CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008954	Amycolatopsis japonica strain DSM 44213 plasmid pAmyja1, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP008953	Amycolatopsis japonica strain DSM 44213 chromosome, complete genome	7 crisprs	RT,csa3,cas3,casR,DinG,DEDDh,WYL,cas4	0	5	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28462 : 36501

Mycobacterium_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148311769.1\|28462_29986_-	hypothetical protein	A0A286N2R7	Arthrobacter_phage	2.5e-61	34.7
WP_040133652.1\|29942_30395_-	hypothetical protein	A0A0S2MU64	Streptomyces_phage	6.4e-05	32.0
WP_040133653.1\|30423_30849_-	hypothetical protein	NA	NA	NA	NA
WP_051972900.1\|30916_31510_-	ParB N-terminal domain-containing protein	A0A0F7IM77	Mycobacterium_phage	5.9e-67	65.8
WP_040133654.1\|31506_32601_-	phosphoadenosine phosphosulfate reductase family protein	A0A2P1CCQ7	Mycobacterium_phage	1.5e-103	51.8
WP_148311791.1\|32597_33224_-	ParB N-terminal domain-containing protein	A0A222ZHK7	Arthrobacter_phage	1.9e-31	41.6
WP_158509823.1\|33598_33769_+	hypothetical protein	NA	NA	NA	NA
WP_040133656.1\|33956_34937_-	hypothetical protein	NA	NA	NA	NA
WP_040133657.1\|34933_35143_-	hypothetical protein	NA	NA	NA	NA
WP_040133658.1\|35426_35876_+	hypothetical protein	NA	NA	NA	NA
WP_040133659.1\|35889_36501_+	hypothetical protein	V5UP92	Mycobacterium_phage	1.6e-11	33.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP008953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008953_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_1

3513164-3513280

Orphan

Consensus_repeat	Method
GTGTCCGACGAGGTCATGGCCGAGGTCGGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008953_1

>merge|NZ_CP008953|1|3513164-3513280|CRISPRCasFinder
GTGTCCGACGAGGTCATGGCCGAGGTCGGCTGACGGTTGCTCGCGCCGACGTGCAGAACGTGTACGCACTGCGCCGGATTCCACGTGTCCGACGAGGTCATGGCCGAGGTCGGCTGA

>NZ_CP008953|1|1|3513164-3513280|CRISPRCasFinder
GTGTCCGACGAGGTCATGGCCGAGGTCGGCTGA	CGGTTGCTCGCGCCGACGTGCAGAACGTGTACGCACTGCGCCGGATTCCAC
GTGTCCGACGAGGTCATGGCCGAGGTCGGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038512502.1\|3513347_3513878_+\|DUF4262-domain-containing-protein	unknown	unknown	gnl\|CDD\|379457
NZ_CP008953.1\|WP_038512503.1\|3513991_3514438_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380376
NZ_CP008953.1\|WP_038512498.1\|3508665_3510042_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP008953.1\|WP_051972485.1\|3504155_3506858_+\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP008953.1\|WP_038512520.1\|3519231_3520434_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP008953.1\|WP_038512514.1\|3516922_3517330_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235636
NZ_CP008953.1\|WP_038512506.1\|3514514_3515099_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP008953.1\|WP_038512501.1\|3511765_3512395_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	unknown	unknown	gnl\|CDD\|237411
NZ_CP008953.1\|WP_038512523.1\|3520542_3521061_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP008953.1\|WP_038512526.1\|3521139_3523470_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP008953.1\|WP_038512512.1\|3515703_3516777_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP008953.1\|WP_038512491.1\|3503565_3504066_+\|peptidase-inhibitor-family-I36-protein	unknown	unknown	gnl\|CDD\|377188
NZ_CP008953.1\|WP_037338952.1\|3510677_3511391_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP008953.1\|WP_038512493.1\|3506847_3507915_-\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239071
NZ_CP008953.1\|WP_037338954.1\|3510042_3510609_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP008953.1\|WP_038512487.1\|3503025_3503442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038512496.1\|3507911_3508523_-\|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|224228
NZ_CP008953.1\|WP_007034928.1\|3511390_3511711_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NZ_CP008953.1\|WP_038512509.1\|3515095_3515695_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP008953.1\|WP_038512517.1\|3517537_3519235_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_038512502.1\|3513347_3513878_+\|DUF4262-domain-containing-protein	gnl\|CDD\|379457	pfam14081, DUF4262, Domain of unknown function (DUF4262). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 147 and 227 amino acids in length. Some members may be incorrectly annotated as the KatG protein.	2.03148e-45
NZ_CP008953.1\|WP_038512503.1\|3513991_3514438_-\|cupin-domain-containing-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	1.86992e-47
NZ_CP008953.1\|WP_038512498.1\|3508665_3510042_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.58317e-29
NZ_CP008953.1\|WP_051972485.1\|3504155_3506858_+\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	2.00096e-39
NZ_CP008953.1\|WP_038512520.1\|3519231_3520434_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	3.01899e-100
NZ_CP008953.1\|WP_038512514.1\|3516922_3517330_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235636	PRK05886, yajC, preprotein translocase subunit YajC; Validated.	8.02149e-25
NZ_CP008953.1\|WP_038512506.1\|3514514_3515099_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	5.74243e-78
NZ_CP008953.1\|WP_038512501.1\|3511765_3512395_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	gnl\|CDD\|237411	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT.	4.47448e-111
NZ_CP008953.1\|WP_038512523.1\|3520542_3521061_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	7.76161e-69
NZ_CP008953.1\|WP_038512526.1\|3521139_3523470_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP008953.1\|WP_038512491.1\|3503565_3504066_+\|peptidase-inhibitor-family-I36-protein	gnl\|CDD\|377188	pfam03995, Inhibitor_I36, Peptidase inhibitor family I36. This domain is currently only found in a small set of S. coelicolor secreted proteins. There are four conserved cysteines that probably form two disulphide bonds. Proteins 2SCK31.15C and SCO3675 also have probable beta-propellers at their C-termini. This family includes Streptomyces nigrescens SmpI, a known peptidase inhibitor of known structure. This protein has a crystallin like fold pfam00030 and is distantly related by sequence. It is not known whether other members of this family are peptidase inhibitors.	4.44294e-08
NZ_CP008953.1\|WP_037338952.1\|3510677_3511391_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	3.35912e-41
NZ_CP008953.1\|WP_038512493.1\|3506847_3507915_-\|P1-family-peptidase	gnl\|CDD\|239071	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	7.1953e-158
NZ_CP008953.1\|WP_037338954.1\|3510042_3510609_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.08247e-15
NZ_CP008953.1\|WP_038512509.1\|3515095_3515695_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	1.73867e-75
NZ_CP008953.1\|WP_038512496.1\|3507911_3508523_-\|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.29147e-08
NZ_CP008953.1\|WP_007034928.1\|3511390_3511711_+\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	1.59749e-06
NZ_CP008953.1\|WP_038512512.1\|3515703_3516777_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP008953.1\|WP_038512517.1\|3517537_3519235_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	1.02951e-125

>NZ_CP008953.1|WP_038512501.1|3511765_3512395_+|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT
MAIATGARPVVGVLALQGDVREHAAMVERAGARALPVRRASELSEVDGLVLPGGESTTMSRLLETFELLEPLRERIADGMPAFGSCAGMILLARQALDGRPDQRQLGGLDVVVRRNAFGRQVDSFEADLDFTGIEGGPVHAVFIRAPWVEKAGDGVEVLASVPEMPGSEDAAARIVAVRQGAVLATSFHPELTGDERVHRLFVDLVRQA
>NZ_CP008953.1|WP_007034928.1|3511390_3511711_+|AzlD-domain-containing-protein
MDPLELIIAGGVLAAGTFAFRFAGPVLKARFTVSPKAEKLMARSAVVLLAALVAVAALTEGHEFAGYARPAGVLVGGVLAWRKAPFALVVVAAAATAALLRLAGVP
>NZ_CP008953.1|WP_037338952.1|3510677_3511391_+|AzlC-family-ABC-transporter-permease
MRSIWRTTTRVLGRDLLRDIGLVCLADTIVGISYGAIAVGSGFPIWAPMLLSVLVFAGASQFMFVGIIAAGGSPVAAVAAGLLANARHLPFGFAIGDVLGKRWSSRVVGSHLMIDESVAFALAQRDEERRKAAYWVCGIGLFVCWNVGVLAGAYAGTAISDTDAFGLDAAFPAVLLALVLPSLRDRAARLPVLVGVAVALATTPFLPAGLPVLLALVGVLAGVAAKEPAEREPEGVH
>NZ_CP008953.1|WP_037338954.1|3510042_3510609_-|helix-turn-helix-domain-containing-protein
MSPTASDGAPLDVIAMSLRRERARTGLSLTEVAKRAGIAKSTLSQLESGTGNPSVETIWALCVALDVPFSRVVEPERPRVQVIRSGSGPTVFAEHADYACTLLSSCPPGARRDVYLIRAEPGKPRLSDPHMSGIVEHIVLSAGRAKVGPLDEPIELLPGDYICYPGDVPHIFEALEPGTYGVEIAEYT
>NZ_CP008953.1|WP_038512498.1|3508665_3510042_+|APC-family-permease
MSTPALRRGLRTLGTLLITLSAISPASSVFIIAPGVISGAGTGAFYSFVAAAVVGVFMAFVYAELASAFPLAGGEYAIVTRTLGRLPGFAVLGLMIITQVLIVAVIALGVGTYLGVLLPGVPGSVIAAVTCVVAAVVGVFDIKLNAWVTGIFLAIEILALIVVSALGLLNPARSFTELLAHPVASDGGPATVGAIAIATSVAIFAYNGYGSAVYFGEETQDASRGIARAILMALGITVLAELIPVTAVLLGAPDLNALFTSENMLSYFIGSRGGGTLDTVIGLAVALAIINAVLAIVLISSRMLFSSGRDRAWPSPVNRALASVHSKFGTPWVATVGTGLVAALLCFVDPKLLLVVTSTSIVAVYAALCLGAIVGRRTGATAHAKYRMPWFPVAPVLALGVLVFVVYQNVLDPAVGRPSLIVTACVALLSIAYYVLVLRRKGGWKLADVTEEKAEEPA
>NZ_CP008953.1|WP_038512496.1|3507911_3508523_-|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MARPSKAPERRAELIEVARQAVLDRGVLNLRLRDVAEGAGLSPGSVLYYFPTLADLLQEVQREAVARFCSAREQAAGTKTKPSDRLLAMIRSGLPTGPDDELCVLLYELGTIARRDPAYAARHITLYEQQVGIYTGILEAGAATGEFTLTAEPVSIARNLVALEDGYGLHLTQAVPTMETATAEAMLLSYARTATSNPLEDRP
>NZ_CP008953.1|WP_038512493.1|3506847_3507915_-|P1-family-peptidase
MTRARDLGVPLPGRTGEHNALTDVPGVEIGFTTLVEGESVRTGVTAVLPRGREDFAVPCAAGTYALNGNGEMTGTAWLAETGSLTLPVLITSTHAVGACHRGTIDWVVRERPDVAAEWLLPVVAETWDGYLNDSTAPTIHSGHAIAAIDAARPGPVGEGSVGGGTGMTCYGFKGGTGTASRVVSYGDDEYTVGALVQANFGSRRELTVAGEHVGAELGADNPMEETWAAPSGAGSVIVIIGTDAPLLPGQCTSLARRVPLGLARTGTAGSHFSGDLFLAFSTANPGALTSRFPRTDEAEYESMRFVPWGRLDPFFEAVVQATEEAVLNALFANEEMTGHRGRRVPALPTGRWSRS
>NZ_CP008953.1|WP_051972485.1|3504155_3506858_+|AfsR/SARP-family-transcriptional-regulator
MKEKSFYFYRLFGEPAAEWQGTDLPLGPPQARRVFALLLIEAGRPVPSDRIIDELWGETPPVSAKVQIQGLISGLRRALRSPRGDQPILTRGAAYQLDARPEDTDAGRFICLAARGRELLARDRHREAARHFRDALELWRGPVLAGIPAAAEVVARWEEERLSLLEDKAEAELGLGEHDRLVPELRDLLTAAPFRERVCGLLMTALARAGRVAEALDVYAGWRRRLVDELGVEPSPSIRSLQCEILSDGQGMTAREYPAYQEPAVPSQLPPGIPDFVGRDALIADLLAELRRDDGRDTLPVVLLTGAGGIGKSSLAIRLAHQVADDYPDGRLFAALRGTTDEPRTPEAVLTGFLRAFGVPADGIPADVDDRACLFRSLVHDRRVLLVLDDAAGEAQLRPLLPAGGGCAVIVTSRFVLAGLELGRQVPVDVLSLADAEALLAKLTDTDEDPVAAQQVLEHCGGLPLALRIVGSRIGDRTGWRLADVAGELAVERRRLDWLCAGDLAVRGSLSLGYQQLEPDRQRLFRRLGLLPPADFPAWAAALADDGEPETTSRALEDLRHRNMVQPAPRATGAPRYRVHDLLRAFAVEEVAVEPEQVRAEATERVLGGWLWLAEKAADRLSRSVLRPEPGTAVRTSLDEGLVAEPLSWFRDEVPALEAAVSHAADAGLGELAWELAVVAASYFDHSGLYAEWSRCHRCALTAARASGCARGEAALLRGIGQIHLYRDDFRTAREALTESCRISDRIGDRAGRARALTGLCVLARAAGRPETSRATGRRALALFREIGDVLGMAHAHTSYAVASTDLGLLDEAEAELDEAGRLCAELNDPHRTALVLRRRGELHLRRGDRRGAMSCLCRALELLDSLSDEICASRVRLDLARIRARSSDRPPSGKVLIRT
>NZ_CP008953.1|WP_038512491.1|3503565_3504066_+|peptidase-inhibitor-family-I36-protein
MRTLRFVSATLGAAAIATALAAAPASAATEGPATLRAAGIDAAKLAPGWKVTGDQVVWNGGETTLSLSPSAASNCQANFVCLYEHRDFGGRRLQFRDPGLKNLVDYGFNDQMSSWHNRRSVDARWYYNIGSGTSRCMQANSQSSYVGNADNDQASSLRIYTSASAC
>NZ_CP008953.1|WP_038512487.1|3503025_3503442_+|hypothetical-protein
MSQTIPFTDFNFKLAVVQELMYNQELLPKFDLREYAAEKGFTYDAGSVEAVPEASAYFEALEVPAELAEKITEIEMDGGNEIYLEIAPNWDGEDSLFDVDEFADVAHFPNLKSMTLLFTGNEEALESLRARGIEADWL
>NZ_CP008953.1|WP_038512502.1|3513347_3513878_+|DUF4262-domain-containing-protein
MSRVTTSEADALTAEETELIQWIESQAQARGNAVIAVDGDENDAPFCFTACAWALHNVAEAVVIGLPGHMGPVLLDAYVDRAAAGEIFEVGKRYDDFFEGAPVVFERVAKGHYPEYFGSAFLIYPDGDFPALQLIVATPDGHFPWHPDAPEGFARYQPVLTESGDPESWTPGVDGP
>NZ_CP008953.1|WP_038512503.1|3513991_3514438_-|cupin-domain-containing-protein
MPSPDEFTAHLGLQPLPVEGGRWAQSWRDETASAIYYLLAPPETSAPHRLDRLEIYAHHAGAPVRMLLLFPGGRVSRPVLGPDVAAGQRPQVVVPAGVWQASVSTGEWSLVGTVVVPPYTDDSVEFRSAAALAAEWPDATEDLAPWLR
>NZ_CP008953.1|WP_038512506.1|3514514_3515099_+|crossover-junction-endodeoxyribonuclease-RuvC
MRVLGVDPGLTRCGLGVVDGGTGRTVRPVAVDVVRTSPDADLAVRLLGISDAVERWMDRYKPEAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVTGSGRADKAQVTGMVMRLLGLEVKPHPADAADALALAICHLWREPMRVRLAEAEARAAEIAKNHKARLAAAAKEAKAQGAAR
>NZ_CP008953.1|WP_038512509.1|3515095_3515695_+|Holliday-junction-branch-migration-protein-RuvA
MISSVRGEILSIGLDHVVIEVGGVGFAVQATPATLATLRRGEQAMLHTALVVREDSLTLFGFADADARELFGLLQTVSGIGPRLALATLAVLDPDKLRSALVEGNITVLTQVPGIGRKGAERLTLELRDKVTALAGPTDGSPAVVAPGALRGEVVEALAGLGFPAKQAEQAVDKVLGEGDGHTTSSVLRAALATLGRKR
>NZ_CP008953.1|WP_038512512.1|3515703_3516777_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MDYEAVTEFETDETLSALPQTGEREVETTLRPRKLDEFVGQPRVREQLELVLESARRRGVPPDHVLLSGPPGLGKTSMAMIVAAELNAAIRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQMEFYSDAELELVARRAATILDIDIDRDGCAEIARRSRGTPRIANRLLRRVRDYAEVRADGKVTRKIARAALEVYDVDELGLDRLDRAVLTALVRSFGGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTPRGRVATAAAWEHLGLPAPAGATRGDQGGPNLFDQD
>NZ_CP008953.1|WP_038512514.1|3516922_3517330_+|preprotein-translocase-subunit-YajC
MNQLLLPLLLMLVVAIPLVMGTRKQKKAAAAQQELLSSLAPGDRVMTTSGLYATVADASADTTIDLEIAEGVVTTWLRQAVREKVEPAVETDEDATDSTDTDEVVEAPVVESKDDERVEEKSGAQIAPPLEHGKK
>NZ_CP008953.1|WP_038512517.1|3517537_3519235_+|protein-translocase-subunit-SecD
MAAPAGHLRPGRYLAFFALIVVALYALVFFTGSGKPTPKLGIDLQGGTRVTLSARNPDGGDPPRESLEQARSIIERRVNGIGVSGTEVVLDGSNVVITVPGEQGDQAKTLGKTAKLGFRKVVTSQPVTPVQQPTAPPASGTPSSAPPSSPGVSAPPSSPANGGGGAAGAPQQQPGADSDEQTKKEIENARNLRQNPDLLSTDQAKQAAAAEKAFAALNCDPKVSDPLVGNDLTDKPLVACGDKNTMKYLLEPEFLPGTEISDASSGYDTQNSQWVVNLNFKGEGSRIWGDFTSKNVQKQAAFVLDTQVVSAPTIQSAILGGQTQITGRFSQTEAKDLADVLKYGSLPLSFESSDATTVSATLGLASLQAGLIAGGLGLLIVFIYCLFYYRLLGVLTILSLALSFSLVYAVLVLLGRWIGYTLDLAGVAGLIIAIGITADSFVIYFERLKDEIREGRTFRSAVPRGWSRAQRTILASDAVSFLAAAILYWLAVGEVKGFAFTLGMSTVLDLVVVYLVTHPLVSMVSRSKSKFLSNPKNLGLGAVQQVGSERKAARPAAGRPNVKEA
>NZ_CP008953.1|WP_038512520.1|3519231_3520434_+|protein-translocase-subunit-SecF
MTVVDENTTTAGKRDSIFRRLYVGTGAFDVVGKRKRWYLFFGALVLVCIASMGIKGFNFGIDFEGGTQIQLPANGKNGQISEQQAKDVFSEALGRPADEAQKVGSGASSTIQLRSDTLDAAEVAKIKEALFRDLGPIGSNGQPSVQAISDSAVSASWGGEISRQALIALGVFLLAVTLFLALYFDTRMAAAALISLLHDIVVTAGVYSLIGFEVTPATVIGLLTILGFSLYDTVVVFDKVRENTRGLLGLTRRTFGEAANLALNQTLMRSFNTALIAMLPILGLLVVGYILLGSGTLQDLALVQLTGTLVGVLSSVALATPLLVDLKMRDPKFRQQADRVAARRANQARKAAERDDDFDPNDEDALAAELRKEKAYAAAASVPARNQKAHKGRPSGKRKR
>NZ_CP008953.1|WP_038512523.1|3520542_3521061_+|adenine-phosphoribosyltransferase
MELAKALDLIADVPDFPEPGVLFRDLSPLFADAAGFKAVTDGLAATVDPEVDLLAGVEARGFLLAAAVGYARGLGVALIRKPGKLPRVAGRVGYTLEYGTATVELPEGVVVPGQRVAILDDVLATGGTVAATCKLLEDAKAQVTGVSVVMELGALGGRSVLEGRRVEALRVC
>NZ_CP008953.1|WP_038512526.1|3521139_3523470_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MSQELDAAVSSKDGTEQNGAARQGAAPTPSATRRVRARLARRITAQRAAPVKQVLEPLAVIHRELHPNADLAQLQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDTTTLVAALLHDTVEDTGYSLESLKADFGEKVGELVDGVTKLDKVKLGTAAEAETIRKMVIAMARDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMATVKWELEDLAFAILQPKKYDEIVRLVADRAPSRDTYLRSVITELTGNLEGSRITAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVEDVRDCYAAMGVVHALWQPVPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHRTAEYGIAAHWRYKETKGTHNGNAMDVDEMAWMRQLLDWQREAADPGDFLESLRYELASREIFVFTPKGDVITLPVDSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVIEIFTSKAETAGPSRDWLQFAGSPKARAKIRQWFAKERRDEAIEGGKEAITKEVRKVGLPIQRLVSAESMGAVATELRHPDISSLYAAVGEGHTSAKHVVQRLVALIGGVDEAEEELAERATPSTVTRRRGSNDVGVVVKGASDIWAKLARCCTPVPGDEILGFVTRGGGVSVHRTDCTNADDLRAQPERLVEVEWAPSASSVFLVAIQVEALDRHRLLSDVTKVLADEKVNILSASVTTSRDRVAVSRFSFEMGDPKHLGHVLKVVRGVEGVYDVYRVTSAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_2

