLAALASGSAVVIKPAPQTVGCVEVAMEALWAAGIPRDAAQVVRVEEDDNGRALVAHDDVDTVILTGSIETGRLFAGWRARHAGGPRVFGETSGKNALVVTPAADLDLAAADLMKSAFGHAGQKCSAASLGILVGSVATSKRFREQLVDAVKSLRVGWPSDLGTTMGPVIEPPSGKLLKALTTLEPGETWLVEPKQLDDTGRLWSPGLKDGVKPGSFFHMTEVFGPVLGLMHADTLEEALELQNATQFGLTAGIHSLDEDEVTYWQEHVEAGNCYVNRHITGAIVQRQSFGGWKESVMGPGAKAGGPNYVAQFGTWVPDGVARQGAPIMPRVRDLLEILSPLARNEADREWLHASLRSDAFAWREELGIEADPSSLRAESNVFRYRPQPQVVVRAELGETSADGDVDAVADRTLAEVARLVLGAHLVGSSVYLSWDVALQPALTRLAATGEGRQALVWLNRMGSVESSAQFVTWCRERTRDGEPLRIRMVGADADGETAAALASAPGEDQGASITPLFGEVLSTGRRELLTFLREQAISRTLHRFGHVAPELMR
>NZ_CP008889.1|WP_051806227.1|2824502_2826236_+|serine/threonine-protein-kinase
MSEGWQLGSRYTLERQIGSGAMGQVWVGHDVDDHTLAFKLLRPELADDPGVVARFLQERNLLVGLRSPYVIRVHDLVVEGPRLAIVMDYVAGDSLRALLQRRGNLPPHDVATLGAQIAEGLAAVHGAGVLHRDLKPENVLLAEDPDAMSRAAMSRATTETALPAAASTRTSTDALGTLVPKLADFGVASLVTQTGQVATANVIGTPQYLAPELGDGQPSGRAGDLYALGVTLYEMACGAVPFHADSPVALLRLHADHAPTRPDGIPDAQWVLIAELLAKNPHERPDDAAAVAQRLWAMAPQFAGAPAAPMLSAPPRTSRIVAAGASESSAPIGSPAPMSGAAAVAALPAGAGGAVGAGGVGGVAGPGGPNPADHLGTASATSDTPSGGQHRRSVWLAVTLVAGLALIALVAWLLLRDSSSSHGAAPAPSSSASSRSAQPRDVPLSGALSGGARTASVRVGGSSYDDAVAPLLTDRQACTAAAQFALDRRYDEVAFTVGATDAQPGGTNMQPEGTTTVTVRVDGSAKQTVTLGGKQAKTLRVPVSGARTLNVDTDSIGCSPALDTAPVALVAGTLRTS
>NZ_CP008889.1|WP_038569695.1|2824087_2824384_-|hypothetical-protein
MAIFAVTYTYSDDVAARDAHRPEHRTYLSQVEGMLLSGPLAEPDGALLVIAAPTREDVAERLDRDPFLLEGIVVERTIRPYTPVLGSQAPTFAEHLER
>NZ_CP008889.1|WP_051806225.1|2822888_2824091_-|alpha/beta-hydrolase
MTETPREPAPDGTSGTSFVGTSGLAERADIDETPASEGASSSHKNMSLSNADLPEPNLPPITSVVIDIGDDRVEVFHRDSGPDDQPDNASSDGGVDVPGVNASLAGEQREHAAADAAADPGAADAEPHPEAAPTGRPTYVLVHGLGGSLANWEPLWPFLTEHGRVLALDLAGFGRTSGSNRSAVSDNVDLLAAYLRQLGLSDVVLVGNSMGGMIVAMMTAKHPELVSRLVLVDPVLPLHPQDRPHWSVLVTFSLYMCPPAARRVIPRYAARRGIDRMGVEGVLTVVADPHRVPKWVMRRSVEEVRALAENQDSVPGLVRAANSLVVAAGSPRYRRVLSELRVPVTLVHGERDRLVPVSAARRIAARHPAWAFLEGPGLGHVPIYEAAGWVARCIVGAAAS
>NZ_CP008889.1|WP_051806229.1|2838089_2838458_+|hypothetical-protein
MSHSTMNIRHRAAALVGAVASVGTAGAGLASTASAATGSGAQSTLAAIKFCESSNNYQAQNPSSTASGAYQFLDTTWQGLSAAKGYSKAKYAPASVQDAAALELYNQAGTSPWAASSSCWAT
>NZ_CP008889.1|WP_051806231.1|2838554_2838779_-|winged-helix-turn-helix-transcriptional-regulator
MRNAGHVVSRARIVDDVWGGLDAATSNLVDQVVSHLRRKLDRPFGRHDITTVRGVGYRIIDSAAQLDGVVRRAS
>NZ_CP008889.1|WP_051806233.1|2838835_2839075_+|hypothetical-protein
MRAAHHVAGGGPARLGKGVTDAGVIDAGVTDGGVVERPDGDARRAIQTEGPDAQFVLDEVRGPARQSSQTRGDLGERHG
>NZ_CP008889.1|WP_150112855.1|2839749_2840574_+|hypothetical-protein
MTFASGIALVGVAGAGLASTASAATSTSSSSASSVLAKIKSCESGGNYQAVNASSGASGAYQFLNSTWKGLSAAAGYTTAASAPASVQDAAALELYNQAGTSPWAASSGCWSSMTSAPTTSTSSSSTSASPSTSATSGTTTSTSTKASSASSSTGNSSSTTTSVSNSKSSTASTKAAHPGRTKAHGKPAPAQHGKPGEKAKPQPKLATVKHGKTAPKPAHAKAAPKPHGKDANKALPKAKPVGKHHAKVAPKHLTKPANSLAAHGSHAPAKAAA
>NZ_CP008889.1|WP_051806240.1|2842094_2842955_-|alpha/beta-fold-hydrolase
MHSTTALEATVTTTSGLTSHVTFIPVDDPAAPVLVIRPAFGAPASYYRHLTPALAEAGLASLVVEYPGRETRDGIGRETTYGYDALATGVHESVMTHVRELRPDAPVVLLGHSLGGHVSIFAAALHPDGPAAVDGVILAASASPYWRGYGAPGRVRSFAGTALMATVARAVGYWPGDRLKFWGRQSRVLVQDWSRMARTGRVRPSGAQIDYEAALGAYGGQVLAISLPNDSFAPVGGLEQMLRWVPKARVTRWHSPDDLGHIQWVRRNVDVVPVIAAWVEENVAAR
>NZ_CP008889.1|WP_051806242.1|2843002_2843947_+|hypothetical-protein
METRSVWLVRHGQASFGKSDYDNLSETGHEQAYLLGKHFAAHGVAPSLIVSGSMKRHRQTLAEIAAGAGWQLDDAPATEPTHVTTPAHPRADEPEAPATPPAPASSDRETDRAQHLESTQDAATHAPRKPSRGKPPHPKPDEQPDDAIIAAHAPRVVARGLDERWNELDHRALLTAYKPAYKNMLVLKADMVRTLRPRIAFEETFEKAVDRWSGGQYDHEYPESFEQFTSRTNEALDDLVDAAHEHVVVVTSAGPVCWTAAHLTAGGSLDAWKHFTLAAVNTGVTRITIDRHGPRLLTFNEFTHLEGAGLVTNR
>NZ_CP008889.1|WP_006945484.1|2843970_2844477_+|acyl-CoA-thioesterase
MTAPSDTQLVLSQIMGNQHTNLLGTVHGGNIMKFVDDAAGAVSARFAQGPAVTAAMDEMLFLAPVRVGDVLTVKTQVNWAGRSSMEVGARVETTRWDDRTPPVHVATAFLVMVGVDESGRPRQVPTLEPVTEEEKRRFRAAQIRREHRLAQRAAIRDLGAGEASVERA
>NZ_CP008889.1|WP_051806244.1|2844473_2845166_+|leucine-efflux-protein-LeuE
MTLTFAQLAQFSLGAVLIILLPGPNSLFVATSAAQVSRRAGWQAAAGVFISDSILMIAAVAGAGTLLTGGSLFFRALTLIGGAYLAYLGFGLLRRGVQLLREHRALTRAEATDDSLNPIDTGAGPDDAGTATSPFRRSIATGMLNPKSILFFAAFFVQFVTPGDPHLWVNFGVLAVIMQIISLTYLAAVIAISSRLGHRVAGRPRVVAGAHLAAGTAFCLFAVKLATASF
>NZ_CP008889.1|WP_038569709.1|2845273_2847079_-|long-chain-acyl-CoA-synthetase
MTTSRTRVTLLDVARGALTMTPDVPHVAKHLPSLLLRRSGRAMSIGSVFEGLAERHPQRPFVVADEGRLTYAEANERVNRLAWVLKDAGVRHGDVVGLMSHNSIDMLLVMLATVNIGAVSGLINYNQQGDVLAHSLGVLDARVIVAEPSLLEAVTTCLAGEGSANTAPSSDTGRHADVVGLDELVAQATNAPTAAAQNPPECAQVRGSDKAYYIFTSGTTGMPKASIMSHHRWLQSYSGLGGLGVRLREGDTLYCCLPLYHNNAVTVALGAVLNGGACFAIARKFSVSNFWDDVIRFDATSFVYIGELCRYLLGQPQRDVDRAHRIRVIVGNGLRTDIWAEFQERFGIARVAEFYGASECNIAFINAYNISETAGTCPLPHKVVAYDPETGGAVRDANGRLRQVKVGEAGLLLAKVTKAQPFDGYTDDDATEKKLLRDGFKDGDCWFITGDLVRRQGLNHVAFVDRLGDTFRWKGENVATTEVEAALERLPFVEDCVVYGVEVPGCDGRAGMAAVVLREGEPFDAIAAVALDERLPKYAVPLFVREVDSLEHTSTFKSRKVELRDAGFAGVGDDRVWVLTRDGYVPFYESYPEDVAAGRQP
>NZ_CP008889.1|WP_051806246.1|2847242_2848019_+|LacI-family-DNA-binding-transcriptional-regulator
MNEADATRERVLNAAEDLDYGGPDPLASSLRQGPSGIVGVFAEGPLLNSFSDPFAVSVLDRLTQHLGQNSSGILLIPAQGSDGREVVRRISGIPLDAGVFPLGGHVSAAALDHLRHRRIPLVGTGHPAIDGVLQLTMERAALRTLATYLYDLGHRDVAFVETPQGASRGEGDTTPTANPEATACTDGFLDVFPDVTYPHLRAHRRHLDGRAGRRLTLSTYRCPVPDGVGHVMYVSIRTRTSIRRGGGGQGVCSGRRNA

