CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007287	Bifidobacterium coryneforme strain LMG18911 chromosome, complete genome	0 crisprs	WYL,cas3,DEDDh,csa3	0	0	1	0

1. NZ_CP007287

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1459890 : 1466994	6	Mycobacterium_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP007287|1459890:1466994|DBSCAN-SWA
CTCAGAAGTCCCAATCGTCGTCGTCGGTTTCCACGGCCTTCCCCATGACATAGGAGGACCCGGAACCGGAGAAGAAATCGTGGTTCTCGTCGGCGTTGGGGCTCAGCGAGGCGATGATGGCCGGGTTCACATCGGTGGTGTCGGCGGGGAAGAGGGCGGGATAGCCCAGGTTCATCAGCGCCTTGTTTCCGTTGTACCGCAGGAACTTCTCCACATCATCGACCAGGCCCACACCCGAGTACAGACTCTCCGTGTACTCCACCTCGTTGTCGTAGAGGTCACCCAGGAGTTCGTAGGTATAGTCGCTCATGACCTGTCGCTCGGACTCGGAGACCTTGGCCAGGCCCTTCTGGTACTTGTACCCGATGTAATACCCGTGCACGGCCTCGTCCCGGATGATGAGGCGGATCAGGTCGGCCGTGTTGGTCAGCTTGGCATGGCTGGAGAAGTACATGGGCAGATAGAAGCCGGAATAGAAGAGGAAGGACTCCAGCAGGGTGGAGGCCACCTTGCGCTTCAGGGGGTTGTCACCCTCGTAATAGTTCAGAACGATCTGAGCCTTGCGCTGAAGGAACTCGTTCTCTTCGCTCCACTGGAAGGCCGCATCGATCTCGGGGGTGGAGGCCAGGGTGGAGAAGATGGAGGAGTAGGACTTGGCATGCACCGATTCCATGAAGGAGATGTTGGTGTAGACAGCCTCCTCGTGCGGGGTCAGGGCATCAGGGATCAGGCTGACGGCGCCCACCGTGCCCTGGATGGTGTCGAGGAGGGTCAAGCCGGTGAAGACACGCATGGTCAGCGTGTGCTCCTCTTCGGTCATGGCCTGCCAGGAGGGCAGATCATTGCTGACCGGAACCTTCTCGGGCAGCCAGAAGTTACCGGTAAGACGGTCCCAGACCTCCAGGTCCTTATCATCCTCCAGGCGGTTCCAGTTGATGGCGGTGACCCGATCGATCAGTTTCAGCGGCTGGCGCGGGATGGAAATAGGTGGGACCATGATGACGCTCCTTTTATTGGGTGGGACGGGCTTGAAACCGGCCCTGACTACTTCTATAAGTCAACGTTTGATTCCGACGACCAGGGACGCGGCCTGGCGGGCATCGGGTGGAATGACCAGTCTATCGGACGAACCGACATGCAGGGCCATGACAGAGGGCGACCGGCCCGTCCCAAAAGGGGCGGAGCCGGTCACGGTAGCGGTCCGAGGTGTGTCGGACCCGCAGGGGTCAGAGCATGCAGCTGACGCAGCCTTCGACCTCGGTACCCTCCAGGGCCTGCTGGCGGATGCGGATGTAGTAGAGGGTCTTGATCCCCTTGCGCCAGGCGTAGATCTGGGCCTTGTTCAGGTCACGGGTGGTGGCCGTATCAGGGAAGAAGAGGGTCAGCGAGAGCCCCTGGTCCACATGCTGGGTGGCCTCGGCATAGGTATCCACTATCTTCTGCCAACCAATCTCATAGGCATCCTCGAAGTACTCAAGGTTCTCATTGGTCATATAGGGAGCCGGATAGTAGACGCGCCCGATCTTACCCTCCTTGCGAATCTCGATCTTGGAGGCAATCGGGTGGATGGAGCTGGTTGAGTGGTTGATGTATGAAATCGAACCGGTGGGGGGAACGGCCTGGAGGTTCTGGTTGTAGATGCCGTCCTTGAGGATGTCCGCCTGGAGCTGCTTCCAGTCCTCGACCGTGGGAATCTCCACCCCGTACTGGTTGAAGAGATCCTTGACCCGCTGGGTTCTGGGTTCCAGGGACCTGCGGCCATCCGTGTACTTATCGAAGTAGTTCCCCTGCCCGGCCGGCTTGGCATAGTCGGACCTGGGGAAGGAATCGAAGGCCTTCCCCCGCTCGACGGCAATCCTATGCGAGGCCTTGTAGGAGTGGTAGGCAACGGTCATGAAGTACATGTCCGTAAAGTCCAACCCCTCCTCGGACCCGTAGTGAATTCCCTCACGGGCCAGGAATCCATGGAGGTTCATCTGCCCCAGACCGATGGCGTGACCCTCATCGTTGCCCCGCTTGATGGAGGGGACGGCCTCGATGTTGGTATGGTCCGCCACCGAGGTCAGGGCCCGCACCGAGGTCTCCACCGTGTCGGCCAGACCACCATCCATGGCCTTGGCGATGTTGAGTGACCCCAGGTTGCAGGAAATGTCGCGACCGACATGGTCGTAGTCAAGGTTCTCGGTATAGGTGCTGGGCTCCTGGACCTGAAGAATCTCCGAGCAGAGGTTCGACATGGTGATGCGCCCGTCAATCGGGTTGGCCTTGTTGACCGTGTCCTCAAAGAGGATGTAGGGGTAGCCGGACTCGAACTGGATCTCGGCCAGGGTCATGAAGAAGTCACGGGCGTCGATGTACTTCTTGTGGATTCGCTTGTCCTTGACCATCTCATCGTAGTGCTCGCTGATGGAGATGTCCGCGAAGGGCTTCCCGTAGATCCTCTCCACATCGTAGGGGGAGAAGAGGGCCATGGGGGCCCTCTGCTTGGCCAGCTCGAAGGTGATGTCGGGAATGACCACGCCCAGGGCGAGGGACTTGATGCGAATCTTCTCGTCCGCGTTCTCACGCTTGGTATCCAGGAAGCGCATGATATCGGGATGGTGGGCCGAAAGATAAACGGCACCTGCACCCTGACGGGCACCAAGCTGGTTGGCGTAGGAGAAGGAGTCCTCCAGGAGCTTCATGACCGGCACCACGCCGCTGGACTGGTTCTCGATGTGCTTGATGGGTGCGCCCATCTCGCGCAGATTGCTGAGGAGAAGGGCGACGCCACCGCCGCGCTTGGAGAGCTGGAGGGCGGCATTGACGCCACGGGAGATGGACTCCATGTTGTCTTCGATACGCACCAGGAAGCAGGAGACCGGCTCCCCCCTCTGAGCCTTGCCCAGGTTCAGGAAGGTGGGCGTGGCGGGCTGGAAGCGGCCGGAGATGATCTCATCCGCATACTTGATTGCCGCATCCTCGTCACCATCCGCCAGCTCCAAGGCCACGGCCACTGAACGCTGGGGAAAGTCCTCAAGGTACTGCTTGCCGTCAAAGCTCTTCAGCGCATAGGAGGTATAGAACTTGAAGGCACCCAGGAAGGTATCGAACTCGAATCCGCTTTTGGCTGCGTGGTCGTAGATCCTGTCCAGGAACTCGGGGGTGTAACGCTCGAAGACCTTCCGATCGTAGTACTCGTTATCCAGCAGATACCTGAGCCGCTCGGCGGTGGAAGGGAAGGCCATGGTGTTGGCAGCCACATGGTGGGTGACATACTGGCGCTCGGCCTCCTTGTCCTTGTTGAATTGGATCCTGCCATCCGCGTCACGCGTCATAGAGGTTGAGCATGGCGTTCAGCGCATGATAGTCATGCGCTGGATCATGGTCCTGCTCCTCACGGGTCCCCGTCTTGTCCAAACTGAGCGAAGTATCGTCGTAGGCGCCCATCTGCGTCCTTTCCTGGCTTGTCTGTATCGGTGTCTTGTTGTTTTTATTCAGGATGATTGTGGAAGAAGTCGAGCACACCCTTACGGACCTTGTCTTCGTCTTCCTTGGTGCCCATGAGTTCGAAATAGTAGAGGAAGGGCACCTGGCACTTGCGTGAGATGATGTCACCGGCCATGCAGAAGGCGTCGCCGAAGTTGGTGTTGCCCGAAGCGATGACCCCACGGATGCAGGCCCGGTTCTGCGGATCGTTGAGGAAGCGCTTTATCTGGGGCATGACCGCCTTCTTGGCCGAACCGCCACCATAGGTCGGCACCACCAGAATGTAAGGTTGGTTCACCTTGAGCTCAGGATCCTTGGGACGGAGGGGGATTCGGAACACATCAATCCCCTCATCCTCCAGATGGCAATTGGCGATGAATCTGGCCGTGTTCTGCGAGGCCGAGGAGAAATAGACCACCGACCCTACACGGTCCCCCTTTGCAGCCAGCTCCGGAGGGCTGACCTCCCCCTGGTCCCCCGGCCCGACTGGACCCGGTTTCGCCATATCCGACATACGATGACCTCCTGAAGCCTCCGGATCTCCCCGGATAAAACCTGCGTGCTCCCTGCCTTCAAATCAGGAAGCCTCAACTACTATATATGGGGACTCGCCGCAAAACGAGCACCACATATTGTGCCAACTGTTCTTCATCTCACATAGATGCCCATCCCGGGCAATATTTCAGAAATCCCAGTCGCCGTCATCCGTGGACTCCGAATGTCCCATGACATAGGATGACCCGGACCCGGAGAAGAAATCGTGATTCTCATTGGCCGACGGAGACAGTGCGGCCAGAATCTCCGAACTGACAGCGGTCTGGTCCGATCCGAACCGTGCCGGATAGCCCAGGTTCATCAGCGCCTTGTTGGCGTTGTACCGAACAAAGGCGAAGACATCGTCCACAAAGGGGAACCCCTCATAGATCTGGCCCGAGTAGACCATCTCCATGTCATAGAGCCTGTCGAGAAGGTCATTGGTGAACTTCTCCAGCATGACGCGGTCACCCTCGGTCCTATCCTCCAGGCCCCGCTGGAACTTATAACCGGAGTAGTAGCCATGAATGGCCTTGTCGCGCAGAATCAGGCGAATCATATCAGCCGTGTTCATCAGCTTGGCGTGACTGGAGAAATACAGCGGCAGATAGAACCCGGCATAGAGCATGAGGGAGGAGAGCATGGTGGAAGCCACCTTGCGCTTCAACGGATCATCGCTGACATACTCCTGCAGGACCGCATGGACCCGCTCCTGGAGGACGTCATTGGCCACGGCCCAGCGATAGGCCCTGTCGATCTCGTCGCTGGAGCAGAGGGTGGAGAAGACCGACGAGTAGGACCGGGCATGGACCGACTGCATGAAGGCGATATTGGTATAGATGGCCTGCTCCTGCTCGGTGCGGGCATGATCTATCTGAACCAGCTCTCCGATGGTGGCCTGGGTGGTATCCAGCATGGTCAGACCGGTGAAGACCCGGACCGTGGTCTGCCGCTCATGCTCGGTCAGACCATTCCAGGAGGGAATGTCATTGGACAGAGGAACCTTTTCGGGGAGCCAGAAGTTGGAGACCAGGCGATTCCAGACCTCCAGGTCCTTCTCATCGGTGATGTGGTTCCAATTGACCGGTCGGACCCTGCCCTCGGGATTGACCCGGTACTCGGGCGGGGTAATGGAGGCCTTCATCATCGCATCATCCGCATAGGCCCCGGCTGCCTCGGTCTCGATTTTCGCACTCATGTCCGTCCTACCTTTCATAACGTCTTCTACCCCCGCTCATATGGTTCTCGTCCGCAGCAGTCCTTGGACGTACCCTGCAACAGACGGATATGGATAGGGCTACTGCCGTACAGGCACTAGATATTGTTATCTCCAGTGCAGGCAACCACAATATATAGGCTCCCAAGAGCGGACACAAGCCTAAAAGCGGGTGTTTATGGCAGCTTGTGAGAAACCTAACAAAAACTTCGACCCCTCAAAGATTGGCTGTTCGGGACCTGGCACCCCTGTTCCACAAGCCATAAACAGAGGGGGAAAAGCGAAGGACAGAAAAGGGCCATGCCAGCGCATACAGAGCCGGGCGGTCTCCCTTGACCGCCCGCGGCTCCCACAAATCCTCAGATCAGCCCCTGCTCCTTAAGATCGGCACAGACCCGGATGACCCGGTCGTTGGCCTCGGCCTCCCCGATGGTTATGCGTATGCCTTCGTTCGGGAAGGCCCTGACCGCGAGACCGTTGGCAAGGAAGCTCTCATAGGCCTGGTCCGTGGCCCCACCCAGGGGCAACCAGAAGTAGTTGGCCCGGGAGCGGGGAATCCACCATCCCTGCCCCTCCAGGGCGGCAACCACCTTGGCTCGTTCCTTCATGATGCCTTCCACGCGATCCCGGAGCTGGTCGGACACATCGAGACTGACCATGGCGGCCTCCTGGGCCATGTCGCTGACACCGAAGGGCAGGGCCACCTTGCTCAGTCCCTGGACCACCTCGGCCGGTGCCACAGCGTAGCCGATGCGCAGGCCGGCCAAGCCATAGGCCTTGGAAAAGGTTCTTGCCACAACCACATTGGGATGATTCCGCATGAGTTCCAGCCCCTTGGCCTGGGCGGGATCGTCATTGAACTGGAAATACGCCTCGTCGAAGAGAACCAGGACATCATCGGGCACCGCCTCAAGCAGACGCAGCGCCTCCTCCTGCGAAACCGAAGTACCCGTAGGATTGTTGGGATTATTGACGATGACCAGACGCGTTCTGTCGGTCAGAGAGGCAATCATGGCCTCGATGTCGTGCCCGCCCCTGCCGTTCAACGGCACCGGCACGCAGGTGGCTCCGGCACCGGTCACGATGATGGGATAGGCCTCGAAACTCCGCCAGGGATACATCACCTCATCCCCCTCGCCGGCCACAAGATTGACCAGCTGGGTGATGACCTCCGTGGACCCGCACCCCAGCTGGATGTTCTCCGGGGCAACCTGGTGCAGGCGGGCCAGGCGCTCGACGAGCACCGTCCCACGCATATCCGGATAGCGGTTCAGGTGAACCAGGGCCCGGCCCGACACGGCCTCCCTGACAGCGGCCAGAGGAGGATAGGGGTTCTCATTGCTGGAGATCTTATAGGGGGTCAGTCCCGGGGTGACCGGAGCCGCCTTGCCCTGCCTGTAGCCGGGCAGGGCATCAATGGAAGAGCGATGTCTGTATGCCATGGCCACCATGGTAGCGGGCCATGCGCCGGGCACAAGCTTCAGGACCACTTACGACACCACAGGGCTCGCATAGCGGACCCGGACGGCGCCCGGATACGAAAAAGCCGGGGCCCCTCAGGACACCCGGCCAGAAAAATCGATAAGGTCCAGCCTACTTGAGGATGGCCAGCACGTCGCGCGCGGACACGATCAGGTAGTCCTCACCACCATAGGTGACCTCGGTGCCGCCGTACTTGGAATACAGAACCTTGTCGCCAACCTTGACATCCATGGGGATACGCTCCCCCTTGTCATCACGGCGTCCGGGACCGGCAGCCAGGACTTCGCCCTGCTGGGGCTTCTCCTTGGCGGTATCAGGAATCACCAGACCCGAAGCGGTCTTGGTCTCCGCCTCAGCCTGCTTGATGACGATCTTATCTTCCAACGGTGTGAGTGCAATCGACAC

Protein sequences of DBSCAN-SWA_1

>NZ_CP007287|1459890:1466994|1459890_1460886_-|WP_033490689.1|DBSCAN-SWA
MVPPISIPRQPLKLIDRVTAINWNRLEDDKDLEVWDRLTGNFWLPEKVPVSNDLPSWQAMTEEEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNISFMESVHAKSYSSIFSTLASTPEIDAAFQWSEENEFLQRKAQIVLNYYEGDNPLKRKVASTLLESFLFYSGFYLPMYFSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLAKVSESERQVMSDYTYELLGDLYDNEVEYTESLYSGVGLVDDVEKFLRYNGNKALMNLGYPALFPADTTDVNPAIIASLSPNADENHDFFSGSGSSYVMGKAVETDDDDWDF
>NZ_CP007287|1459890:1466994|1461115_1463206_-|WP_038459292.1|DBSCAN-SWA
MTRDADGRIQFNKDKEAERQYVTHHVAANTMAFPSTAERLRYLLDNEYYDRKVFERYTPEFLDRIYDHAAKSGFEFDTFLGAFKFYTSYALKSFDGKQYLEDFPQRSVAVALELADGDEDAAIKYADEIISGRFQPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGVNAALQLSKRGGGVALLLSNLREMGAPIKHIENQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLSAHHPDIMRFLDTKRENADEKIRIKSLALGVVIPDITFELAKQRAPMALFSPYDVERIYGKPFADISISEHYDEMVKDKRIHKKYIDARDFFMTLAEIQFESGYPYILFEDTVNKANPIDGRITMSNLCSEILQVQEPSTYTENLDYDHVGRDISCNLGSLNIAKAMDGGLADTVETSVRALTSVADHTNIEAVPSIKRGNDEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHSYKASHRIAVERGKAFDSFPRSDYAKPAGQGNYFDKYTDGRRSLEPRTQRVKDLFNQYGVEIPTVEDWKQLQADILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTNENLEYFEDAYEIGWQKIVDTYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQQALEGTEVEGCVSCML
>NZ_CP007287|1459890:1466994|1465466_1466549_-|WP_033497842.1|DBSCAN-SWA
MAYRHRSSIDALPGYRQGKAAPVTPGLTPYKISSNENPYPPLAAVREAVSGRALVHLNRYPDMRGTVLVERLARLHQVAPENIQLGCGSTEVITQLVNLVAGEGDEVMYPWRSFEAYPIIVTGAGATCVPVPLNGRGGHDIEAMIASLTDRTRLVIVNNPNNPTGTSVSQEEALRLLEAVPDDVLVLFDEAYFQFNDDPAQAKGLELMRNHPNVVVARTFSKAYGLAGLRIGYAVAPAEVVQGLSKVALPFGVSDMAQEAAMVSLDVSDQLRDRVEGIMKERAKVVAALEGQGWWIPRSRANYFWLPLGGATDQAYESFLANGLAVRAFPNEGIRITIGEAEANDRVIRVCADLKEQGLI
>NZ_CP007287|1459890:1466994|1464039_1465089_-|WP_081830821.1|DBSCAN-SWA
MSAKIETEAAGAYADDAMMKASITPPEYRVNPEGRVRPVNWNHITDEKDLEVWNRLVSNFWLPEKVPLSNDIPSWNGLTEHERQTTVRVFTGLTMLDTTQATIGELVQIDHARTEQEQAIYTNIAFMQSVHARSYSSVFSTLCSSDEIDRAYRWAVANDVLQERVHAVLQEYVSDDPLKRKVASTMLSSLMLYAGFYLPLYFSSHAKLMNTADMIRLILRDKAIHGYYSGYKFQRGLEDRTEGDRVMLEKFTNDLLDRLYDMEMVYSGQIYEGFPFVDDVFAFVRYNANKALMNLGYPARFGSDQTAVSSEILAALSPSANENHDFFSGSGSSYVMGHSESTDDGDWDF
>NZ_CP007287|1459890:1466994|1463361_1463862_-|WP_045921885.1|DBSCAN-SWA
MAKPGPVGPGDQGEVSPPELAAKGDRVGSVVYFSSASQNTARFIANCHLEDEGIDVFRIPLRPKDPELKVNQPYILVVPTYGGGSAKKAVMPQIKRFLNDPQNRACIRGVIASGNTNFGDAFCMAGDIISRKCQVPFLYYFELMGTKEDEDKVRKGVLDFFHNHPE
>NZ_CP007287|1459890:1466994|1466700_1466994_-|WP_033490691.1|DBSCAN-SWA
MSIALTPLEDKIVIKQAEAETKTASGLVIPDTAKEKPQQGEVLAAGPGRRDDKGERIPMDVKVGDKVLYSKYGGTEVTYGGEDYLIVSARDVLAILK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033490689.1|1459890_1460886_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.2e-142	77.9
WP_038459292.1|1461115_1463206_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.2e-192	49.6
WP_045921885.1|1463361_1463862_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	J9PTY0	Bacillus_phage	2.6e-07	27.6
WP_081830821.1|1464039_1465089_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.5e-110	62.3
WP_033497842.1|1465466_1466549_-	histidinol-phosphate transaminase	A0A1X7QHI1	Faustovirus	3.1e-13	26.0
WP_033490691.1|1466700_1466994_-	co-chaperone GroES	A0A221S3C8	uncultured_virus	9.5e-18	52.2