4702117-4702194

Orphan

Consensus_repeat	Method
CCGTTGCCGCTTTTCGGCGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008953_2

>merge|NZ_CP008953|2|4702117-4702194|CRISPRCasFinder
CCGTTGCCGCTTTTCGGCGACGGGCCGGAAAGCTGAAGTCCAGCACACACCTCGCCCTTTGCCGCTTTTCGGCGACGG

>NZ_CP008953|2|2|4702117-4702194|CRISPRCasFinder
CCGTTGCCGCTTTTCGGCGACGG	GCCGGAAAGCTGAAGTCCAGCACACACCTCGC
CCTTTGCCGCTTTTCGGCGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038514745.1\|4709021_4710815_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP008953.1\|WP_038514734.1\|4698817_4699861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514727.1\|4693016_4694330_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP008953.1\|WP_038514747.1\|4710890_4711637_-\|EI24-domain-containing-protein	unknown	unknown	gnl\|CDD\|179898
NZ_CP008953.1\|WP_038514731.1\|4695792_4698816_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315987
NZ_CP008953.1\|WP_038514724.1\|4691529_4692126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514750.1\|4711646_4712987_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|215242
NZ_CP008953.1\|WP_038523588.1\|4694351_4695197_-\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NZ_CP008953.1\|WP_038514742.1\|4705968_4708953_+\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|271149
NZ_CP008953.1\|WP_038514736.1\|4699857_4701171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514728.1\|4695206_4695734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514755.1\|4714657_4715653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_051972549.1\|4713039_4714236_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026
NZ_CP008953.1\|WP_038523598.1\|4715780_4716353_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_CP008953.1\|WP_158073270.1\|4701288_4701984_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP008953.1\|WP_037336691.1\|4714232_4714649_+\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|369566
NZ_CP008953.1\|WP_051972548.1\|4703694_4705755_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP008953.1\|WP_038514739.1\|4702195_4703419_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_CP008953.1\|WP_038514721.1\|4690507_4691302_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP008953.1\|WP_038523585.1\|4692292_4693024_+\|hydrolase	unknown	unknown	gnl\|CDD\|293813

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_038514745.1\|4709021_4710815_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	4.45983e-08
NZ_CP008953.1\|WP_038523588.1\|4694351_4695197_-\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	2.62076e-05
NZ_CP008953.1\|WP_038514727.1\|4693016_4694330_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.30884e-96
NZ_CP008953.1\|WP_038514731.1\|4695792_4698816_-\|hypothetical-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	0.00047294
NZ_CP008953.1\|WP_038523598.1\|4715780_4716353_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	1.17489e-13
NZ_CP008953.1\|WP_038514750.1\|4711646_4712987_-\|FAD-binding-protein	gnl\|CDD\|215242	PLN02441, PLN02441, cytokinin dehydrogenase.	3.5057e-119
NZ_CP008953.1\|WP_158073270.1\|4701288_4701984_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.3215e-21
NZ_CP008953.1\|WP_038514721.1\|4690507_4691302_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.99989e-33
NZ_CP008953.1\|WP_051972549.1\|4713039_4714236_+\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.62472e-97
NZ_CP008953.1\|WP_038514742.1\|4705968_4708953_+\|DUF1080-domain-containing-protein	gnl\|CDD\|271149	cd04083, CBM35_Lmo2446-like, Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446. This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases.	3.89053e-56
NZ_CP008953.1\|WP_037336691.1\|4714232_4714649_+\|Dabb-family-protein	gnl\|CDD\|369566	pfam07876, Dabb, Stress responsive A/B Barrel Domain. The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Arthrobacter nicotinovorans ORF106 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	5.03938e-20
NZ_CP008953.1\|WP_051972548.1\|4703694_4705755_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.44323e-11
NZ_CP008953.1\|WP_038514739.1\|4702195_4703419_-\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.97345e-14
NZ_CP008953.1\|WP_038514747.1\|4710890_4711637_-\|EI24-domain-containing-protein	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	8.26224e-24
NZ_CP008953.1\|WP_038523585.1\|4692292_4693024_+\|hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	2.99084e-16

>NZ_CP008953.1|WP_158073270.1|4701288_4701984_+|class-I-SAM-dependent-methyltransferase
MSDAVPVDYESDPGRFAANVLSTAWFSSCGDVHPEIAAGFATEGCSLVLDVGGGTGALSRLLVRRNVPTVVADLASHVSHAPGYSVQADVTGLPFREATFDGAAALWMLHHVPDPVEALTEVRRVLSPGGLLAVSASSRWNDPELAWALPRWGRASSFDAETAEPLLGKVFEVESIRAWDARLVTLPDRAAVALFLRGRGLPESSAWRLATKTAVPLSLTKRGLVAWARKR
>NZ_CP008953.1|WP_038514736.1|4699857_4701171_-|hypothetical-protein
MTTASGESRLRSAVLAQAWQRIDGVEVLSSADGGPLTRTIKKIIDPLVIRTAARPRLGRPVLDAVTAAELTELLLADTDRLRATAAWFTHLKRQRRALRITAGNVQDVCFPLAYELATGFGSPGPDAAATAAAALRDLHGEGGSAGVDQLTAYLADPRHEARLTAELQRRWAAETVVPQDIAALQTFVDDLSDAAWRTLADSAAGHALGLGLRKAGGARELSEIVREISGLPAPDLGLQRGDRTAVPPLNRRDETGAELLERSVERRVRATLRRLPPDERPPVEDLVDDELTRVAAGFGLGLPALAACFALGVVLAPALRPLDGAAPAGVPEFARRLNAQVAREGYVLHARRALAGATPLTPRPDAALLRDLREFAKHFLSRLWVRLHGFDVRGDLPADAADVRDLVTGVVRSTSLDLRTKVRRALMARLPDLEAVS
>NZ_CP008953.1|WP_038514734.1|4698817_4699861_-|hypothetical-protein
MTHPVHTPVVAADGGLIRFALADLLAGRATTMRVELSDAGAAEPWLTRLVGAEASLAALGQGHADLPARPELGRLALLLWLRRWWPAGPSLGVPSLDPALLDLETAVATADVEDLAEGLLDGFEASPAELFDAAIADGALAAAAWPVADDVRALCARLAAWFDDQDDVVRAEAAARVETPASSQKAYALAAGLDPVAPGEGVLASGRASVDWARVPPGILDAGEDTVGWRIVAAAAATRLEVVVAGAFADAAISAFASHEGEPFAEVPLELGAGRFSGTADLDDAAARLAARVPGGQIAVVVGMADESVAGTTTEDRAEVVALVRARPPELRTLAERAAAASADEEF
>NZ_CP008953.1|WP_038514731.1|4695792_4698816_-|hypothetical-protein
MLVGMPPPRNPPDRPLPPELGPASSHGYNCRCVARHFGLDPAPYGELPACSLSERQYRKLLVEAAKVQDQAKRLAVTRNVADAQRKYARMREIAQRLDRTDLELAAVSDLATLCYSAGDLRNARQCAEAVLNVFKVSAVAIVHFGQYAEARMIEGSREVAERVLISLATEEGDVVKARELIAGQRRRAAFRKEAGPDQYPPELLDVHGVDELELRIFDVRVQIAAGDFAGARTAIEEILAALDALAENDEVRERVVHQQAMVRAERARIRQAGGEDAEARADLLRLTAQHAGSPMAAKVGIGLAEARALAGDFPGAVAAIVTARDELAAAGLTGDVAEASHALGTLLLHAGDVAQAKEQFEHARTIRTANGDGPGLRLVDTALARCAAAEGDWTTAEDHANRARESARTAGDWADLLHTDFVAASIGFARGEDLPAVLDLLLPLTLAAAEYRFEFVSPEARTAWARDIAAPTMGMALALLAQLKEPRLAAELVERTCAVGAYTGTEERTLDLTGALPTLEVGPVAEGLPLAALGSVTSSLPLRLAPPPALRWSPSSPMELDRWLAVAAERYRLPRPVTDTVETWPAAKPGRETFLLRFADAGHTFLTWRTTEDLDTVHTHPIDFALVGTARQVLDAASPTPHEGESVADAVRRSLGEDAFGSFAGEQRLARVLALNLLPADLVERLRRAAAGGNRPLLRIQPSPSLAAVPWGLLALPDRRADRVLEIDEIGLCFDGDERVLDVADVSLLAPTAIPRRPSSAGGPPVYLLDPRIPGQSAFGELGSVLGKQDATSPLIRHLDERLADGPVLPAVERGLDLVRRTDTDRRLLAELVAGPCSRLVFVGHVSRVRDEHGAQTALHLSCAADLPGTAAPIGAHRPFTAADLALSEMDMPARVALVGCASASDFGLAEPFGVLLAAVAAGAGLVAATVWALPTSAAVPGADPMSELVIAVDTALAGEDPVTELCAWQRSRLARWRERPEPATSPVFWAPLTCLDATDDGKTWVR
>NZ_CP008953.1|WP_038514728.1|4695206_4695734_-|hypothetical-protein
MFKKIRDKINDATQQGMARGEQDFQRHAEQFRQAAAAQGHDITPQLPTPQLAAQAFRSLNADPDMAAFMALPMDEQLRQQQELQAYGTELRRLYDTCEPATLVVRGLEPTGRKIAGQAQYTATLEVTRADGTTYRTVTQLITPLATIQQYAPGTRHEARVDPADPAKVAVFGPIG
>NZ_CP008953.1|WP_038523588.1|4694351_4695197_-|DUF3592-domain-containing-protein
MFGTFEFGLPEDSRRARRPGLRLWLLGVPTTLAWAVVGWSGALGLLDGFRLMSLNRVDAWGADAGPAVSLVLLFSISITVASSLGFAMLWGGGMSLRGMGVGFRASSLAASLGIALGSGAAIPSWTPPEAVGKRLPSEPWTDVDWVVYYEPYLVPAVAGVTALVMIMVLGRAFVTKAEADDRAQALAQTGRQVMGTVLGVEFTNVWVMGNPRFTVQVRFPADEGERTVVATMITPPLQAPARGSTVKVTYDPRDPDSVRIDPDPADRAAGGNLGAFLPPLF
>NZ_CP008953.1|WP_038514727.1|4693016_4694330_-|MFS-transporter
MDEQTAEVSTAQAVRKAMIRLVPLLGLLYLLNYLDRVNVGFAALTMNADLGISSAAYGLGAGLFFVGYFFFEVPSNVILHKVGARIWIARIMVTWGIVASATAFIQGEVSFYIVRVLLGIAEAGFFPGIILYLTYWFPRKQRAKIVALFFLAVPLSSVIGSPVSSLLIKHGDGVLGFDAGWRFMFFAEGVPSILLGVAVFFLLPSKPKDAKWLTPGERTALQSAIDAEDTREVGKEVSTRSALTDPRVLALSAVYFGIIFGLYVLAFFLPQVIKGFQQQFQTNYSIVEIGLITAIPYAVAAVAMVLWARHSDRTGERAGHVAIAAFVGAVAIAAALYLGSPLWVMIAVTICAVGVFTAIPVFWQLPNAFLTGVGAAAGIGLINSFGNLSGFVGPYLTGWLQGLTGSFRAGMWAVAFFMAMAGVIALTFRNKEKNPVK
>NZ_CP008953.1|WP_038523585.1|4692292_4693024_+|hydrolase
MEEAGDLGAHTGRWWTHEELMSVPHKTLHRDHGRGLHSVKRDPQFAIGHWSFVATTPAGTLLWDPPSWLDTEVLDVVRGLGDVAVIATSHPHMFGAQLGWSRALGGVPVLVNERNREWLPAPDPAFEFWDEHVEPLPGLELIRLGGHMRGSAVARTPDGSILAGDTISGGLAPGWVSFQRNFPKHIPLSGAVVRRVVDRLDDLTYDRLYTLGGDTIDRDARAVVRRSAETHIRWVNGDFDHLT
>NZ_CP008953.1|WP_038514724.1|4691529_4692126_+|hypothetical-protein
MTETLVRKGVRRFRAAGIAAVVAGTVMLTAAGNAAAVEKNLTYKGGFPIIGDQKVAVVVKAEIPATAKAGEPISVPFTLDVDSGQAAGDGLRLVGAKKLSGTISSKVNIALGEQKVSIPIELPIPDTEVPAEGSLKFTATGKVDFTIPAGTPAGEATSSVDAAATSHIVTDSSLGEFDVNLTLDPPDQDAVLGKTTVS
>NZ_CP008953.1|WP_038514721.1|4690507_4691302_-|adenylate/guanylate-cyclase-domain-containing-protein
MIVTERPEPWHLRTRRFLRATDQRGELVRGARFLRGLVPGNAEPPAPSTGRSSDRLARLLTEAGADRPSATRELGLAAVQAWQAVRRSGAPPLSADGITVLFTDLVGFSTWALEAGDDRVLELLREVSKVTESIVVGHRGSVVKGLGDGVMAVFADPGEAVNAAYETCSAVSVIKAEGYLPHLRAGLHRGNPQRVGDDYLGVDVNIAARIMAAADGDEVLASASVVEELDQDTFTVRPRRNFRAKGTPRDLRVFRVVPRYTADG
>NZ_CP008953.1|WP_038514739.1|4702195_4703419_-|HNH-endonuclease
MALLESLTDPEVLAAVNDAANVLNDKDSVALAQAASAGIARLEAVRFRALAQLNRHREGVRSVAQEVALDLSLVDNHAGAMVAAADALTTRLPRTLNLMDEGKLAGFSAMKVATATAWLSDEDALAVDALLEDRIGDKNPDQVRKAANHAANTIDPEGAGKRAERHRDGRRLTLRQGETGVASIEVEDGPVEKVAAAYQRIDREARALKTKEEPRTLDQLRADVALDLLLGGQGGASERSEVFLYMDLFTYLGLNDDPAELAGHGTIPAALAREIAEGGNSVLRRIITDPLSGQVLDLGRDRYRPTAGLAEFVRVRDRECRRPGCHRPAQACDIDHSVPWQHGGHTSDTELIDLCRRDHRLKDEPGWTYHLATDGTLTITTPTGQRYDSTPPPLHGPRPGSDVPPPF
>NZ_CP008953.1|WP_051972548.1|4703694_4705755_-|tetratricopeptide-repeat-protein
MDRWYDESPGRGEGSPLTPHQLPSVTATFVGRETELAKVSAIADRGDGRSNAIAIIAGAPGVGKTALAVQWASAQRERFPDGDLYCDLHGYAPGPASTSPEVLAGFLRALEVPGKKIPRSLEAKSALFRSLLNDRRFVIVLDNVTSPDAVRPLLPSTPGCFVLVTSRSSLSGLVVTNGARRITLDMLMPSESETLLRTAIGARRADGEPGAIRELADLCGHLPLAVRIAGERVAAHPYLRLADLLGELRSEARRLDAFETGDDEMSALRPVFSWSYQALDPATARVFRMLGLHPGPTVSVATASVLVGPPTADVRRRLDKLTAGCLLSEVDRDRFRFHDLLRVYAKERVDAEESAEEREESPRRLIEWYLACADSADRVLTPMRRRVALEVSPDVSGKLEFGTYGEALAWCEAEQANLVASVHAALAADWSSIACRRPLALWAFFTLRKPWADWIATYKAGVEAARRCSDQFSEASLLAGLGIAHRDLCRFEEALAYLESALAIRRRIDDSWGQGQALISLGIAYHEQGRFAEALGHHTDALEVFRLLGDEWGAAQTLHFLGLTNHGLGRFDQAYENLRQALDIRHRIGYRYGEAETLVGLALVFQKIDRSGESAGQLKRALELRRDMGDRYGEAAALDHLGQLWARKGETEWAKTCWGDALNIFNELGAPRAAEVYARLREVQAS
>NZ_CP008953.1|WP_038514742.1|4705968_4708953_+|DUF1080-domain-containing-protein
MLPFVRKRFNRSIVASLALVTALTGLATVPAEAAIPPQQPGVTLRTYDLQRELTKLCAIKSGQTPNVDKLMPTISWTTTADFGLDERFVSEVIGNINIATAGQYEFRLTSDDGSRLRIDGQTVINHDGLHGATPATGTVQLSTGYHALRIDHFDNTNDQQVTLEWRPPGAADFALVPNSVLSTDADVVRVTSPGRKECEGATDSPGDGLPLNGVHPGFTLTNLRPEGFQPQVTGMDWLPDGRLAIATWGGSDKVLGEVHLLSNVSGNTDPSKVRTQRVASGLKEPMGVKYVDGKLYVSEKTRLVELNDTNGDGVTDDYRTVATWPFGGNFHEFAFGLLYKDGYFYANLSVSINYGGATTDPQPAPNRGTTIKVNKATGQVSYIAGGLRTPHGIGWGPEGDVFVTDNQGGWLPVNKLVRVKQDRFFNHYTNPAGPFDAKPVTAPVLWLPHNEIANSPSNMVMLPTGPFAGQMVYGDVTYGGLQRAFLEKVNGEYQGAVFRMTQGLESGVSRISLGPDGAIYTGGIDGGGNWGQPGKLAYGLQKVTPNGTNAFDIRAMRAVAGGFELEYTQPLSAGTAQNLAAKYQAQQWRYQPTPAYGGPKIDEQTLSVTSASLSADRKKVTLQVAGLKAGHVVHLRSPRPFAAESGAALWSTEAWYTLNSLVGGPPASTTYEAERAALSGGAGTNTNHAGYTGTGFVDGYWNQGAATTFTVNAPKSGAYNAALRYSNGPDPAPGTKSVTVYVNGTKVKQVRLASTGNWDTWNTQPETLNLKAGANTISYRYDTGDAGNVNLDSLTLTESRRISLFKGTDLNAWEKRAGGAATWPVSGGAMESNGGDIRTKQQFGDFRLHVEWNEPNYPPEVTGQQRGNSGVYLQERYELQVLESFGDTTLANNEAGAIYSKKAPDRNMATAPGTWQTYDVTFRAARFDGAGNKTDNARVTVVWNGVVVHNDVAIDGGTGDSIPESAAPGAIRLQDHGDPGENPRFRNIWIEPIG
>NZ_CP008953.1|WP_038514745.1|4709021_4710815_-|carboxypeptidase-regulatory-like-domain-containing-protein
MKRALFLAAAIPIVALLTTGPAMADEGIVAGVVKAADSGAPVAGACVTLFDLELKETGSGCAGADGRYEIAGVVPGKYKARATAAGYAELWAYNKGSALAAEVLDLPHGLDFSLRQGTATVRGQITAEGRPAAGASVSLTDQNQRWWSTVLTAADGTYSFSGVKADTYTMAITYGDRTQWIRQKSSFPEADTFAAEEGQVAVVDEAMVPYGKLRVVATDEKTGAPVAGACSQLNRPRPPELRKCAGADGVMLYEDVPPFDYYTLSVWGPDGTHYPVNGQQVHLPPGQTTEFRAPMKPAASIVATVRDAKTKAPLERICVDTYALPIVGVLDADYQYYCSDADGKLVIGPIDPGAYKLLVKPLDERYGIQWAGPDGGTGDIGQARTVTAELGKAVPTADIKMDPAGTITGKVTDRATAAPVNGVCVYPYAVDPRIGFRFDVNCSRNGGVYTIKGLGPYKWPLEFASSRGDYAWQWSGGGADRFAARPVRVRPGATVTENAALVPNGAISGRILDKDGKPTFGYVYAFSARTGDIVDWATPDSNGQYTVNGLTTQNVKIKHYTDADCWYRDAADFASATPIPVTAGQTTGGVDLRPCRR
>NZ_CP008953.1|WP_038514747.1|4710890_4711637_-|EI24-domain-containing-protein
MRDFFKGIRMFGRGLGILARSPRLLLIGALPALLTTVLLIGGIVALAFWIDDLSLLITPFADDWSPGWRTTIRVAVGVAVFGAVLVIAMIGFTAITLAVGGPFYEHIAEKVEDDLGGVPGAVDLSGWRLLVMGLKDGLALVLRSLLFTIPLLIAGFIPVVGQTVVPVLLALVTAWFLALELIAVPFYRRGMGLKQRRLLLRRHRALALGLGLPVSLLCLIPFAALIVMPVGFVGGVLVAREVLADDMA
>NZ_CP008953.1|WP_038514750.1|4711646_4712987_-|FAD-binding-protein
MTDEILPAIAGEILTGDAALSVAGQDWGKLIHARPALVVRPASVTDVAVVLRFAAARGLPVAARGAGHSPYGQGQVEGGIVLDMTSLRPRRVVTGDLVSVDAGARWREVLETTLPHGLAPPVLTDYLELTVAGTLVVGGIGGATHHHGTQTDGVVELEVVTGTGEVLTCSRETNADLFDAVLAGLGQCGVITRVTLRLTPAPARARRWKLYYDTLPAFLADQRAVVRDGRFDYVEGQLIPVEDGWRYMLEAVAYHTPPAEPSESALLDSLEFDESEDEDTAYFDFLNRMADGEAALRAMGSWFRPHPWLNVFLTDYTVERFVAETLAATGESELGATGLILLYPVRNDRLKTALFSVPPGELSWLFSPLRVGSPEDPPHNARLLELNVDLYRKARALGGKVYPSNALPMSTEDWRAHFGDAWPKLADAKARYAPGNLLNPGQRLHW
>NZ_CP008953.1|WP_051972549.1|4713039_4714236_+|MFS-transporter
MPVSRCEIGGVTDTLAPTRRARGTVLAAAPLTIMAAAIIAPSLPAMREDFADTPGSGLLVRLALTVTSLAIAISAPLSGIVADRVGRRPLLLTGLGLYAVSGTAGFFVDDLYLLLITRAGLGLAVGGIMTAVSTLITDWFTGERHASFLGLQQAFASLGGVVFLPLAGLLATVSWHAPFWIYSVSAIVVVFAIVSLREPERNSPAVGGGGRLPARVVGVYVLALVVTLVFYMAPTQLPFLLQGFGSGPVVVGAVVAGSTLTGVVGALTFPRLRRRLGPTAITTVSVALMGAGWLVIGTAGTVAQVVTGLLAGGLGVGFVVPNLNLLLAESADPARRGRVLSGLVTGIFLGQFLSPLVVQPLVQGIGIADAFTWTGIALGAGAALAALLSNRNNGKEAR
>NZ_CP008953.1|WP_037336691.1|4714232_4714649_+|Dabb-family-protein
MIYHGNRFTLRPDASPEQVEEALESLRNQGRVIPAVKSFVVGRDFGGDYEWGAVFAIEDLDGYWEYLMHPAHRNTDRVGLPLVDRFASFDVTDDPDPEMGAKIAELHQRRYDNDAELTELISGLGEYSGSAAPGKHGA
>NZ_CP008953.1|WP_038514755.1|4714657_4715653_-|hypothetical-protein
MPLALARGFLTGIITGTTLCAFVVGIVIEYVPLMITGVGLPIAYGVLLYLAGAPRRAREARIAPVIALAKIESLRAGGTETGDIPVYFDLTVAPEGSATYRLKITHGINLVDLPDYHAGDVLVVRYPPDRPWKAEVVERLSPEWERRVAEAVIESAPESSLVQEPAEGCAFGALAVLGFVLGAALVLYLFRAELFAPEEPVRAEETQSSTTTSSSGSATVNVDRSLLGEGELRRAIDSLALATDVSQVITAVVEDRRLTVVFAPTGAQVPRFDLREPAVDRVPALVERAKATIHVGDPKTWQVTIIPFGTAVSSRVIVTGPDGSGSLADGG
>NZ_CP008953.1|WP_038523598.1|4715780_4716353_+|TetR/AcrR-family-transcriptional-regulator
MARAGLTTERVVRAGAELADEIGFEHVTPTELAKRCGVKTASLYSHVRNAHELKTEIALLALAELADLAATAVAGLAGKDALITLANVHRDYALEHPGRFTAARFRLAPEKASTSAGVRHAELMRAILRGYDLAEPHQTHAVRLLGSVFSGFVGLESAGGFSHSTPGPQESWTEILDALDVLLRAWPRTK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_3