Crispr_ID: NZ_CP008889_6

• CRISPR_ID: NZ_CP008889_6
• CRISPR_location: 2998656-2998730
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP008889_6

Consensus_repeat	Method
CAAGTGCACCCGGGTGCATCGGG	CRISPRCasFinder

spacers of NZ_CP008889_6

>6.1|2998679|29|NZ_CP008889|CRISPRCasFinder
ACGCAGATGGGGTGACCCAACTCAAACAC

CRISPR arrays and Neighbor proteins around NZ_CP008889_6

CRISPR arrays

The CRISPR arrays of NZ_CP008889_6

>merge|NZ_CP008889|6|2998656-2998730|CRISPRCasFinder
CAAGTGCACCCGGGTGCATCGGGACGCAGATGGGGTGACCCAACTCAAACACCTCCTGCACCCAAGTGCACCCGG

>NZ_CP008889|6|5|2998656-2998730|CRISPRCasFinder
CAAGTGCACCCGGGTGCATCGGG	ACGCAGATGGGGTGACCCAACTCAAACAC
CTCCTGCACCCAAGTGCACCCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008889.1|WP_038569883.1|2997737_2998616_-|hypothetical-protein	unknown	unknown	gnl|CDD|187576
NZ_CP008889.1|WP_051806315.1|2995113_2995809_-|copper-chaperone-PCu(A)C	unknown	unknown	gnl|CDD|377298
NZ_CP008889.1|WP_038569880.1|2996144_2996702_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_167539862.1|2998757_2999840_-|NAD(P)-binding-protein	unknown	unknown	gnl|CDD|168661
NZ_CP008889.1|WP_051806311.1|2993032_2994094_-|Dyp-type-peroxidase	unknown	unknown	gnl|CDD|273606
NZ_CP008889.1|WP_038569891.1|3008593_3009400_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP008889.1|WP_038569889.1|3007670_3008528_+|FkbM-family-methyltransferase	unknown	unknown	gnl|CDD|377448
NZ_CP008889.1|WP_006945026.1|3000681_3001698_-|CoA-transferase	unknown	unknown	gnl|CDD|224717
NZ_CP008889.1|WP_038571971.1|2991066_2992812_-|pyruvate-dehydrogenase	unknown	unknown	gnl|CDD|180614
NZ_CP008889.1|WP_051806305.1|2988847_2989369_-|hypothetical-protein	unknown	unknown	gnl|CDD|379265
NZ_CP008889.1|WP_051806308.1|2989485_2990808_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|274414
NZ_CP008889.1|WP_038569887.1|3006325_3006775_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379228
NZ_CP008889.1|WP_051806322.1|3003430_3004021_-|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_150112826.1|2997313_2997640_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_038569885.1|3004139_3004781_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP008889.1|WP_051806313.1|2994499_2995087_-|copper-resistance-protein-CopC	unknown	unknown	gnl|CDD|377255
NZ_CP008889.1|WP_006945044.1|2999957_3000602_+|hypothetical-protein	unknown	unknown	gnl|CDD|370635
NZ_CP008889.1|WP_038569879.1|2987530_2988523_-|5,10-methylenetetrahydrofolate-reductase	unknown	unknown	gnl|CDD|223757
NZ_CP008889.1|WP_051806327.1|3006898_3007501_-|DUF1648-domain-containing-protein	unknown	unknown	gnl|CDD|377929
NZ_CP008889.1|WP_081873842.1|3001977_3003240_+|hypothetical-protein	unknown	unknown	gnl|CDD|271377

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP008889.1|WP_038569883.1|2997737_2998616_-|hypothetical-protein	gnl|CDD|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.67558e-45
NZ_CP008889.1|WP_051806315.1|2995113_2995809_-|copper-chaperone-PCu(A)C	gnl|CDD|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	6.5167e-32
NZ_CP008889.1|WP_167539862.1|2998757_2999840_-|NAD(P)-binding-protein	gnl|CDD|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	8.83476e-29
NZ_CP008889.1|WP_051806311.1|2993032_2994094_-|Dyp-type-peroxidase	gnl|CDD|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	1.691e-63
NZ_CP008889.1|WP_038569889.1|3007670_3008528_+|FkbM-family-methyltransferase	gnl|CDD|377448	pfam05050, Methyltransf_21, Methyltransferase FkbM domain. This family has members from bacteria to human, and appears to be a methyltransferase.	2.25158e-23
NZ_CP008889.1|WP_006945026.1|3000681_3001698_-|CoA-transferase	gnl|CDD|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	1.22041e-96
NZ_CP008889.1|WP_038571971.1|2991066_2992812_-|pyruvate-dehydrogenase	gnl|CDD|180614	PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.	0
NZ_CP008889.1|WP_051806305.1|2988847_2989369_-|hypothetical-protein	gnl|CDD|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	9.11983e-06
NZ_CP008889.1|WP_051806308.1|2989485_2990808_-|ABC-transporter-permease	gnl|CDD|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	3.24592e-13
NZ_CP008889.1|WP_038569887.1|3006325_3006775_+|GNAT-family-N-acetyltransferase	gnl|CDD|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.30686e-12
NZ_CP008889.1|WP_038569891.1|3008593_3009400_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.04132e-19
NZ_CP008889.1|WP_051806313.1|2994499_2995087_-|copper-resistance-protein-CopC	gnl|CDD|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	9.81263e-26
NZ_CP008889.1|WP_006945044.1|2999957_3000602_+|hypothetical-protein	gnl|CDD|370635	pfam09726, Macoilin, Macoilin family. The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.	0.00560068
NZ_CP008889.1|WP_038569879.1|2987530_2988523_-|5,10-methylenetetrahydrofolate-reductase	gnl|CDD|223757	COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism].	3.65881e-07
NZ_CP008889.1|WP_051806327.1|3006898_3007501_-|DUF1648-domain-containing-protein	gnl|CDD|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	1.65527e-07
NZ_CP008889.1|WP_081873842.1|3001977_3003240_+|hypothetical-protein	gnl|CDD|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	4.34299e-41

Protein sequences

>NZ_CP008889.1|WP_038569883.1|2997737_2998616_-|hypothetical-protein
MATSLLFGAGDLGTQIGFDLARAGDDVVALRRHADRVPEPLTGISCDLGAGVDAVRAALEPLTERGGWARGPQSVVVCLTPDARGEEAYRATFLEAAGTALAAMAALGWAPERALFVSSTAVCASGGLVDENTPPAPKTPTARVLAGAEQFFLSALPASTRGIVVRPSGIYGPGREWFVNRVSEGDVGDPSRTTHRVHRDDLARAITHLLTMTAEPDALYLVTDDAPASAGEVATYLAERLDADADPSWRGEWSASRRLDNSRLRRTGFAFDFPTYREGYAAVLDGDGVRHS
>NZ_CP008889.1|WP_150112826.1|2997313_2997640_+|hypothetical-protein
MASFTPGVDRWLRHVGASIIAAGALFSAPFVLWALAYKTYIYAETGHWYAWGAPTQIGVCNRIISYALVVLGVIGITFLGAGHVMALVRRRRAAAPRSHSPIIGAIRR
>NZ_CP008889.1|WP_038569880.1|2996144_2996702_-|hypothetical-protein
MELGQKQQVRWVRSLLVAALTACSAGAAHVAGGGHRAPVLLLICLTVIGTPIMHAVSTRRWSFAQLVGVMAVAQLALHAAMSTLMPASMTMPHHASAADVSADGTSATMAASHIGMTWLFAALLAYGEKALAWTIRVLVPQIQLAPFGEFPTARAAFDDIRAPRLVTLHAPRASRAPPVSFVLSH
>NZ_CP008889.1|WP_051806315.1|2995113_2995809_-|copper-chaperone-PCu(A)C
MNLTITSATRRTRRLTAVALLTLAAPAALTACSSDDSGTSGDSKSAASSAPATSTSATSSADATMASRITPSDIWAKAADSGMSAAFGTLKNTGTKPIVITGARGDAGPVQLHVTQKTATGMEMKETKSFTVPAGGSLELKPGSSHLMFMNLSHALKAGETQKLTVTFEDGSHTDVRFPVRAYDGAKEKYAGSGHAQHSSEATHSGDAHSSGMGSHSAGSTMPGMSTTPSH
>NZ_CP008889.1|WP_051806313.1|2994499_2995087_-|copper-resistance-protein-CopC
MKKTYAALALATTIAFAPAASAHDELTGTTPKNGATVTSAPSSLELTFAEKPLAVGNQISVKAPDGSTSKATPKVDGSTVSAPFAGHGDGAYTVTWRVVSSDGHPISGSYTFTLKGGTASTGAPSTAASSSGGAASSSPRATATTTFDSPAPSPAAEAHQDADGSAAWSVIAAVAGVVVVVGLGVALMARRRRGQ
>NZ_CP008889.1|WP_051806311.1|2993032_2994094_-|Dyp-type-peroxidase
MPSGAPRQSGVTTQPGAHAHWIGLDLARDAMKDDLRRALVVVDDTASRFVAGSTPLPDVAHELAFDAGGVAIAVGLGPRVFTLRGMRAKAPSWLAPIPTMPIDRFEKPWDQTDLVIQIDAANPVGVSHAATQLVSALKGIATPRWQQRGFHAGARPSDAGVTRNLFGQLDGQEQPNVDGNEADRVWNAATTDAPWMEGVTSMVIRRIRMDVDVWQTLDRASQENAIGRRLTNGAPLTGASPHDPIDLEKTDELGLSVINPAAHVPRARPAKTGERILRRPYNYEDARADGTSDRGLIFVAFCADVAAQFVPIQRRLAEADLLNTWTTPIGSGVYLLPSAPRPGKYLGQNIVEA
>NZ_CP008889.1|WP_038571971.1|2991066_2992812_-|pyruvate-dehydrogenase
MKLADQIVSQLQAAGVRRIYGIVGDSLNPIVDAVRRTGGSAKGGIDWIHVRHEEVAAFAASADAQVTGELAICAGSCGPGNLHLINGLYDANRSGAPVLAIASHIPSAQIGQDYFQETHPDRLFTECSVYSELISTPVQSPRVVQAAIQHAVTLKGVSVITLPGDIADEPATSDVTPVAVPEPGVLVPPAGVVEKLAAEINAAEKVAIFAGAGAAGAHDELMRLASKAKAPVGHSLRGKDFVQYDNPFDVGMTGLLGYGAAAEGIEDADLMIMVGTDFPYDQFLPDTRTVQIDARAEVLGRRTAVDLPIQGDVKATLDAVLPLLEEKKNSKFLDKTLKKHEKLMDKAVGAYTRKVEKHTPIHPEYAASLLNEALADDAIVTADTGMCNVWSARYIQPTGRSRLIGSMLHGSMANALPQAIGAQFAHPDRQVVAMCGDGGLSMLMGDMLTARAYDLPLTLAVFNNSTLGMVKLEMLVDKLPDFGVDVPEVNYAAIAQAMGWHAIRVENPKDLDKAYAEALSHKGPSLVDIVTDPMALSIPPKITSDQVFGFATAMSRIVLNGGAGEAVAMGRSNLRNIPRSW
>NZ_CP008889.1|WP_051806308.1|2989485_2990808_-|ABC-transporter-permease
MAQRLDESAPAQTTAREQIRQFAPRLIVLALMCVLVQGLMGLSYMGAFGKPKAKKAPFIVVSHTEGNAGYIANKLNAIDGQPVLATISTDEKAAIEQVKKDKAVGVYVFNPSKTEKNPKDTLYYASAQGASRAQVAQTVATKTSQNAKRGLVTHDVVKAAPDDARGTAAFYLVLAWMVGAYLLPASMTTVVGNRSHTAIGARMRLLLFAGYAVLSGIVGTLVAQYVLDALPGPFWKMSAMGMALVFAVSTFTFGLTSAFGSLGVGLAILLFVILGNPSAGGAFAYDVLPEPWRSVGPYLPNGAGVDAVRSIAYFGGVDLTRPLWVVAVWGVIGLWILFMIGNNTYRFAPGGVDASDDDGVGAVGEFVEHQLGHHPPHRQEGERGPGYERESRERASEAASNDDVDGRGDGGDRTAELPLRRDRRERHDTADHPGDGDAQA
>NZ_CP008889.1|WP_051806305.1|2988847_2989369_-|hypothetical-protein
MADCALELSFDKRSATAVEEQWRALRLLGVPSQLDHRGMTNAPHLSLVVASAITDDVVARAREFFSAALPIRLDVRGLITFGTGSRVTLAHLAEPPRAVVDEVTALRQASPLVRHPVWTPHVTLGRRIPRDRLGEAMAAVDARGGEPAPDVLVADRLRWWDPATATIDVLAQA
>NZ_CP008889.1|WP_038569879.1|2987530_2988523_-|5,10-methylenetetrahydrofolate-reductase
MSAHAERPFADLVADDRELLLFAMTPPRATTSAERAQEIADATLTRLDGLDVDALILYDLDDESDRTDDDRPFPYLETMDPADFLAGPLAGWDGNAIVYRCVGKYDEAQLRDFLTSRRQGDATVFVGASSSDKPVRTSLSRAVDLAAEHEHVTLGGVVIPERHARTTAEHERLLRKQESGAAFFVSQVVYDTGEAKNTISDYAYACAERGIRPARLIFTLSLCGSEKTLDFLEWLGVDVPRWVGNELRRSHDTLEASYEHCLAAAHELARFCRYLDVPFGFNVESVSTRRVEIDATVQLARDIARVLERGAGNEAEVPPQERQPQSAFGA
>NZ_CP008889.1|WP_167539862.1|2998757_2999840_-|NAD(P)-binding-protein
MVVRRVAVVGGGVAGLTLAAALDPARFDVTVHEAQPDRRTGAALGLWPDALRALAELGVQLGGGHGVSGAAPGRARGVGVSSGVGVVRRCERVDLHTMTGRRLLRAPAPPVAQVRREHLMVALRAVAPAPVAHRVDDPRELDADVVVGADGVRSRVRGTVDPWRAERRATPWVTLRGIAPALEGLDGTNPFAREFWGAGRLFGDAPVSGGRYWFTAHAMASAQGDTPDHRVGVMRGAYAPEQLDVMAVVDEARRRFAGAAPTVRAALAAADDTTVAARLWVAPPMRRYVQGRFVVIGDAAHGSLPNLARGASDAIIDAVTLARVLSADGGLGRWQRRRWPVTQAARLGASAVMAVATGWG
>NZ_CP008889.1|WP_006945044.1|2999957_3000602_+|hypothetical-protein
MRFTTTTTATVAALSLTALTACGSDSSNSASSATSAASGAAASATSSASGDASSNSSASGSGEASSSSSNAKPIDCPTENTRKFAKTRFATDIGLTAGTFHRYLWKPYKAGTFQKGADGRTKALIKGGATAALDLKLLNNAVKNAQANPTLCKTIAQPLGTAVENVKNMKGDLTSGNFASIMAANTALSQIMSGSQQQGIKIDETTDESKQNEG
>NZ_CP008889.1|WP_006945026.1|3000681_3001698_-|CoA-transferase
MKPLEAVTVVELASLAPAPFGCMMLADLGAHVTRVERPGSGALDVPTAALDRGKTTIVADLKTPDGLAAVRELASAADVFVEAYRPGVAERLGVGPDDLLALNPRLVYVRMTGWGQHGPLAQTAGHDINYLALSGMLYPLARPGERPNPPTNVLADFAGGGMLLANGVLAALVARATTGRGQVLDVAMVDGASLYSTFLRGLHAVGLWSGEPGTNLLDGGAPFYDTYTCADGRHVAVGALEPQFFAALVDGLGLDATTMPAQTDVTGWSRWREVLTATFATKTRDEWAQLFDGTDACVTPVLTPWEAPHHPHAVGREAFVDVDGVTMPAPAPRFGGSD
>NZ_CP008889.1|WP_081873842.1|3001977_3003240_+|hypothetical-protein
MWANLGMSLLAFAGALVVLQPLGAPGMGVGAALSALVVGTLVGTAGVSAMALASSQQGQPAMVMLRGLFGGRLSYVPSVLNMVQLVGWGTFEMVTTAFAVKTLWDVPSWPVIGVIGLVTITLAIYPLHWVKVLRKYVTVAVIVVLVYLATQLATRDLPAYHGHGWDGWMIAVDAIIGLCVSWVPVAGDYARHSTSHRAAVIGSYVGYSVTQIAVYCIGMVALVIAGGDGDKVFSIFLGITGGTLCFWVLTLREIDACFVDVYSPTVSAQNMLPRVDRRLISTALGIISMVLAWSIDIYGFATFLSLIGSVFAPLLGVFLVDYYAFGGRRRWNTSVDAPGRPLMLLPWLAGFAMYQLISPGELGWWSRMWHDIAGTLHFTAPSWMSASLTSFLTAVVLTAVVDGVTRRGAEANTKVQGGSR
>NZ_CP008889.1|WP_051806322.1|3003430_3004021_-|Pr6Pr-family-membrane-protein
MTLRPGARAAFAFNAALAWIGFVLVCVLSATDQYAHVTPAPHEYGVHPGGFAGAISRLFDTLSYFTVWSNVIVAISCTLVAVAPYADTRWRRVVRLDALIMITVTAIVYALLLAPGSHPTGWDLVTNPWQHIAVPLVTVIVWLVWGPRGRIDRRTVASCFAIPGVWIVYMLVRGAVVDAYPYPFVNVDAHGTARWP
>NZ_CP008889.1|WP_038569885.1|3004139_3004781_-|hypothetical-protein
MPPSHPDVSATAVEPSTIMAMTDATPSSAQPAQAVLREAVHERIAELFTRDSAVFGRDLAPYRGHAQRVAALVMGQVDMRPDWVEPVAVASYYHDAAIWFEHTWDYLPGSESLAAQELSRTGHEGEAALVTAMIDEHHRVRPARNPHPLVEATRRADATDVYRLPLPPHVSRDDYRAMLKRFPDNGMHLMLGRGFVMGLKERKRLNPMPMVKL
>NZ_CP008889.1|WP_038569887.1|3006325_3006775_+|GNAT-family-N-acetyltransferase
MNTDYELLDSAPDLETYLELRRISGLTPRTAEQGAPALTNSWAWVTVRHRASGDVVAMGRVIGDSGWYFMVADMATSPEHQRQGLGRAILTRLLARIEHDAPSGAYVTLMADAPGRPLYESLGFVETAPRSVGMRLERRRPQPSDNSST
>NZ_CP008889.1|WP_051806327.1|3006898_3007501_-|DUF1648-domain-containing-protein
MTQTSRWDTGFPDPEQLRETARQARQLPTEPMSRGVRAIVGGAVAVWLVTVLVVYSTLPERVPTHWDGSEPDDWSSRAGALVAFVVGPIAIGAVLRLVTTLVLRWPQGINAPNKEYWLQTPQRLRHFERLVREDLMLIGALTTLLFAAISVMTGVAAHREGGELPGVFFAVIMIAFIAGILGLVVRMLLGRRYQPSDEAV
>NZ_CP008889.1|WP_038569889.1|3007670_3008528_+|FkbM-family-methyltransferase
MSALRELTQPSRLTEVVDIGANPLVDTPPYLPMLRDGLCRVTGFEPQPDALARLERAAGPHERYLPAAIGDGERHTLHVCAESGFTSLFEPDAAQLALLTDFPRLAEVIDRVDVDTTRLDDITEIELLDHLKIDVQGAELMIFRNGRERLRTATSIQLEVNFHRLYVDQPTFADVDVELRAQGFVPHAFVATKTWPLAPVQWADRDAPTDEAHARQLVEADMLYVRDLARLDDAETVDDEALKHLALVMHHVYDQHGVALLALRELIRRGALDPSAEAAYRSHPV
>NZ_CP008889.1|WP_038569891.1|3008593_3009400_-|alpha/beta-hydrolase
MNFVEHGSGTPIVLLHGFDADHRLVLPLESAFTAGAAREDVATTGWRRLYPDLPGFGSTPIGDAASTDDVVERVLAFVDEQIGDAPFAILGDSFGGMVARAVAHRRREQVLGLGLLAAVFVADSDARTTPEQTVLRRDDDAVAQVRDKADDYTAVAVVQSDDTARHFLEFAAPGAELADKNAMKKLAENYELGEQPEEEAPFEKPTLILTGRQDHLVGFGDALRHLEHYPRATFATLDGAGHNVHFERPDLVSALVADWLTRMRDLPA