4801165-4801821

Orphan

Consensus_repeat	Method
GTCCCGGTAGGCTTGCTCGGCCTCTGCCTCACGGCCGGGCTG	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_CP008953_3

>merge|NZ_CP008953|3|4801165-4801821|CRISPRCasFinder
ATACCGGTAAGCCTGCTCAACCTCTTCTTCGAGGCCGGGCTGTTGCTCCAGCCACCCCCTGAACGCCTCAACCGCTAGAAGCTCCCCGCCGACGATACTGTCCCGGTAGGCTTGCTCGGCCTCTGCCTCACGGCCGGGCTGACGCGATAGCCAGTCAGCGAACGCGGACTGTACGAAGAGGCCACCGGCGGCGGCAGCGTCCCGGTAGGCCTGCTCGGCCTCTGCCTCACGGCCGGGCTGGCGGGACAGCCAGTCAGCGAACAGGCGAGCAGAATCGTAGTCATCGGCGGCGATAGCGTCCCGGTAGGCCTGCTCGGTCTCCTTCTCTCGGCCGGGCTGGCGGGACAGAAGTTTAGCCAATCCCTCGGCCGCGCGGAGATCTTCAGCGGCGATAGCGTCCCTGTAAGCCTGCTCGGCCTCTGCCTTACGGCCAGGCTGTCGCGCCAGCCACGAAGCGAATGCGTGTCTCGCACCAGCGAACCCGGGTCGCGCACCGCTGCCATCTGCGGTGACTGCCTTCCGGTAAACCCGCTCAGTCTCTTCTTCGCGACCAGGCTGGTGGGACAACCACTGTGCGAACATGATGAGCGTGTCGGCATCGCCGTCAGCGATGGCGTCCCGGTAGGCCTGCTCGGCCTCTGCCTTACGACCGGGCAC

>NZ_CP008953|3|3|4801165-4801821|CRISPRCasFinder
ATACCGGTAAGCCTGCTCAACCTCTTCTTCGAGGCCGGGCTG	TTGCTCCAGCCACCCCCTGAACGCCTCAACCGCTAGAAGCTCCCCGCCGACGATACT
GTCCCGGTAGGCTTGCTCGGCCTCTGCCTCACGGCCGGGCTG	ACGCGATAGCCAGTCAGCGAACGCGGACTGTACGAAGAGGCCACCGGCGGCGGCAGC
GTCCCGGTAGGCCTGCTCGGCCTCTGCCTCACGGCCGGGCTG	GCGGGACAGCCAGTCAGCGAACAGGCGAGCAGAATCGTAGTCATCGGCGGCGATAGC
GTCCCGGTAGGCCTGCTCGGTCTCCTTCTCTCGGCCGGGCTG	GCGGGACAGAAGTTTAGCCAATCCCTCGGCCGCGCGGAGATCTTCAGCGGCGATAGC
GTCCCTGTAAGCCTGCTCGGCCTCTGCCTTACGGCCAGGCTG	TCGCGCCAGCCACGAAGCGAATGCGTGTCTCGCACCAGCGAACCCGGGTCGCGCACCGCTGCCATCTGCGGTGACTGC
CTTCCGGTAAACCCGCTCAGTCTCTTCTTCGCGACCAGGCTG	GTGGGACAACCACTGTGCGAACATGATGAGCGTGTCGGCATCGCCGTCAGCGATGGC
GTCCCGGTAGGCCTGCTCGGCCTCTGCCTTACGACCGGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038514915.1\|4795412_4796570_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NZ_CP008953.1\|WP_038514925.1\|4809385_4809637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514909.1\|4791620_4793249_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|235000
NZ_CP008953.1\|WP_038514903.1\|4788755_4790036_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP008953.1\|WP_038514906.1\|4790032_4791607_-\|succinate-semialdehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|236501
NZ_CP008953.1\|WP_148311549.1\|4803870_4804113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514928.1\|4810149_4812756_-\|DUF3893-domain-containing-protein	unknown	unknown	gnl\|CDD\|372436
NZ_CP008953.1\|WP_038514911.1\|4793365_4794205_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_CP008953.1\|WP_084098285.1\|4817328_4818555_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|254756
NZ_CP008953.1\|WP_037336569.1\|4799182_4800205_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
NZ_CP008953.1\|WP_051972834.1\|4815961_4816975_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380126
NZ_CP008953.1\|WP_038514914.1\|4794249_4795416_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP008953.1\|WP_148311547.1\|4797076_4798450_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038523628.1\|4818551_4821683_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|235032
NZ_CP008953.1\|WP_084098281.1\|4805301_4806411_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP008953.1\|WP_038514920.1\|4798446_4799106_-\|trypsin-like-serine-protease	unknown	unknown	unknown
NZ_CP008953.1\|WP_038514918.1\|4796670_4797015_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_148311551.1\|4806530_4806797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_148311550.1\|4804781_4805309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_084098283.1\|4812752_4815965_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_038514915.1\|4795412_4796570_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	4.71347e-107
NZ_CP008953.1\|WP_038514909.1\|4791620_4793249_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	6.75031e-162
NZ_CP008953.1\|WP_038514903.1\|4788755_4790036_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.42297e-151
NZ_CP008953.1\|WP_038514906.1\|4790032_4791607_-\|succinate-semialdehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|236501	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.	0
NZ_CP008953.1\|WP_038514928.1\|4810149_4812756_-\|DUF3893-domain-containing-protein	gnl\|CDD\|372436	pfam13032, DUF3893, Domain of unknown function (DUF3893). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is typically between 123 and 144 amino acids in length. There is a single completely conserved residue E that may be functionally important.	9.20218e-41
NZ_CP008953.1\|WP_038514911.1\|4793365_4794205_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	8.17069e-109
NZ_CP008953.1\|WP_084098285.1\|4817328_4818555_+\|TIR-domain-containing-protein	gnl\|CDD\|254756	pfam08357, SEFIR, SEFIR domain. This family comprises IL17 receptors (IL17Rs) and SEF proteins. The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (pfam01582), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways.	9.17859e-09
NZ_CP008953.1\|WP_037336569.1\|4799182_4800205_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	1.13436e-41
NZ_CP008953.1\|WP_038514914.1\|4794249_4795416_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	3.78033e-127
NZ_CP008953.1\|WP_084098281.1\|4805301_4806411_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	7.67671e-18
NZ_CP008953.1\|WP_038523628.1\|4818551_4821683_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|235032	PRK02362, PRK02362, ATP-dependent DNA helicase.	3.4827e-67
NZ_CP008953.1\|WP_051972834.1\|4815961_4816975_-\|hypothetical-protein	gnl\|CDD\|380126	pfam18154, pPIWI_RE_REase, REase associating with pPIWI_RE. Restriction endonuclease (REase) domain family, found in a conserved three-gene island that also contains a DinG-type helicase and the pPIWI_RE module. This three gene island is predicted to form a conflict system which targets R-loop formation of invasive plasmids during plasmid replication.	2.94803e-15