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	8699-8729	6	0.806
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	8699-8729	6	0.806
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	8699-8729	6	0.806
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	8699-8729	6	0.806
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	8699-8729	6	0.806
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	881466-881496	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	856548-856578	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_LR723679	Arsenite-oxidising bacterium NT-25 plasmid 3	128376-128406	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	824996-825026	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	866618-866648	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	922768-922798	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	463075-463105	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	876041-876071	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	863521-863551	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	426917-426947	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1219748-1219778	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1127294-1127324	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	543549-543579	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	789126-789156	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	59142-59172	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1652496-1652526	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	142911-142941	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1026244-1026274	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	887686-887716	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	996805-996835	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	771697-771727	7	0.774
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	856551-856581	7	0.774
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	260747-260777	7	0.774
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	260747-260777	7	0.774
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	260747-260777	7	0.774
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	260747-260777	7	0.774
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	260747-260777	7	0.774
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	390660-390690	8	0.742
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	MN175603	Microbacterium phage Tyrumbra, complete genome	13053-13083	8	0.742
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	MH271312	Microbacterium phage RobsFeet, complete genome	13977-14007	8	0.742
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	914732-914762	8	0.742
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1266312-1266342	8	0.742
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1424734-1424764	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	390660-390690	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	MN175603	Microbacterium phage Tyrumbra, complete genome	13053-13083	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	MH271312	Microbacterium phage RobsFeet, complete genome	13977-14007	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	914732-914762	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1266312-1266342	8	0.742
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1424734-1424764	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	390660-390690	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	MN175603	Microbacterium phage Tyrumbra, complete genome	13053-13083	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	MH271312	Microbacterium phage RobsFeet, complete genome	13977-14007	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	914732-914762	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1266312-1266342	8	0.742
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1424734-1424764	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	390660-390690	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	MN175603	Microbacterium phage Tyrumbra, complete genome	13053-13083	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	MH271312	Microbacterium phage RobsFeet, complete genome	13977-14007	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	914732-914762	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1266312-1266342	8	0.742
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1424734-1424764	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	390660-390690	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	MN175603	Microbacterium phage Tyrumbra, complete genome	13053-13083	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	MH271312	Microbacterium phage RobsFeet, complete genome	13977-14007	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	914732-914762	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1266312-1266342	8	0.742
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1424734-1424764	8	0.742
NZ_CP008889_6	6.1|2998679|29|NZ_CP008889|CRISPRCasFinder	2998679-2998707	29	NZ_CP046774	Vibrio alginolyticus strain 2014V-1011 plasmid unnamed1, complete sequence	31546-31574	8	0.724
NZ_CP008889_6	6.1|2998679|29|NZ_CP008889|CRISPRCasFinder	2998679-2998707	29	NZ_CP014093	Vibrio diabolicus strain FDAARGOS_96 plasmid unnamed, complete sequence	242-270	8	0.724
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	MF141540	Mycobacterium phage Avocado, complete genome	37152-37182	9	0.71
NZ_CP008889_2	2.1|873991|31|NZ_CP008889|PILER-CR	873991-874021	31	KR080198	Mycobacterium phage Cambiare, complete genome	37247-37277	9	0.71
NZ_CP008889_2	2.2|874052|31|NZ_CP008889|PILER-CR	874052-874082	31	NZ_LR027556	Epibacterium mobile isolate EPIB1 plasmid 4, complete sequence	22209-22239	9	0.71
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	499918-499948	9	0.71
NZ_CP008889_2	2.3|874113|31|NZ_CP008889|PILER-CR	874113-874143	31	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	335899-335929	9	0.71
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	499918-499948	9	0.71
NZ_CP008889_2	2.4|874174|31|NZ_CP008889|PILER-CR	874174-874204	31	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	335899-335929	9	0.71
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	499918-499948	9	0.71
NZ_CP008889_2	2.5|874235|31|NZ_CP008889|PILER-CR	874235-874265	31	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	335899-335929	9	0.71
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	499918-499948	9	0.71
NZ_CP008889_2	2.6|874296|31|NZ_CP008889|PILER-CR	874296-874326	31	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	335899-335929	9	0.71
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	499918-499948	9	0.71
NZ_CP008889_2	2.7|874357|31|NZ_CP008889|PILER-CR	874357-874387	31	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	335899-335929	9	0.71

1. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
accggcgcgcgcttcgatggcacga-tcaccg	Protospacer
  *****.*************.*** .**** 

2. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
accggcgcgcgcttcgatggcacga-tcaccg	Protospacer
  *****.*************.*** .**** 

3. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
accggcgcgcgcttcgatggcacga-tcaccg	Protospacer
  *****.*************.*** .**** 

4. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
accggcgcgcgcttcgatggcacga-tcaccg	Protospacer
  *****.*************.*** .**** 

5. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
accggcgcgcgcttcgatggcacga-tcaccg	Protospacer
  *****.*************.*** .**** 

6. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

7. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

8. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_LR723679 (Arsenite-oxidising bacterium NT-25 plasmid 3) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
cgaaggttctcgtcgaagacctcgaccacca	Protospacer
   * **** *****.*************.*

9. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

10. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

11. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

12. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

13. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

14. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

15. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

16. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

17. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

18. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

19. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

20. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

21. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

22. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

23. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

24. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

25. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

26. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

27. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.774

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
gtgccggtcgcgtcgaagacctcgaccagca	Protospacer
.*  ** ********.************ .*

28. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 7, identity: 0.774

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
gacggcgtgcgcctcgatggcgtga-tcactg	Protospacer
 .**********.*********.** .***. 

29. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 7, identity: 0.774

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
gacggcgtgcgcctcgatggcgtga-tcactg	Protospacer
 .**********.*********.** .***. 

30. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 7, identity: 0.774

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
gacggcgtgcgcctcgatggcgtga-tcactg	Protospacer
 .**********.*********.** .***. 

31. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 7, identity: 0.774

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
gacggcgtgcgcctcgatggcgtga-tcactg	Protospacer
 .**********.*********.** .***. 

32. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 7, identity: 0.774

cgcggcgtgcgcttcgatggcgcgagccacc-	CRISPR spacer
gacggcgtgcgcctcgatggcgtga-tcactg	Protospacer
 .**********.*********.** .***. 

33. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
gaaggcgtgcgcttcgacggcgcgaacgggc	Protospacer
 . **************.*******.* . *

34. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to MN175603 (Microbacterium phage Tyrumbra, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

35. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

36. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttcgacagcgcgtcgcgca	Protospacer
 ****************..*****   *.* 

37. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

38. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

39. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
gaaggcgtgcgcttcgacggcgcgaacgggc	Protospacer
 . **************.*******.* . *

40. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to MN175603 (Microbacterium phage Tyrumbra, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

41. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

42. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttcgacagcgcgtcgcgca	Protospacer
 ****************..*****   *.* 

43. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

44. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

45. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
gaaggcgtgcgcttcgacggcgcgaacgggc	Protospacer
 . **************.*******.* . *

46. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to MN175603 (Microbacterium phage Tyrumbra, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

47. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

48. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttcgacagcgcgtcgcgca	Protospacer
 ****************..*****   *.* 

49. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

50. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

51. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
gaaggcgtgcgcttcgacggcgcgaacgggc	Protospacer
 . **************.*******.* . *

52. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to MN175603 (Microbacterium phage Tyrumbra, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

53. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

54. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttcgacagcgcgtcgcgca	Protospacer
 ****************..*****   *.* 

55. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

56. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

57. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
gaaggcgtgcgcttcgacggcgcgaacgggc	Protospacer
 . **************.*******.* . *

58. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to MN175603 (Microbacterium phage Tyrumbra, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

59. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
cgcggcgagcgcttcgatggcgtcggtgagg	Protospacer
******* **************. .*. *  

60. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttcgacagcgcgtcgcgca	Protospacer
 ****************..*****   *.* 

61. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

62. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ttcggcatccgcttcgatggcgcgaccgtcg	Protospacer
. ****.* **************** *  * 

63. spacer 6.1|2998679|29|NZ_CP008889|CRISPRCasFinder matches to NZ_CP046774 (Vibrio alginolyticus strain 2014V-1011 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

acgcagatggggtgacccaactcaaacac	CRISPR spacer
tgccagatggcgttacccaactcaaaagt	Protospacer
   ******* ** ************ ..

64. spacer 6.1|2998679|29|NZ_CP008889|CRISPRCasFinder matches to NZ_CP014093 (Vibrio diabolicus strain FDAARGOS_96 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

acgcagatggggtgacccaactcaaacac	CRISPR spacer
tgccagatggcgttacccaactcaaaagt	Protospacer
   ******* ** ************ ..

65. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to MF141540 (Mycobacterium phage Avocado, complete genome) position: , mismatch: 9, identity: 0.71

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
cccttcttcgcgtcggagaactggaccacgg	Protospacer
 .* . ************* ** ****** .

66. spacer 2.1|873991|31|NZ_CP008889|PILER-CR matches to KR080198 (Mycobacterium phage Cambiare, complete genome) position: , mismatch: 9, identity: 0.71

atcacgttcgcgtcggagacctcgaccacta	CRISPR spacer
cccttcttcgcgtcggagaactggaccacgg	Protospacer
 .* . ************* ** ****** .

67. spacer 2.2|874052|31|NZ_CP008889|PILER-CR matches to NZ_LR027556 (Epibacterium mobile isolate EPIB1 plasmid 4, complete sequence) position: , mismatch: 9, identity: 0.71

atgtccgacgaggtatctgagcagaccgagc	CRISPR spacer
cgcgccgacgaggtgtttgagcagaccggaa	Protospacer
    **********.*.***********.. 

68. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttagatggcgccgcgggcg	Protospacer
 ************* ******** .   .* 

69. spacer 2.3|874113|31|NZ_CP008889|PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
accggcgggcgcttcgatggcgcgctgggcg	Protospacer
  ***** ****************    .* 

70. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttagatggcgccgcgggcg	Protospacer
 ************* ******** .   .* 

71. spacer 2.4|874174|31|NZ_CP008889|PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
accggcgggcgcttcgatggcgcgctgggcg	Protospacer
  ***** ****************    .* 

72. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttagatggcgccgcgggcg	Protospacer
 ************* ******** .   .* 

73. spacer 2.5|874235|31|NZ_CP008889|PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
accggcgggcgcttcgatggcgcgctgggcg	Protospacer
  ***** ****************    .* 

74. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttagatggcgccgcgggcg	Protospacer
 ************* ******** .   .* 

75. spacer 2.6|874296|31|NZ_CP008889|PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
accggcgggcgcttcgatggcgcgctgggcg	Protospacer
  ***** ****************    .* 

76. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
ggcggcgtgcgcttagatggcgccgcgggcg	Protospacer
 ************* ******** .   .* 

77. spacer 2.7|874357|31|NZ_CP008889|PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.71

cgcggcgtgcgcttcgatggcgcgagccacc	CRISPR spacer
accggcgggcgcttcgatggcgcgctgggcg	Protospacer
  ***** ****************    .* 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1630055 : 1638470	8	Bacillus_phage(28.57%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP008889|1630055:1638470|DBSCAN-SWA
CTCAGTCCTCCTTGAACTGGGTCGCGTGCAGCTGGGCGTAGAGCCCACCGGCGGCGAGCAGCTCCCGGTGCGTGCCGGTCTGCACGACGCGGCCGGCCTCGAGGACCACGATGACGTCCGCGTCGCGCACGGTCGAGAGGCGGTGGGCGATGACGAACGACGTCCGCCCGACGAGCGCGTTCGCGAGTGCCGCCTGCACCGCGGCTTCTGACTCGCTGTCGAGGTGCGCGGTCGCCTCGTCGAGGATGACGACGTCGGGCGCCTTGAGCAGCAGCCGTGCGATGGCGAGGCGCTGCTTCTCCCCGCCGGAGAGGCGGTGTCCGCGATCGCCGACGACGGTGTCGAGCCCGAGCGGCAGCCGCTCGACGAGGCTCCACACGTGGGCGGCACGGAGGGCGCTTTCCAGGTCGTCGTCGGTGGCGTCGGGGCGGGCGTAGAGCAGGTTGGCGCGCACGGTGTCGTGGAACATGTGCGCCTCCTGCGTCACGACGCCGATGCGGTCGCGGACGGAGGCGAGGCTCGCCTCGCGCAGGTCGAGCCCGCCGACGCGCACGGCACCGGACGTGGGGTCGAACAGACGCGGCACGAGGTTCGTCAGCGTCGTCTTGCCTGCGCCACTGGGCCCGACGAGCGCGACGAGCGCCCCGGCGGGCACGTCGAGGTCGATGCCGCTCAGCACGTCCTCTCCCCCGCGTCTGTCCCCCGTCACGTTCGCCTCGAGGGATTCGAGCGAGACGACGTCGGCGTCCGGGTAGGCGAAGGTGACGTCGTCGAACCTCACGCCCAGTGGCCCGTCAGGAAGCGCCCGGGCGGAGGGTGATTCGCGCACGAGCGGTTCGAGATCGAGCACCTCGAAGACGCGCTCGAACGAGACCATCGCGGCCATGACGTCGACGCGGACGTTCGACAGCGCCGTCAGTGGTGCGTAGAGGCGCCCGAGCAGCGCTGCGAGCGCGAGCAGGGTGCCGACCGTCATCGCGCCGTCGACCGCGAGCACCCCGCCGAGGCCGTAGACGAGCGCGGTCGCGAGGGAGGCCATGAGGGTGAGCGCGACGAGGAACATGCTCCGCTGCGCGGCGATCGAGACACCGATGTCGCGCACGCGTGCGGCGCGGGCGTCGTACTGCGCCGATTCCTCCTCCGGGCGCCCGAAGAGCTTGACGAGCAGCGCACCCGCGACGTTGAACCGCTCCGTCATCCGCGCGCCGAGTTCGGCGTTCAACGTCATCTGCTCGCGCGTCAGACCCGCCAGACGGCGGCCGAGGAAGCGCGTCGGCAGCAGGAACAACGGCACGAGGACGAGGGCAGCCAGCGTCAGCTGCCATGACAAGGACGTCATCGCGACGAGCAGCACGACGAGGCTCACGGCATTGCTGACGACCGTCGACAACGTCGTCGTGAACGCCTGCTGCGCACCGACGACGTCAGAGTTGATGCGCGTGACGAGGGCACCCGTCTGCGCCCGCGTGAAGAACGCGATGGGTTGGGCGAGCACGTGGCGGAACACGTCGGCGCGCAGGTCGAAGATGAGACCCTCGCCGAGGCGCGCCGACAGCCAGCGCTGCGTGATCGTGACGCCCGCGCTGAGCACGGCGACGAGCGCGACGGCGAGTGAGAGCCACACGACGACGTCGCGATGTCGCGGCACGACACCGTCGTCGATGATGTGCTTGAGCAGCAGCGGTGACGCGACGACCATGACGGCGTCGAGCACGATGAGGACGAGGAACGCCGCGATCGTGCGGCGGTAGCCGCGGGCGTAGCCCGCCACGCGGCGCACCGTGCCGGGGGCGAGACGCTGATCCTTGACGCTCGAGTCGCGTGACATCGAGCGCATCATCTGCCAGCCGGCGCCCATGGACATGTGAGCTCCTCAGGTCAGCGAGATGAGGTCGGCGTAGTCGGGGCCCCACAGATCCTCGACGCCATCGGGCAGCAGCAGGATGCGTTCGGGTTCGAGAGCCTCGACGGCGCCGTCGTCGTGGCTGACGAGGACGACCGCGCCCTCGTAGCCGCGCAGCGCGCCCAGGATCTCCTCGCGGCTGGCCGGGTCGAGGTTGTTCGTCGGTTCGTCGAGCAGCAGGACGTTGGCCGCGGACACGACGAGCAGCGCGAGCGACAGACGCGTCTTCTCACCACCGGAGAGCACGCCGGCTGGCTTCTCGACGTCGTCGCCGGAGAACAGGAACGAGCCGAGCACCTTGCGCACCTCGGTCTCGCCGAGGTCGGGCGCGGCGGACTTCATGTTGTCGAGGACGCTGCGCTCGACGTCGAGGTTCTCGTGCTCCTGCGCGTAGTAGCCGATCTTCAGCCCGTGGCCGGCGATGATCCGGCCTGTGTCGGGTGCGTCGACGCCGGCGAGCATCCGAAGCAGCGTCGTCTTGCCCGCACCGTTGAGACCGAGGACGACGACCTTCGAGCCGCGGTCGATGGCGAGGTCGACGTCGGTGAAGATCTCGAGCGATCCGTACGAGCGCGAGAGCCCCTCGGCCATGAGCGGCGTCTTGCCGCACGGCGACGGCTTCGGGAAGCGCAGCTTCGCGACCTTGTCCTGCTGACGCTCGCCCTCGAGGCTGCCGAGCAGGCGCTCGGCGCGCTTGGCCATGTTCTGCGCCGCGGTCGCCTTCGACGCCTTCGCGCGCATCTTGTCGGCCTGCGCCATGAGCGCTCCGGCCTTCTTCTCCGCGTTCTGACGCTCGCGCTTGCGACGCTTCTCGTCCTGCTCACGCGCCTGCAGGTAGGCCTTCCAGCCGACGTTGTACTGGTCGAGCTCGGCGCGGTTGGCGTCGAGGTGGAAGACCTTGGTGACCACGGCGTCGAGCAGTTCGACGTCGTGGCTGATGACGATGAGCCCGCCCTTGTACGCCTTGAGGTAGTCGCGCAGCCAGTGGATCGAGTCGGCGTCGAGGTGGTTGGTCGGTTCGTCGAGCAGCAGCGTCTGCGCGCCGGAGAACAGGATGCGCGCGAGTTCGATGCGGCGTCGCTGACCACCCGAGAGCGTGCGCAGCGGCTGGGTGAGGATGCGCTCGTCGAGGGCGAGGCTGCTCGCGATCGACGAGGCCTCCGACTCCGAGGCGTACCCGCCGGCGGCGGTGAACTCGGCGTCGAGGCGCGTGTAGCGCTTCATCGCCTTCTCGCGCACGGCGTCGTCCTCGGAGGCCATGTTCGTCTCGGCGGTGCGCAGGTCGCGCGCGATGGCGTCAAGGCCGCGCGCGGACAGGATGCGGTCGCGGGCGAGGACGTCGAGGTCGCCGGTGCGTGGATCCTGCGGCAGGTAACCGACCTCGCCGGAGGTGACGACGCGGCCCGCTGCAGGGATGCCGTCTCCGGCGAGCACCTTCGTCAGCGTCGTCTTGCCGGCACCGTTGCGCCCGACGAGGCCGACGCGGTCGCCCGGGGCGACACGGAACGTCGCGTTCTCGAGCAGGATGCGCGAGCCGGCGCGCAGTTCGATGCCTTCGGCGGTGATCACGGGTGAAATCGCTCCTTCAGGGGCGGCAGGTGCGTCGAGGTGGGCCGACGGCGGTGTGGGGCGGCGTCGGGACGCGCAGCGGCGAGGGCGCTGCGGCGGGGAGCCAACCCACGTATTCTACGAGAGATGGTGGGAGGCGGACGCAGCGTCCGCCTCGACAGACGGAGGCTCTCTTGACGTTCAACGACAACGCGCAGCTCGACACCTCGCAGGTGACCTCGGGCGGCTCAGGTGGCTTCGGTGGCGGTGGCATGGGCGGGGGCCCGGTCGTCGGCGGCATCGGAGGTCTCATCCTCATGCTCATCTTCGCCCTTTTCGGCGGAAACCTCACCGGCGGGTCGGACAGTTCGGGCGGCGGCAGCACCGGCGCATCGGGCAGTTCGTACGGCTCAGGCCTCAACGGCTACGCCCAGGACACGCAGGACGTGTCGGGTTCGAATGACTCCGTCGCGCAGGCGATCGAGCAGTGCAAGACGGGTGCGGACGCCAACCGTGACGACACCTGCCGCATCGTCGGCACCGTCAACGCGGTGCAGGACTACTGGGGCACCGCGCTGCCGCAGTTCACGAACGGCCGGACGCAGTACGAGAACGTCCCGACCGTGATCTTCAGCGGGCAGACGTCCTCGGGCTGCGGTACGGCGAGCTCGCAGATGGGCCCGTTCTACTGCCCGAGCGACCGCAAGGTCTACATCGACGCCGCCTTCTTCCAAGAACTGACGAACAAGTACGGTGCCGATGGCGGCGCCCTGGCGAAGGAGTACGTCGTGGCCCACGAGTACGGCCACCACGTGCAGGACCTGCTCGGTGCGCTCGGTCGCGCACAGCAGGATCCGAAGGGTGCCGAATCGGGTTCGGTGCGTACCGAACTGCAGGCCGACTGCTACGCCGGCATCTGGGTCGCCCACGCGACGGAGTCGAAGGACAGGAACGGCAACACGCTGCTCAAGCCGGTCACCGACCACGACATCAAGTCAGCGCTGTCGGCGGCGTCGGCCGTCGGTGACGACCGCATCCAGCAGAAGGCCCAGGGTCGCGTCACGCCGGAAAGCTGGACGCACGGTTCGTCGGAGGCTCGGCAGAAGTGGTTCATGACCGGCTACGAGACGGGCGACCTCAACTCGTGTGACACCTTCAACGTCGACAGCGTCGAGTGAGGTCGTGAAAACGCTCGGACGGGTCGGAAAATTGACGAAAAGTGATTGCACGCTCAATTTGTTCCGACCGTGAGCCGACGGTAATCTTGCAGGGTCGCACCGACGTCGGTGCGGCCCTGCTTCGTCGCTGAGTCCCGTCACGAAGGCCAGGTATCACCGCATTGCGCGGAGCGACGGGAGCGGTGCACCCAGCATCCGAGCCACCCTGGTGGCTCTTGGGGTGAAGCCGGCTCAGGCCGGCCGAGAATCTAGGATCTCGAACCCGACAGGTCATGCCTCGTAAGCGCTCCTGGAGAGATCCGACATGAAGAACATGTCCCGCCGCTCGTTCCTGGGCAACACGTCCAAGGTCGCCGTCGGCACCGCCCTCGCCACCTCCGCGCTGGGCGCGGTCTCGGTCGGCGCCGCCTCGTCCGCCAGCGCTTCCGTCACCTCGGCGAGCGCTCGCCGCGTCGTCTCCAGCGCCTCGTCCCGACGCGGCGCCCCCTACGTCTACGGTGCGGCCGGCCCGTGGCGCTTCGACTGCTCGGGTCTGACGAGCTGGAGCTACCGCCAGGTCGGTCGCTCGATCCCCCGCACCGCCAACCAGCAGTACCGTGCCTCGTACCGCGTCTCGCGCGCTTCGGCTCGCCCGGGTGACCTTGCGTTCCTCACCTCCGGTGGCTACGCCTACCACGCGGCCGTCTACGCCGGCAACGGCATGGTCTGGCACGCACCGCGACCCGGCTCTCGTGTGCAGCTCGCGCGCGCCGGTTCCTCCTACCGCTTCGGCCGCGTCTGATCCGTTCGACCCTGACGCACGCCGCACAGCGCGACGAAGCCCGCCGCCTCCATCGAGGTGGCGGGCTTCGTCGTACGGTAGCGGTGGCTCAGACGTTGAATCCGAGGGCGCGAAGCTGCTCGCGGCCGTCGTCGGTGATCTTGTCCGGGCCCCACGGCGGCATCCAGACCCAGTTGAGGGAGTGGCCGGCGACGACGTCCATGAGCGCCGTCGCGACCTGCTCCTCGATGACGTCGGTCAGCGGGCACGCCGCGGACGTCAGGGTCATGTCGATGACGGCGTGCTTGGAGTCGTCGACGGTGATGCCGTAGACGAGGCCGAGGTCAACGACGTTGATGCCGAGCTCGGGGTCAACGACGTCGCGCAGGGCCTCTTTGACGTCCTCGACGTCCGACTCGACGGGCGGGGTGGTTGTCTCGCTCATGCCGTGATCTCCTTGTCGCTGCTGGCGGTGGTGTCGCTGTTCGTGCTGTTCGCGGCGCTCCCGGCGAGGTCGAGGCCGAGCTTGCCGAGCGAATCCTGCAGGGCCGACCACGACAGCAGCGCGCACTTGACGCGCGCCGGGTACTGCGAGACCCCGGCGAGCGCGATCGCGTCACCGATGACCTCTTCGTCGCCGGCGTCCTTGCCCTTGCTCGTCAGCATGCTGCGCGTCGCGCCGAAGACCTCCTGCGCCTCGCGCAGCGTGTGCCCGACGAGGTTGTCGGCGAGCATCGACGCGGACGCGACCGAGATCGAGCAACCGATCGAGTCGTAGCTGACGTCCCTGATGACGGCGTCGTCGCCCTCGCCCTCGACGTCGACGCGCAGAGTGATCTCGTCGCCGCACGAGGTGTTGACGTGGTGGCTCTCTGCCCCGAACGGCTCGCGCAGCCCCGCGTGCTGCGGGTGCTTGGAGTGATCGAGGATGAGTTCCTGGTACAGATCCATCTCAGACCTCCAGTCCGAAGATGCTCGGCACGCGATCGAGCGCCGCGAAGAACGCGTCGATGTCCTCGCGGGTCGAGTACACGTTGAAGCTGATGCGGCTGCTCGCGACGGCCTTGAGACGCCGGTGCAGCGGCCACGCGCAGTGGTGGCCGGTGCGGATGGCGACCCCGGCGTCGTCGACGATCTGGCCGACATCGTGCGGGTGCACCTCGTCGACGGTGAACGCGACGGCGCCCGTGCGGGAAGCGGCATCGAGCGGGCCGAGGACGGTGGTCCACGGCCGGGCCGCGAAGCCCTCGAGCGCGTAGGTGATGAGATCCTGCTCGTGCGCGAAGACGTTTGCCATCCCGAGCGCGTCGAGGTAGTCGCACGCTGCGGCGAGACCGATGGCCTGTGCCGCATTCGGCGTGCCCGCCTCGAAGCGCTGCGGCGCGGGCGCGTATGTCGAGCCTTCGAGCCGGACGATCTCGATCATGGAACCGCCGGTGAGGAACGGCGGCATGGCGTTGAGCGTCGTGTTCTTCGCCCACAGCACGCCGATGCCGGTGGGGCCGAGCATCTTGTGGCCGGAGAAGGCGAGGAAGTCGACGTCGAGCTCGCGCACGTCGACCGGCATGTGCGGCACCGACTGGCACGCGTCGAGCACGACCCACGCACCGACCTCACGGGCGATCGCGCTGATCTCGTCGACGGGGTTGATCGTGCCGAGCACGTTCGACACGTGCGAGAACGCGACGATCTTCGTCTTCTCGCCGACGGTCGCCCGCATCGAGTCGAGGTCGATGCGGCCGTCGTCGGTGATCTCGCACCAGCGCAGCGTGGCGCCCGTGCGGCGCGCGAGCTCCTGCCACGGCACGAGGTTGGCGTGATGCTCCATCGGCGTGATGACGATCTCGTCACCCGGGCCGATGCGCAGCCGCTCGGCCAGCTCCGGGTCGACGCCGTCGAGCGCGCCGTCGAAACCTGCGTTGCTGAAGGCGTACGCGACGAGGTTGAGCGCCTCCGTCGCGTTCTTCGTGAACACGATCTCGTCGGCCTCACCACCGATGGAGCCGGAGATCGTGGCACGAGCCGCCTCGTAGGCATCCGTCGCCGCCTCCGACAACTGGTGCGCACCGCGGTGCACCGCGGCGTTCACCGTCCGGTAGAAATCACCCTCGGCCGTGATGACGGCTTCGGGGCTCTGCGACGTCGCGCCGGAGTCGAGGTAGACCAGCGGCTTGCCGTCGCGGACGCGACGCGCGAGCACGGGAAAATCCTCTCGCACGCGCGCCGCGTCGAACGAAACGTCAGTCATGATCAGGCCTTGACCTCGCTGCCGACCGCCGCGTTGACGTACCGGTCGTAGCCCTCGGCCTCGAGACGGTCGGCCAGCTCGGGGCCACCCTCCTCGGCGACGCGGCCGTTCACGAACACGTGCACGTGGTCGGGCTTGATGTAGCGCAGGATGCGGGTGTAGTGCGTGATGAGCAGGACGCCGCAGTTCGTCTCCGCCTTGGCGCGGTTCACGCCTTCGGAGACGATGCGCAGCGCGTCGACGTCGAGACCGGAGTCGGTCTCGTCGAGGATCGCCATCTTCGGCTTGAGCAGCTCCATCTGGAGGATCTCGTGGCGCTTCTTCTCGCCACCGGAGAAGCCCTCGTTGACGTTGCGGTCGGCGAACGCCGGATCCATCTTGAGGTTGCCCATGGCGTCCTTGACATCCTTGACCCACGTGCGCAGCTTCGGCGCCTCGCCGTCGACGGCCGTCTTCGCGGTGCGCAGGAAGTTGGAGACGGTGACGCCGGGAACCTCGACGGGGTACTGCATCGCGAGGAAGACGCCGGCGCGGGCGCGCTCGTCGACGTCCATCGCGAGAACGTCCTCGCCGTCGAGCGTCACGGTGCCGGAGGTGATCGTGTACTTCGGGTGACCCGCGATCGAGTACGCGAGGGTCGACTTGCCGGAGCCGTTCGGGCCCATGATGGCGTGCGTCTCCCCCGAGTTGATCGTCAGGTTGACGCCCTTGAGGATCTCCTTCGTCCCGTTCTCCGTCTCGACGGTGACGTGGAGGTCGCGAATCTCAAGCGTAGACAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP008889|1630055:1638470|1631927_1633526_-|WP_038568265.1|DBSCAN-SWA