>NZ_CP008953.1|WP_037336569.1|4799182_4800205_-|LLM-class-flavin-dependent-oxidoreductase
MKKIGFLSFGHWSPSAHSETRSAADFLHQSIDLAVAAEELGVDGAYFRVHHFARQAGSPFPLLSAIGARTSKIEIGTGVIDMRYENPMYMAEEAGAADLISRGRLQLGVSRGSPEQVIDGWRYFGYGPAEGQTAADMARQRTEVFLKLLEGEGFAQPNPRPMFANPPGLLRLEPYSEGLRERIWWGSSSNATAVWAAEQGMNLQSSTLKDDETGEPLHVQQRKQIEAYREAWKEAGHSREPRVSVSRSIFALTNDLDRAYFGRDRDSRDQVGMIDETTRAIFGRSYAAEPDELVRALKEDEAIEAADTLLLTIPNQLGVEYNAHVLESILTHVAPELGWR
>NZ_CP008953.1|WP_038514920.1|4798446_4799106_-|trypsin-like-serine-protease
MRLPRSLSCLVLALGLALPSTAQASAPAPLGGGSVLQSSAATRCTAGFAAVSGKTGYLIASSACGKPGDTIRSAGRVVGVVVGAQTPPTGAIVIRVTNTTDWRLVGSIPPTQPRVTITGSVEAPVGASVCRYGATTGWHCGTIQAKNVSISFPEGTLTGLTRTSVCAEPGDNGGPFVSGTQAQGVLIGGSGNCSSGGSTYFVPINRILSAYGLTILAGP
>NZ_CP008953.1|WP_148311547.1|4797076_4798450_+|hypothetical-protein
MARRGLVFLALLTIFLGLMVPRASADCPVARYEGDLEGARYLVLVPENWNGTLVLWSHGMYSVAYPEPDRIALTSQPATESFLLAQGYALAASQYRTVRGWSIEEALTDQTRLHDWFTHTIGPPRRTIAAGESVGAITATLLIERNPRRFDGLMTFCGTLAGGAAHWNSSLDVGYALNTLLDARLQLVRITDPAANVGRFVDVAQAATANPGGRARLALANALAEIPGWLDATQPRPQDVADQVFWQGVWDRFYRAGAFGIDRVALEQRAGGNPSWNVGVDYRRILAKSGERTLVERAYAEAGLDLGADLDRLAKAPRITPDPAASAYLARFGLPLGRTPVPVLTMHTVADGTAPAAHERAYADRVGPGDELRQLFVNRAGHCVFTASEEITALRTLERRLDSGDWPSTRPATLNAEAGTLAPEHQTIFDIVREARVTTTPAFARHSPPPYPRTLPF
>NZ_CP008953.1|WP_038514918.1|4796670_4797015_+|hypothetical-protein
MRTRTAFLSLVSAVALCFTIPAVASAADGEFTYRYYDEDEEIQVGTLVDPDDGECIEIPEIADWDVDAFRPRNDTDSTAVVFLDDDCSSDSYFSLRPNGGRGSDRLLFRSVIFS
>NZ_CP008953.1|WP_038514915.1|4795412_4796570_-|acyl-CoA-dehydrogenase-family-protein
MYTGNPDVPDDVFADVLSQISDFVRTRVMPRELEIMNTDAIPADLRAQAAEMGLFGYAIPQEWGGLGLDLVQDVEVAMALGYTSLALRSMFGTNNGIAGQVLVGFGTREQQARWLPGIASGEVVASFALTEPGAGSNPAGLRTSAKPDGDGWVIDGGKQFITNATEAGLFVVFARTDTGIAVFLVPADAPGITVGAKDAKMGQEGSRTADVTFSQVRVGPEALVGGDGEVGYKAAMTSLARGRIHMAGLAVGTAQRALDESVAYAASATQGGTPIGDFQLVQAMLADQQTGVLAGRALAREAARAYVTGEDRRIAPSAAKLFCTEMAGKAADLAVQVHGGSGYMREVAVERIYRDVRLMRLYEGTSEIQRLIIGGGLVRAEKKKA
>NZ_CP008953.1|WP_038514914.1|4794249_4795416_-|CoA-transferase
MTRPLDGVTVVAVEQAVAAPLATRNLADLGARVIKVERVDGGDFARAYDHAVHGSGAHFVWLNRGKESLAVDLKTGEGRDVVRRLVAKADVFVQNLAPGAAERLGFGDLRADHPELVVVNLSGFGAGGPMERRKAYDMLVQAEAGLIAITGTPDAPAKTGIPTADIASGMYCAQAVLAALLRRWRTGEGATIEVSMLEATVEWMGYALNTRMYAGTEPERMGLSHSSIAPYDAFPTRDGQMLIGVQNDSGWRTLVTDVLDAPELADDPRFTTNVQRVAHRAECDAAVAAKTSLWSNSELDDRLAAAGVPAAQLKDVGQVADHPQLRARDRWRKVGTEFARIDALLPPVTFDDFEACMGDVPALGEHTHALLVESGVDADDYLRRGIAR
>NZ_CP008953.1|WP_038514911.1|4793365_4794205_-|LLM-class-F420-dependent-oxidoreductase
MRFAIKTSPQDTVWSDMLAVWQAADEIELFESGWTFDHFYPIFSDSTGPCLEGWVTLTALAQATKRLRVGTLVSGIHYRHPALLANMAATLDIVSGGRLEFGVGAGWNEEESGAYGMELGTIKERSDRFEEACEVLVGLLTQETTSFQGEHYQLTDARCEPKGVQKPHPPICIGGSGEKRTLRTTAKYAQHWNFVGGTPEEFAHKREVLHRHCADIGRDPKEITLSSHVRLGADGDYAKVAAEAEALGEVGLDLAIIYLPPPHTPAVLEPLAKALEPLR
>NZ_CP008953.1|WP_038514909.1|4791620_4793249_-|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MANRAARGDEADYVVVGSGSSGAAIAGRLAEAGASVILLEAGKTDEKMLVKKPGLVGPMHAVPQLKKPFDWGYYSVPQKHVLDRRMPVPRGKVVGGSSSINGMVYVRGNRANFDSWAAEGNKGWDADSVNAAYKRMEDFEDGENDFRGAGGPIRVTRNKTPQEGTLQFLQATADAIGCDILDDYNAESQEGVSRMQQNAADGLRYSASRGYIHHLAPATLQVQSGVLAKKVVIENGRAVGVEVVDANGGQRILRAGKEVILSAGFVGSAQLLMLSGIGHAEHLKEHGIDVVADLPVGDNLHDHMFHALTFRASSSKNRGTPPYFARGLVSELMRPGTTFLANSVFEAVAFLKTSQAAEVPDLQLHLLPWAYVTPNQDAPIRHDVDKRPALTVLTTLIYPRSRGTLRLASADPTAAPLIDPQYLSDPGDLEVLGEGSEMVREIFASKAFNGSIKEELHPGKALQGQELRDAILNRATSVYHGVGTCRMGVDELAVVSPDLRVRGVEGLRVCDASIMPSITGGNTNAPAIMIGEMGAQLVLSDN
>NZ_CP008953.1|WP_038514906.1|4790032_4791607_-|succinate-semialdehyde-dehydrogenase-(NADP(+))
MTVTPLALTRPASVTDAFLQRLVARVPGSSGVTWKLTEVYTGEVLVELPQSTPADIEQAFTTARAAQEKWAATPLKRRLEVFKRAHTLFVDNAPAVTDLIQVESGKNRRMAIEETCDPAMVMSHYLTRAAKLLAPAKRGGPVPFLTTSTEIRQPKGVVGIIAPWNFPFATGISDAVPALMAGNAVVLKPDNKTALSPLYGVELLEQAGLPKGLFQVVCGEGPDVGPTLIGQANYVMFTGSTATGRVIGEQAGRNLIGCCLELGGKNPMIVLEDADPDETVQGAIFGAFGNTGQICMHIERIYLPESRYEEFKNAYVAKTKALDVRAAYDFGPDMGSLVSVDHMSRVKSHVDDAVAKGATVLCGGKPRPDLGPAFFEPTILEGVTKDMLCGVTETFGPVVALHKYRTVDEAVALANDTEYGLNASVWGGDVGAARAVAARIESGNVNINDILATAYASKGTPSGGVKNSGVGARHGDQGLLKYTDVKNVAVLKKQVMGPRGGQTYEKYVEGMLSGLKLMRRLRIR
>NZ_CP008953.1|WP_038514903.1|4788755_4790036_+|MHS-family-MFS-transporter
MTVRTDTQSLRRARRAGLAAFVGTTIEWYDFYIYATAASLVFGTVFFPATGDRLTGVAAAFATYAVGFFARPLGGIVFGHVGDRVGRKTALVITLTMMGAATFLVGCLPGYGQIGTWAPILLVVLRFVQGLAVGGEWGGAVLMAVEHAPPGKKTFYGAFAQAGNPAGALLATGLFSLLSTGGTEWLATWGWRIPFFASVLLIGVGLIVRLKVEESPVFEETVEETGVPILYAVRTNWKPILLGICVLPVAVGGYYLVTTFATAYATDPAVGVSESLVLNALTIAAFVELVVSFGAAWLGDRFGRVRVVVIGLVGVAVLAAPQFLVLSTKNAVLIIAAFVAMRLAMTATYSPIAAILSQMFWPRARYTSISLSYQLAGALFGGLSPLVSTLLFQATGSVWPAIGLLIGMCVLSIACVLAAPQHTDEV
>NZ_CP008953.1|WP_148311549.1|4803870_4804113_+|hypothetical-protein
MGSKPIALLSSAVGGTALLPVLPVWCVVTVALVAVALAAVRVIVTQVIRLRASSELTTSAHALRVLELENGSGSAASSQP
>NZ_CP008953.1|WP_148311550.1|4804781_4805309_+|hypothetical-protein
MTARLFDGMPAVWPQELNYVRWRHRVATQLDVDPMAVQLVGSARLGYSMNPRKEYKRFDEDSDLDIAVVSLELFDKAWSELRHIIDNQSLEGKKNYLRKLVFEECIALDIVLPHLSFGEQWSQARDLFIQDLGRDFRNCSVNYRLYRNHRSLRSYQLKSVSTARDRAIEEGVGHG
>NZ_CP008953.1|WP_084098281.1|4805301_4806411_+|DUF262-domain-containing-protein
MADHALKFEIESKTVAEFRALDKSGELILRPEYQRKIVWPDRAKVSLMETILLGYPIPEIYLSYETTPDGEQTASVVDGQQRLTALLEFIKNKYTLDGLEAGSLREKFEGKYFKDLPDEVRQEFFQYRFPIRRLSNLADEFVRAVFARVNRVNMVLTEQELRNALLPGPFSDFLKDCATHSISRVSGVFSGERRNRGGDLEFFAEVFGTCIFGLSNKKAELNERYDKISADFEDYRDRSEEFVRLLDFLSGTVKWAGRTRWSNIVDMFTLLHVSWNLRSLLFEASTEQATQLRDVLDLFQRAVSSHKRSGEKSDAEELISTLAETLDLPTESIKDTIEEYTSGIRNSSDLGSRRIRSNKLQVVFSRNFD
>NZ_CP008953.1|WP_148311551.1|4806530_4806797_-|hypothetical-protein
MTTKVHEELREGLADETAKNGTYDKSDGNSWDGLEQVPAYIKPESLPEELRPAYIVATTAPEAVLALARRAAGYGETASIRRGARYSR
>NZ_CP008953.1|WP_038514925.1|4809385_4809637_-|hypothetical-protein
MPVELTVVIDRESRVTEFSIGISYKSCLGCKVIRALQLKEQQLLTNLCPVLEVPLFDVPDLVAVNLEVSDFPHTVPDVQSEQV
>NZ_CP008953.1|WP_038514928.1|4810149_4812756_-|DUF3893-domain-containing-protein
MTGDKELSLLAYPLTEVLHGTAHVYRLPSSVDDAWNRLRTRYRMKVRANVNLPYSGLATALRAYSGACVNLFPPSKDQAPERLVTSAPLDRRDVHDAVVLWEQVVLGVPNEEIVFDYLSELADLIADSAVEQVSLAEQVHHVGDQPDAPNWVYDAATWECARRLASVPWRVDGREVPLRADTDGNLVVWADQALWSSAWKEGGELCYAALRIRLLMKTLPGVQTPVVVVDPSVSRLSRWLGGTRSAWLAPRCVEDPLLCLAVEGRGRAARIEVTSGIALSVSHRLRGENLLEPGDLDLAGTPGRLRALVPKSVRFPIGRGVGMYTVRELGRHAAEAFGVPNVTAREVRGHKFSAQAKRVVTAGRDADMLDESGLPAVIKASGGERLRVLALYRTQRTRARLQRLLAHHFARPDLSEGAPEDTVVQAGAHVEVVFHHAASLLAHGSGHRERAAALNQVPHLVAQDGTRVLALCETEFDGQPLDEDAKPVVSRILAERGVLAQFLATAEAAEDPAKDHAGNNAVADLLRAAGLVHPRLTTALASGSLGTPDPITYVGLHVRAQRGEVWTKGAPKLGWSLVAMIPDGEHWRTLAYQFAPHPKTGRGTGWEDYFTANTAFRAHPLPGGKRQDESLVAAIDTALGQLRPHVATGAGYVVMVSGDSSRSLWPLLANKNLDIEPDAAGRVGNRPALPGWNPALGHRPRAVVRVTSGTRDLPRPVEVRKPAAEAGKDPRIVKTTRSLYRLDGSASANTWILANVPRQFAGSGRHSRAGLDSGRWSTDAQTGKHTWYAHTSTEIVVVGSDSDPQRYAVAAARLCDHAVSWDGRTSYPAPVHLAALMDRNHPEYRRTVDWNDETQYEETADATSYQFR
>NZ_CP008953.1|WP_084098283.1|4812752_4815965_-|hypothetical-protein
MTSAPSGIATQIACALAEEFFGFPDPDGRMTVPLDAAALIAGGRLDLWRAWDGQPEATKRLVGRFLRIRPNEIGAPRRFLEGARALCTDPDSPYVGPDDVPADELVAVVARHGQRPLDLVAHLVREAEEKYAQNRSPLSVAGPGRWTFGWRGESIVDLPAAVANAAVDPISLDTTPFLGDLAVKTGQLLQLAAEIAQCRGEKNWQEEVLRELFAGLRDDEDVPVAELLLRSGRTRLLNAPTGVGKSVLIRLLAEHLARSGIAVAIVVGTVHEALETVGKITGDLRVLQSPRSCRALVSPRRLAEKAEHSAKRGQWDRFDALGYGCALTALVVDGPQPLAPDEPCTGLRPVVEQSDSQLKRQPSPRHACPYLGVCGRHQGLREAASADIIVTNHHNFVDGSVPVPVRVDGVDLNRLPVREFLLRRCAVLLVDEVDMLQSNMFDAGARQLKLAASGTATELPLVRLDTERSMLLPAEDRAVVPPLTRTRFLADQFLNYVLEGELWLGDERPTAPRSRKSVPDSVDSGWHLPGSRDRMLLTHLFGIADRSEDTSDDVPAEVYQQFNSLFPDTGGAGGTELPAWLGKVAGLLASAVSNDSGQDRIREIRHRLHEVLTEHIAAPDYRRDVINALLVRTWLGALHQALTRLTFAVAAPGTEMPAARALAEQLGTVAQHQAIPYGPLGYLLFGFRIERVEDPRPGGTLSVQAVGGDPHTTVVQLGGMVALAAAGVERQVLGLSATAYFPGAAREHIRTPVTYAMTDAKPGAFTTRSGQALDARTETTIRIGGRGESGKPAAIRELGEFLWDQHLDQHLQLLAATDPDRELCMLVGNSYRHAALLAAGIANRILDRGWLAVVVPRSGAPSSVVLPTEVVTLTIDELESLPVLHPEVKVCIAPLSLVARGLNILVPDDQRSALASVWVCVRPPTQLTDSAEMFASVNGHALGESRSGVDPVATWVEQRKRAFSRLFRILTSDPRFSRLNRTLKAEVVAGMLVDMIQLAGRARRGGTPVELYLTDGAFHDPKYGTDIPGLLGYYHENLKPVEQRELRRIYGSTLVSWLDFAGIGAEEVRP
>NZ_CP008953.1|WP_051972834.1|4815961_4816975_-|hypothetical-protein
MTCLGVLAATHPLGRAPSMARFRAGLSEPVGALLPRDVDTSGIAEVVLLDAEGRFTDEAEDLCAEFLVPSAALDQFWPWDRMASEQEERRIYEVLRRLTEADYVRLRAELVEQPVGDLRTLRRTWGSLLPQFYEPVADWPWRQVRGWFFACPDCRWPMRVLGKGSIVDVRCEAHARRGVMYTCRVENRTGKAPELHPAGERARLVPAQPATKESLAVSRVVWRYVTLPGLLECGIRDHAFGLGADVEMWPHRDRYDLEIELGGQSWCVDAKAWASPVALGEALRGTRPAAPGLVIVVPDHQRSSLDLLQHMIGGSGYRAATMKGILAELDDAATVSA
>NZ_CP008953.1|WP_084098285.1|4817328_4818555_+|TIR-domain-containing-protein
MVIRLFSLSLVSRRSEGAGMQPEEGTDVKLVLVDPGGRRIDAGPAEVASGSVRLGRWHVHPVKEANQAFRDTSAHLVKINYDLYVDPGAPVVRWFEIGFVLADSDATVVAALPHGAAESRPATSYQLSRNLEFIPVDNGAAHVHVPPVEGPVHVYGASGDVIRWLHVAPGRAGVRPGSYSAWIVLLTPAGRTEQKFRLAARFETDFADGEDFQPVPKSTEFGISLTGSSRSAAVEAEEHDEPGVGLPRSSPRVFICYAHEGETHKKKVRDFADLLRENGLDPRIDEGQEGPRTEWDHWALREIREADFVAVIASPTCRAVGDGTYRGNDRAGIRSELGVIRNLLQKHPRWASHLLPVVLPGCSVDDIPMFLHPVTMDHYIVEALTETEIEYLLKTIRTTPPWPGWDRS
>NZ_CP008953.1|WP_038523628.1|4818551_4821683_+|DEAD/DEAH-box-helicase
MTGSFHGLFTGIDRYRDPGFRRLNFAGRDAGVLHALFSDNVSGDCVLLENEDATRDRLTTELRRLAEVAGGDDVVVITFSGHGTRSRELATHDAVPGNFAETALPLTRFVDLVRAIRARLLVVVLDCCFSGGMLARAFGEPDDGNSARSDGAGAWEILQSISGDGRIFLGAASADEEAFESARYRHGILTHHLVQALMGEGVLDDRGAVCLSSLVKQVLDRVTADETGVGRRRQHPTFEGTMRRTRFPPLIPGPRYREIGGHTQPPPATKDLMSLLPYGIPAPVAEQWRARVDKLNDVQVSAVHRGLLRGCNVLVSAPTASGKTLVGELAALYATTQNRKAVFLLPSRALVNEQYQRFQQAYTPLGLRVVRATGAVRDQVSDLITGSYHLAVATYETYIGLLASHPRLLTGVGVLVVDEIQSLLLSDRGPRLELLLTRLRRAAHRNLPVPQLVGLSAVLGQADRLAAWLDASLVPFTDRVIPLCEGVLGPDGTYLHRLHGGKQAQVAEAEEQLLTTSGLVAGDDLAERLVGKLVAQGDRVLVFRSSRIGARAFARRLSDRLDLPTAESVLSALPQGDVSRVGEMLRDCLGGGVAFHSTDLGEAEQQAVVEGFCGKGGPIRVVVATTTLAQGVNLSADSVVVCELEHPGRPGRPYTASEYKNMAGRAGRDAAKDVPGRAIVLSNGSVDTQRIWRSYVNARPDPACSALFGASLALPSLVLTVLKCLADEPGDADATGVADFLAWTYGAFQSQHDHTSGPFSFANVHSVVASLVEDGFVIAADNGYGLTPLGETTVRSGLDVESARVLVGALRRVADTELTRMTLLGVAQLITEVDDVRFTKPSVNWQREYDEFARQLPRQRCAPAVAAALLGPRSQGGAEIGRCRRALACLMWSNGRPISKIETALTLHLRPQAGIRDPGPIAHAAQRTADVIRAVVDIARHLHPESDLTDLAELLPWQLSLGIVKGLVPVARHLDRRVEREVYLRLDQSGLTDPAGIASADTVQLLQCAGNENLAAAVRAAAEAAVAEANQPALDDLIDPPED

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_4

4939551-4939805

Orphan

Consensus_repeat	Method
TCCCCCGGCGATTCATGGCGCTGCACCGGCCGCTGCACCGATAGCGGTCCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP008953_4

>merge|NZ_CP008953|4|4939551-4939805|PILER-CR
CCCCCGGAGACTCATAGCGCTGCACCGGCCGCTCGACCGACAGCGGCCCTACTGGCGACTCGTCATGCAAACGCCGCACCGGCCGCTCAACCGAAGCAGGCTCCCCCGGCGATTCATGGCGCTGCACCGGCCGCTGCACCGATACCGGTCCCACTGGCGCCTCGTCGCGCAAACGCTGCACCGGCCGCTCGACCGAAGCAGGCTCCCCCGGCGATTCATGGCGCTGCACCGGCCGCTGCACCGATAGCGGTTCCG

>NZ_CP008953|4|1|4939551-4939805|PILER-CR
CCCCCGGAGACTCATAGCGCTGCACCGGCCGCTCGACCGACAGCGGCCCTAC	TGGCGACTCGTCATGCAAACGCCGCACCGGCCGCTCAACCGAAGCAGGCTCCCCC
GGCGATTCATGGCGCTGCACCGGCCGCTGCACCGATACCGGTCCCACTGGCG	CCTCGTCGCGCAAACGCTGCACCGGCCGCTCGACCGAAGCAGGCTCCCCCG
GCGATTCATGGCGCTGCACCGGCCGCTGCACCGATAGCGGTTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038515075.1\|4948659_4950648_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NZ_CP008953.1\|WP_038515056.1\|4931187_4932162_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NZ_CP008953.1\|WP_038515054.1\|4925246_4926566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224387
NZ_CP008953.1\|WP_038515067.1\|4941159_4941600_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038523674.1\|4927171_4931170_-\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|274305
NZ_CP008953.1\|WP_016333594.1\|4938118_4938565_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP008953.1\|WP_038515061.1\|4935538_4937359_-\|VgrG-related-protein	unknown	unknown	gnl\|CDD\|273730
NZ_CP008953.1\|WP_038515069.1\|4942063_4943605_-\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP008953.1\|WP_037344451.1\|4941604_4942048_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274049
NZ_CP008953.1\|WP_038515077.1\|4950644_4951304_-\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NZ_CP008953.1\|WP_038515063.1\|4937351_4938116_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP008953.1\|WP_037344464.1\|4934662_4935073_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NZ_CP008953.1\|WP_038515057.1\|4932165_4932705_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050
NZ_CP008953.1\|WP_038515071.1\|4947093_4947792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038515082.1\|4952067_4952988_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270702
NZ_CP008953.1\|WP_038515059.1\|4932701_4934663_-\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NZ_CP008953.1\|WP_037344462.1\|4935074_4935356_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269824
NZ_CP008953.1\|WP_083649694.1\|4951506_4951998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_016333592.1\|4941004_4941163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038515073.1\|4947806_4948547_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_038515075.1\|4948659_4950648_-\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	6.8476e-28
NZ_CP008953.1\|WP_038515056.1\|4931187_4932162_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.0021466
NZ_CP008953.1\|WP_038515054.1\|4925246_4926566_-\|hypothetical-protein	gnl\|CDD\|224387	COG1470, COG1470, Predicted membrane protein [Function unknown].	2.3591e-05
NZ_CP008953.1\|WP_038523674.1\|4927171_4931170_-\|PD40-domain-containing-protein	gnl\|CDD\|274305	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.43189e-29
NZ_CP008953.1\|WP_016333594.1\|4938118_4938565_-\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	4.90651e-34
NZ_CP008953.1\|WP_038515061.1\|4935538_4937359_-\|VgrG-related-protein	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	7.50521e-17
NZ_CP008953.1\|WP_038515069.1\|4942063_4943605_-\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.33278e-62
NZ_CP008953.1\|WP_037344451.1\|4941604_4942048_-\|phage-tail-protein	gnl\|CDD\|274049	TIGR02241, hypothetical_protein_SCD8A.25c, conserved hypothetical phage tail region protein. This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.	7.78101e-40
NZ_CP008953.1\|WP_038515063.1\|4937351_4938116_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	4.28709e-07
NZ_CP008953.1\|WP_038515057.1\|4932165_4932705_-\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	9.70762e-24
NZ_CP008953.1\|WP_038515077.1\|4950644_4951304_-\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	4.93063e-46
NZ_CP008953.1\|WP_038515082.1\|4952067_4952988_-\|phosphotransferase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.38913e-08
NZ_CP008953.1\|WP_038515059.1\|4932701_4934663_-\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	2.71693e-128
NZ_CP008953.1\|WP_037344462.1\|4935074_4935356_-\|PAAR-domain-containing-protein	gnl\|CDD\|269824	cd14739, PAAR_3, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	3.11543e-27
NZ_CP008953.1\|WP_037344464.1\|4934662_4935073_-\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	2.00943e-33
NZ_CP008953.1\|WP_038515073.1\|4947806_4948547_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	2.93011e-34

>NZ_CP008953.1|WP_016333594.1|4938118_4938565_-|phage-tail-protein
MPDAEEAVAVCYVVKLDDKNLGNLGAFSSCDGLGCEFVMEQREEGGNNGMVWQLPTRIKYSNIKLSRPVTEASSQITKWFAGMAGGIERKTATIEARTLDGTVIASWSLEGVVPVRWSGPQLSPDSPKVATETLELAHHGFLSPAKKG
>NZ_CP008953.1|WP_038515063.1|4937351_4938116_-|LysM-peptidoglycan-binding-domain-containing-protein
MSSPVTFTSAGSQPPAAYGSGEPAPNNLQRALLEVRKPPQSGGTGQPGAKLFEIKFQFNPKELSLTKNAKWGRDPQRNAKKSGPPEFKGSDPCKLALEMFLDATDKMDDAVVKKVEQLFTCCVATEESRQHGKGSPPWVIFKWGGMTGFPAYVASVTAKYTLFTPSGTPVRAVCTVNLEEIAGELSGQNPTSGALAARDTHVFVAGDSLQAVAFRAYGDAGKWREIADANDIDDPMRLRPGTRLLVPALEELDG
>NZ_CP008953.1|WP_038515061.1|4935538_4937359_-|VgrG-related-protein
MANESFANNLIVEVAGGPLPDDVKTLLSYAYVDDSRNLPDMFVLRFRDSGHVVLDKGKFTVGAQIKLKVQTSDPEAPQELLSGEVTAVAIDLDRIGTFTEVRGYDHAHRLFRGRRVAVYPGMTLADVVTKVTRRAGLKVGKIDQVPGVGGRPHTQFSQDNVSDWDFLSRLAESVGAQIAVREGALNFRLAEKPSAAPATTAKANTDPLVLEAHRTLVSLRASVTAAEQVPEVEARGWDVTTKKPVVAAEKPKNAGTEVEGVDPVALANKFSSPKYVSADTPRRTQAEAKAAAVALSERLGGACTELDGVAKGNPKLRAGAAVTLTGVGKPFAGKYTLTSTRHLFNAEVGYTTEFAVSGRQERSLYGLVAGGSKTSAWPGVVPAVVSDAKDPAGLGRVKLTFPWLDQNFTSNWARTVQPGAGNGRGAMVMSEVGDEVLVGFEQGDFEAPYVLGGLYNGVDAVPKFTAPPIDGNSGEIAVRGFVSRKGHKLEFAEQDGIVVASGDGKLVVKLDQKNQMIEVTSGKGVTVKARNGVSIDAGSGPLELKGQKVSVKSATEATVEASSSLKLSGTAGVNVEGATVSVKGQGQTELTASGVVTVRGGVVKIN
>NZ_CP008953.1|WP_037344462.1|4935074_4935356_-|PAAR-domain-containing-protein
MPPAARVGDPTGHPGVIAGPGVPTVLIGGMPAATVGTLHTCSFPPPAVHPPTPIAPPGCPTVLIGGLPAARMGDLAACGAPIVLGCPTVLIGG
>NZ_CP008953.1|WP_037344464.1|4934662_4935073_-|GPW/gp25-family-protein
MDFLGRGLAFPVRTDATGSIALVGGEREVVESIRLILATAPGERPMRPEFGCAVHDLVFAPADSATAGQIAYEVRTALERWEPRITLTDVVVGFSEAERGTLLIDIKYQLRGTNDPRNLVFPFYVIPPHESIQDGA
>NZ_CP008953.1|WP_038515059.1|4932701_4934663_-|putative-baseplate-assembly-protein
MSLPMPNLDDRRFQDLVDEAKYLVQRNCPEWTDHNVSDPGVTLIETFAQMVDQVLYRLNRVPDLHYLRFLDLIGVRLFAPTAARTDVTFWLSAARDVPVVVSAGKQVASVRDEVEDPVVFTVERTLTIVPCSLAGLATGDADPGVPPVDRTDELLVGGEPACFAENPAPGDIVYFGLSDAVPGCAVLLRMDCEVEGQGVDPHDPPWVWEAWDGHGWAAGEIDRDSTGAFNRPGDVVLHVPPGHTASVLAGRHAGWIRCRLTEPKQNQPFFQRSPRLRSVEASTIGGTVGAVHAEVVHGEIVGTSDGLPGQRFPLGRRPVVAGGDELIVEVSGPDGWQEWTEVSSFAESGPEDRHVQLDRVAGEIAFGPAVRQPEGGVRYYGAVPAKAAAIRVPAYRAGGGRRGNVAREVLEVQRDPIPFVSTVVNRRPATGGVDGESVRDAAVRGPLLLRTRDRAVTAEDYEQLAREAAPEAARVRCVPAHGPDGRETGAIRVLVVPAVPDTGELRFATLMLDPGMRTRIERYLDERRCVGALVSVEAPFYHGVTVVARLRSRRRTSPGSLGPRATQALYDYFNPLTGGPDGDGWPFGRPVQSGEVFAVLQRLPGVEMVEDVRLFAANPVTRERGEQVDRLDLPPHALAFSFGHQVRVRESDR
>NZ_CP008953.1|WP_038515057.1|4932165_4932705_-|phage-tail-protein
MRAAVPGLPSPHPIGEQLPSVYAEDRFVQGFTGALDEVLAPVFATLDNFSGYLDPNLAPEDFVGWLAHWVALRVDEGWSPVRLRELVTRSVELHRWRGTQRGLAEHVRLLTGGAVEVTDSGGVVASPEPGAPLPDPGPPWVHVRVRVPDRSRIDERRLTATVVDAVPAHVRVTVEVVEG
>NZ_CP008953.1|WP_038515056.1|4931187_4932162_-|zinc-ribbon-domain-containing-protein
MVIYRECGHQGPADVEFCGECGRYLKWDDEEPVAVRQPIAQAQVVQPAEPLAPVRQPQQRTVEEQVLRPGDLICGRCGKGNVPTRNFCGRCGASLAESEVVKTSWWRRLFRRGPREHKAGERPGKDGVRRRVGRAGAARRSVGKAVRRVIAVMLVLSALIYALYQPFRGAINTAAVGLWSQVTGIFETKLNPVRPSKVTANAQSPGHPGNLVSDNAKNTFWAATAQGEPVLVFTFDRPVDLRKAIVHSGNGANFQAAHRPKTLHLVFSTGKTYDMVLADTPDAQEIPIENSAGATSVELHVVGLHRSLDGMDVAISEIELFEAG
>NZ_CP008953.1|WP_038523674.1|4927171_4931170_-|PD40-domain-containing-protein
MRPNRAVAAIAFVAVLGGAAITGVLAPTAAQEPAPPAAPYRVGYVSAATTALFQASGAALPPGAGGVDSDASAGKGGLVWVSKRAVRDGAERDGEIWYLRDGTKVPVRLTDDATVDTHPALSPDGSSVAFVSERTGSKDIFVIGVDGRGLRQVTSGPAADDSPSWSPDGGRLVFSGTGEDPAGDLYTVPSGGGAPTRLTNDPAADTQPAWAPTGSRIAFTTTRFDPAGDVVVMADTGGAVTRAVPEPGDSSEPAWSPDGVRLAFTTRQPDPLGDVKQVAGGQVSVISALSGVGETEPTFRADGQPVFTQLRGGATTDIWSADARGGDRRDLTNRPDADEADPAFSPDGTSLAYTEFGTGESRNSQIVVANADGGAPRPLTAAERGKRERHPAWSPDATKIAFTRTVSAGEGSDSFVRIVRVADGRVLGDIPIPAHLRGDDSQAVWSADGAKITLTRAATRIGPPGPSRVDPATVDVPVGRGGSARIAKTVQTDRIRSLPDVVLLMDQTGSMGGVIEGVKTNLGTVIDSVREREKEANFAVVAFGDAKDPAPRPFYVQQPLTPAGTEAERKLLSDAFARIKADGGGDTAEDWLLALQKVATGAITFRPGSSRVVVLVGDAASHETPPNTRTEVIAALNAAKISVVAVPAVTGGSSTDPDRGLDARGQATAITSATNGVLTPDTDAGRISEAIIAGIGDLPVSVQPVSFCDPGLTMTFDPAGPQSVPGGTNARFTETATVSQTAEVGSFLRCRVEFRLNGEPTVRPGYTENVTVRVKDPALPLITLHDRTVTGTGPMVIEYPATAVDVDGSPLEPSCTPLSGSLFPVGATTVTCTARGKNGTAVETAVMAVASPGEERRKQLWQVTLTQPSPDVVVPGDQRDLSSLFGPGCGAGAESAADLSPDGATVAFQSGNALVCVAPADGGAARILVQRMGYVDDPAWSPDGGLVAYTNSPGESPPRIAVVPFAGGDGRTLIDGPGGASQPTFQRIPDLVVSTSAVPAAIPFEGLTTFEFVVTNRGATASPVVGLFVRLTAGLRPAAALPTKGTCTPELVCAFGTLVPGQEVRVRFGATGLVAGAQAATGTVTTAGPDADARNNSATAVVTVGEKPAPPVTPGSLSVGMSVSAVPLFAGGDDVVLTYLVHNGSQAPMPAVRLVTQLPPQLPATSAALGCVPGGGSCALGTLGPGQTVTLRISLAAKAAFEGQVSGTVSTTGPDNNAGDNTATARVVVRQPVVELDPKIGTLGFVPRVRGTDFPPGAVVRLAWSAGISAPGQVTVGADGRFEAYFLIFHHDLIGPRTVNVTSVGGPKFGTAASNPILVVLRTLQPPFITRG
>NZ_CP008953.1|WP_038515054.1|4925246_4926566_-|hypothetical-protein
MGATATLSEAGLVAEPGQEISCSVTIRNAGRVVDQFAIEVVGDPGAWATAEPATVNLMPGEAGTVVVRFSPPRSSDVRAGQIPFGVRVFSSEDPAGSVVEEGSIQLGAFTEVTAEVVPAKVEAGSKADFEVAVDNRGNHPVAVELSALDPEDELDFQLERNRADLAPGTAAFVRLRARPRKRFLRGQPVRHRFQVFVVADNAEPLKTEGTMVQRQLLPKWLLPALAALLVLLLALVTLWFTVLRPAVKSAAREAAQEQNQEVIKAAQDAGGAAGEAKKDAVQAKQNSEDAMKAVGLTPPPDGAPPGPRASNGVPNPAGNANGTPTDFRVAADAAVDSNVNRFAEFPYAVPDAAKTLVVTDLILQNPRGDNGTLRLLRDSGGTKTVLLEVGLANFRDLDHHWLQAWRFAPGEKIVLAVSCQTPGGGSRCTPSVSFSGRIE
>NZ_CP008953.1|WP_016333592.1|4941004_4941163_-|hypothetical-protein
MTYAAGRLHEEVAYVAYHLHWSLDDILDLEHHDRLTYVAEIARINTRMSEGR
>NZ_CP008953.1|WP_038515067.1|4941159_4941600_-|hypothetical-protein
MRRVMASAPAEEALVVPEAQARPKLRTEFAFELPRGYVDDAGNVHHSGVMRLATARDELVPLRDDRVRENSAFLTVVLLARVITRIGDVTDVHAGVIENLFASDLAFLQDMYRRINSEGHTRAGVACPECGHEFVVDVAGGRLGES
>NZ_CP008953.1|WP_037344451.1|4941604_4942048_-|phage-tail-protein
MALPDLDKAVGCSFGLEIDGVQIKQISEVSGLKMEQDVIELKQNTVDGKYVIKKLPGRPKAGEVTLTRGLTEDSSFEKWVKDAHFGKMGSARKGGAIIVYDYEGAPIKRYKLTNAWPKSLEIGALKAGDTSVLTEKLVVTYEQMEVE
>NZ_CP008953.1|WP_038515069.1|4942063_4943605_-|phage-tail-sheath-family-protein
MPTYLTPGVYVEEIEAGARPIEGVGTAVAAFVGFAADGPFNTPTLVSNWTQFTQTFGDFVEGCYLAQSVYGYFLNGGANCYIVRIGGPRGQENGAAPKAATRQAVLGGYRFVAKELTSGGQTGELTVEVTEPTGENPGDDRFTVLVKKDGKVVETHNVTTKRTKENVVTLVREKSSFITIEELATGGAVAKPDRGTAVLTEPPQPPPVPRRIAADDYVGDVADRTGFGGLEAIDEITMVAVPDLMAAHQRDLIDLDGVKAVQLAMIAHCELMGDRMAIVDPPPGLNPQEVRSWRMDQAGYDSKYAALYYPWVQVLDAASGTNTYVPPSGYMAGVWARTDATRGVHKAPANEVVRGVLALETHLTKAEQELLNPIGVNCVRSFAGKGIRIWGARTLSSDPAWRYLNVRRLFNYLEESILNGTQWVVFEPNDDALWARIRRTISAFLVMEWRKGALFGLTPDEAFFVKCDRETNPAEGIDLGQVICEVGIAPVKPAEFVIFRLAQMSGGTSLVNE
>NZ_CP008953.1|WP_038515071.1|4947093_4947792_+|hypothetical-protein
MTAFSRQTFADLYDEDSGETYEDLEFVRCKFRSCALSMARTPDTRTTVRRVTLRDCESSWCFVMSPILEEVTIDGLKSGSNPLFTQGALFHRTTLTGKFDSVVISPRADPVTYPDANGSLFDEAREEFYSRIDWALDIRHVEARSLEIYDVPASLVRRDPETQAVVLRESAAREDAWRSLDLGETWWPQVLETMLAQNYDQAILVTPLRDRHAAAFIDGIRKLRAAGVAEPT
>NZ_CP008953.1|WP_038515073.1|4947806_4948547_-|DUF4157-domain-containing-protein
MRGHSHDNDLEPSLRPKGDRVERDEGGLLGRAAAAGRTDVLGPAGLLDLQRAVGNAGVSTLVEEERSPVHDVVGSGGGAPLDAATRTDMEGRFGHDFGDVRVHTDGAAHDSAKSVNAQAYTVGSNIVFQRDKYDPGSDSGKHMLAHELTHVVQQRSGPVDGTDAGGGVKVSDPSDRFEREAVANADRLMSAPAPASAVQRCEDGGHSAEDSAAVQREEAPEAEEGEEEKMAQTYVQREEETEEEAS
>NZ_CP008953.1|WP_038515075.1|4948659_4950648_-|ATP-binding-protein
MSLEYLFERLARLEQRIRDAVESRRAADPNPDDPFRGLYLSNETIDALLEGHREPFPPFTDSVPGGRLYPLAERAGLTSVDVELLLVALAPDLDSRFEQFYGYLNDDVTRRRATAGLALRLCGVPEASAAGRARLDADAPLVTCGLLTMEDEERPFLSRTLRVPDRVVNHLLGDDRLAPELAGCAHLGTRGTDVAGADRLIRAIRGQVGLVYLREHPGGGAEELGVAALTGAGHPALVVDAARWQAESRHGELTGSLVREALLRGAGLVLGPVDDSPRLEKLAHPAVPFVVHGTGAWDPRWSAIPPLQLDAFPLSAASRVDLWRSHLDGGLAPDVDPGEATAHFVLGPGQIARAAKAASVTALADGGPVRTSHLRAGARSQNAAGLQRLARRIEPVVGWSDLVLPAGVLSLLDELAARARYRDQVLDEWRMRPGGGRGRGVTGLFAGDSGTGKTMSAEVIAASLGLDLYTVNLATVVDKYVGETEKNLERIFTEAAGVNGVLLFDEADAIFGKRSEVRDAHDRYANIESAYLLQRMETFDGIAVLATNLRANLDEAFTRRLDVIVDFPLPDVELRRQLWDRCLGARMPRADDLDLGFLAEAFELAGGHIRSAAVTGAYLAAEAGRPVAMTDLVGAVAREYRKLGRLCLDREFGPYLAMVTDG
>NZ_CP008953.1|WP_038515077.1|4950644_4951304_-|DUF4255-domain-containing-protein
MIHEVDEALRRLVRGETRRGSEIEVAFDAPNKEWAARRNAPTVNVYLYDVREDLRRRSRGLLNEYDQLGKVSARHLPPRHIKLSYLVTAWTQRPEDEHRVLSDLLLGLLAHDAVPESALTGSLAEMGLPVPMTVALPPPEDRAFADVWTALGGELKPSLDVVISAPVHSGRVVPAEQPPKEGLKLDAHDGELVGHHVAESGAVEGQRRVAMARTHRKSR
>NZ_CP008953.1|WP_083649694.1|4951506_4951998_+|hypothetical-protein
MFIGGLALLVFFGLAAIFPDVGSPSSSRRIKMPEEPAAFIFGALAVGGLLTAIGSVPHKIRFAADERGLWWRAGRKSDLIGWDEVRAVRGQEPRPRPQGDPNAKVILSALVFTTKDPYFESRHAKLFTRPSTPGPEVELRLPNSTIVRQLTQEIARVRPDLVA
>NZ_CP008953.1|WP_038515082.1|4952067_4952988_-|phosphotransferase
MELNDLPDWLPVWCAEHLGAGPVGVRFELRSMSTVFGLRLADGQDVVVKAREDDGRAASCVAAQTWLADKGFPCPRPLTPPVGGGALAVHAEEFRPGGELLPGDSPDVAARYAEVFARLMAGLAGLAVPPPLPNPRWSRWDHRDPGVWPSIRSLDELDQSAVPAYVVDTARRARERLLAADLPCVLGHADFEAQNLCWHGTEVWSVHDWDSLAWQPEAALVGGASGVFPKTGPARLPPIESSAAFLAAYQDHRGRRFTNEEQEVAWAASLWTAAHDVRWEALHGTAPKADDALRAQAAERLRRANA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_5

6038491-6038703

Orphan

I-E

Consensus_repeat	Method
GCGGATCATCCCCGCGCCTGCGGGGAGCAC	PILER-CR
GCGGATCATCCCCGCGCCTGCGGGGAGCAC	CRT
CGGATCATCCCCGCGCCTGCGGGGAGCAC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP008953_5

>merge|NZ_CP008953|5|6038491-6038703|PILER-CR,CRT,CRISPRCasFinder
GCGGATCATCCCCGCGCATGCGGGGAGCACTCCCAGGTTCCGCCAGGGTCTGCTTGTACGGCGGATCATCCCCGCACCTGCGGGGAGCACCTTCGATGCGCTTGCGCTGTCGATTTCCGGGCGCGGATCATCCCCGCGCCTGCGGGGAGCACTCCGTTGTCCGATGCGATCGGCACAACGGTGTCGGATCATCCCCGCGCCTGCGGGGAGCAC

>NZ_CP008953|5|2|6038491-6038703|PILER-CR
GCGGATCATCCCCGCGCATGCGGGGAGCAC	TCCCAGGTTCCGCCAGGGTCTGCTTGTACG
GCGGATCATCCCCGCACCTGCGGGGAGCAC	CTTCGATGCGCTTGCGCTGTCGATTTCCGGGC
GCGGATCATCCCCGCGCCTGCGGGGAGCAC	TCCGTTGTCCGATGCGATCGGCACAACGGTG
TCGGATCATCCCCGCGCCTGCGGGGAGCAC

>NZ_CP008953|5|1|6038491-6038703|CRT
GCGGATCATCCCCGCGCATGCGGGGAGCAC	TCCCAGGTTCCGCCAGGGTCTGCTTGTACG
GCGGATCATCCCCGCACCTGCGGGGAGCAC	CTTCGATGCGCTTGCGCTGTCGATTTCCGGGC
GCGGATCATCCCCGCGCCTGCGGGGAGCAC	TCCGTTGTCCGATGCGATCGGCACAACGGTG
TCGGATCATCCCCGCGCCTGCGGGGAGCAC

>NZ_CP008953|5|4|6038492-6038703|CRISPRCasFinder
CGGATCATCCCCGCGCATGCGGGGAGCAC	TCCCAGGTTCCGCCAGGGTCTGCTTGTACGG
CGGATCATCCCCGCACCTGCGGGGAGCAC	CTTCGATGCGCTTGCGCTGTCGATTTCCGGGCG
CGGATCATCCCCGCGCCTGCGGGGAGCAC	TCCGTTGTCCGATGCGATCGGCACAACGGTGT
CGGATCATCCCCGCGCCTGCGGGGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_051972614.1\|6032222_6032795_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_084098363.1\|6030980_6032156_+\|RNA-polymerase-sigma-factor-ShbA	unknown	unknown	gnl\|CDD\|236607
NZ_CP008953.1\|WP_051972619.1\|6047219_6048269_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP008953.1\|WP_084098721.1\|6035292_6036267_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_CP008953.1\|WP_162182771.1\|6030550_6030796_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP008953.1\|WP_038516826.1\|6033015_6033294_+\|DUF3892-domain-containing-protein	unknown	unknown	gnl\|CDD\|379026
NZ_CP008953.1\|WP_084098369.1\|6048258_6051429_+\|MASE1-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP008953.1\|WP_038516831.1\|6040640_6041696_-\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|239583
NZ_CP008953.1\|WP_038516835.1\|6042660_6043026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038516828.1\|6033611_6035219_+\|TROVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|368584
NZ_CP008953.1\|WP_051972616.1\|6043091_6043385_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP008953.1\|WP_051972849.1\|6043859_6044288_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP008953.1\|WP_051972617.1\|6044947_6045703_+\|GAF-and-ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|198080
NZ_CP008953.1\|WP_143202589.1\|6028937_6030452_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_CP008953.1\|WP_038523988.1\|6036911_6037244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038516839.1\|6044406_6044802_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP008953.1\|WP_038516823.1\|6028222_6028849_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_CP008953.1\|WP_148311585.1\|6045739_6046195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038516842.1\|6046392_6046743_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP008953.1\|WP_038516821.1\|6027378_6028122_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235527

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_084098363.1\|6030980_6032156_+\|RNA-polymerase-sigma-factor-ShbA	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	1.46514e-84
NZ_CP008953.1\|WP_162182771.1\|6030550_6030796_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.6939e-24
NZ_CP008953.1\|WP_084098721.1\|6035292_6036267_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.81003e-10
NZ_CP008953.1\|WP_051972616.1\|6043091_6043385_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	9.84233e-09
NZ_CP008953.1\|WP_038516826.1\|6033015_6033294_+\|DUF3892-domain-containing-protein	gnl\|CDD\|379026	pfam13031, DUF3892, Protein of unknown function (DUF3892). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 87 and 104 amino acids in length.	1.8303e-11
NZ_CP008953.1\|WP_084098369.1\|6048258_6051429_+\|MASE1-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.25299e-39
NZ_CP008953.1\|WP_038516831.1\|6040640_6041696_-\|acyl-CoA-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	1.97016e-49
NZ_CP008953.1\|WP_038516842.1\|6046392_6046743_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	8.26409e-17
NZ_CP008953.1\|WP_038516828.1\|6033611_6035219_+\|TROVE-domain-containing-protein	gnl\|CDD\|368584	pfam05731, TROVE, TROVE domain. This presumed domain is found in TEP1 and Ro60 proteins, that are RNA-binding components of Telomerase, Ro and Vault RNPs. This domain has been named TROVE, (after Telomerase, Ro and Vault). This domain is probably RNA-binding.	1.89038e-18
NZ_CP008953.1\|WP_051972619.1\|6047219_6048269_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00148285
NZ_CP008953.1\|WP_051972849.1\|6043859_6044288_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.44002e-24
NZ_CP008953.1\|WP_143202589.1\|6028937_6030452_+\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.15484e-61
NZ_CP008953.1\|WP_051972617.1\|6044947_6045703_+\|GAF-and-ANTAR-domain-containing-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	1.14882e-11
NZ_CP008953.1\|WP_038516839.1\|6044406_6044802_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	1.98196e-16
NZ_CP008953.1\|WP_038516823.1\|6028222_6028849_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	4.16816e-21
NZ_CP008953.1\|WP_038516821.1\|6027378_6028122_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235527	PRK05599, PRK05599, SDR family oxidoreductase.	9.61898e-86