MITAEGIELRAGSRILLENATFRVAPGDRVGLVGRNGAGKTTLTKVLAGDGIPAAGRVVTSGEVGYLPQDPRTGDLDVLARDRILSARGLDAIARDLRTAETNMASEDDAVREKAMKRYTRLDAEFTAAGGYASESEASSIASSLALDERILTQPLRTLSGGQRRRIELARILFSGAQTLLLDEPTNHLDADSIHWLRDYLKAYKGGLIVISHDVELLDAVVTKVFHLDANRAELDQYNVGWKAYLQAREQDEKRRKRERQNAEKKAGALMAQADKMRAKASKATAAQNMAKRAERLLGSLEGERQQDKVAKLRFPKPSPCGKTPLMAEGLSRSYGSLEIFTDVDLAIDRGSKVVVLGLNGAGKTTLLRMLAGVDAPDTGRIIAGHGLKIGYYAQEHENLDVERSVLDNMKSAAPDLGETEVRKVLGSFLFSGDDVEKPAGVLSGGEKTRLSLALLVVSAANVLLLDEPTNNLDPASREEILGALRGYEGAVVLVSHDDGAVEALEPERILLLPDGVEDLWGPDYADLISLT
>NZ_CP008889|1630055:1638470|1630055_1631918_-|WP_038568263.1|DBSCAN-SWA
MSMGAGWQMMRSMSRDSSVKDQRLAPGTVRRVAGYARGYRRTIAAFLVLIVLDAVMVVASPLLLKHIIDDGVVPRHRDVVVWLSLAVALVAVLSAGVTITQRWLSARLGEGLIFDLRADVFRHVLAQPIAFFTRAQTGALVTRINSDVVGAQQAFTTTLSTVVSNAVSLVVLLVAMTSLSWQLTLAALVLVPLFLLPTRFLGRRLAGLTREQMTLNAELGARMTERFNVAGALLVKLFGRPEEESAQYDARAARVRDIGVSIAAQRSMFLVALTLMASLATALVYGLGGVLAVDGAMTVGTLLALAALLGRLYAPLTALSNVRVDVMAAMVSFERVFEVLDLEPLVRESPSARALPDGPLGVRFDDVTFAYPDADVVSLESLEANVTGDRRGGEDVLSGIDLDVPAGALVALVGPSGAGKTTLTNLVPRLFDPTSGAVRVGGLDLREASLASVRDRIGVVTQEAHMFHDTVRANLLYARPDATDDDLESALRAAHVWSLVERLPLGLDTVVGDRGHRLSGGEKQRLAIARLLLKAPDVVILDEATAHLDSESEAAVQAALANALVGRTSFVIAHRLSTVRDADVIVVLEAGRVVQTGTHRELLAAGGLYAQLHATQFKED
>NZ_CP008889|1630055:1638470|1637693_1638470_-|WP_038568278.1|DBSCAN-SWA
MSTLEIRDLHVTVETENGTKEILKGVNLTINSGETHAIMGPNGSGKSTLAYSIAGHPKYTITSGTVTLDGEDVLAMDVDERARAGVFLAMQYPVEVPGVTVSNFLRTAKTAVDGEAPKLRTWVKDVKDAMGNLKMDPAFADRNVNEGFSGGEKKRHEILQMELLKPKMAILDETDSGLDVDALRIVSEGVNRAKAETNCGVLLITHYTRILRYIKPDHVHVFVNGRVAEEGGPELADRLEAEGYDRYVNAAVGSEVKA
>NZ_CP008889|1630055:1638470|1635552_1635888_-|WP_006945372.1|DBSCAN-SWA
MSETTTPPVESDVEDVKEALRDVVDPELGINVVDLGLVYGITVDDSKHAVIDMTLTSAACPLTDVIEEQVATALMDVVAGHSLNWVWMPPWGPDKITDDGREQLRALGFNV
>NZ_CP008889|1630055:1638470|1635884_1636394_-|WP_038568272.1|DBSCAN-SWA
MDLYQELILDHSKHPQHAGLREPFGAESHHVNTSCGDEITLRVDVEGEGDDAVIRDVSYDSIGCSISVASASMLADNLVGHTLREAQEVFGATRSMLTSKGKDAGDEEVIGDAIALAGVSQYPARVKCALLSWSALQDSLGKLGLDLAGSAANSTNSDTTASSDKEITA
>NZ_CP008889|1630055:1638470|1633699_1634683_+|WP_038568269.1|DBSCAN-SWA
MTFNDNAQLDTSQVTSGGSGGFGGGGMGGGPVVGGIGGLILMLIFALFGGNLTGGSDSSGGGSTGASGSSYGSGLNGYAQDTQDVSGSNDSVAQAIEQCKTGADANRDDTCRIVGTVNAVQDYWGTALPQFTNGRTQYENVPTVIFSGQTSSGCGTASSQMGPFYCPSDRKVYIDAAFFQELTNKYGADGGALAKEYVVAHEYGHHVQDLLGALGRAQQDPKGAESGSVRTELQADCYAGIWVAHATESKDRNGNTLLKPVTDHDIKSALSAASAVGDDRIQQKAQGRVTPESWTHGSSEARQKWFMTGYETGDLNSCDTFNVDSVE
>NZ_CP008889|1630055:1638470|1636395_1637691_-|WP_038568276.1|DBSCAN-SWA
MTDVSFDAARVREDFPVLARRVRDGKPLVYLDSGATSQSPEAVITAEGDFYRTVNAAVHRGAHQLSEAATDAYEAARATISGSIGGEADEIVFTKNATEALNLVAYAFSNAGFDGALDGVDPELAERLRIGPGDEIVITPMEHHANLVPWQELARRTGATLRWCEITDDGRIDLDSMRATVGEKTKIVAFSHVSNVLGTINPVDEISAIAREVGAWVVLDACQSVPHMPVDVRELDVDFLAFSGHKMLGPTGIGVLWAKNTTLNAMPPFLTGGSMIEIVRLEGSTYAPAPQRFEAGTPNAAQAIGLAAACDYLDALGMANVFAHEQDLITYALEGFAARPWTTVLGPLDAASRTGAVAFTVDEVHPHDVGQIVDDAGVAIRTGHHCAWPLHRRLKAVASSRISFNVYSTREDIDAFFAALDRVPSIFGLEV
>NZ_CP008889|1630055:1638470|1634996_1635464_+|WP_038570910.1|DBSCAN-SWA
MSRRSFLGNTSKVAVGTALATSALGAVSVGAASSASASVTSASARRVVSSASSRRGAPYVYGAAGPWRFDCSGLTSWSYRQVGRSIPRTANQQYRASYRVSRASARPGDLAFLTSGGYAYHAAVYAGNGMVWHAPRPGSRVQLARAGSSYRFGRV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038568263.1|1630055_1631918_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.9e-43	26.5
WP_038568265.1|1631927_1633526_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-48	28.7
WP_038568269.1|1633699_1634683_+	membrane protein	A0A1I9SA48	Rhodococcus_phage	4.1e-49	42.3
WP_038570910.1|1634996_1635464_+	C40 family peptidase	A0A1J0GVU1	Streptomyces_phage	1.4e-15	50.0
WP_006945372.1|1635552_1635888_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_038568272.1|1635884_1636394_-	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LSF9	Mycobacterium_phage	2.4e-16	38.3
WP_038568276.1|1636395_1637691_-	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	1.3e-98	44.6
WP_038568278.1|1637693_1638470_-	Fe-S cluster assembly ATPase SufC	W8CYL7	Bacillus_phage	8.4e-05	25.0