>NZ_CP008953.1|WP_038523988.1|6036911_6037244_-|hypothetical-protein
MKKSGLLDDPETARKLEAARDLIASGKEIAPDRACELFSTLLEVQGLPAGSSRTVNLIPTRANPKAINGQTCIGGRFTSVQLVAPNLTGSDEEVSRMSSVLTRAHERNRG
>NZ_CP008953.1|WP_084098721.1|6035292_6036267_-|class-I-SAM-dependent-methyltransferase
MVLRASEWAERNAALDESHRLLTVEHENLRSRHEDLLRAKQAFEDRYRTWVPPGHFYSPFPAKEEIDRRAAALFDVDARPEAVDLREADQIALFGELADLAADLPFTAEPNERHRYFFDNPEYSWADAITLHTMLRHLRPRRVIEVGSGYSTAMTLDTIDGWLDDTELTCVEPNPQLLESLLRPGDGERVRILGKPVQDVPVETFQALEAGDVLFIDSTHVVKAGSDVNYLFFEVLPRLPDGVWIHLHDVFFPFEYPMTWLTEGRAWQEDYLLRAFLMYNDRFEICWFQQYMWIHHRRLLEERIPMMANNPGGNIWLRKVAGHQ
>NZ_CP008953.1|WP_038516828.1|6033611_6035219_+|TROVE-domain-containing-protein
MSKFNTTGTRPATSSPIVGERSPGGVTHEGGDGYARDTKSELFLLAVTNMVGENTFYETGDKRDTRFADLVRETALADPEWTARFLRWLRTEANMRTAAIVGAAEYVHARLAGDPSPVAPIANRAVVDSVLQRADEPGELLAYWTSLYGKKIPKPVKRGIADAAVRLFTEKSFLKWDSAARAFRFADVLGLAHPDPKDPVQDALFKHIVDVRFNPGREIPAELEVLGARADLMAWDKEKRRDLFSRPDTARSALRRAGMTWESLAGWLQGPMDARAWEAVIPSMGYMALLRNLRNFDEAGVSDEVAEGVAARLADPEQVANSRQFPMRFLSAYRAAPSLRWSYTLEKAIAESLANVPRLAGRTLILVDTSGSMNAGFSKDGTLMRWDAAAIFGIALGARCETADVVSFSNGYYGGTGSKAFDVPRGESLLCGLDRWKNGGYFIGAGTDTVGAIQRHLRPGHHDRVVILTDEQHSSGNVDQTVPQDTALYTWNLAGYERGHSTSGRGNRHTFGGLTDAAFTMVPLLEAGRNADWPF
>NZ_CP008953.1|WP_038516826.1|6033015_6033294_+|DUF3892-domain-containing-protein
MAIKIIAARLEGGKFHESITKLRWINPGSGETGESFVSAIVAWLEDDDGKAYVDEGIHRVAVEIIKPTFGPKFLRTRADGIWKNNLLELPRF
>NZ_CP008953.1|WP_051972614.1|6032222_6032795_-|hypothetical-protein
MCAAHKRSALAGIALAVAVLAGCAPDPAPEAAPQAAPSPSAADPAAAVAWMNGFCGVVKDFIDGNNKMPSASGETVEAIKKSTSDQLGHYAAILTKTVDGLGALPAAPVPAGDAAKQEFLAKYTSARDKTVKAKEGLDEAGKNDTAAQGRAVDGLIAAQKDTHGALDPVAAVLGAPELKTAAATAERCRP
>NZ_CP008953.1|WP_084098363.1|6030980_6032156_+|RNA-polymerase-sigma-factor-ShbA
MGHDGFDEFFHAEFPLLTGFLCKAGFALDPARDAAAEAMLNAYEDWQGITHPKAWVRRVGHRRAKEQTAVRADWASADAGREDKLTALADEASAVLTMLGSLPKRQQLAMAWTMDGYSAREIAGVLGIADEAVGATLRHARGRLAEHDPGFADRLASANCAFLDALRMGLDAEDTLARIKNRAMVRELALVAPGTPADSEPEQVTPSQWYTLDEPVAAAGKGDKRALNHLLTTVRPLVIRYCRSRIGRQERTYASADDVAQEVCVAILRALPTYRERGRPFLAFVYGIAQHKVADARRAAARNRTEPVAEVPDGISESVGPEQRALHNELSDRMGELLRILPDKQREIVVLRIVVGLSAEETAGVVGSTAGAVRVAQHRALTRLRKILAEE
>NZ_CP008953.1|WP_162182771.1|6030550_6030796_-|WhiB-family-transcriptional-regulator
MRMAGDLSEAACRGEDPELFFPVTETGPGARQAARAKAVCARCPVVSACLAYAVDNGLAHGVFGGLTGSERRHLIRVGNAA
>NZ_CP008953.1|WP_143202589.1|6028937_6030452_+|MFS-transporter
MGRKQVLEAMSGLMMGMFVAILASTVVANALPRIVSELGGSQASYTWVVTTELLAMTATVPLWGKLSDLYNKKLLIQLSLGLFVVGSLVAGFAGNIELLIGSRVAQGIGAGGLTALAQVIMAAIVSPRELGKYSGIFGAVFAVGTIAGPLIGGVMVDTSWLGWRWCFFLGVPFAIAAILLLQRTLNLPTIRRDVKVDYLGAFLIMAGVSTLLVWSSLAGHQFAWGSWWTVGLVTAGVVILALAVYVESKVAEPILPLTLFRNHTVTLTTLASFLVGVAMFGGTVFLSQYFQLSLGKSPTVAGLLSLPMIFGILVSSTVSGQLISRTGRWKSHLLLGATLMTAGLALLGTIDAKTNLVVLGAYMVLLGVGVGMLMQNLVLVSQNDVDAHDLGTATSTLSFFRSLGGSIGVSALGAVLANRVLALMSEKLGPLPGGGESGAVPNIATLPEPVANVVREAYGEATSELFLISAPIALLVIVAVAFLKHKPLKTQSGNERLAEETAAA
>NZ_CP008953.1|WP_038516823.1|6028222_6028849_+|TetR-family-transcriptional-regulator
MPEPVKGLRERKRLETHRALATTAVRLVAERGLDQVTVEDISAAAGVSPRTFFNYFASKEDAVVIAHADTAERTQRTIEKFLATPKEVSTPRAFVDALKEDFAQVDENREEWLGRMKAIQENATLHSRAVAMNHDTIAPMIEAIARRTGVDPKADLYPALVLSTLGGAVNAVLMLWYQHDGRMSALDLLDDAVELLLAGLPEPGGRAR
>NZ_CP008953.1|WP_038516821.1|6027378_6028122_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSGTVLVLGGRSEIGLAVAERLAKGGARRIVLAARRSADLGAESERLLAAGAETVDAVEFDADDLAAHGPFLEKVVAEHGPLDVVVTAFGILGDQTRAEADAGHAVAIVHTDYVAHVSVLTHVANVLREQGNGSLVVFSSVAGVRVRRANYVYGSAKAGLDGFASGLADALHGTGVRLLLVRPGFVIGRMTEGMSPAPFSSTPDQVADATVAALRKRRGTVWVPGLLRPMFAVMRVVPRAIWRRMPR
>NZ_CP008953.1|WP_038516831.1|6040640_6041696_-|acyl-CoA-desaturase
MTTTTRRLDQSQIELIGKELDSLRQRVVADLGADDADYIRRVVAVQRLSEVSGRVLLFAGWFPPAWIAGVGALALSKILDNMEIGHNVLHGQYDWMKDPTLNSRTFEWDMVCPSGQWRRSHNFMHHTYTNILDKDRDVGYGIIRITEDQKWNPYYLGNPLYAAAQAVFFEYGIMLHDLEADRIVQGRRSWAEIRPLLGPMLRKVGGQAGKDYLIFPALTGPLFPVTLAANVCANLIRNLWAFSIIFCGHFPDGAEVFPEEESENESKGQWYLRQMLGSANITGSPLFHLLSGNLSHQIEHHLFPDIPSRRYPRIAAEVRQICEKHGLPYNTGSLSKQLGSVIRKIFRLALP
>NZ_CP008953.1|WP_038516835.1|6042660_6043026_-|hypothetical-protein
MAELEPFTDSAERDRRRWSRRRTVSVACTLIRVLCGLFAAALVAWIVLVFGEANPANGVAEFVRGFAAGVSLGFDDMFTPADAKFRVLLNSGLAAIVWLGIGSLATMLIRRFALPRPGESY
>NZ_CP008953.1|WP_051972616.1|6043091_6043385_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGILAWIVLGLVAGVIARSVSRRRTKQVLVVSILVGVTGAVLGGWIAAAYLGIDAAQGFFDLTTWATAIVGSVLLLMIHHAISGGLLRPKPRWRVRR
>NZ_CP008953.1|WP_051972849.1|6043859_6044288_+|STAS-domain-containing-protein
MEVPAGGQQPPALCSPPLSVTAEQLGRTLVLIVDGDLDLHTAPAARQAIEAALSRRPRRLIVDLTHVQFLNSAGLEVLLAAHRKAAPHTDFRLVATTRTVFRPLQITGLHEQLIIHGSRSAAIATSAGTDDDSPARRPRPGH
>NZ_CP008953.1|WP_038516839.1|6044406_6044802_+|ATP-binding-protein
MPARSSVFSREVLAVAAEARVLRELVLAWLTVRGFGTDRAEDARLVANEAMENVIQHAYPAGIDGTMSLTMTADEHTVTVVVADTGRGFADDSRIGDGHGLRLMFTLSPGTVITTGPVGTTVRSAWPWAPL
>NZ_CP008953.1|WP_051972617.1|6044947_6045703_+|GAF-and-ANTAR-domain-containing-protein
MTDIPDDGNTARRPRERRISRTFIRLADTQVSAFDLADSLNGLAEQCVELLAVPAAGVLLLDPHGNLAAAAPSAQREKLMALFSTGADSGFWADILQSGTAVHCAELHSEPARWPSFTTAAGKCGFTALHALPMRLRERTIGVLILLSSEPGGADSDDLALAQALADIATIGILQHRAIETGDRLNQQLQTALTSRVVIEQAKGVLSHHGSLSMDEAFRRLRRYTRSHNRLLTDLAGSVADGTADLDAILA
>NZ_CP008953.1|WP_148311585.1|6045739_6046195_+|hypothetical-protein
MQTNSSRGNAHPEAVVFLTDECFTREEALVHWSETQPWNTFRLSMTKLLPLTPHIAVITYRVVATRDRVLEPYRARCTSVHPLREDIWKLPFREQIALPPLLWRLAVPSPRQQPVRRDPAQHVTTPAMTYAKTATDSPSVAAFVMDVAREA
>NZ_CP008953.1|WP_038516842.1|6046392_6046743_-|STAS-domain-containing-protein
MIVSGGNDDPILEPLSVTTTNAGPGNMMITVCGEIDFMTSEFLDTEFCQALDPAPRSLVVDLNGVDFCDTSGLSVLVGLTTRCGADRIAVRFLPSTTIRRLLQRTGLSGLLPIAES
>NZ_CP008953.1|WP_051972619.1|6047219_6048269_+|hypothetical-protein
MPGNDDSIRPTYERLGSSVTSSGLIAVTRLELAVRELRDLDYRFGGGHNPETLAALLAWGDQLLAGGIPSSQNAAYTVLGDLHNLAGWTAFDTGQVNAAIYHFVHAGELAREGSDVDLEANIHYRIGRLHLHHGAPTLALEAFGRGLGIVDISHSPLTASILYANLAWAHATMRAVDPALTCLGAAQDHWARTDHESLPGWASFFGENDLNAMTGVIYTELSRNIDRRFSSFAIPALEDACSGYRADMARSNVFVLIALADNMLLEGDLGGAVAQADRAMELANGVDSSRIVDRLAPLRTDVLRRQSRTPCNDLRDVSQRMTVFAHRRSARRKALKSRVAGSIGGPCED
>NZ_CP008953.1|WP_084098369.1|6048258_6051429_+|MASE1-domain-containing-protein
MRTSGHNAIGSRRTAQGAARWVALVAGVACAYFLTARLGLGLALVRGQVTPLWPPTGIALASLLIFGRSMWPGILLGSFAVNILLGPSTPAVIGIAIGATAAPLLAATVLAKSGFDPALRRLRDVNALVLLGAFGGMLVSATVGSALLLMTGAVSSSEFWLTWSVWWTGDAMGVLVVTPVFLAFRAFWRHPALTIASAKRVEAAALIVGTVVLSLGVARGVVPLPLVFFPTLIWSAWRFGLVVVAPSTLIVSIGTTAAAAAGLPPFAGLTVFTQMLVLQVINGSMALSALLLAVAAAERRQALDAATQARSELELRVRDRTAALASTVTRLERSESLLSEAQRVGHVGSWERDLTSGVIVWSDEMFRLYGLPPGTTITYTKFLDHVHPDDRAAVTASNERALRDHQPVEMDHRIIWPDGTVHWLHRRGRIVLDEHGEAVKMVGIAQDVTAGKIAEETLSRSQQRTRILLDAVTDAIVGVDLSGRIQLVNDRTQELFGHLEHDLLGRPVETLIPERFRADHERYRRDYQENPEVRTMGAGLELHGLRADGSEFPAEVALRPLKIAHNNKEQTLIVAAIRDITDRRRAEIANRELQEARDRRRQALEINDNVVQGLTASIYALDCDDHARAARTLRSTLGTARQMMRDLLTENREIKPGDLVRAAPASLPPIRQPRDSLVPTADGKRGGARLAIADDSPDVRLALRALLETLSGVEIVGEAADGAEAVRLAENTQPDAMLLDLAMPVMDGLEALPLVRSASPATKIIVMTGYGREHIAKQALNLGAAAFVEKGGSSQSFASIITSLLTGVVSSSSGFTDDDEVGDATRPIGRAGDHQAELIAIIVHELRNPITALGSITHLLMERHDQLPSATVRELLTSMTRSLRQIDRLLRTFTDLGTMGAGNLELLLEPTDIGDLVYAVLSEHSELTKHHPVHVDLAAAVSAGIDPFRIRQVISNLLSNAVKFSEPGSPITIRVATALDGVEIAVTDKGTGIPADKRDRLFGKFERLGSTVSGVGIGLHISREIARAHGGDIILADSGPEGSTFVLKLPDLLAIE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_6

7770034-7770119

Orphan

Consensus_repeat	Method
CGCCGGATCGCGTTTAGGGGGCTAAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008953_6

>merge|NZ_CP008953|6|7770034-7770119|CRISPRCasFinder
CGCCGGATCGCGTTTAGGGGGCTAAACGCAGGTCAGGCCTCCCGCCGCCGTCCGCGTCGCCGGATCGCGTTTAGCGGGCTAAACGC

>NZ_CP008953|6|5|7770034-7770119|CRISPRCasFinder
CGCCGGATCGCGTTTAGGGGGCTAAACGC	AGGTCAGGCCTCCCGCCGCCGTCCGCGT
CGCCGGATCGCGTTTAGCGGGCTAAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038519869.1\|7783319_7786820_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP008953.1\|WP_037332695.1\|7767863_7768223_+\|ESX-1-secretion-associated-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038519852.1\|7770679_7771171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_003102098.1\|7761412_7761718_-\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_CP008953.1\|WP_038519841.1\|7763447_7765547_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP008953.1\|WP_007031036.1\|7760727_7761378_-\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_CP008953.1\|WP_005166770.1\|7765610_7766081_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP008953.1\|WP_038519844.1\|7767159_7767732_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP008953.1\|WP_167551728.1\|7766820_7766967_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038519855.1\|7771485_7771719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038524503.1\|7787503_7788634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038519860.1\|7773586_7775386_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377548
NZ_CP008953.1\|WP_007031035.1\|7762129_7763323_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP008953.1\|WP_084098440.1\|7776072_7777263_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP008953.1\|WP_038519866.1\|7779316_7783228_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP008953.1\|WP_016331079.1\|7771225_7771459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038519863.1\|7777386_7779069_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375050
NZ_CP008953.1\|WP_051972692.1\|7768238_7769426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038519857.1\|7771744_7773505_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP008953.1\|WP_003102113.1\|7766080_7766455_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_003102098.1\|7761412_7761718_-\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	3.26985e-66
NZ_CP008953.1\|WP_038519841.1\|7763447_7765547_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP008953.1\|WP_007031036.1\|7760727_7761378_-\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	1.46275e-125
NZ_CP008953.1\|WP_005166770.1\|7765610_7766081_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	3.21667e-102
NZ_CP008953.1\|WP_038519844.1\|7767159_7767732_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	3.57749e-07
NZ_CP008953.1\|WP_038519869.1\|7783319_7786820_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP008953.1\|WP_084098440.1\|7776072_7777263_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.12791e-58
NZ_CP008953.1\|WP_038519860.1\|7773586_7775386_-\|hypothetical-protein	gnl\|CDD\|377548	pfam05694, SBP56, 56kDa selenium binding protein (SBP56). This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.	0.00108783
NZ_CP008953.1\|WP_007031035.1\|7762129_7763323_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP008953.1\|WP_038519866.1\|7779316_7783228_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP008953.1\|WP_038519863.1\|7777386_7779069_-\|hypothetical-protein	gnl\|CDD\|375050	pfam17210, SdrD_B, SdrD B-like domain. This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	2.36733e-07
NZ_CP008953.1\|WP_038519857.1\|7771744_7773505_-\|hypothetical-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00585106
NZ_CP008953.1\|WP_003102113.1\|7766080_7766455_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	2.87006e-84

>NZ_CP008953.1|WP_051972692.1|7768238_7769426_+|hypothetical-protein
MADQKITGEHTKIQINDYNPDTIRTDKMLTSLPGPIGSGFSTFDTVKKATADGFQASDIGTIAASGAGFVSSCMGVADIASDPIGWLVGQGLSFLMNVCQPIQDAIHMVSGDGPALSNAAGNFNNIGVYLQNYSKKFDEDAKTSLSQWTGDAANAAGEKLAKFAQGIDGIAAQAGDIAQLLQISSMVMTVIEEFIKAILTEFITWLIMIWIPALAAAVPTCGGSTATAGGLTATRAVSTTSKVQKFLNKLRQLLDKIKQFLGKLKEFFGKWKGNYKELMAHNKSTAQLAAGPGASAWGKFASKDGAMGGRLADGFGERMTSATKKAALNTVGLGKATNPDGSWKTPETGREKGEVAAGVAGKAGTYTSGGIKAGQYGSVGDDEQTPEEASDNLDF
>NZ_CP008953.1|WP_037332695.1|7767863_7768223_+|ESX-1-secretion-associated-protein
MAGGHEVVISALRTYSGKLGQDVQIPNEVGRLTQQSDVGDESWGVVGLFVKHEYTSMLTDLQDLLIEMSAGLTAASEKLGNAATAYERNEDDNVKALNEILKLLEQPAQSRTPKMGPAK
>NZ_CP008953.1|WP_038519844.1|7767159_7767732_+|YbaB/EbfC-family-nucleoid-associated-protein
MSAEFEQLVAQFDKFQSQLQNVDDRLANVGGMQDELGRIEATASSSDRSVTVVAGPGGAIMDVKFTEDALRQRPDALSAALMSTIQQAVAEAARKQATIVEEHMGDDLNLVDQVLETQADLFGTTVEEMRARMEEESPSRPAAEQQADDYSERSVLKSADEPQRPQTPPPPASSPSDGDRFLKNLFDDDH
>NZ_CP008953.1|WP_167551728.1|7766820_7766967_-|hypothetical-protein
MDAEQQESTEEPKRGSHAAPEGAPVHPLIDLSRDPHPGRADHAKPEEE
>NZ_CP008953.1|WP_003102113.1|7766080_7766455_-|30S-ribosomal-protein-S12
MPTIQQLVRKGRQDKAAKQKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGIEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKS
>NZ_CP008953.1|WP_005166770.1|7765610_7766081_-|30S-ribosomal-protein-S7
MPRKGPAPKRPLISDPVYASPLVTQLVNKVLKDGKRSLAERIVYGALEGAREKTGTDPVVTLKRALDNVKPTIEVKSRRVGGATYQVPIEVKPGRSTTLALRWLVSFSAARREKTMIERLQNELLDASNGLGASVKRREDTHKMAESNKAFAHYRW
>NZ_CP008953.1|WP_038519841.1|7763447_7765547_-|elongation-factor-G
MAREVLTDLNKVRNIGIMAHIDAGKTTTTERILFYTGVNYKIGEVHDGAATMDWMEEEQKRGITITSAATTTFWADHQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYEVPRICFVNKMDKLGADFYFTVRTIEERLGARPLVIQLPIGAESEFEGVVDLVRMKALTWRGEVQKGEDYAVEEIPAELADKAAEYREKLVEAVAETDDSLMEKFLEGEELTEAEIKAGIRKLTVAREAYPVLTGSAFKNKGVQPMLDAVIDYLPSPLDVPAVEGTLPDGETPVTRKPSVDEPFSALAFKIAAHPFFGKLTYIRVYSGKVSSGAQLINATKERKERIGKLFQMHSNKENPVDEAQAGHIYAVIGLKDTTTGDTLADPQNPVVLESMTFPAPVIRVAIEPKTKADQEKLSLAIQKLAEEDPTFQVNLDEDTGQTIIAGMGELHLEVLVNRMKSDYKVEANIGKPQVAYRETVRKTVEKLDYVHKKQTGGSGQFAKVIVKLEPLESTDGALYEFDNKVTGGRVPREYIPSVDAGAQDAMQYGVLAGYPLVGLKFTLLDGAYHEVDSSEMAFKIAGSMAMKEAAKKAGPVILEPLMAVEVTTPEDYMGDVIGDLNSRRGQIQAMEERAGTRVVKALVPLSEMFGYVGDLRSRTQGRANYSMVFDSYAEVPANVAKEIIAKATGE
>NZ_CP008953.1|WP_007031035.1|7762129_7763323_-|elongation-factor-Tu
MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPELNTASAFDQIDNAPEEKQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLAKQVGVPYIVVALNKADMVDDEEILELVELEVRELLSSQDFPGDDAPVIKVSGLKALEGDAKWGESVLELMEAVDENVPDPVRELDKPFLMPIEDVFTITGRGTVVTGRIERGRVNVNEEVEIVGIKEKSTKTTVTGVEMFRKLLDQGEAGDNVGLLVRGIKREDVERGQVVVKPGTTTPHTEFEGSVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLKEGVEMVMPGDNTDISVVLIQPVAMDEGLRFAIREGGRTVGAGQVTKIIK
>NZ_CP008953.1|WP_003102098.1|7761412_7761718_-|30S-ribosomal-protein-S10
MAGQKIRIRLKAYDHEAIDTSARKIVETVTRTGARVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ
>NZ_CP008953.1|WP_007031036.1|7760727_7761378_-|50S-ribosomal-protein-L3
MSDRQVKGILGTKLGMTQVFDENNRVVPVTVVQAGPNVVTQVRTQENDGYKAVQLAFGAVDPRRVNKPRTGHFDKASVTPRRYLAELRTTDAETYEVGQEITAEVFEAGIEVDVTGTSKGKGYAGVMKRHGFKGQGASHGAQAVHRKPGSIGGCATPGRVFKGLRMAGRMGNDRVTTQNLTVHAVRAEDGLLLIKGAVPGPKGGLLFVRSAAKGGN
>NZ_CP008953.1|WP_038519852.1|7770679_7771171_-|hypothetical-protein
MADRQLIGRIAIAGIVVAALATCVVLLKGGEEPRAETVAVVGEPTEAAPSRGPDRTITRTLSQAQPQPVSNDWQIAYELAGTGTATVVYDSNGLGLVHQELQVTLPWRKELTWKNTGTPPTVQLMGQGEGAVECRVAVGGAVVTSEKSAPGEVATCAGRLAPS
>NZ_CP008953.1|WP_016331079.1|7771225_7771459_-|hypothetical-protein
MKKTFVRAVTGAALAGLVVLGSAAPALAAQDAPNDVVVVDEPDTSDLNNIWTFAPLGVPVLGLIQSLNGVPGRLLPS
>NZ_CP008953.1|WP_038519855.1|7771485_7771719_-|hypothetical-protein
MKRIAARVLLPLALAGALSGLAGGVASADPLPGLPTGGGNPAVWLIPGLDLGGLLGPTVPVPTDVLAPIYGIITPIS
>NZ_CP008953.1|WP_038519857.1|7771744_7773505_-|hypothetical-protein
MDHHVIPASSGSAGADIALVLLRLGLLLATAFLAGAGILRPLVGELPSRLRLTIAALGGISAVLAAVSAFATDVNVIALIVHLVLALAIPVPIRRPSAGRWASLALAALVVLETSLGRTGVEFAIDTVYVAAAALWFGVTVLSIWVPAEQWRQTNFRLGPLSLTLGGLLVVAGAVQLFSSGLGFDRRIYGTLFGLTLLVIALLPIVATVLAGFFFSDKESTRAYRFGAAAVAVGFVAWSALAAIPEPPKLPTPGVALLADAAIGEQRFPVLVSPQRPGKNLVHFPASAGEDLSAGIEGGLIGKAIVRPGAEGTWAEVDLPKGRSDLIVSRGGEKTTIEVDAGEEPGLAIEDADAPECASAALGGLIADRREVLTSCPADALSSEDSGSLVKLVEFLAGRKPSALTLIEDASPRSVAAAKLVRDTAARAGLPVQAEAGPNTALLVVSGWAGGYTAMTRAAESQRLKPTHQYGLYLAPWLLNGPIVNSVASSSIPLRFDPREQVAVSFAVAAGNAFGGESPTLGGFRSWLGDQWRSINGDVQIFAAAQVNAMPMYPGEPHAVGMIADRNYAGQWIPDGTIVPVSSVLR
>NZ_CP008953.1|WP_038519860.1|7773586_7775386_-|hypothetical-protein
MAAALAAGTVTYTGSSTSAYADVQVVKDAKKAADGKEYWVQNHLVSKDVAASRSADGKRKKWLLVWAGDENIADTLVKDIKNLPGSLGGGLNKIKNALPGPDFLAVIDATQGSPTYGKVVNTATVGPLVENEPHHMQYVWHKGDTIYAGALFAAATYAFDVSALPQLKLKGVSLPTQTLGGSVPDAYWVLKDGTAYGTYMGGPVVPGPHTYANGSTVVGNGFAGSPGEVVRFDQNAQVLSESPAATPQGDNKKLCDNLPQLDKPTCANPHGIQAREDLNTLVTSDYAEPRNIILDPVKQPSPYLRRPTVRTWDISDRNKPKLKTVSYLPDGPRADPADPLHAESRAVMETTVTNLPGHKGAFAQTMQGGAVFYTPDITAKEPHWIQVFDDGAANKAIHPNNDSNGGGSNGGWIQTSPDDKYLYRAITGRSKGALGPDDPGTTGGVYVLDIQKLLAAGDKVENIKGRIDTKEKSQQGGGGDLPTVVGAAPINPGTSGGGPHWGAYDNFVLGDDGYYHETDKPQHLAVSNYFVARSGLDGDHKVNLLNLGEDGKVAVDQNFRDEFTGQVGINFNRKTWPHGSFGNAKPHSELFVVADADLK
>NZ_CP008953.1|WP_084098440.1|7776072_7777263_-|serine-hydrolase
MRDGWRAIPGPPVERMVDMESLVTEENSATKNLRSALDDVHRAGVPGVFAEVRADGRIWRGAAGVADLETGRPVGTGMRQRVGSITKTFVSAAVLRQVEAGRLDLDAPIGDFLPLLVPGERGRAITIRMLLNHTSGLAEYLPYAFPSLQKLAPESLDDNRFQEFRPAELIAIGVGAPATGEPGSTPGIYSNTNYLLLGELLEHLTGAPMEEHISRDIIEPAGLANTGFPAGPRIEEPHSRMYEALFGAIDPPRDYSVYNMSWVMAGAGLVSTVDDLNRFYRKLLDGEIVSPSSLAEMQRLVPVIAQDGRLIDYGLGLYKTEIPGHGVFWGHDGTVWGALTMAWAGPDGGRQFSAAMNLVRWRKPDPEGTSHPIDDALATLKHQALCGPASDLRFAP
>NZ_CP008953.1|WP_038519863.1|7777386_7779069_-|hypothetical-protein
MTGVFAAPAGADPAPSSPASSAPATSEAPASSSAPPSSSAAESAPSVAPKPQAERAQVEASVVFEKTSYRTDEDVRFTFKIKNVGATRATGLWVSQSFSEPTDLVVPLESGWGPFTVGKGGKNLEPGDSFELPVTGKIRDIAKDTTVVQGIIFDQTGFGVGKFSAEAKVTKETSRVAGVVYGDKNGNGGLDDGEKLGGITVTLQYNNGPTKYTATSDADGRIEFGDLPAAEYHLGGEEIKGWHFPSESVRVGQNTKDLLIRGVPPLNGALKASMAFTQDSYKPGELAHVSVTLTNSGSIPLTGIVSGCDRYGADWALKGGESWGDLGNRGKGVTIAPGETRKIDVSEKVPDAALNRGFVSVSCDFGYREVDIDGHAQARDQAAVPGGFATVVGDVVHVVGQGEPKGVGGVKVVLVSDGKCPVIGERTTDAEGRFEFRKVVPGPEYKLYFLTPQGWRIRGENPMQIQVTGPEDKPFPIRTLAETGEAPAPTVPTQPADCGKTETPAPTTTPAGQGSGGGQGGSGLASTGADVIWLGALALAALGLGAVLVFGARRRRQPAE
>NZ_CP008953.1|WP_038519866.1|7779316_7783228_-|DNA-directed-RNA-polymerase-subunit-beta'
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEADLAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDVRQLIADELLYRELIDRYGEYFTGGMGAEAIQKLATEFDVAAEAESLRDTIRNGKGQKKLRALKRLKVVAAFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSRPQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNENADGAGNAYSSPAEAIMAYDRKALSLHAPIKIRVTDRQPAKADEARLAENGWEPGKAWLAETTLGRVLFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTVAISDVLVPAGKKAILDEYEGKADQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMETALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTTRGINMPIGEDIGDGKVLRDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLISSGISKVKVRSVLTCESAVGICATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTPNGPLGDGDRVAVGQQLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATDFLPGELPERTKFEAKNRASVAEGGEPASGRPVLMGITKASLTTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPTEEARVAAYAIPSYDDGYYTPDVFGSTPGAAVPLDDYDFGRDFR
>NZ_CP008953.1|WP_038519869.1|7783319_7786820_-|DNA-directed-RNA-polymerase-subunit-beta
MAVSPANQATAATTSAVSRSESTGIPGAPKRVSFAKIREPLSTPNLLDVQIRSFEWFTGDEAWFERRVEEGEENPVGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAPLFVTAEFVNNNTGEIKSQTVFMGDFPVMTDKGTFVINGTERVVVSQLVRSPGVYFDTSVDKTTDKDVFNVRVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEAIRERFSFSETLLATLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKPKRYDLAKVGRYKLNKKLGLTTPYDTGTLTEEDIVSTIEYLVRLHAGEDKATVGDQVIPVETDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLCSYARVNPFGFIETPYRKVVEGRVTDQVDYLTADEEDRFVKAQANAPISDDGTFVEDRVLVRKKGGEVELIDPLDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLLRNSAPLVGTGVELRAAVDAGDVLVAEQAGVVEELSADLITIMHDDGTRKSYGLYKFRRSNHGTCFNHRPIVNEGDRVEQGQVIADGPSTENGEMALGKNLLVAVMPWEGHNYEDAIILSERLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVFSREDDDELPPGVNELVRVYVAQKRKIQPGDKLAGRHGNKGVIGKILPAEDMPFMEDGTPVDIILNTHGVPRRMNIGQVLELHLGWLASQGWKIEGQPDWAKNLNEELYDVDPGTNTATPVFDGAKEEELTGLLGATKPNRDGERMVKQNGKATLLDGRSGEPYPYPVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDEDLERAAANLGINLSRNESPSVDDVVH
>NZ_CP008953.1|WP_038524503.1|7787503_7788634_+|hypothetical-protein
MPPVFLRPEAELREAAERSPLLDEIRGYVAGSDAVDPLIPRWAEVAGLVRDVDGKHVPVEENATLVDDPLRLWERLYSTIGEAESLPFGLVASISLTLYRSGPVAVPVELLFEALALGQAPDESTPYATSVALDLLERLGALEKGTADPAGLALIAEIAGKPDPSPFVLSLTPIAVWAINRELREAGMSAPVIGEAAEKSLGELSPRLAESGPGIIDAELKAWVRHRSPSGAAAEASEFLRTARLPVERLFALIVLGETGEFGLETAAGVRAEGGLVGAAAAMWLSERGAVDRETITRDEVVLGMADHYAAMHALGAFVHQLADMDDRFDIVDLLTSSGHPDRLQLLNVVGTDHPDPKMAKKARTASYKLRSSGGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008953_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008953_7

7960213-7960448

Orphan

Consensus_repeat	Method
TGCTCCTGCGGCGGTGTCGGCCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP008953_7

>merge|NZ_CP008953|7|7960213-7960448|CRISPRCasFinder
TGCTCCTGCGGCGGTGTCGGCCGCACGAACTGACCCGACTGCTGCGGCGGGCGCTGCTGGTAACCGCTTTGCTCCTGCGGCGGCGTCGGCCGGACGAATTGCCCGGATTGCTGCGGCGGACGCTGCTGATAGCCGCTCTGCTCCTGCGGCGGGCGCACCGGCGGCGTCTGCCGGGTCGGGGCGTTCGGCGGCACCGGCAGCGGCGCGGAATCCTGCTGCGGCTGCGGAAGCGGACG

>NZ_CP008953|7|6|7960213-7960448|CRISPRCasFinder
TGCTCCTGCGGCGGTGTCGGCCG	CACGAACTGACCCGACTGCTGCGGCGGGCGCTGCTGGTAACCGCTT
TGCTCCTGCGGCGGCGTCGGCCG	GACGAATTGCCCGGATTGCTGCGGCGGACGCTGCTGATAGCCGCTC
TGCTCCTGCGGCGGGCGCACCGG	CGGCGTCTGCCGGGTCGGGGCGTTCGGCGGCACCGGCAGCGGCGCGGAATCC
TGCTGCGGCTGCGGAAGCGGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008953.1\|WP_038520177.1\|7970013_7970826_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP008953.1\|WP_038520151.1\|7956538_7957354_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP008953.1\|WP_016330916.1\|7957378_7958209_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298
NZ_CP008953.1\|WP_038520169.1\|7965779_7966529_-\|phosphoglyceromutase	unknown	unknown	gnl\|CDD\|184519
NZ_CP008953.1\|WP_038520146.1\|7953458_7954550_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153249
NZ_CP008953.1\|WP_038520149.1\|7954546_7955596_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187551
NZ_CP008953.1\|WP_037333010.1\|7960817_7961807_-\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP008953.1\|WP_038520139.1\|7950216_7950924_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|131997
NZ_CP008953.1\|WP_016330921.1\|7952212_7953115_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|273654
NZ_CP008953.1\|WP_038520162.1\|7962643_7963876_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NZ_CP008953.1\|WP_016330918.1\|7956129_7956345_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP008953.1\|WP_038520174.1\|7968175_7968691_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|371210
NZ_CP008953.1\|WP_038520154.1\|7958350_7959148_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP008953.1\|WP_005167072.1\|7961957_7962647_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP008953.1\|WP_038520142.1\|7951033_7952116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237874
NZ_CP008953.1\|WP_038520163.1\|7964148_7964796_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038520166.1\|7964792_7965710_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_038520171.1\|7967192_7968107_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP008953.1\|WP_007030867.1\|7955882_7955984_-\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NZ_CP008953.1\|WP_083649906.1\|7968687_7969992_-\|D-inositol-3-phosphate-glycosyltransferase	unknown	unknown	gnl\|CDD\|132490

Protein	Function_ID	Function_description	E-value
NZ_CP008953.1\|WP_038520177.1\|7970013_7970826_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.42184e-23
NZ_CP008953.1\|WP_038520151.1\|7956538_7957354_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	5.66267e-107
NZ_CP008953.1\|WP_016330916.1\|7957378_7958209_-\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	6.06362e-49
NZ_CP008953.1\|WP_038520146.1\|7953458_7954550_-\|acyltransferase-family-protein	gnl\|CDD\|153249	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.	1.13827e-42
NZ_CP008953.1\|WP_038520149.1\|7954546_7955596_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187551	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs. Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.45582e-73
NZ_CP008953.1\|WP_037333010.1\|7960817_7961807_-\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	3.88089e-82
NZ_CP008953.1\|WP_038520139.1\|7950216_7950924_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|131997	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.	5.30436e-57
NZ_CP008953.1\|WP_016330921.1\|7952212_7953115_+\|HAD-IB-family-hydrolase	gnl\|CDD\|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI\|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI\|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	1.65714e-56
NZ_CP008953.1\|WP_038520169.1\|7965779_7966529_-\|phosphoglyceromutase	gnl\|CDD\|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	0
NZ_CP008953.1\|WP_016330918.1\|7956129_7956345_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	2.55734e-17
NZ_CP008953.1\|WP_038520174.1\|7968175_7968691_-\|YbjN-domain-containing-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.61541e-20
NZ_CP008953.1\|WP_038520154.1\|7958350_7959148_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.8778e-25
NZ_CP008953.1\|WP_005167072.1\|7961957_7962647_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.03495e-93
NZ_CP008953.1\|WP_038520142.1\|7951033_7952116_+\|hypothetical-protein	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	1.08298e-07
NZ_CP008953.1\|WP_038520171.1\|7967192_7968107_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.22816e-68
NZ_CP008953.1\|WP_038520162.1\|7962643_7963876_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	2.98185e-74
NZ_CP008953.1\|WP_083649906.1\|7968687_7969992_-\|D-inositol-3-phosphate-glycosyltransferase	gnl\|CDD\|132490	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.	0

>NZ_CP008953.1|WP_038520154.1|7958350_7959148_-|sugar-phosphate-isomerase/epimerase
MVQQVPVGLSTASVWPLRAGVAFELAADLGYDGVEVMVWADPVSQDVSALRRWSRRTGVPVLSIHSPSLLITQRVWSPDPVVRLRMSVEAAQELGARTVVVHPPFRWQRRYGDAFGDLVDELEEASGIEIAVENMFKVRPPGGSRMSRVSAFRPSIDPTDVGFRHYTLDLSHTAAAGMDALALADRMGPGLAHVHLADGTGLPKDEHLVPGRGIEPCAELLEKLVSSDFSGQVVLEINTRRSPSAAQRSRDLAESLLFARLHLGQ
>NZ_CP008953.1|WP_016330916.1|7957378_7958209_-|thioesterase-family-protein
MSATDETSTSFDEACATRSLGDGTFTAVLRTEWSIGGHPHGGFLMALMARAALSFLHERGEPPSEPLAISAEFLHPPAVGPVLLRMDVRKVGRRASVVGVLLEQRGRSCVEARVTTGRLPMRRPEWTDVPAMAAEPPPGAVPVTGETSEGLFNLAKGCEVRLDPASVGYLHGRIGDPPRMRLWVRPRHGLADPYFALLASDVNPPVVYNLGRVGWAPTVQLTALLRTRPAPGWLRVIVQSQSVHEAWFDSDALVVDSQGRLVCQARQLALAPAPGA
>NZ_CP008953.1|WP_038520151.1|7956538_7957354_-|pyrroline-5-carboxylate-reductase
MSVIAVLGAGKIGEALLSGLLHGGHSPDDLLFTERYPARAAELTERYGVHGVGVADAARRADVLVVAVKPQDIEPVLDELAPLLGEESLVVSLCAGLPTALYERRLADGVPVVRVMPNTPMLVGEAMSAVSAGAHATAEHIAVVKDLLSHVGQVVEVPESQQDAVTALSGSGPAYFFYLVEAMIDAGILLGLPRALAGQLIIQSAVGAAKMLAESDEHPVLLREAVTSPAGTTINAIRELEKHGVRAALLAAIEAAKDRSTELGRAHEPRV
>NZ_CP008953.1|WP_016330918.1|7956129_7956345_-|helix-turn-helix-domain-containing-protein
MPPNKKDDLPSVGQVQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGKSFRVPEKAVHEYLQGAYFDVG
>NZ_CP008953.1|WP_007030867.1|7955882_7955984_-|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKAGK
>NZ_CP008953.1|WP_038520149.1|7954546_7955596_-|NAD-dependent-epimerase/dehydratase-family-protein
MPSNIVLVTGVGGDLGGKLLARLGNNPGFERVIGVDTTPPQKSVLQRMGHAEYVRADIRNPLIAKVISTAKVDTVVHASCTAHPAGPARRTAIKEVNVIGTMRLLAACQRSPLVRKLVVKSTAAVYGAGARSQAVFTEDSELIPTSASGYAKDAVEMEGYVRGLMRRRPDITTTLLRFANIISPEIDTVLSRYFALPVVPTVFGYDARIQLLHASDALAVFEQATLNDKPGVFNVGSEGVLTLSQAIRRAGRVELPMPSGVVPSVGKVLRGARVVDFSADQVRLLNFGRVVDITKLKKDFGYTPRWTTREAFDDYITGRGLRPVVDGGKLAGFAGKVLVAAATGQAAHR
>NZ_CP008953.1|WP_038520146.1|7953458_7954550_-|acyltransferase-family-protein
MSRPHENSHEGEAENVSGAEAQVIPLHGPGREKPDAAAQAERDLRESEEAQDHLDSERRADAPVVEFPGAARVSPARTRPTDADLLPDSLRTALAFVRDRLTGDYTVDEFGFDAELTETLLLPPLRALYEKWFRVDTFGVENLPVDGGALLVSNHSGTVPLDALMTAVAVHDHVPGGRHLRGLGADLVFQLPLIGSFARKSGQTLACNADAERLLRKGELVGVWPEGFKGIGKPFSSRYKLQRFGRGGFVSAALRTGAPIIPVSVVGAEEIYPKIGDIKLLARVLGLPYFPVTPLFPLLGPLGAIPLPTKWSIEFGEPIRTDTYDADAVDDPMLVFTLTDQVRESIQQSLYKRLSQRKSVFKG
>NZ_CP008953.1|WP_016330921.1|7952212_7953115_+|HAD-IB-family-hydrolase
MSVWRGRDKSQELERLAELAGEASAEAAMATASAEALEPPAPPAPPDLTAAAFFDVDNTMMMGASIFYFARGLAARKFFTSADLAGFVWQQVKFRLGGRENKEDIKTHRERALSFVAGRTVQELTDISEEIYDELMADKIWSGTRALAQMHLDAGQRVWLVTATPIELAAIISRRLGLTGALGTVAETKDGVYTGRLVGDLLHGRAKAHAVRALASREGLNLKRCTAYSDSQNDVPMLSVVGTAVAVNPDGGLRDVARARGWEIRDFRTGRKAAKIGVPSVLGVGAVAGAVAAGMAYRKR
>NZ_CP008953.1|WP_038520142.1|7951033_7952116_+|hypothetical-protein
MGVPGWFARERADGDRFADLVDGTESPDDDEFAHELALVGGLRELGAGGAPDAETRQRIRDEIAGRLAEAEAAPKRRGHAIANLAAAAVALILALGGITLLLSKDALPGDPLYGIKRAGESASLGLTFDEQDKAKKHLEFAANRVGELDELTRQGAPTAAYFTGLADFETDLRAGVSQLTALVTDQGGQARLAELRSWARQQSDRLGLQIDYAPAEARDKFDSARVLLERVQARTTDLGSRLVCYTITTGSSDELGAVPAAGDCVRNPDSPDAVLPPVTSSPPSSAPSATPTPTSVPPSSGVDTAAPTGPLAPPSGGTPPPVVATPGPTTRTLPPTTTTPPPPLVSIPPLIPGLPPIIIG
>NZ_CP008953.1|WP_038520139.1|7950216_7950924_+|sigma-70-family-RNA-polymerase-sigma-factor
MTLPAPNPVSMLAGHILRRSGFPAAPSPRPKVSDTAESDAAAEAAKAEAWELVSAAQDGDTSAFGRLYDRYVDVVYRYVLFRLGDRDLAEDVTSETFLRALRRITSVSYQGRDVGAWFVTIARNIILDHVKSSRFRLEVVTDEVAEPNGAPIGNVGVQAVAGPEQQAISRATRAELLRCVAELGEDQRECIVLRFMQGLSVAETAAIMKRNEGAIKALQHRAVRRLAQLLPTGLR
>NZ_CP008953.1|WP_037333010.1|7960817_7961807_-|Ppx/GppA-family-phosphatase
MRLGVLDVGSNTVHLLVVDAHRGAHPTPMHSEKAVLRLAEQITRNGDLSRAGADSLVRAVESAKAAAARLGCEEVMAFATSAVREAKNAPKVLAKVQEQTGVELKVLSGIDESRLTFLAVRRWFGWSAGKLLVLDIGGGSLEIAMGRDEEPDLAESLPLGAGRTTRTRFQHDPPSRSELIATSVWLEEQLAPLAKKVAKLGEPDRVVATSKTFRSLARLTGAAPSASGPHVRRTLTDTALRQLIAFISRMTAQDLAQLEGVSASRSHQLVAGALVAQATMRALSLEELEICPWALREGVILRRLDHSNGADETVGGSARLDLVDGERAR
>NZ_CP008953.1|WP_005167072.1|7961957_7962647_-|response-regulator-transcription-factor
MTRVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTDVCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEPGSEGDLAPLVLTAGPVRMDVERHVVTVDGQEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFET
>NZ_CP008953.1|WP_038520162.1|7962643_7963876_-|two-component-sensor-histidine-kinase
MTTPVALALAVGGLIVGVVFGFLIARGRARREERRPTGPTVAELLERLVRSSNNGVVVLNRFGDMVLHNPRAYELGLVKVNQADPRARKAAEQVVETDEPMEIDLSPLEARGRQPEAVLGEVRPLGDGFTVVEAVDHSEAIRLEAVRRDFVANVSHELKTPVGAIALLTEAVLDAAEDTEEVRRFGGKILRESTRLGQLVTELIALSRLQGAERLPDLNVVEVDAVVREALGRTTLSAESAEITITTDAASGLLIEGDRTLMVTALSNLLENAVAYSQPGSPVSISRRLVDGKVEIAVTDRGIGIAEDEQQRVFERFYRADKARSRATGGTGLGLAIVKHVAANHGGSVGLWSRPGTGSTFTLRIPAHIPAEPAAPVKQAPPASRPEKTPERTPRLVATGQESPDHGGNL
>NZ_CP008953.1|WP_038520163.1|7964148_7964796_+|hypothetical-protein
MELVSDISLIRGEEELFDRTAHLFVAATDIACAADDLYTWALSRPSLTQQGERLVHDKRIRKLYRPGVLLNEQTAQHLHHLSGLGAQIRIGTEEINETILLDERVAIMAGDEGKAVRSYSVISRPELVQGILSLFETAWLASTTLETFDARFADIRMEAPQILEFLTTGCKDEKAAKSLGMGVRTYQRRVSELLVALGVTSRLQVDARARELGLL
>NZ_CP008953.1|WP_038520166.1|7964792_7965710_+|hypothetical-protein
MKRWAGLAVLLALAGCTTTVSGTARPEPESPPANLALVDPAKTASVLTAVKTAAEAVFSYDSTAVPAYEKALADNVTPGARDELAKLFAEVRKSAEPIKLVTKVIVSAAVEQTPDKARVLTVLDQSSTRAGATSKGIASVLLATVREGDRWRIGEVKVNPADSPPAAEKPGAGDRVFARVRDSARDGALRAAEALLNVNPADPEGTYARYESVSTGQLLTQFQQDKAARLNQIRSGGTKASPAPNPAAAVMEVVDDKASVLLFATSDVTDAAGQASKRYLPIVLRLQRLPEGWKAAGIESVQALP
>NZ_CP008953.1|WP_038520169.1|7965779_7966529_-|phosphoglyceromutase
MAELGTLVLLRHGQSTWNAENLFTGWVDVPLSEQGEQEARKGGRLLAESGLLPDVVHTSLMRRAISTANLALDAADRHWIPVKRDWRLNERHYGALQGKNKKQTLDEFGEEQFMLWRRSYDTPPPPIDPADEFSQVGDARYADLGDAAPLTECLKDVVARLLPYWESEIVPDLRAGKTVLVAAHGNSLRALVKHLDGISDDAIAGLNIPTGIPLRYDLTEDLKPVTAGGTYLDPEAAKEAAAAVANQGR
>NZ_CP008953.1|WP_038520171.1|7967192_7968107_-|DUF4349-domain-containing-protein
MHKRVRWVAAAGIVLALAGCSANDSGGESAAMPMSADTKQAAPKEGVPNKEATDSKAGSDKAPAPAGQPGITDRKLVRTASLELTAPNVADVISQVRVITQGAAGYTGQESTQEKRASVNVIVPSERLDGVLDQLGKLGKQVRREVTATDVTEQMVDVESRLATQRASVERIRALLARATSVSEIASVESELTSREAELESLQKRRESLAGSVAMSTISLQVKAETVAASEESRSGFLGGLAGGWDAFLTFGGGLLTAIGAMAPFLLVFGVPVAALVWWLRKRRRPAEPAMATASDLPSAPPLD
>NZ_CP008953.1|WP_038520174.1|7968175_7968691_-|YbjN-domain-containing-protein
MTLDETLRSSLDNAGLEYERRGEGRYFVTLPGTKKLQTNCWLVAGDHAFAVEAFVCRRPDESHEDVYRFLLRRNAKLYGVHYTVDAIGDIYLVGRFGLDTVTEAELDKILGQVLEAADGDFNTLLELGFAESIKREWDWRVSRGESLANLQAFKHLVEPSNGHEPGALTDS
>NZ_CP008953.1|WP_083649906.1|7968687_7969992_-|D-inositol-3-phosphate-glycosyltransferase
MTIPLHGFDAAPRRVAVLSLHTSPLEQPGTGDAGGMNVYVSQTATEMARRGVEVEVFTRATSSDQPPVAELAPGVLVRHIPAGPFEPLGRDELPAQLCAFTAGVLRAEAFHEPGYYDLIHSHYWLSGQAGWLARDRWGVPLVHTAHTLAKVKNAALAEGDTPEPRTRVIGEEQVVEEADCLVANTRVEARELIELYDADPHAVHAIPPGVDLDRFTPGSQAAARRALGLPTDAIVLAFAGRIQPLKAPDVLLLAAAEMLRERPELASRLVVLIVGGPSGTGLEQPQALRELAVSLGIEAQTRFMPPQPGRSLVNVYRAADLVAVPSYNESFGLVALEAQACGTPVIAAEVGGLPVAVPHGVSGLLVPSHDAKDWAGALANVALRPGWRAELSANAVVHARRFSWRRTTDRLLDTYAQATGAFRRALEQRAEVAV
>NZ_CP008953.1|WP_038520177.1|7970013_7970826_-|alpha/beta-hydrolase
MKTEVVGYGGTRIGLWVEGAENTRPIVFVHGWAQSSRAWAPQLADPALSERFRLVAMDLRGHGDSEVPSAGYDDPRVWAEDLASVLDFAGEDAIVVGWSYGGLVITDYLRVHGSSRLAGVVLVGAITEIGKNRPGGKVGPAMRDAIPAVLSDDPAVAIPALVQFSARMTAAPVSGTLTQSLLGACLSTPPAVRSALFRRDVGSEDVLRDLDKPALIVHGLADAVIDPTSAEYAAGKIQGAVVRWLPEVGHLPFAEAADEFGELLRGFADQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NZ_CP029174	Methylobacterium sp. DM1 plasmid pLVM1, complete sequence	109239-109266	5	0.821
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1439717-1439744	5	0.821
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	1255840-1255867	5	0.821
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	283713-283744	6	0.812
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NC_016601	Pseudonocardia dioxanivorans CB1190 plasmid pPSED02, complete sequence	56703-56730	6	0.786
NZ_CP008953_5	5.1\|6038521\|30\|NZ_CP008953\|PILER-CR,CRT	6038521-6038550	30	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	733378-733407	7	0.767
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	198332-198359	7	0.75
NZ_CP008953_6	6.1\|7770063\|28\|NZ_CP008953\|CRISPRCasFinder	7770063-7770090	28	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	492522-492549	7	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	265012-265043	8	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	774222-774253	8	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2061138-2061169	8	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	663192-663223	8	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP038638	Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence	29248-29279	8	0.75
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_CP023065	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence	51815-51846	8	0.75
NZ_CP008953_5	5.4\|6038521\|31\|NZ_CP008953\|CRISPRCasFinder	6038521-6038551	31	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	733378-733408	8	0.742
NZ_CP008953_5	5.5\|6038581\|33\|NZ_CP008953\|CRISPRCasFinder	6038581-6038613	33	NZ_CP038638	Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence	29248-29280	8	0.758
NZ_CP008953_5	5.2\|6038581\|32\|NZ_CP008953\|PILER-CR,CRT	6038581-6038612	32	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	168012-168043	10	0.688

1. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NZ_CP029174 (Methylobacterium sp. DM1 plasmid pLVM1, complete sequence) position: , mismatch: 5, identity: 0.821

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
cgcccaggcctcccgccgcggtccgctt	Protospacer
 * .*************** ****** *

2. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 5, identity: 0.821

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
ggatcaggcctgccgccgccgtcagcga	Protospacer
.*.******** *********** ***

3. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 5, identity: 0.821

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
ggatcaggcctgccgccgccgtcagcga	Protospacer
.*.******** *********** ***

4. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cttcgatgcgcttgcgctgtcgat--ttccgggc	CRISPR spacer
cgtcgatgcgcttgacctgtcgattgttcctg--	Protospacer
* ************  ********  **** *

5. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NC_016601 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED02, complete sequence) position: , mismatch: 6, identity: 0.786

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
gcgtcaggccgcccaccgccgtccgcca	Protospacer
. ******** ***.***********

6. spacer 5.1|6038521|30|NZ_CP008953|PILER-CR,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.767

tcccaggttccgccagggtctgcttgtacg	CRISPR spacer
ggccagcttccgccagggactgctttggcg	Protospacer
  **** *********** ******  .**

7. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.75

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
ggaacaggccgcccgccgccgtccggtc	Protospacer
.*. ****** **************  .

8. spacer 6.1|7770063|28|NZ_CP008953|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.75

aggtcaggcctcccgccgccgtccgcgt	CRISPR spacer
catccagcccgcccgccgccgtccgcgc	Protospacer
 . .*** ** ****************.

9. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgat---ttccgggc	CRISPR spacer
gttcgatgcggttgcggtgtcgatacacttcg---	Protospacer
 ********* ***** *******   .*.**

10. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgat---ttccgggc	CRISPR spacer
gttcgatgcggttgcggtgtcgatacacttcg---	Protospacer
 ********* ***** *******   .*.**

11. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgat---ttccgggc	CRISPR spacer
gttcgatgcggttgcggtgtcgatacacttcg---	Protospacer
 ********* ***** *******   .*.**

12. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgat---ttccgggc	CRISPR spacer
gttcgatgcggttgcggtgtcgatacacttcg---	Protospacer
 ********* ***** *******   .*.**

13. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP038638 (Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgatttccgggc	CRISPR spacer
cagcaagcagctcgcgctgtcgatatccgggc	Protospacer
*  *.*   ***.*********** *******

14. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 8, identity: 0.75

cttcgatgcgcttgcgctgtcgat---ttccgggc	CRISPR spacer
gttcgatgcggttgcggtgtcgatacacttcg---	Protospacer
 ********* ***** *******   .*.**

15. spacer 5.4|6038521|31|NZ_CP008953|CRISPRCasFinder matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.742

tcccaggttccgccagggtctgcttgtacgg	CRISPR spacer
ggccagcttccgccagggactgctttggcga	Protospacer
  **** *********** ******  .**.

16. spacer 5.5|6038581|33|NZ_CP008953|CRISPRCasFinder matches to NZ_CP038638 (Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

cttcgatgcgcttgcgctgtcgatttccgggcg	CRISPR spacer
cagcaagcagctcgcgctgtcgatatccgggcg	Protospacer
*  *.*   ***.*********** ********

17. spacer 5.2|6038581|32|NZ_CP008953|PILER-CR,CRT matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 10, identity: 0.688

cttcgatgcgcttgcgctgtcgatttccgggc	CRISPR spacer
tgccgatgcgcacgcgctgtcgattttcattg	Protospacer
. .******** .*************.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4912615 : 4942048

Neodiprion_sertifer_nucleopolyhedrovirus(50.0%)

plate,protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038509990.1\|4912615_4913689_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038515037.1\|4914487_4915465_+	hypothetical protein	NA	NA	NA	NA
WP_084098299.1\|4915517_4916297_-\|protease	serine protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	2.5e-17	29.1
WP_038515039.1\|4916546_4917347_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_038515041.1\|4917374_4918565_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_038515043.1\|4918605_4919007_-	hypothetical protein	NA	NA	NA	NA
WP_038515044.1\|4919043_4919556_-	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_038515046.1\|4919918_4920293_+	hypothetical protein	NA	NA	NA	NA
WP_038515047.1\|4920289_4921525_+	ECF subfamily RNA polymerase sigma-24 subunit	NA	NA	NA	NA
WP_038515049.1\|4922051_4922819_-	twin-arginine translocation pathway signal protein	NA	NA	NA	NA
WP_038515051.1\|4923182_4923860_+	sensor histidine kinase	NA	NA	NA	NA
WP_038523672.1\|4923865_4924516_+	response regulator transcription factor	NA	NA	NA	NA
WP_038515053.1\|4924615_4925239_+	response regulator transcription factor	NA	NA	NA	NA
WP_038515054.1\|4925246_4926566_-	hypothetical protein	NA	NA	NA	NA
WP_038523674.1\|4927171_4931170_-	PD40 domain-containing protein	NA	NA	NA	NA
WP_038515056.1\|4931187_4932162_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_038515057.1\|4932165_4932705_-\|tail	phage tail protein	NA	NA	NA	NA
WP_038515059.1\|4932701_4934663_-\|plate	putative baseplate assembly protein	A0A1J0GW37	Streptomyces_phage	8.1e-12	27.1
WP_037344464.1\|4934662_4935073_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_037344462.1\|4935074_4935356_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_038515061.1\|4935538_4937359_-	VgrG-related protein	NA	NA	NA	NA
WP_038515063.1\|4937351_4938116_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_016333594.1\|4938118_4938565_-\|tail	phage tail protein	NA	NA	NA	NA
WP_038515065.1\|4938576_4940997_-	hypothetical protein	NA	NA	NA	NA
WP_016333592.1\|4941004_4941163_-	hypothetical protein	NA	NA	NA	NA
WP_038515067.1\|4941159_4941600_-	hypothetical protein	NA	NA	NA	NA
WP_037344451.1\|4941604_4942048_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

5955924 : 5964366

Mycobacterium_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038516629.1\|5955924_5956839_-	AAA family ATPase	A0A222YX12	Streptomyces_phage	1.9e-40	38.6
WP_051972602.1\|5957038_5958115_-	hypothetical protein	A0A2L1IVY6	Streptomyces_phage	2.1e-62	41.6
WP_051972603.1\|5958196_5958751_-	hypothetical protein	NA	NA	NA	NA
WP_038516632.1\|5958747_5959068_-	hypothetical protein	NA	NA	NA	NA
WP_063777817.1\|5959079_5960969_-	DNA polymerase	A0A222YXX9	Mycobacterium_phage	1.3e-224	64.2
WP_038516635.1\|5960984_5961230_-	helix-turn-helix domain-containing protein	A0A142K6D0	Mycobacterium_phage	2.3e-09	47.6
WP_158509806.1\|5961226_5961391_-	hypothetical protein	NA	NA	NA	NA
WP_038516638.1\|5961390_5961594_-	hypothetical protein	NA	NA	NA	NA
WP_051972604.1\|5961659_5962205_-	hypothetical protein	A0A222YXZ3	Mycobacterium_phage	1.1e-14	51.7
WP_038516641.1\|5962369_5963002_-	hypothetical protein	A0A0N9BDR2	Mycobacterium_phage	1.8e-21	35.8
WP_038516644.1\|5963036_5963807_-	metallophosphoesterase	A0A222YZN7	Mycobacterium_phage	2.6e-99	67.7
WP_038516646.1\|5963844_5964366_-	endonuclease VII domain-containing protein	A0A2H4PFM8	Mycobacterium_phage	1.2e-34	54.4

DBSCAN-SWA_3

5977135 : 5990942

Mycobacterium_phage(66.67%)

tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038516710.1\|5977135_5977462_+	HNH endonuclease	A0A1B3B0R4	Gordonia_phage	1.3e-28	62.2
WP_038516714.1\|5977733_5978117_+	hypothetical protein	A0A2P1CGA5	Mycobacterium_phage	1.4e-21	46.8
WP_038516717.1\|5978116_5978371_+	hypothetical protein	NA	NA	NA	NA
WP_038516720.1\|5978954_5979167_+	hypothetical protein	NA	NA	NA	NA
WP_038516723.1\|5979180_5980869_+	hypothetical protein	A0A1S5VY55	Rhodococcus_phage	4.2e-227	69.0
WP_051972607.1\|5980868_5982293_+\|portal	phage portal protein	A0A1D8EUL2	Mycobacterium_phage	2.1e-126	52.8
WP_038516725.1\|5982289_5983102_+	hypothetical protein	A0A2D1G8D1	Mycobacterium_phage	2.6e-65	49.3
WP_038516727.1\|5983162_5983693_+	hypothetical protein	A0A2P1CFC3	Mycobacterium_phage	2.1e-07	37.8
WP_038516730.1\|5983760_5984711_+\|capsid	phage major capsid protein	V5R986	Arthrobacter_phage	2.0e-93	61.8
WP_038516734.1\|5984953_5985361_+	hypothetical protein	H9NCJ4	Mycobacterium_phage	5.0e-33	55.3
WP_038516737.1\|5985357_5985714_+	hypothetical protein	A0A1D8ESX7	Mycobacterium_phage	4.0e-26	54.6
WP_038516740.1\|5985713_5986022_+	DUF5403 family protein	G9FHK2	Rhodococcus_virus	6.5e-09	40.4
WP_038516743.1\|5986047_5986440_+	hypothetical protein	A0A088FRQ0	Mycobacterium_phage	2.2e-33	56.1
WP_038516747.1\|5986452_5987037_+	hypothetical protein	A0A088FWJ5	Mycobacterium_phage	5.7e-46	50.5
WP_038516749.1\|5987156_5987528_+\|tail	phage tail assembly protein	A0A222ZJ68	Rhodococcus_phage	7.3e-23	50.4
WP_051972609.1\|5987479_5987950_+	hypothetical protein	A0A1J0MIX5	Mycobacterium_phage	5.6e-20	46.6
WP_051972610.1\|5987927_5990942_+	hypothetical protein	A0A222ZNE4	Mycobacterium_phage	2.7e-51	32.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008954

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP008953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection