CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009110	Amycolatopsis methanolica 239 chromosome, complete genome	8 crisprs	csa3,WYL,DinG,cas4,DEDDh,cas3	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP009110

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009110_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_1

863920-864014

Orphan

Consensus_repeat	Method
CCGAACGGCAACGGCCCGGGATCGGCGGCCAGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_1

>merge|NZ_CP009110|1|863920-864014|CRISPRCasFinder
CCGAACGGCAACGGCCCGGGATCGGCGGCCAGCTCGCTGCTCGCCTCCGCGCGGGGCGGGCCGAACGGCAACGGCCCGGGATCGGCCGCCAGCTC

>NZ_CP009110|1|1|863920-864014|CRISPRCasFinder
CCGAACGGCAACGGCCCGGGATCGGCGGCCAGCTC	GCTGCTCGCCTCCGCGCGGGGCGGG
CCGAACGGCAACGGCCCGGGATCGGCCGCCAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017986804.1\|854168_854621_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP009110.1\|WP_081617658.1\|872089_872995_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NZ_CP009110.1\|WP_017986808.1\|865065_866937_+\|methylmalonyl-CoA-mutase-small-subunit	unknown	unknown	gnl\|CDD\|239649
NZ_CP009110.1\|WP_017986806.1\|862161_862953_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP009110.1\|WP_017986810.1\|869109_870093_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_CP009110.1\|WP_017986800.1\|851625_852231_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_CP009110.1\|WP_017986811.1\|870135_870426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017986812.1\|870590_871886_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NZ_CP009110.1\|WP_017986796.1\|848749_849703_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|188646
NZ_CP009110.1\|WP_017986802.1\|852716_853697_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_CP009110.1\|WP_017986809.1\|866936_869105_+\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP009110.1\|WP_026153794.1\|853711_854101_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017986801.1\|852315_852720_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP009110.1\|WP_017986816.1\|875158_875662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_038531865.1\|850454_851078_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP009110.1\|WP_017986817.1\|875658_876186_+\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
NZ_CP009110.1\|WP_017986815.1\|873671_875075_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
NZ_CP009110.1\|WP_017986797.1\|849699_850320_-\|DUF1707-and-DUF2154-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP009110.1\|WP_017986805.1\|860524_862165_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP009110.1\|WP_081617741.1\|873119_873572_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017986804.1\|854168_854621_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.38912e-08
NZ_CP009110.1\|WP_017986817.1\|875658_876186_+\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	1.63426e-60
NZ_CP009110.1\|WP_017986808.1\|865065_866937_+\|methylmalonyl-CoA-mutase-small-subunit	gnl\|CDD\|239649	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers. For P. shermanni MCM, it is known that only the alpha subunit binds coenzyme B12 and substrates. The role of the beta subunit is unclear. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversible inactivation. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Examples include P. shermanni MCM during propionic acid fermentation and Streptomyces MCM in polyketide biosynthesis.	7.0076e-179
NZ_CP009110.1\|WP_017986806.1\|862161_862953_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	2.35818e-127
NZ_CP009110.1\|WP_017986810.1\|869109_870093_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NZ_CP009110.1\|WP_017986800.1\|851625_852231_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	1.45958e-13
NZ_CP009110.1\|WP_017986812.1\|870590_871886_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP009110.1\|WP_017986809.1\|866936_869105_+\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP009110.1\|WP_017986802.1\|852716_853697_+\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
NZ_CP009110.1\|WP_017986796.1\|848749_849703_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|188646	cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.	3.80321e-72
NZ_CP009110.1\|WP_081617658.1\|872089_872995_+\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	1.75117e-07
NZ_CP009110.1\|WP_017986801.1\|852315_852720_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.66329e-52
NZ_CP009110.1\|WP_038531865.1\|850454_851078_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.57699e-104
NZ_CP009110.1\|WP_017986815.1\|873671_875075_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_CP009110.1\|WP_017986797.1\|849699_850320_-\|DUF1707-and-DUF2154-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	6.88066e-23
NZ_CP009110.1\|WP_017986805.1\|860524_862165_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP009110.1\|WP_081617741.1\|873119_873572_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	5.18582e-28

>NZ_CP009110.1|WP_017986806.1|862161_862953_-|purine-nucleoside-phosphorylase
MTEQDVASAAAATIAERTGFAKHDIAVVLGSGWRPAADVIGEPEAEIPLGELPGFETPTAVGHGGTVRSVDVDGKRTLVLLGRTHLYEGKGVGRVVHNVRTAAAAGVKSVLLTNAAGGLRGDYQVGQPVLICDHLNMTATSPITGANFVDLVDLYSHRLRDLAREIDPSLTEGVYAGLPGPHFETPAEIRMLRTLGADLVGMSTVLEAIAARAAGVEVFGLSLVTNLAAGMTGEPLSHQEVLEAGRASAEKMGTLLRRLVARA
>NZ_CP009110.1|WP_017986805.1|860524_862165_-|phospho-sugar-mutase
MSRLTPELRDRAMRWIADDVDAAARQELQAVLAAAMNGAPDAVTDLDDRMAGPLEFGTAGLRGPVRAGPNGMNTAVVVRTTAGVATWLTAHGKAGGIVVVGRDARHGSEEFATAAAEVLHAAGFDVRVLPRPLPTPLVAFATKHLGAAAGIQITASHNPPADNGYKLYDDVAIQIVPPADAEIEAAIAAAPGAISVPRKPGATVLGDEILDEYLYRVSQVPRSPHRGLRVAATALHGVGAEVLREALSRAGFADVHLVAEQSAPDADFPTVSFPNPEEPGATDLLLALAAEVDADLAIALDPDADRCAVGVPDATGQWRMLRGDETGVLLGDYVLSTTSNPDPLVATTIVSAAMLGDIARAHGARYAETLTGFKWLTRSGDGLVFAYEEALGLCVNPDFVRDKDGIAAATLACDVAAKLKAEGRSLLDELDRLAVAHGVYVTDQVSLRVTDLSVRGQLMARLRKSPPAELAGAAVEVEDLLPQTDALRIAGGGSRVVIRPSGTEPKLKCYLQVTRPVPDEAALAEVRVDATSTMAALRADVEALLA
>NZ_CP009110.1|WP_017986804.1|854168_854621_-|flavodoxin-family-protein
MPTLLIVHHTPSPNLQAMFEAVVAGATTDEIEGVTVVRRAALAATATDVLDADGYLLGTTANLGYMSGALKHFFDQVYYPCLDSTRGRPFGCYVHGGSDVSGTVRGIESITTGLGWEKAAEIVTVTGEPSKADLERCWELGATVAAGLME
>NZ_CP009110.1|WP_026153794.1|853711_854101_-|hypothetical-protein
MSGSTQLFTVIALVSLPTVMFGGYSLLALLRKRKLTDEQRAYFRAGHAHAGVLLVLALITLQLVAAGGLGAAGQWVVCLLLLVGILAQSGGMFLNLLPGRKPLAHGVTVSGAVLLAAAMITTAVGVAMA
>NZ_CP009110.1|WP_017986802.1|852716_853697_+|aldo/keto-reductase
MIGTRKLGELEVGAQGLGCMGMSQAYGVRGDDAESIATIHRALELGVTLLDTADVYGAGANEELVGRAIAGKRDQVVLATKFGIVLGAEGQQVRGDAAYVRQCAEDSLRRLGVDHIDLYYQHRVDPAVPVEETWGALSELVAEGKVRHLGISEASAETIRRAHAVHPVTALQSEWSLWTRGIEDEVVPACRELGIGIVPFSPLGRGFLTGSITKVDELPSDDMRRNLPRFAEGNLDRNLRIVEALRKLAAEKGVTAGQLALAWVQSRGVDVVPIPGTKRRKYLEENVAAAALELSEADIRSIEAAVPAEAVAGERYPAALARNVGK
>NZ_CP009110.1|WP_017986801.1|852315_852720_+|MerR-family-transcriptional-regulator
MSYSIAEAARRSGLSIDTLRYYERIKLLDPPARDTAGRRAYSDADLAWLEFLTKLRTTGMPIKMMREYAQLRAAGDASAGRRRAILLEQRRSVAERIAELQACMDVLNYKIENYDRICARVPGAVSVVREEISA
>NZ_CP009110.1|WP_017986800.1|851625_852231_-|TetR/AcrR-family-transcriptional-regulator
MPRPRTHDEALRLKLLDRAGELLSADGPKALSLRKLAADVGTSTTAVYSLFGGKPELVNAVYLEGFRRFGARLRGISRSGDPVEDFVRLGLAYRESALADPHLYSIMFTKALPGFEPGAEATRTARDSLAPLVDTVRAAISAGVFRAVAPEVIAVSAWGIVHGLVSLELNGNLPRDLDVVASYEAALRAHADGWRLTQVRE
>NZ_CP009110.1|WP_038531865.1|850454_851078_+|uracil-phosphoribosyltransferase
MDVLVVDHPLAKARLSTMRDARTDSAAFRAALHELTVMLIYEATREAPVRTERIHTPVARTDAYRLANPPLLVPVLRAGLGMADQAHKLIPEAQMGFVGLARDEETLQPTPYMESLPDDLSDRPVFVLDPMLATGGSMEYTIRLLTGRGATDVTAICALAAPEGIKHLQDSGLPVRVVTASVDERLNDSGFIVPGLGDAGDRQYGAR
>NZ_CP009110.1|WP_017986797.1|849699_850320_-|DUF1707-and-DUF2154-domain-containing-protein
MRASDADRERVAQILHNALAEGRITVQELEERLDTVYAAKTLAELEPPVADLPGVSSAAVQPAAPRALTPDDRIGGVPGSKASVAVMSGVTRKGPWTVPPEHTSVAFWGGVEMDLRSARFSERHTTITAVAIMGGIDIVVPDDIIVEVTGVGFMGAFESQDRGGASTQPPPPGAPVVKVTGLAFWGAVTVVRKPRKSQTPQLDSGG
>NZ_CP009110.1|WP_017986796.1|848749_849703_-|deoxyribose-phosphate-aldolase
MSAPTLPAALADATRDDASLRRFLHGLPGVDQVGVEARATALATRSIKKSSKLWAIDTAISMVDLTTLEGADTHGKVRALTAKARRPDPERPDTPQVAAVCVYPDLVATAVDGLKGTGIGVASVATAFPSGRSSRQVKLADVALAVESGATEVDMVIDRGAFLEGRYGEVFEDIQAVKAACGDAHLKVILETGELVTYDNVRRASWLALLAGGDFIKTSTGKVSPAATLPVTHVMLQAVRDWFTTTGELRGVKPAGGIRTTKDAIKYLVAVHEVAGEQWLTPELFRFGASSLLNDLLLQRRTQHDGHYSGPDYVAVD
>NZ_CP009110.1|WP_017986808.1|865065_866937_+|methylmalonyl-CoA-mutase-small-subunit
MTQAGTTAPTPDSPDELALAAEFGTPRHEDWQRLVAGVLTKSGVLPKDFDGAPESLLTSKTYDGIEIRPLYTADDATAPAGFPGLPPYVRGARAEGNVGTGWDVRVLHGGADAAETNKAILADLENGASSVWLRVGGDALPLDALADALNEVYLDLAPIVLDPGADYEAAADALLGLLAEKNIPDSEVTGTIGADPIALRARTGRPHATAPAAALAARLSAKHPKLRTLVVNALPYHEAGGSDAQELGAAIAAGVAYLRALTDAGLSVDAAADQLEFRFAATADQFLTIAKLRAARRLWARVCEVCGATAGRGMRQHAVTSPAMFTRRDPWVNMLRTTVACFAAGVGGADAVTVLPFDFAIGLPDAFSRRIARNTQSILLEESKLSGVIDPAGGSWYVENLTDALANAAWREFTEIEREGGIEAVLDSGALAARLAETWEARQKRLATRKDPITGVSEFPDLHEKAVERTPAPSVVDEGGLPRVRYAQAYEELRDRSDAHLAATGERPKVFLATLGPVAAHTARATFASNLLQAGGIEPLNPGAVEDVVAAFRESGATVACLCGTDKLYAEHAADTARALTDAGAARVILAGKGQYPGVDTYVHAGCDALAALAAILDTLGVK
>NZ_CP009110.1|WP_017986809.1|866936_869105_+|methylmalonyl-CoA-mutase
MAIPDFTDVELGIPDPGSQTDWAEALHSSTGKGADALTWETPEGIGIKPLYTAEDTTGLDFLRTYPGIAPFLRGPYPTMYVNQPWTIRQYAGFSTASESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPRVAGDVGMAGVAIDSIYDMRQLFDGIPLDKMSVSMTMNGAVLPVMALYIVAAEEQGVRPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISDIFAYTSQRMPRFNSISISGYHMQEAGATADLELAYTLADGVEYIRAGMDAGLEVDKFAPRLSFFWAIGMNFFMEVAKLRAARLLWAKLVKQFSPRSEKSLSLRTHSQTSGWSLTAQDVFNNVIRTCVEAMAATQGHTQSLHTNALDEALALPTDFSARIARNTQLLLQQESGTTRVIDPWGGSAFVEKLTYDLARKAWGHISEVESAGGMARAIDAGIPKLRIEEAAARTQARIDSGRQPVIGVNKYQVVDDEQIDVLKVDNAGVRAQQLEKLRRLREERDEDATQDALRRLTAAAEGSGNLLELAVDAARAKATVGEISDALEKVWGRHAGQIRTISGVYRDEVGKSGNVEKARARVEAFAEAEGRRPRILVAKMGQDGHDRGQKVIATAFADLGFDVDVGPLFSTPAEVARQAIEADVHVVGVSSLAAGHLSLVPALREELAQLGREDIMIVCGGVIPPQDYDELRAAGASAIFGPGTVIADAALDLLDQLEQRES
>NZ_CP009110.1|WP_017986810.1|869109_870093_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MPRKIDVGAYAKGVLAGDRGTLSRAITLVESQRADHRQLAQELLVELLPHAGGARRVGITGVPGVGKSTFIDQLGTDLTESGHRVAVLAVDPSSTRTGGSILGDKTRMARLANDPAAFIRPSPTSGTLGGVARATRETIVLMEAAGYDVVLVETVGVGQSEVTVANMVDCFLFLTLARTGDQLQGIKKGVLELADVIAVNKADGEHERDAKRAARELAGALRMIYGPDAAWTPPVLTCSGLNDIGLDTVWQQIERHRETLAGSGELDRKRKQQQVDWTWAMVREQLQARLAEHPGVKALVPEVEEDVREGRLTATLAAQKILDAFSA
>NZ_CP009110.1|WP_017986811.1|870135_870426_+|hypothetical-protein
MVKVRAVLAGLMLTTMVTFAVPTAPALAAPVSVHVAAGVVAQQTTDPGPRINPDENSKANQEKTKNKIIVGVLAAVLAAIVLWGRSVRRKKRKASS
>NZ_CP009110.1|WP_017986812.1|870590_871886_+|amidohydrolase
MTVLDSRPEVPGDHGGRPTSFEAPHALITADGVSMAPVTDLGAGRGPFWLDEWLERGGTDLVAWRRHIHAHPELARHEFATTELICDVLRSAGLDPEILPGGTGVVCDVGSGDRCVALRADIDALPLTEATGLPYSSTVDGAAHACGHDAHTAILLGAAKALASAPELPGRVRLIFQPAEEVMPGGALDVITAGGLDGVDRIFGLHCDPRVEVGKIGTRVGALTSAADLIELRLTSPGGHTSRPHLTADLVHALGVAITSLPSLLSRRVDPRSGTVLVWGAVHAGQAANAVPEEGVLRGTLRTADHEVWKALEPLVRSSVESLLTPYGVGFELDYRRGVPPVVGDEDSTSLLRAGIEAALGDDAVTGTEQSSGGEDFAWYLEHVPGAFCRLGVWSGEGDQRDLHRPTFELDERALHVGVRVLVHTALAALA
>NZ_CP009110.1|WP_081617658.1|872089_872995_+|DUF559-domain-containing-protein
MFGIPDTEHGAARRSDLIDALGERTLRGALRDKVLIHLWRGVIIDARRALDPLTRAAAAVLAGGPEAVLSHHTAAWLHGCTAARSNQIHVTVPYSVWVRSKTGLVVHHDRFDRGDVVELQGLPVFALEPVLADLLCTEDRWKALACLDQALNEQSPHEVADFRKEVDRRLVERDDRRGIRNAEALIVLGTTGAESPQESRLRLTIIDAGFPIPTTQHPITTLQGELIYRLDLAWAELRIGVEYDGYEAHEGRELHDATRDDRLSSRGWRIIRVRKDDLVDPSRFLAELREAFRERGYRIYP
>NZ_CP009110.1|WP_081617741.1|873119_873572_-|gamma-glutamylcyclotransferase
MPLYAAYGSNMDPNQMMERAPHSPMAGTGWLEGWRLTFGGEDLGWEGALATIVEDPGSRVFVVLYDVTPLDEALLDRWEGGELGMHNKIRLRVQTMDGSALAWLYVLDAYEGGLPSARYLGVLADAAEAAGAPTDYVDDLRTRPCRGITS
>NZ_CP009110.1|WP_017986815.1|873671_875075_+|NAD(P)H-quinone-dehydrogenase
MTRIVIMGGGPAGYEAALVAAQHGADVTIVEKEGLGGACVLYDCVPSKTFIASSGARANMHGLGELGIITDMADTSVDLRTVHGRVKGLALAQSADIRARVQREGVKILTGEGRFDDDEPGLATHKVRVMKATGDVDVLDADVVLIATGATPRVLPGAVPDGERILDWRQLYDLPELPEHLVVVGSGVTGAEFASAYTEMGVKVTLVSSRDRVLPHEDADAAAVLEEVFAQRGNTVVKHARAERVERTEKGVEVHLQDGRIIEGTHALMTVGSVPNTKDIGLERVGIEPGPGGFITVDRVSRTSVPGIYAAGDCTGVLMLASVASMQGRIAMWHALGEGVAPIKLKTVAANVFTHPEIATVGISQSAIDSGEVPARTIMLPLATNARAKMEGLRRGFVKLFCRPATGVIVGGVVVAPTASELILPIALAVQNQLTVDHLALTFAVYPSLSGSITEAARQLMRHDDLD
>NZ_CP009110.1|WP_017986816.1|875158_875662_+|hypothetical-protein
MRTTAIVAGIFATLVAATPAFAQTTTTSPEETTSAEETTSAPIPTWLKLSAYSGHAGERVSVAAACEAEASPLTTRALRVTQPLAANAEGHQPWALFAETVIRDVPEGSYPVSFHCGEEPVTVYFTVLDRDSSPAPGKPDRGSAPSPGQTRVVPRGAPQTGDGSLAP
>NZ_CP009110.1|WP_017986817.1|875658_876186_+|class-F-sortase
MIRAVFAAVLGLLLLCGCAASPEQTRPVADPVAVEIPAIGARSTLIPLGLNEDGTVQTPPVTSPGQAGWYSHGPAPGEPGPAVILGHVDGNRQPGIFARLKELSPGDRVEVSRVDGSRAGFVVIRLERVPKAEFPTAAVYGDTAGPELRLITCGGVFDRATRSYRDSVIVYAVLG

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Crispr_ID: NZ_CP009110_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_2

1427389-1427531

Orphan

Consensus_repeat	Method
GGGCTGAGCGACTGGGTGCCGCTGGCGGTTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_2

>merge|NZ_CP009110|2|1427389-1427531|CRISPRCasFinder
TGGCGCTGGGCGAGGGGCCCGCTGGCGGTTGCGCACCGTTCAGGGGCTGAGCGACTGGGTGCCGCTGGCGGTTGCGAACCGTTGAGGCGCTGGGCGGCTGGTGGCGCTGAGGGCCGAGCGACTGGGTGCCGCTGGCGGTTGCG

>NZ_CP009110|2|2|1427389-1427531|CRISPRCasFinder
TGGCGCTGGGCGAGGGGCCCGCTGGCGGTTGCG	CACCGTTCAGGGGCTGAGCGACTGGGTGCCGCTGGCGGTTGCGAACCGTTGAGGCGCTGGGCGGCTGGTGGCGCTGA
GGGCCGAGCGACTGGGTGCCGCTGGCGGTTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017987355.1\|1436509_1437265_+\|peptidyl-tRNA-hydrolase-PTH2	unknown	unknown	gnl\|CDD\|376699
NZ_CP009110.1\|WP_017987356.1\|1437284_1437704_+\|osmotically-inducible-protein-C	unknown	unknown	gnl\|CDD\|224679
NZ_CP009110.1\|WP_026153884.1\|1418235_1419936_+\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271372
NZ_CP009110.1\|WP_026153885.1\|1419949_1420222_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235668
NZ_CP009110.1\|WP_026153883.1\|1417133_1417793_+\|endonuclease-NucS	unknown	unknown	gnl\|CDD\|235114
NZ_CP009110.1\|WP_017987348.1\|1430065_1430365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_026153888.1\|1433479_1435261_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NZ_CP009110.1\|WP_017987346.1\|1427923_1428487_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP009110.1\|WP_026153886.1\|1426055_1427180_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|366747
NZ_CP009110.1\|WP_017987342.1\|1422303_1422927_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP009110.1\|WP_156131621.1\|1417847_1418030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017987340.1\|1420305_1421262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378803
NZ_CP009110.1\|WP_017987354.1\|1435289_1436513_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP009110.1\|WP_017987351.1\|1431811_1432525_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NZ_CP009110.1\|WP_017987350.1\|1430936_1431689_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP009110.1\|WP_017987341.1\|1421297_1422299_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP009110.1\|WP_167345538.1\|1428630_1430049_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP009110.1\|WP_017987349.1\|1430361_1430898_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP009110.1\|WP_017987344.1\|1425791_1425998_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|197903
NZ_CP009110.1\|WP_017987343.1\|1422923_1423598_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017987355.1\|1436509_1437265_+\|peptidyl-tRNA-hydrolase-PTH2	gnl\|CDD\|376699	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2. Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.	5.98772e-09
NZ_CP009110.1\|WP_017987356.1\|1437284_1437704_+\|osmotically-inducible-protein-C	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	2.16386e-17
NZ_CP009110.1\|WP_026153884.1\|1418235_1419936_+\|sodium:solute-symporter-family-protein	gnl\|CDD\|271372	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP009110.1\|WP_026153885.1\|1419949_1420222_+\|hypothetical-protein	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0.00111238
NZ_CP009110.1\|WP_026153883.1\|1417133_1417793_+\|endonuclease-NucS	gnl\|CDD\|235114	PRK03298, PRK03298, endonuclease NucS.	3.06984e-174
NZ_CP009110.1\|WP_017987346.1\|1427923_1428487_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.49668e-10
NZ_CP009110.1\|WP_026153886.1\|1426055_1427180_+\|phosphodiesterase	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	7.44723e-28
NZ_CP009110.1\|WP_017987342.1\|1422303_1422927_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	2.88763e-76
NZ_CP009110.1\|WP_026153888.1\|1433479_1435261_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NZ_CP009110.1\|WP_017987340.1\|1420305_1421262_+\|hypothetical-protein	gnl\|CDD\|378803	pfam12079, DUF3558, Protein of unknown function (DUF3558). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 177 to 195 amino acids in length.	0.00349828
NZ_CP009110.1\|WP_017987354.1\|1435289_1436513_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.08e-93
NZ_CP009110.1\|WP_017987351.1\|1431811_1432525_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	7.43468e-15
NZ_CP009110.1\|WP_017987350.1\|1430936_1431689_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	1.36346e-42
NZ_CP009110.1\|WP_017987341.1\|1421297_1422299_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP009110.1\|WP_167345538.1\|1428630_1430049_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.14481e-60
NZ_CP009110.1\|WP_017987349.1\|1430361_1430898_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.05311e-29
NZ_CP009110.1\|WP_017987344.1\|1425791_1425998_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|197903	smart00834, CxxC_CXXC_SSSS, Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.	4.93877e-10
NZ_CP009110.1\|WP_017987343.1\|1422923_1423598_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	2.87598e-37

>NZ_CP009110.1|WP_026153886.1|1426055_1427180_+|phosphodiesterase
MELPTLSGQGHLAEVVPSVLATLGVPGCVDTLGLPDAAGVCVLLIDGLGSELLRAHADDAPVLTELAKATLTVGCPSTTVAGLAAIGTGVASGEHGMAGYTFEVPGCGVLNALRWREHPGGGELDLRPEDVQPLPTTFERAAAAGVEAVVVAEAKFANSPLTRAVQRGAEYRGVYAMGDLAAETLRALRESPGFCYAYHGQLDELGHRYGPGSPAWVMQLRQVDRLVELLVDGLPPGRVLAVVADHGMVALGANVIDIDVTPELRSGVRAFGGDPRVRHVYTEPGAAEDVLATWRSVLGPRAWVTRRDEAIAAGWLGPRVSDRVRSRFGDVIAAARDDFGMLRRTAEPLESKLIGQHGSMTPAEQLVPLAIAHR
>NZ_CP009110.1|WP_017987344.1|1425791_1425998_-|zinc-ribbon-domain-containing-protein
MPTYAYRCRECTGTFEVNRPMSESSAPATCPEGHTDTVKLLTTVALTGSAAGAPAGGGCCGGACGCGH
>NZ_CP009110.1|WP_017987343.1|1422923_1423598_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MSVGLVLVSHSAKLAEGVAEVAAQMAPDVTIVPAGGLPGGGIGTDYDSVVAAVQRADSGSGVVLLYDLGSAQMTAELAVESLADPSAVGVADAPLVEGTVAAAVAAQNGADRAGVLEAATAAAAPPELAAPAEQATDCVELTLTNEVGLHARPAAVLARSLAELEAEVSVRLGDQEADAHSVLALMALGARKGDRIEVRAGGPQAAEALRVVQDLVEDNFGDPA
>NZ_CP009110.1|WP_017987342.1|1422303_1422927_+|dihydroxyacetone-kinase-subunit-L
MGCTPEGVANALRGAAAVIAEHRAELIELDRAIGDGDHGENMNRGFQAVVAALDSALPETPGGVLKLAATTLISKVGGAAGPLYGTAFLRASTVVSNQPELGAAEVVAALRAGLEGVRARGKAVEGDKTMVDALLPAVAAAEKAGGGDVAAVLSAAAEGAATGAESTVDLVARKGRASYLGERSAGHLDPGARSTSLLLAAFAEAAR
>NZ_CP009110.1|WP_017987341.1|1421297_1422299_+|dihydroxyacetone-kinase-subunit-DhaK
MKKIINDPADVVTESLRGLAAAHADILRVQEDPNVVVRADAPVDGKVAVISGGGSGHEPLHGGFVGVGMLDAAVPGAVFTSPTPDAVQAAISATTGAAGALLIVKNYTGDVLNFETAGELAAAEDLEVRSVVIDDDVAVADSTYTAGRRGVGGTVLLEKIAGAAAERGDSLDAVEALARKVIGQVRSIGVALTAPTVPHVGEPSFDLGADEIEFGIGIHGEPGRERIKAEPADELVARMVGAVVEDLPFTEGDRVLLFTNSMGATPLVELYLAHGIAERLLADRGIMVERRLVGPYITSLEMQGISLTLLKLDDELTELWDAPVNTAALRWKA
>NZ_CP009110.1|WP_017987340.1|1420305_1421262_+|hypothetical-protein
MVLLALTVSACAGPDLGKQNFPRTTVTQTSVATGPVDDAAVSTDALRTVDPCGVLQGDTVTGVGTPVEDSLHPTGLDGCAVEVTDAGGKEARLSLTMGETLLLSSTTPVGTVEGLPVVESDLDDPDTTENEGCVVTAVTSETPAIGISVQVTYQGGDACGAGLTVIREVVAEMHGSPPRMTRAANSAVPLDPCTLVDDAVAAEVLGRSTEKRPGGLHECHWSGGNATGYLRISEAVEPSDGDDGTRVDLGGGITGYQEKRTTAGNSCTIAWTHLRTGDGEGEVVKFEYDNFHDDAAEDDSCGKARRIVDTILPKLPKS
>NZ_CP009110.1|WP_026153885.1|1419949_1420222_+|hypothetical-protein
MASETPVRTRRAGAFDIRLIIALLTGVYGVVLTIMGIAFTDDAELQKAAGVNINLWAGIGMLIFTALFVLWAVLRPIRVPVPEGDETPAG
>NZ_CP009110.1|WP_026153884.1|1418235_1419936_+|sodium:solute-symporter-family-protein
MPVLAAANLRLDAHAIDYVLLAFYFVLVLGIGYLARKQVSSSIDFFLSGRSLPAWVTGLAFISANLGAIEVMGMSANGAQYGLPTAHYFWIGAIPAMLFLGIVMMPFYYGSKVRSVPEFMRRRFGTGAHLTNGISFALAQILIAGANLYLLASVVNLLLGWPIWVSIVVAAVIVLAYTALGGLSAAIYNEVLQFFVIVAALVPLTIVGLYKVGGWDGLVDKVSGGPGGAAQLESWPGNQLTGFGSNFLSVLGLVFGLGFVLSFGYWTTNFVEVQRAMASKSMSAAQRTPIIGAFPKMLIPFIVIIPGMIAAVTVTELQGENKQALIDGGSAPSGATFNDALLLLMRDLLPNGVLGVAIAGLLASFMAGMAANLSSFNTVFTYDIWQAYIKKDKPDSYYLNMGRWVTAGATVLAIGTAAIASQYSNLMDYLQQLFSFFNAPLFATFILGMFWKRMTPAAAWIGLLSGTASAIVVFLLAETGVWDLPGQGASFIGAGAAFVVDIAVSVAVTMVTKPREASELTGLVYSLTPRESLKRSTTGEDAGWYRNPGLLAGIVLVLTIALNIAF
>NZ_CP009110.1|WP_156131621.1|1417847_1418030_-|hypothetical-protein
MRNVAESARYPAAMRLRLPSPVAGYGGVPTVDNFRGRTPVSLNDLVYGLINLISAIVNSM
>NZ_CP009110.1|WP_026153883.1|1417133_1417793_+|endonuclease-NucS
MRLVIARCQVDYAGRLTAHLPMATRLLLIKADGSVSVHSDDRAYKPLNWMSPPCWLIEDGDVWTVQNKAGEKLVITIEERIDEISHDLGAEPGLQKDGVEAHLQELLAEHITTLGEGYTLVRREYPTAIGPVDILARDADGGSVAVEIKRRGEIDGVEQLTRYLELLNRDPLLAPVQGVFAAQLIKPQARTLAEDRGIRCLTLDYDALRGTESDDLRLF
>NZ_CP009110.1|WP_017987346.1|1427923_1428487_-|TetR/AcrR-family-transcriptional-regulator
MAAPRPMRADARRNYERILVTAREAFREHGPDAPLDDIARRACVGAGTLYRHFPTRETLIEAVYRDDIERLSSAAHKLLEEHEPAEALELWMREQVAFVLHKRGLAATLKAAMDRDSETFAVCKTLINDAAAVLLSRAQESGAIRDDVRPRDLLLLGHGVGVAAEGNDETAERLLTVLLDGLRRPKP
>NZ_CP009110.1|WP_167345538.1|1428630_1430049_+|MFS-transporter
MPASGTAVAATAARPRPGVVLATLLTCQLMIVLDITVMNVALPRIQADLGFTAASLSWVMSSYTLVFGGLLLLGGRAGDLFGRKRMFAGGVLLFTAASLAGGLAGSAEWLIVARIAQGLGAAAAGPSTLALLTTTITEARARLRALALFSGMSSAGFAVGLILGGLLTEWLSWRAVLFINVPFGLVVAALAARFVVEPPRQRARLDLPGAVTGTVGVAALVYGFIRAAEAGWSDTLTLVSLIAGLVLLGAFLAVEVRTAEPLLPLRLFADRNRAAAYANFFLGPMAGMSMFFFLTQYLQDVRGMNALGTGFAFLPMALLVFALSRAIPRLLPRFGPKPVAIAGTLSMIAGVGWLTQLATGTPYLTGVLGPMVLMGLGMGLAFSPLNVIIMGSVPARDAGAAGGVLQTMQQTGATLGLAILVTIFGATTRTATGSPHDVLVTGMTTAFAGSVVIACLTFVVALTFRRDADRAA
>NZ_CP009110.1|WP_017987348.1|1430065_1430365_+|hypothetical-protein
MPRRNRPHRGRPDADRAGAAPGWAHAESGPDGDWLVRSVPGSQATKVYRCPGCDHEIQPGVPHVVAWPADELGSVADRRHWHRACWDARGRRGPTRKRF
>NZ_CP009110.1|WP_017987349.1|1430361_1430898_-|GNAT-family-N-acetyltransferase
MSVEWREIRTDRLLLRPLRPEDRDDVVEIQTDPGTNRYHPAPPGEEETEVKLTAWLEHWKAHGFGYLAVVPLATGAVAGIGGLQHLEFGGARLLNLYYRFRPGVWGRGYATEMARAVVEWAERELPEFPVQISVNIANEPSLRVAERLGFTVYTETFYDGAVSRHFRKLPKPEDARRA
>NZ_CP009110.1|WP_017987350.1|1430936_1431689_+|alpha/beta-fold-hydrolase
MADLPLVLLHAFPVDARMWNPVRGGLTTRHRLITPDQRGLGRTPLPGTDREPSLDDAARDVVALLDKLELEQVVLGGCSMGGYVSMAVLRAAPERVAGLVLIDTKATADAPEAAQARRDLALRAESEGVTGWLAEAMLPNVLSAETRETRPDVVETVRDLIDSQPPAGVAWAARAMADRPDSTALLAATDVPALVIVGEDDGLTPPHGAQAMAETLPSGELVVVPQAGHLTPLEAPAMVIEAILGWWPFA
>NZ_CP009110.1|WP_017987351.1|1431811_1432525_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MEKPGYLTALRRDGGRLAEAVRDLRAAVPACPGWDVAELVWHTGEVHWFWRQIASGAVPGPDDYREPPRPADDELVTWFAEGVDALAGALAALDPAEPRWTWAERKDAGFIQRRIAQETAVHCWDALSAAGRDEPVERELAVDGIDEFLRFFLPDAPPAGFRADVHLHATDGPGEWLVRPSGANWSVTGEHRKATAAVRGTASDLLLLLWRRKGPEEVEVLGDAGPLEEFVDVSQLN
>NZ_CP009110.1|WP_026153888.1|1433479_1435261_+|cytochrome-c-oxidase-subunit-I
MTAVAPQPIVTRPYPARQEAKGSLLLRLFRTTDHKQIGIMYLVTSFAFFMVGGAMAMLIRTELARPGQQFLSQEQYNQLFTMHGTIMLLLYATPILFGFANFVMPLQIGSPDVAFPRLNAFSYWLYLFGGIITVSGFLTPGGAADFGWFAYTPLSDAIHSPGIGADMWIAGLAVSGLGTILGAVNMVTTIVCLRAPGMTMFRMPIFTWNILVTSILVLLAFPILTAALMGLMADRHIGAHVFDPANGGVILWQHLFWFFGHPEVYIVALPFFGIVSEIIPVFSRKPIFGYKGLVFATLGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGQLSFETPMIFSVGFLVTFLFGGLTGILLAAPAIDFHVSDSYFVVAHFHYVLYGTIVFATFAGIYFWFPKITGRMLDEKLGKLHFWTTFLGFHATFLVQHWLGAEGMPRRYADYLASDGFTTLNTISTIGAYILGASTLPFIYNVFKSYRYGELVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMVERMHHEGEIGFFGKPKVHAGVKAPSQALTDAVIPGDHDKDNASEQ
>NZ_CP009110.1|WP_017987354.1|1435289_1436513_+|phosphoserine-phosphatase-SerB
MTPVLITTTGPDKPGVTSVLFAALTRHGVEMLDVEQVVIRGRLTLGVLVAVADDPEGLQESVEQAMASVAMHVDVRVGDEIGEDPFAPARQGSTHVAVILGRPLTARAFTDFAGRLAALGANIDAIRRIADYPVTGLEVHLSVAEDTEQADTELRAAVADVASAGGVDIAIERGGLARRAKRLIVFDVDSTLIQGEVIEMLAAHAGVEPKVREITEAAMRGELNFTESLERRVGLLAGLPESVLDEVGEQIQLTPGARTTVRTLKRLGFRCGVVSGGFTRIIQPIADQLGLDFVAANELEVVGGKLTGRVVGEIIDRAGKATALRRFADHYGIPLAQCVAVGDGANDIDMLKAAGMGVAFNAKPALREVADTALSHPYLDAVLFVLGVSRAEVEAADAADGLSLARP
>NZ_CP009110.1|WP_017987355.1|1436509_1437265_+|peptidyl-tRNA-hydrolase-PTH2
MSVLDPLAARYATWLGLPAEETALPEASPEQVRAMPVILRLEKAEPPSRTPLLEAAATAALAVCLDERAQPGREWHEPVHDWVAGHIRKVARRARGAHWVAAQDFPGVTVSVEGAEVRALVPGRVVDVPKEISRLQISGSDLPPDEPGPAPDDLPLLLLNPEVAMTVGKAAAQVGHGTMILASLLGDDELAAWAERGYACAVRTATVDQWKQLHPGDDPAAAWRERRVVAVRDAGFTEVDPGTVTVLAQWR
>NZ_CP009110.1|WP_017987356.1|1437284_1437704_+|osmotically-inducible-protein-C
MSLDVRREGEHEFVGRNERGASVRIGRKGAPGSFSPAELLQIAAAGCAAVTAEELITRRTDAPLRVAVTADRREGASELDAVHVLFDVDLSTLADDERDKVVAAVDRAIERLCTVSRTLKKGIPVTEEFAGGPEDGSRR

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Crispr_ID: NZ_CP009110_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_3

1598184-1598272

Orphan

Consensus_repeat	Method
CGCGCCGAGGCCGAGCGGATGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_3

>merge|NZ_CP009110|3|1598184-1598272|CRISPRCasFinder
CGCGCCGAGGCCGAGCGGATGATCGCCGCGGGCCAGGCCGAGTACCACAACCTCACCGAGCGGGCCCGCGCCGAGGCCGAGCGCATGAT

>NZ_CP009110|3|3|1598184-1598272|CRISPRCasFinder
CGCGCCGAGGCCGAGCGGATGAT	CGCCGCGGGCCAGGCCGAGTACCACAACCTCACCGAGCGGGCC
CGCGCCGAGGCCGAGCGCATGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017987525.1\|1605994_1607656_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|377138
NZ_CP009110.1\|WP_017987520.1\|1601507_1602053_+\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235156
NZ_CP009110.1\|WP_017987504.1\|1585184_1588559_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_CP009110.1\|WP_020486774.1\|1596758_1597241_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP009110.1\|WP_017987508.1\|1591785_1592865_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238082
NZ_CP009110.1\|WP_026153915.1\|1600625_1601489_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP009110.1\|WP_017987515.1\|1598632_1599220_+\|metal-binding-protein	unknown	unknown	gnl\|CDD\|224317
NZ_CP009110.1\|WP_038532830.1\|1602106_1603057_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NZ_CP009110.1\|WP_017987513.1\|1597324_1597747_+\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NZ_CP009110.1\|WP_017987522.1\|1603112_1603634_-\|membrane-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017987509.1\|1592868_1593804_-\|glutamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270408
NZ_CP009110.1\|WP_017987505.1\|1588602_1589406_+\|arginase-family-protein	unknown	unknown	gnl\|CDD\|212523
NZ_CP009110.1\|WP_017987510.1\|1593917_1596047_-\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226482
NZ_CP009110.1\|WP_017987507.1\|1590725_1591715_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP009110.1\|WP_017987523.1\|1603711_1605547_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NZ_CP009110.1\|WP_038532828.1\|1596177_1596738_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP009110.1\|WP_017987524.1\|1605893_1605995_+\|K(+)-transporting-ATPase-subunit-F	unknown	unknown	unknown
NZ_CP009110.1\|WP_026153914.1\|1599493_1600234_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP009110.1\|WP_026153912.1\|1589445_1590729_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP009110.1\|WP_017987516.1\|1599296_1599479_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017987525.1\|1605994_1607656_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NZ_CP009110.1\|WP_017987520.1\|1601507_1602053_+\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	8.232e-91
NZ_CP009110.1\|WP_017987504.1\|1585184_1588559_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_CP009110.1\|WP_020486774.1\|1596758_1597241_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.57631e-98
NZ_CP009110.1\|WP_017987508.1\|1591785_1592865_+\|hypothetical-protein	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	1.22897e-51
NZ_CP009110.1\|WP_026153915.1\|1600625_1601489_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.32122e-149
NZ_CP009110.1\|WP_017987515.1\|1598632_1599220_+\|metal-binding-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	2.59955e-31
NZ_CP009110.1\|WP_038532830.1\|1602106_1603057_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	2.60851e-37
NZ_CP009110.1\|WP_017987513.1\|1597324_1597747_+\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	1.99821e-46
NZ_CP009110.1\|WP_017987509.1\|1592868_1593804_-\|glutamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.28227e-84
NZ_CP009110.1\|WP_017987505.1\|1588602_1589406_+\|arginase-family-protein	gnl\|CDD\|212523	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family. This family includes arginase, also known as arginase-like amidino hydrolase family, as well as arginase-like proteins and are found in bacteria, archaea and eykaryotes, but does not include metazoan arginases. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid.	1.57156e-61
NZ_CP009110.1\|WP_017987510.1\|1593917_1596047_-\|ATP-binding-domain-containing-protein	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.23908e-67
NZ_CP009110.1\|WP_017987507.1\|1590725_1591715_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009110.1\|WP_017987523.1\|1603711_1605547_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	1.13503e-147
NZ_CP009110.1\|WP_038532828.1\|1596177_1596738_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	8.66199e-58
NZ_CP009110.1\|WP_026153914.1\|1599493_1600234_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	3.22138e-109
NZ_CP009110.1\|WP_026153912.1\|1589445_1590729_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	2.72264e-119
NZ_CP009110.1\|WP_017987516.1\|1599296_1599479_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	3.71377e-23

>NZ_CP009110.1|WP_017987513.1|1597324_1597747_+|ribonuclease
MTNITKSRVAGALLAVVLTLFTGFGLATPASAAPVSATQAECGDTSGFTVVALSSLPAEATDTYELIQRGGPYPYEQDGTVFQNREGLLPDCASGYYHEYTVETPGSDDRGARRIVTGSAGEYFYTGDHYASFDLVDVNS
>NZ_CP009110.1|WP_020486774.1|1596758_1597241_+|pantetheine-phosphate-adenylyltransferase
MRRAVCPGSYDPVTNGHLDIIERAAKLFDEVVVAVMINKSKKGMFTIDERLEMLREITAHLPNVRVDSWHGLLVDYCRQHDIAAIAKGLRSVSDFDYELQMAQMNRELSGVETLLMSNNPAYGFVSSSLVKEVATYGGDVKNLVPDVVFERLTAKLAERA
>NZ_CP009110.1|WP_038532828.1|1596177_1596738_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MAGAASGRRLKVPAQGTRPTSERVREALFNALEAAGELTDARVLDLYAGSGALGLEALSRGAADAVFVESDRRAVQVLKANVTALGLGGSVRSGPVETVLAQPADEPFHLVLADPPYSVGAEKIGAVLAVLAAGGWIAEDGLVIVERALRDGEPGWPAGFAPVRTSRYGDTALYWAEYVTLPRHGE
>NZ_CP009110.1|WP_017987510.1|1593917_1596047_-|ATP-binding-domain-containing-protein
MSEPRVRRAEIAIEQHHVDRVYTRLAELRAQAEAMRAKGYEIGHGAQREAVFEQASMLFERDMMVHHATQTLQTLDAEYEGLVFGRLDHTTGEKIYVGRLGIRDAEFDNLVTDWRAPAAAAFYQATAEEPMDVVRRRVIRCSGQTVLDVDDDVLIPDAVGDDMQVVGEGALMAELGRSRGDKMRDIVATIQKEQDEVIRAPWRGVTEITGGPGTGKTAVALHRAAYLLYRYRRQLGGAGVLVVGPSGVFTNYISRVLPSMGETNVELRALGAVLDGISTDRQDPAPLAAIKGSLRMRKVLTKAMRDTPPDVPDEMRIVYKGDVLKLNRKELEKVRRKVHGHGGPPNRSRVRAAEALLEALADRAEENARADGRTIERAELIHDLGERIDFHRFLVVWWPVLYPAEILRWLGDPRRLTKAARGVLTPAEVDLLAASFADREREWTVADVALLDELRVLVGPPPKRRRRAQQIELDAAPPERGSQGKPHRPEHYDEYSHIVVDESQDLSPMQWRMVGRRGKYASWTVVGDPVQSSWPDPDEAAQARTQVFGARTPVRRYTLRTNYRNSAEIFDLAARVVAGHAAEGELPRAVRTTGIEPEVRLVERGSVESAVQAAAKELLDAVEGTVGVVCAMDRVAEVGAWVRGQADERLKVVGSLDAKGLEYDAVVLVEPTELITESLTGRRVLYVALTRATQQLTVVASDDEWLPAE
>NZ_CP009110.1|WP_017987509.1|1592868_1593804_-|glutamate-ABC-transporter-substrate-binding-protein
MAGWVRAARRTAASIGLAAALLTTAVACTGDDNASSGGEVSAGQGVIGEAPVAGEADLAASPTAQAIKARGTLVIGGDENLPLLSQRNPITGSTDGFDATLGKMLAKYIIGRPNVNIVTTTPETREAMLKTGTVDAVIRIYTITAERAQRVAFAGPYLLSGQAIATLKGTTGIDDPGDLNGKTVLAVTGTTSVAAIQQQAPGAKITTFGTAEECVQALEQGKGDAYVHDLTVLAGEAQLDSKLQISGQPFTSEPYGIGLKLDDDSFKRFVNEWLRKIETAGLWQRAWQETLGTVVTGGVPSPPAIGSVPGS
>NZ_CP009110.1|WP_017987508.1|1591785_1592865_+|hypothetical-protein
MDLTVSTAVLAASTAEAVRLLPAPALGGVLLTAGADGLGVAAVAPDHALRLERPALVHTGGEALVPLRPLAETVRALDAEELRVSVEETRLVVRAPGGRFALPLLDRGLHPGIAAPPQAAGSVAGPTLRGALEAVASAASREAALPIFTGVRMWTEGGVLTLLATDRYRMALATLDWTGGRLDALAPAAALSALARGLGAAPSVGLGADSDRLGLSWGPDSFATALLGVPFPDERARELVRAQPSGAVELDAEALVAALRRASPYAGPRGTVTLAGWDGELRVISSDPHSGESEQVVKASVSGGRMSATYQARYLLDALRPFAGRTVRIEHQEGLRPTVFTAPPEGGAAMTCVVVPMRV
>NZ_CP009110.1|WP_017987507.1|1590725_1591715_-|LLM-class-flavin-dependent-oxidoreductase
MKPLSDVALSVLDLSPIPSGADARTALRGSVELARHAERLGYRRFWVAEHHNMPGVASSATTVLMSHVAGATETIRVGSGGIMLPNHAPLVVAEQFGMLEAFHPGRIDLGIGRAPGTDQRTALALRRSPQALGADDFPQQLTELMGYFDGEGTVRAVPRYKPPVWLLGSSGFSARLAGSLGLPFAFAHHFSARNTIPAVELYRESFRPSEALSEPYVMLGAAVICADTDEQARWLAGPSGLQFLQLRRGNPIPLPSPEEAAEYPYSDIDRHFVDERLGTTIHGSPSTVRKGLETLVADTGADEIMITTMVHGEADRLRSYELVAGLARD
>NZ_CP009110.1|WP_026153912.1|1589445_1590729_+|class-I-SAM-dependent-methyltransferase
MGSAGGVAGAVGELLHTALGQVVPIRIRCWDGSETGPPDAPVLHIRHRRALRRLLWAPNEVGVARAHVAGELDVEGPFVAALERLHDLVYDVDFDVDLTWSVRRDLAKTALKLGIVGFPPKPPPEEIKLAGRMHSRRRDAAAVSHHYDVGNDFYALVLGPSMTYSCAVWAKPETTLEEAQTAKVDLVARKLGLREGMRVLDVGCGWGTFVIHAAKEYGAHAVGVTLSQAQADFARKRVAEEGLSDLVEIRVQDYREVSDGPFDAISSIGMAEHVGASMLPVYAKSLFELLRPEGRLLNHAISRHPSVPPRNQKTSFIDRYVFPDGELEPVSVMAGALEEAGFEVRDVEALREHYGRTLRAWVANLEANWDEAVRLSGAGRARVWRLYMAACALSFESGAIGVNQVLAVKPTARGGSGMPPVRTAWLS
>NZ_CP009110.1|WP_017987505.1|1588602_1589406_+|arginase-family-protein
MLIQAVPQWQGARTSRAGDLPAGCRALSAFAAEVLDVPVREVRLATGGTPVADGIANREALLDNKKRHADALADGPVLTVGGDCAAGLVPVAAARARHGKRFGVLWFDAHADLNTPASSPSGAFHGMVLRSLLGDGDPAFAAAPALEPGRAVLVGARAFDPAERDEIEAGRARLVTGEPSRIVAEVRDAGIERLYVHVDLDVLDPSEFAGMDYPEPDGMSVTQLVLGLRALAEFEVVGAGLTECVTGKREELAILSPVLHTIGELLR
>NZ_CP009110.1|WP_017987504.1|1585184_1588559_+|pyruvate-carboxylase
MFRKVLVANRGEIAIRAFRAGYELGAGTVAVFPHEDRNSLHRLKADEAYEIGEPGHPVRAYLDVEEIVGAARKAGADAVYPGYGFLSENPDLARACEEAGITFVGPSAEILELTGNKARAVAAARDAGVPVLGSSQPSTDIDELTAAAEEIGFPVFVKAVAGGGGRGMRRVNDPAHLRESVEAAMREAESAFGDPTVFLEKAVVDPRHIEVQILADGAGNVIHLFERDCSVQRRHQKVIELAPAPNLDPELRDRICNDAVAFARKIGYRNAGTVEFLLDRDGNHVFIEMNPRIQVEHTVTEEVTDVDLVQSQLRIAAGETLADLGLSQEKVYLRGAAMQCRITTEDPANGFRPDTGMISAYRSPGGSGIRLDGGTAFAGTEISAHFDSMLVKLTCRGRDFKTAVGRARRALAEFRIRGVSTNIPFLQAVLDDPDFAAGRVTTSFIEERPHLLTARHSADRGTRLLTYLADVTVNKPHGERPRLIDPTTKLPSLPSGEAAAGSKQKLTELGPEGFARWLRESPTLGVTDTTFRDAHQSLLATRVRTKDLLAVAPVVAHTLPQLLSLECWGGATYDVALRFLAEDPWERLAQLREAVPNICLQMLLRGRNTVGYTPYPTEVTNAFVEEATNTGIDIFRIFDAFNDVEQMRPAIEAVRETGKAVAEVALCYTSDLSDPGEKLYTLDYYLKLAEQIVGAGAHVLAIKDMAGLLRAPAAEKLVSALRKEFDLPVHIHTHDTAGGQLGTYLAAIGAGADAVDGAVASMAGTTSQPSLSAIVAATDHSARPSGLSLRAVGDLEPYWEIVRKIYAPFEAGLASPTGRVYDHEIPGGQLSNLRTQAKALGLGDRFEEIEAMYAAADKILGHLVKVTPSSKVVGDLALHLVGAGVEPEKFEAEPNRYDIPDSVIGFLRGELGDPPGGWPEPFRTKALEGRAEPKPVAELSAEDREGLAKDRRATLNRLLFPGPAKEFEEHRRAYGDTSVLPSKDFFYGLRPGEEYAVDLEPGVRLLFELEAIGEADERGMRTVMATLNGQLRPIQVRDRSVAADLPAAEKADKSDPKQVAAPFAGVVTLSVAEGDEVAAGATVATIEAMKMEAAITASESGKVARLAINSVQQVEGGDLLIVLE
>NZ_CP009110.1|WP_017987515.1|1598632_1599220_+|metal-binding-protein
MSQQNDTPDVRNPWIVDTRELGRRAGLSRTIQRTAPTAVEWGVPDVIVVPKGAEVELDLLLESVVEGVLVTGSAAVRTTGACSRCLDPIDDEAEVELTELFAYPDSTTDETTDEDEVMRLVDDRIDLEPLVRDAVVLALPQVPLCREDCQGLCPDCGGKWADLEPGHGHETIDPRWAALVERFDDSSSGGPGRQA
>NZ_CP009110.1|WP_017987516.1|1599296_1599479_+|50S-ribosomal-protein-L32
MAVPKRKMSRSNTRHRRAQWKATPVQLVPCQNRACRQPKPQHVACPTCGQYDGRQVVEPA
>NZ_CP009110.1|WP_026153914.1|1599493_1600234_+|ribonuclease-III
MGGRSRSGGPAADPKPLLEALGVELDAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRAHPELPEGQLAKLRASVVNMHALAGVARGLGPGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAAYLAHGIDAARALVHRLFDALLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAETAWRALSEELKPEGSE
>NZ_CP009110.1|WP_026153915.1|1600625_1601489_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLQAHVAGRGIARVEVLHPRAIRRHELGPEDFTGRLAGARVEAARRRGKYLWLELSDKEAILAHLGMSGQMLVQPEGAPDEKHLRVRIRFDDGGPELRFVDQRTFGGLALADLVTSDGTLLPAPIAHIARDPMDPAFDPAQAVKALRSRRTEIKRALLDQTLVSGVGNIYADESLWRARLHWARSTEKLTRAQGAAVLEAATEVMTEALQAGGTSFDALYVNVNGQSGYFDRSLNVYGQGDRPCRRCGTPIRREPFMNRSSYFCPRCQPRPRRSS
>NZ_CP009110.1|WP_017987520.1|1601507_1602053_+|isopentenyl-diphosphate-Delta-isomerase
MAQEELVVLLDERFDPVGTAPKRTVHDAHTPLHLAFSCYVFDRAGRVLLTRRAIGKKTWPGVWTNSFCGHPGPGEDMAEAIARRAKQELGLEVTGLRKVLPDFRYTAMDAGGVVENEFCPVWVAEADADPLPEPDEVCEWRWSAWTDLVESMSRTPFVFSPWSQLQVPRLAETLSAGATQR
>NZ_CP009110.1|WP_038532830.1|1602106_1603057_+|alpha/beta-fold-hydrolase
MGPDTFDLRHRTIHGYRRAYRMAGSGPALLFVHGIGDDSSTWLDVLASLTRDYTVIAPDLLGHGGSDKPRADYSVAAYACGMRDLLATLDVDRVTVIGHSLGGGVAMQFAYQFPERCERLALVSSGGVGAGVHPLLRLAAAPGAELVLPLLGTLPVREALRRFQSVLKGGGGFGLGEDLDYVVGKYVRLAESTSRQAFLRTLRAVVDWRGQVVNMLDRCYLTEGIPTLLVWGTRDHVVPSAHALVAHGAMPGNRLEIFEGAGHFPHHTEPQRFLAVPRDFLTTTAPAQHDVRRWRHLLRTGRRTNPGPELGVSSGT
>NZ_CP009110.1|WP_017987522.1|1603112_1603634_-|membrane-protein
MTQAFTQTAFTNARTSPQLPTLPTGWPIGSYESYEEAQRAVDHLADNDFPVADVTIVGVEPMLVERVAGKLSWGRVLGGAATSGAWFGVFVGLLLTLFTPGAGLLPILFGLVAGVAFSMVFAAISYGATRGKRDFVSQTQLVARRYDVLSQPRTAEKGRELLANLAARTHVFN
>NZ_CP009110.1|WP_017987523.1|1603711_1605547_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGWVSFETDLTQRREVLDAMTGTMACRGPDDSGTWLAPHAALGHRRLAIIDLPGGRQPMSVTTPAGEVAMVYSGEAYNFTELRRELEGKGHTFRTDSDTEVVLHGYLEWGESVADHLNGMYAFAIWDARDEKLVMIRDRMGIKPFYYYPTRDGVLFGSEPKAILANPAAKRIVDADGLRELFSFTKQPGWSLWFGMSEVEPGTIVRVDRDGAHTRTYWKLEAREHTDDQETTVARVRELMTDIVHRQLVADVPRCVLLSGGLDSSAITGLAAARLREEGEQLRTFSVDFVGQEENFKPDEMRDTPDSPFIRDVAKLVGSAHQDVVLDPAALTDPAVRRAVLTARDIPAGLGDMDTSLYLLFKAIRAESTVALSGESADEVFGGYRWFHDDTARNAGTFPWLAFRTGVQDGGNLLRPDVSRKLDLDGYIADQYRTALAQVEHLDGVSADERRMREVCHLHLTRMVRALLDRKDRASMAVGLEVRVPFCDHRLVEYVYNTPWSLKTFDGREKSLLRHATKHVLPQSVVDRVKSPYPSTQDPGYAAALQQQAKEVLATPGDPVFELASREWVTDAVSQDPATMTSLTRHGLDRLLDLHHWFDIYRPELRV
>NZ_CP009110.1|WP_017987524.1|1605893_1605995_+|K(+)-transporting-ATPase-subunit-F
MSGAGVVANVVGGVLALGLIVYLFIALTKPERF
>NZ_CP009110.1|WP_017987525.1|1605994_1607656_+|potassium-transporting-ATPase-subunit-KdpA
MSDLASGLVTVGILVAALALVHKPLGDYMARVFTSEKHLKLERGLYRAFRVDPSSQQRWTTYALGVLGFSLVSIVFLYLLQRLQSVLPLSLGRGAVDPGVAFNTAVSFVTNTNWQSYVPETTMGHLVQMAGLTVQNFLSAAVGLSVAMALVRGFTRSRTDRLGNFWVDLTRGTVRILLPLSVVFAIVLIAFGVTQSLRAGVPVTGLDGTLSAISMAPTASQEVIKELGTNGGGIFNANSAHPFENPNVWTNLIEIFLILVIPVSLTRTFGRLVGNPKQGYVLLSVMGLLWTFVLAVTWWAESHPNGPAALLAGANLEGKEQRFGIGASTLFATSTTGTSTGAVNSLHDSYSGLGGGMTLLHMLFGEVSPGGVGTGLYGILVLAIIAMFLAGLMVGRTPEYLGKKLGKREVTAAAIAMLAMPAVVLLGAGAALLMPGTTGALGNSGAHGLSEVLYAYASTGNNNGSAFAGITVTDGWFQSSLSVAMLIGRFVPIIAVLCLAGSLAAQKKVPETAGTLPTTGPLFGSVLAGTVLLVAALTFVPALALGPIAEAMA

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Crispr_ID: NZ_CP009110_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_4

2325028-2325113

Orphan

Consensus_repeat	Method
CTTCCTCGCCGCGCCGCAGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_4

>merge|NZ_CP009110|4|2325028-2325113|CRISPRCasFinder
CTTCCTCGCCGCGCCGCAGCGGTACCTGCGGCACTTGCTCGCCGAGGGGTGAGGTTTGGACGCCTTCCTCGCCGCGCCGCGGCGGT

>NZ_CP009110|4|4|2325028-2325113|CRISPRCasFinder
CTTCCTCGCCGCGCCGCAGCGGT	ACCTGCGGCACTTGCTCGCCGAGGGGTGAGGTTTGGACGC
CTTCCTCGCCGCGCCGCGGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017981536.1\|2322015_2323323_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP009110.1\|WP_017981540.1\|2326842_2327967_+\|NDMA-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|274905
NZ_CP009110.1\|WP_026153010.1\|2332548_2333361_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP009110.1\|WP_017981545.1\|2333384_2334158_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP009110.1\|WP_017981525.1\|2313071_2313443_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017981549.1\|2337064_2337925_+\|transketolase	unknown	unknown	gnl\|CDD\|238970
NZ_CP009110.1\|WP_017981548.1\|2336330_2337014_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP009110.1\|WP_017981546.1\|2334172_2335846_+\|dihydroxyacetone-kinase-family-protein	unknown	unknown	gnl\|CDD\|237723
NZ_CP009110.1\|WP_017981547.1\|2335842_2336307_+\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|376799
NZ_CP009110.1\|WP_017981543.1\|2331017_2332361_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP009110.1\|WP_017981527.1\|2315308_2316883_-\|tannase/feruloyl-esterase-family-alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|284851
NZ_CP009110.1\|WP_017981534.1\|2320667_2320991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017981535.1\|2320999_2321905_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017981539.1\|2325362_2326817_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143410
NZ_CP009110.1\|WP_017981526.1\|2313439_2313856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017981533.1\|2319628_2320651_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP009110.1\|WP_026153007.1\|2311646_2312852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017981537.1\|2323396_2324326_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236612
NZ_CP009110.1\|WP_017981528.1\|2316988_2318065_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549
NZ_CP009110.1\|WP_017981542.1\|2330766_2330958_-\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|179355

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017981536.1\|2322015_2323323_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.03894e-147
NZ_CP009110.1\|WP_017981540.1\|2326842_2327967_+\|NDMA-dependent-alcohol-dehydrogenase	gnl\|CDD\|274905	TIGR03989, Zn-dependent_alcohol_dehydrogenase_class_III, NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family. This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009110.1\|WP_026153010.1\|2332548_2333361_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	8.44291e-28
NZ_CP009110.1\|WP_017981549.1\|2337064_2337925_+\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	4.2401e-109
NZ_CP009110.1\|WP_017981548.1\|2336330_2337014_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.36028e-35
NZ_CP009110.1\|WP_017981546.1\|2334172_2335846_+\|dihydroxyacetone-kinase-family-protein	gnl\|CDD\|237723	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.	0
NZ_CP009110.1\|WP_017981547.1\|2335842_2336307_+\|ribose-5-phosphate-isomerase	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	2.10412e-52
NZ_CP009110.1\|WP_017981545.1\|2333384_2334158_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.35871e-74
NZ_CP009110.1\|WP_017981527.1\|2315308_2316883_-\|tannase/feruloyl-esterase-family-alpha/beta-hydrolase	gnl\|CDD\|284851	pfam07519, Tannase, Tannase and feruloyl esterase. This family includes fungal tannase and feruloyl esterase. It also includes several bacterial homologs of unknown function.	1.48083e-109
NZ_CP009110.1\|WP_017981539.1\|2325362_2326817_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
NZ_CP009110.1\|WP_017981533.1\|2319628_2320651_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.4821e-84
NZ_CP009110.1\|WP_017981543.1\|2331017_2332361_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.09103e-148
NZ_CP009110.1\|WP_017981537.1\|2323396_2324326_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	4.26173e-45
NZ_CP009110.1\|WP_017981528.1\|2316988_2318065_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	2.25336e-139
NZ_CP009110.1\|WP_017981542.1\|2330766_2330958_-\|4-oxalocrotonate-tautomerase	gnl\|CDD\|179355	PRK01964, PRK01964, 4-oxalocrotonate tautomerase; Provisional.	1.97384e-17

>NZ_CP009110.1|WP_017981537.1|2323396_2324326_+|helix-turn-helix-domain-containing-protein
MGAFPMTLDAGAATSLESWRDVLASAFVPLDVVSVGNRFHGRVHARPMADLQVSVVSSTRQVTRRTRGLIRRRAGDLYKVGLQLRGHGVVQQDGRTARLAPGDLTVYDTNRPYELVFDDDFEMLVLLVPRRRLKPRAPRVDDLTAVTIPGSAGSGALTSALLRGLDPRVARPGPEAGFLSDAAVDMLAACFAAQAEPPADTVVTAAQRYIDEHLSDPALSPSEVAAAVHVSLRQLQKLFERRGATITGWIRDRRLDRCWHDLADPALATRPVAAIAASWGLVDAAQFSRTFRARYGRTPREHRAQLVAG
>NZ_CP009110.1|WP_017981536.1|2322015_2323323_+|MHS-family-MFS-transporter
MRLRISRATVGSTVGTALEWYDFSLYGTAAALVLPQVFFPSGDPVVATLSSLATFAVGFFARPVGGVIIGILGDRVGRRTMLFVTLMVMAVASTLIGVLPSYATAGVFAPVALVLLRVVQGLGAGGEYAGAMLLSAEHAETRARGINASAPTLGNAVGSLVATGVFFLTSAVMSDAAFTGWGWRIPFLLSCLVGVAGVIVRLKVPDSPEFERAKEEGRATRAPLRTLFATSGRKILPGMLISVAPNVISYLPSVYALSYLTKEVGAAAWVGLLGIVIANALKVVTVPTAGWLCDRFGRRPVMMTGATAAALLFYPFFFLLDTGTPVVIWAALVLLYTLCNDLTLASQATMMFELFPVGYRYTGVTFTREIAGAVVGGCIPFVAAALTSASGGQTWPIALVCGLLCLLSVLGARFIAEPEHLRRRDGARVAAPAGG
>NZ_CP009110.1|WP_017981535.1|2320999_2321905_-|hypothetical-protein
MNVNETALSKYNPLSRVLCFDRFDSTTHGWTELLGNYDGRGDLDTVDDHMRDFRPPQLSSCTFFDVGTHGTLSGNYALKLATRPYPGHTATGIRRLTMAGRGRVRIETHFAFKAEATVGHEAPASVPWDGNRHPSESQFGAFTVATDICSDGGLRYHNVIRYQNTNLDGEMTNRWMYPVVPEPTPRDHQEGKFALPYAADFTAPDPDDWRTFGEPLEMCVNEVPTKINWHYLRWDIDTSTRSNVELQLNDRVMDMRDVPVPPYPDRYGTLDNLLNFYFSVRTHCGVRNFLFLDSVLISVDW
>NZ_CP009110.1|WP_017981534.1|2320667_2320991_-|hypothetical-protein
MRSTTTAVLERNTVVREDFATEPYELPWAAEARFFVQALDLDGPLDFRTEISPDGLHWCPLDDVEHRIDAPGLITWAVSGFGQWLRVRCAVGPGTTGKLRIYLVGKG
>NZ_CP009110.1|WP_017981533.1|2319628_2320651_-|LacI-family-DNA-binding-transcriptional-regulator
MVRARRVTLRDVADRVGLSANTVSRALSGKDQVSEATREMIVAEARRLGYVPNSHARSLVSGTTMVLALVITNPSNPFYAALISAVERQCRVAGYSVLLLVTEENEDNEERAVQQLLRFGVDGVLAVPIQHRPGVWAELSAAGLPVVLLSRDIPELGFDFVGIDVEQAVADAVSRVAGPGRAWLFEEDLEISTVAQRIAGFRRALGGDSLVLKVPGHRTRDAALPWRPDDAHRLAAGLISREHHPELVVTGNDYFALGVYKAVRECGLTVGEDVRVLGYGDHPFAAYLEPGLSTIRLPADEVGSAGVELLLRRVADPDRPRETVALSAELVERGSARVVR
>NZ_CP009110.1|WP_017981528.1|2316988_2318065_-|isocitrate/isopropylmalate-dehydrogenase-family-protein
MTQDTYRLGVMDGDGIGPEIVPAAVRVVDAAAQELDIEWVPLPVGRTAIDEFGTPLPESTVEALSGVDGWLLGPHDNASYPEPHRSRLNPSGFLRKHFDLFANIRPARAFDGARALVPGTDLVIVRENTQGFYADRNTFAGAGEFMPTPDVAIAHAIFTRESVERIAHEAFRLARQRRRRVTVVHKANVLRLTSGLFLDVCRDVARQYPDVEVGDAHIDAMAAALVRRAPEFDVIVTENMFGDILSDLTAEIAGSLGIAPSVNVSATRGMAQATHGSAPDIAGRDVANPVAMILSAAMLLEWLGERHDDPAPARVAGTIRDAVADTIRGGVTTPDLGGSAGTRAFTDAVVVSIKHMTR
>NZ_CP009110.1|WP_017981527.1|2315308_2316883_-|tannase/feruloyl-esterase-family-alpha/beta-hydrolase
MLVPALAAAALAAPAQADPAASCAWLAGLAIPAAAIGLPTSGGTVTSAQDAGTYCQMDAALHPVDPAAPDIRMRVALPAKWNGKALMFGGGGYNGTIPNVAGNVPFGPVGGPTPLARGYATFASDSGHQASPTHGPATSLDGSFGVNDEAVRNFSGDALRKTRDAAMFLIAERYSARPSHSYFAGGSTGGREALAVAQRWPADFDGVISAYPAWNAASLDLFFGYEAQVLSQPGAFPNPAKQTLLYRSVVQACDGLDGLRDGVISNEPGCRFDPRSLRCPDGADTGDTCLSDAQIRAVKAISAPLRWNYHLNSGERGYPGFPFLSGAAMTTPLLGMGTVAPANPMPTTAGYGVQFWDQWVRYFVTRDPGFDALTVDPRNPGRWRERIAELAGPQDVNNPDLSRFARGGGKLLLLHGTADELVSHRSTVDYFERVERSLGKRATASFARFYLIPGANHANVSAAFPAAWDSLTALENWAEHGEPPLDPAVTDATTGRARPLCEYPAWPRYRSGDPAAATSFTCTG
>NZ_CP009110.1|WP_017981526.1|2313439_2313856_-|hypothetical-protein
MDSPAAGLTELSRGLAGYLRAVAEAVGVPAEATSFELSDTATAYLGLTRRWPTRPGEDLMLVWSEGSGWAVAVETGPGETPMVLAWFAGDDVVPEPADVARFVTGVIAADRSDAPRPVFAVDVGRNELAARLARYVEP
>NZ_CP009110.1|WP_017981525.1|2313071_2313443_+|hypothetical-protein
MSSGPHVRTTTPKAGMAAGPPRLKLRASQNPSVPTPGYVDGAWWPRSRDLSAELPALRAVLAARLGPIDRIAYHATAWDPSVRHFDRRGSLVPVVGYRRQDSDTVDVTTSAGDRLVLVVVPPA
>NZ_CP009110.1|WP_026153007.1|2311646_2312852_+|hypothetical-protein
MTGSGKPLLYPEERALDDAAWEQGLTPSRIFAILLPVWQVEVRATVTEGRPYELIDRFLERGILEGGLTSVAELSRFFALDEPLVDRAVRVLSAIGHVAVRDGRLALTELALRSQRDQICYVTTREDRRKMYFDAFSSRPFSRGYYDAGTVTFLTADKAAAATAAHPYPRFLKLTSTHGFRRDALRDLEGRSDRDHYNLPFRVEQPESLGEECVYLPVYLVRAADARRAPRYLVYSQITDTADPELSDLCGSLPEITGLVESETLAVQPGRHDQRISDWLADKGVHGVRAVQTERGFWQVTLPATAFRPSGRVPLSRIGSFVPLGTGVLGVWCEDERIREDAFLRRIDAYVTASRTDVGDWVVRLARRLGLALGTVAEVSALARRAGMGSLAAVLAEHAGS
>NZ_CP009110.1|WP_017981539.1|2325362_2326817_+|aldehyde-dehydrogenase-family-protein
MTTTETFPSQLFLAGQWRDGTGGTFADLNPATEEKLVDVAAASAQDVDAAVKAARAQLSGEWAALPGSQRGLILNRVADLIDRDADLLARLEALDIGKPVGQPTVLDMPNAARTFRHFAGWTDKITGQVIPTDGYLGRPTHSYTRREPVGVIAAIIPWNTPLMITAWKLAPALAAGNTVVVKPPEDAPLSILHLAKLLKEAGLPDGVVSVLPGLGEVTGQALVDHPDVDKISFTGSPEVGRHVGVAAAQSFKRITLELGGKSPQIILADADLEAAIGGTAMGLFFNQGQVCAAGTRVLVHRSLYSDVVDALAGAARQQVLGDPLDPATTMGALVNKKQQDRVLGYIEKGRAEGARLVAGGARPERPGYFVQPTIFADVDNDMTIAREEIFGPVGSVIPFDDPADAVRIANDTTYGLAATIWTRDVTVAHTLAAQVRAGAVGVNGWAPIDAALPWGGMKASGVGRELGWSGILANTEEKVVTVVL
>NZ_CP009110.1|WP_017981540.1|2326842_2327967_+|NDMA-dependent-alcohol-dehydrogenase
MPITTKVSLVRQAPGTYETATVELDDPRQGEVTVKLAASGLCHSDDHVATGDVPVAVYPYVGGHEGAGVVTAVGPNTPGYEVGDHVVFSFLPACGKCEFCAQGLSNLCDLGASLLTGARADDPTSFRMTENGNPVGQQCGISTFAEYTTASVDSVVKIGKDIPLKAAALVGCGVPTGWGSAVNSANIKPGAVVIVMGIGGIGANALQGAAHAGAKTIIAVDPVQFKRDKAKVFGATHAFATIEEAADFARSLTNGQGADATIVTIGVVRGDHVGQALASIRKAGTVVLTGLGNITEAGAPIALGDLTLMQKRLQGSLFGESNPRRDIPNLLRMYQAGQLKLEELITREYTLDEVAQAYDDMHAGRNIRGLVVFD
>NZ_CP009110.1|WP_017981542.1|2330766_2330958_-|4-oxalocrotonate-tautomerase
MPLIQVSVREGRDPARIRALITALTEATVSALDAPKESVRVIVTEVPGSHWAAGDVTLDEKDA
>NZ_CP009110.1|WP_017981543.1|2331017_2332361_-|MHS-family-MFS-transporter
MRSEALTMRGPVHGTPDARRVAWGSTAGAVIESYDFIGFGTAAALYFGHAFFPNASPVIGTLSAFATLGVGFGARPIGGIIGGHLGDKIGRKPVLVASLIVMGLATFAIGLLPTYETAGVLAPALLVTVRIIQGVAYGAEWGGAILMTYEHAPWRRKGAFTGIVQAGFPIGLLLANLVFLVSVNLSGDWAWRVPFLASLILVIVGLVVRAKVPESPVFEDVRDSGDIVKAPIVQVLREDWRNVLRGIGLRIAETAGYAVAITYMISYLKSEELATSGETIMALCIASAVGIGATIAWGGLTDRIGRRPVYLWVTLFGALWAIPMFLLVNTASLIAIVVTVLVSYAVCQNALAGAQGAWFPELFQAKTRSSGASLAYQISAMISGGTPFVTTLLFLWLSWLGPALLFLAYSALGLVSALLTRETWGRAERETAARATAETPAEPVRLS
>NZ_CP009110.1|WP_026153010.1|2332548_2333361_+|sugar-phosphate-isomerase/epimerase
MERTGWPGCSTISFRHLPLAVALAVIAECGFGETDLGALPGVCDHVPYDLTDDAVRAVAAEVAASGLRVRSVNGDIGDLNRPHDEDERAAHLRRLLDLTAACGADALVLPCGAQSHEPVATLDEDLDLVAVQLHRAAEAAARHGVAIWVEAPHYHRLCWNTELAARLADRLDPAVGLVLDTSHIVASGGDPAAYAERFAGRVAHVHLRDATPGHINHSIGNGVVDFAATFVALRATGYQGASSLELETRDVTDDERPAAAVKAAAYIAGL
>NZ_CP009110.1|WP_017981545.1|2333384_2334158_+|SDR-family-oxidoreductase
MPDTQRTAVITGAGAPRGIGKATAARLARDGWAVAVLDLNEPAAKEAADEIAAGTGAPVFAHGVDVADEPSVLAAYRAVRAEVDAGRLPTVGVVVNIAGITSPVPFLETTLELWNKVMAVNATGTYLVTKAFLPDLIKAGWGRIVNMSSVSAQQGGGVFGRTPYSSAKAAILGFTKALARELGDAGVTVNAVAPGAVDTDIRVGTTEELEAAIVKSIPIGRQATVADVAGVIAWLTSEDAGYLQGTTIDINGGSFLH
>NZ_CP009110.1|WP_017981546.1|2334172_2335846_+|dihydroxyacetone-kinase-family-protein
MTYLSNDPATFAEDALAGFCELHADTVRRVPGGAVRRSRPSRPKVAVLPGGGSGHYPAFYGVIGPGLADGAVSGNLFTSPSAQDAVSVARAAHSGAGVVFSYGNYAGDVMNFGLATERLRAQGIRAENVVVTDDIASAERPAERRGIAGDFTVFKVMGAAAEEGMDLDEVVRVGRKANDATRTIGAAFAGCTFPGADAPLFTVPDGHMGLGLGIHGEPGLRDVPRTAARELAADFVRRVLAEKPAGAGDRIAVLLNGLGSVKHEELFVLWADVSRLLRESGHTLVLPEVGELVTSLDMAGVSLTVTWLDDELERLWTAPAWTPAFRRGAIAADSGEEAVAEVTDDAPRFAEASAESRQVAGAVLDGLRAVRKALREAESELGAIDAVAGDGDHGRGMVRGIDAAVTAAEAAWHQGAGAGDVLAAAGDEWAARAGGTSGVLWGAGLRAAGEVIGDGVIDAVAAVDAFAERVMSLGGAEPGDKTLVDALVPFRERLASGTWAQAAAAAEDAARVTADLVPRKGRARPLAERSVGTPDPGAVSLALIARAVSEYLREGTR
>NZ_CP009110.1|WP_017981547.1|2335842_2336307_+|ribose-5-phosphate-isomerase
MNYRIVVGCDDAGLDYKEQLAADLRADPRVAEVVDLGVHRGADDVHRPYPEIGLAAGEAIRDGKADRAVLVCGTGIGMALSANKVPGVRATTAHDSFSVERSILSNNCQVLTLGQRVVGLELARRLVAEWLGYTFDERSASAAKVSLISEYERC
>NZ_CP009110.1|WP_017981548.1|2336330_2337014_+|GntR-family-transcriptional-regulator
MVKEPNRNLRQMAVDTLRQAITTGEFPPGSHLGEVQVSEQLGISRGTLREALRQLQQEGLVEYGERGRVTVRLISEKDIINTFTVRAALEALAGETLAASYYREEHCRRLRAAVDRMARATRVSLEAQIEADLAFHELLVELTDNDALVRSWKLLEGPIRMCIMYRGLERALSNMSPGRHLEIVTAIESGDPVKTQSVISEHMVATAQALLFGTVRTRPRIEITGEN
>NZ_CP009110.1|WP_017981549.1|2337064_2337925_+|transketolase
MTASIAPSATRADRVAAAAHRMRHHILNMGEAQGQGYVGQALGAADLLATVYTDQLRLRPADPEWPERDRFLLSTGHYAIGLYAALAEAGVVPVEELETYGSDDSRLPMSGMATYTPGMEISGGSLGHGLTVAVGMALGLRLRGSASRVFNFLSDGELDEGSTWEAAMGAAHHWLGLLTAMVDINALQADGSTAGVLRTEPVVDKWAAAGWFVRRVDGNDIPALLAAFDEIAERARPDGQPSVLLCDTRIGRSVPLLETREKAHFMRIDEHEWDICRGQLDEGARA

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Crispr_ID: NZ_CP009110_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_5

2994712-2994806

Orphan

Consensus_repeat	Method
GTTTCCGACGAGGTGCTCGAAGAGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_5

>merge|NZ_CP009110|5|2994712-2994806|CRISPRCasFinder
GTTTCCGACGAGGTGCTCGAAGAGGTCAGCGCGTGACGGGAACGTGTACGCCCTGCGTCGAATTCCATGTTTCCGACGAGGTGTTCGAAGAGGTC

>NZ_CP009110|5|5|2994712-2994806|CRISPRCasFinder
GTTTCCGACGAGGTGCTCGAAGAGGTC	AGCGCGTGACGGGAACGTGTACGCCCTGCGTCGAATTCCAT
GTTTCCGACGAGGTGTTCGAAGAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_081617757.1\|2995538_2996168_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP009110.1\|WP_017987958.1\|2993362_2993998_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	unknown	unknown	gnl\|CDD\|237411
NZ_CP009110.1\|WP_026153975.1\|2990028_2992152_-\|elongation-factor-G-like-protein-EF-G2	unknown	unknown	gnl\|CDD\|237186
NZ_CP009110.1\|WP_017987960.1\|2994923_2995442_+\|DUF4262-domain-containing-protein	unknown	unknown	gnl\|CDD\|379457
NZ_CP009110.1\|WP_017987962.1\|2996164_2996758_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP009110.1\|WP_017987950.1\|2985944_2986553_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP009110.1\|WP_017987952.1\|2987463_2988603_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009110.1\|WP_017987963.1\|2996785_2997829_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP009110.1\|WP_017987957.1\|2992360_2993275_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NZ_CP009110.1\|WP_017987967.1\|3001269_3001788_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP009110.1\|WP_017987951.1\|2986552_2987467_+\|phosphatidylinositol-mannoside-acyltransferase	unknown	unknown	gnl\|CDD\|236131
NZ_CP009110.1\|WP_017987964.1\|2997926_2998322_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235636
NZ_CP009110.1\|WP_017987966.1\|3000038_3001268_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP009110.1\|WP_017987953.1\|2988599_2989094_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP009110.1\|WP_026153974.1\|2989103_2989610_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_CP009110.1\|WP_017987955.1\|2989676_2989985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_026153976.1\|3004593_3005367_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235705
NZ_CP009110.1\|WP_017987965.1\|2998462_3000037_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP009110.1\|WP_017987949.1\|2985293_2985800_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009110.1\|WP_017987968.1\|3001894_3004225_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_081617757.1\|2995538_2996168_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	3.31882e-78
NZ_CP009110.1\|WP_017987958.1\|2993362_2993998_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	gnl\|CDD\|237411	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT.	1.09028e-107
NZ_CP009110.1\|WP_026153975.1\|2990028_2992152_-\|elongation-factor-G-like-protein-EF-G2	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_CP009110.1\|WP_017987960.1\|2994923_2995442_+\|DUF4262-domain-containing-protein	gnl\|CDD\|379457	pfam14081, DUF4262, Domain of unknown function (DUF4262). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 147 and 227 amino acids in length. Some members may be incorrectly annotated as the KatG protein.	6.31931e-44
NZ_CP009110.1\|WP_017987962.1\|2996164_2996758_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	2.03067e-76
NZ_CP009110.1\|WP_017987950.1\|2985944_2986553_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.54096e-19
NZ_CP009110.1\|WP_017987952.1\|2987463_2988603_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.5591e-65
NZ_CP009110.1\|WP_017987963.1\|2996785_2997829_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP009110.1\|WP_017987957.1\|2992360_2993275_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NZ_CP009110.1\|WP_017987967.1\|3001269_3001788_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	4.73211e-70
NZ_CP009110.1\|WP_017987951.1\|2986552_2987467_+\|phosphatidylinositol-mannoside-acyltransferase	gnl\|CDD\|236131	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional.	7.99446e-158
NZ_CP009110.1\|WP_017987964.1\|2997926_2998322_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235636	PRK05886, yajC, preprotein translocase subunit YajC; Validated.	4.54218e-26
NZ_CP009110.1\|WP_017987966.1\|3000038_3001268_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	5.81685e-107
NZ_CP009110.1\|WP_017987953.1\|2988599_2989094_+\|hypothetical-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.55851e-05
NZ_CP009110.1\|WP_026153974.1\|2989103_2989610_+\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	2.23029e-28
NZ_CP009110.1\|WP_026153976.1\|3004593_3005367_+\|enoyl-CoA-hydratase	gnl\|CDD\|235705	PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.	2.46265e-71
NZ_CP009110.1\|WP_017987965.1\|2998462_3000037_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	1.54598e-115
NZ_CP009110.1\|WP_017987949.1\|2985293_2985800_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.39512e-15
NZ_CP009110.1\|WP_017987968.1\|3001894_3004225_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0

>NZ_CP009110.1|WP_017987958.1|2993362_2993998_+|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT
MSAVPVIGVLALQGDVREHAAMVESAGGRAVAVRRESELAAVDGLVLPGGESTTMSRLLETFELLGPLRERLAAGLPAFGSCAGMILLAKQALDGRPDQHQLGALDVIVRRNAFGRQVDSFEEDLAFAALPGGPLHAVFIRAPWVEKAGDGVEVLATVPGADGTGARIVAVRQGPVLATAFHPELTGDDRVHRLFVEMVRDAATTSETEER
>NZ_CP009110.1|WP_017987957.1|2992360_2993275_+|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MSEVQSSSSATPETGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVARMSDPDLIEGIIDTVSIPVMAKARIGHFVEAQVLQALGVDYIDESEVLTPADYANHIDKWAFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRKIRAEIRRLTSLPEDELYVAAKELQAPYELVREVAEKGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAKRAEAIVKATTFHDDPDVIAKVSRGLGEAMVGINVDDVPEPHRLAERGW
>NZ_CP009110.1|WP_026153975.1|2990028_2992152_-|elongation-factor-G-like-protein-EF-G2
MADKQARTVDAGAAVAVDDPVKVRNVVLVGPSGSGKTTLTEALLTVSGTVTRAGSVVEGTTVCDHDPAAVRQQRSVGLSVAPVTHDGHKINLIDTPGYADFVGELRAGLRAADAALFVVCSAEGVDPATVAIWEECAAVGMPRAVIVSRLDHHRADPEGEIAACQDAFGAGVLPLYLPASGPEPGLVGLITRRLYDYSDGFLPRLGEPSPADLERLTEARNELIEGIIAESEDETLMDRYLAGEEISEDTLVSDLETAVARGSFHPVIPVCAATGVGLAEVLDGIVRAFPSPLEHKLPPVTTPEGAPHPELSTDPDGPLAAEVVRTAVDSYVGRVSLVRVFSGTLRPERPVHVSGHGMAERGHEDHDTDERVAHLYSPLGANLREVPYCVAGDLCALTKVGSAETGDTVSSPEHPLLMRPWPMPEPLLPVAVVARNRSDEDALARNLSRLVAGDPTLRLERNAETAQLVLWCMGEAHADVVLSRLRAGGAEVDTEPVKTSLRETFAAPAKGHGRHVKQSGGHGQYAVCDIEVEPLPRGAGFEFVDRIVGGAVPHQFIPSVEKGVRAQLQRGLVAGYPVVDVRVTLVDGKAHSVDSSDAAFQTAGALALKEAAANGRVVLLEPLDEVDVRVPDEYLGAVLGDLSSRRGRVLGTESVSGGRSIVRAEVPATELLRYTTELRSLSSGTATFTRRHTRYDPMPDNLVAAHA
>NZ_CP009110.1|WP_017987955.1|2989676_2989985_-|hypothetical-protein
MTSKRYHEDAAVLAAIGTAIGAHRITVRLPRALAEAAVAAWQRDETGPVEPETPEQWVLRDRAAELALIGLAVSERGRPDGDFVVVDLDVAAAGAAVRAARE
>NZ_CP009110.1|WP_026153974.1|2989103_2989610_+|XdhC-family-protein
MATEDSACAVAHGADDSQADTRTLVAVFASPVAEFLLRYGEDLGYRTLLFEPDPARAVPGVKVAAELPDLDADTDVVVTDHHRPELGAALRDVLARPVRWAGVMGNPRHEGPHVEALRSLGVAEADIARVHRPIGLDIGSRRPAEIAIATLAGLIADRNGRPGGFFGR
>NZ_CP009110.1|WP_017987953.1|2988599_2989094_+|hypothetical-protein
MNWFVLVVAIVAAIVVLGGLFLVATANRLDRLHVRLDAGWAALDAALARRAVVARAVAAVDGAAPGLREAADIAEKAPRAEREVAENELTRLLESVDRARLPASLAEELADAEHRVVIARRVHNDAVRDTLALRRRRKVRYFKLAGTARQPEYFEIAEPPVPGA
>NZ_CP009110.1|WP_017987952.1|2987463_2988603_+|glycosyltransferase-family-4-protein
MKVGIVCPYSFDVPGGVQGHVTDLARALRDRGHEVSVLAPADDDADLPDFVHPAGKALGIPYNGSVARLQFGPVSYARVRRWLREGGFDVLHLHEPAAPSLSLLALKVADGPIVATFHTSTPRSRTLSAFQPVLRPLLEKITARIAVSALARRVQVEHAGGDAVEIPNGVDVEFFSRAKPLEGYPRAGGTIGFVGRFTEPRKGMDVLLEAARRLLPEFPELRLLVVGRGEADALRRMAGPELAPHLELLGQVDDATKARALRSVDVYCAPNTGGESFGMILTEAMAAGTAVAASNLDSFRRVLDDGRAGALFTTGDSAALAGCLRDLLGDPARRTSLAAAAGERVAIYDWPVVVTQVLRVYETAIAADPRRVSAEDAPL
>NZ_CP009110.1|WP_017987951.1|2986552_2987467_+|phosphatidylinositol-mannoside-acyltransferase
MGRFGERMADFGYAAGWNVVRRLPVPLAKAGFGLAADFAAWRKGAGVRQLRRNLARVVPQADETELDELTRQAVRSYARYWHEAFRLPTMDADGIRARVDATISGVENLDAALTEGNGAVVALPHSGNWDVPGIWAVGRYGPFTTVVERLKPESLFQRFVAYRESLGFEILSADGGTGSFRLLLQRLRENRVVCLIADRDLSGSGVPVSFFGEKTSMPAGPARLAASTGAALLPVGSWFTEDGWGIRIHPRIRVAHRTEVPAATQALADVFAGDIAAHPADWHMMQKLWAADFEEATFSAEEAA
>NZ_CP009110.1|WP_017987950.1|2985944_2986553_+|CDP-alcohol-phosphatidyltransferase-family-protein
MLNIFARASVSRALDPLGHALVRAGLTPNAMTMIGTAGAIACALVFFPNGMLLAGTFTVWGFAMLDLLDGAMARARGYGTPFGATLDATCDRLADGALFAGIAWWCFAVEHNLRAAAACLICLVLAQVISYIKARAEAEGLKADGGLVERAERLIIALVGTGLEGLGVPFAVEGTLWLLAAGSIVTTVQRMLAVAASAREAG
>NZ_CP009110.1|WP_017987949.1|2985293_2985800_+|MarR-family-transcriptional-regulator
MSEPRWLSEDEQRVWRAFSVAVTMLRGHVDSQLQRDARMPHTYYEVLVVLSEAPGRTLRMSELAEKCHSSRSRLSHAVARLEANGWVRRDSCGTDKRGSFAKLTDRGFAALEAAAPGHVEAVREALFDALTPDQVRALGEISEAIRDKLTPRCAEAVAAEEARLDRLA
>NZ_CP009110.1|WP_017987960.1|2994923_2995442_+|DUF4262-domain-containing-protein
MPPVTETLVPEESDLLEWIVNQAETRGNAVISVAADDSGAGYAFTACVWALHEVPEAVVVGLPEQMAPILLDAYVDRAANGEEFVPGKVYDDFFEGVPVTFERVAKGHYLEYLGSAFLVYPDGDFPALQIIVATPDGHWPWSADAPEGFADWQPVLTESGAPESWTPGVDGP
>NZ_CP009110.1|WP_081617757.1|2995538_2996168_+|crossover-junction-endodeoxyribonuclease-RuvC
MRVLGVDPGLTRCGLGVVDGGTGRTVSCVAVDVVRTPVDDTLERRLLAVSDAVEHWLDTYRPEAVAVERVFSQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVTGSGRADKAQVTGMVTRLLGLAQAPRPADAADALALAICHLWRQPMRDRLAEAEARAAELARAHKARLAAAAKSAGTVAAVAPRRANTRTPGKGVRG
>NZ_CP009110.1|WP_017987962.1|2996164_2996758_+|Holliday-junction-branch-migration-protein-RuvA
MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPSTLATLRRGEEVRLYTSLVVREDSLTLFGFADAEARELFGLLQTVSGIGPRLALAALAVLDPDKLRTALAEGNITVLTQVPGIGRKGAERLTLELRDKVTAAGGSAEAAAAPAAGAVRAEVVEALTGLGFPAKQAEQAVEKVLAAGGADTTPAVLRAALSTLGRK
>NZ_CP009110.1|WP_017987963.1|2996785_2997829_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MTEHPADETLSALPQLGEREMETTLRPSRLSEFIGQPRVREQLELVLESARRRGVPPDHVLLSGPPGLGKTSLAMIVAAELDASIRITSGPALERAGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTGQMEFYADHELDQVVRRSAKILDIEIDAEGSAEIARRSRGTPRIANRLLRRVRDYAEVREDGKVTLAVARAALAVYDVDELGLDRLDRAVLSALVHSFGGGPVGVSTLAVAVGEEPATVEEVCEPYLVRAGMLARTPRGRVATASAWEHLGLRPPPRPDQAGPTLFD
>NZ_CP009110.1|WP_017987964.1|2997926_2998322_+|preprotein-translocase-subunit-YajC
MEQLFLPLLLMLVVAIPLVMGTRKQKRAVQEQQKLQSSLSEGDRVMTTSGLYGTVADTSSDTTIDIEIAPGVVTTWLRQAVREKVAPEVADEVETDEDDAAETAEVTETVEAPRAEAGEKAVAPSLESEKK
>NZ_CP009110.1|WP_017987965.1|2998462_3000037_+|protein-translocase-subunit-SecD
MAPPAGRIRPGRYLGFFVLIVVVLYALVFFTGGGKPTPKLGIDLQGGTRVTLSARTPDGSAPSRESLNQARQIIETRVNGIGVSGTEVVLDGNNIVITVPGEQGDQAKKLGQTAQLGFRKVIDAQPVTTPPVAPPPGQADDPAAIQEAKAARQAADLVTGTGDSLAAGPNASAALAAFTCSTQDPLRGNDDPNLPLLTCDQAGTEKYLLGPVFLKGTEIDNAVSSSPAQNKPQWTVDLTFKSEGRQVWADFTTANIGQRAAFVLDTQVVSAPTIQSAILDGNTQISGNFTQAQTKDLADVLKYGSLPLSFTSSDATTVSATLGLASLEAGLIAGGIGLALVFIYCLVYYRLLGVLTVVSLALSGLIVYAVLVLLGRWINFTLDLAGVAGFIIAIGVTADSFVVFFERLKDEIREGGRSFRSAVPRGWVRARRTILASDAVMFLASAVLYAIAVGDVQGFAFTLGMSTVLDLIVVFLVTHPLVALASRSKFLSQPKLTGLGGVQTLAAERRSARKVPAGAGAKES
>NZ_CP009110.1|WP_017987966.1|3000038_3001268_+|protein-translocase-subunit-SecF
MADELNTESTDAAPATKKAGRESVFHRLYVGTGAFDIVGKRKRWYIFFAVLVLVCIASIGIKGFNLGIEFEGGTQIQMPARGANGPITADEAKQAFADALGQQADSAQTVGVGDAATVELRSDTLDADQVAKVKQTLFDQLQPIGGNGQPSVQAISDSAVSASWGQEISQQALIALAVFMVLVTVFLAVYFERWMAVTALIALVHDIVVTAGIYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVKENTRGILGLTRRTYAETANLALNQTLMRSINTSVIALLPVLGLLVVGYILLGSGTLQDLALVQLSGMLAGVLSSLFLATPLLVDFKMRDPRYKQQAERVRARRANQARKAAEREADFDASDDEALDAELRKEKAYAAAASIPARTPKSQPRRGRPSGKRKR
>NZ_CP009110.1|WP_017987967.1|3001269_3001788_+|adenine-phosphoribosyltransferase
MDLERALGLIAEVPDFPEPGVLFRDLSPLFADADGFAAVIDALAATVDPGTDVLAAVEARGFLLAAAVGYARGMGVVLVRKPGKLPNVAGRVDYALEYGSATLELPSGVVRPGQRAVVLDDVLATGGTVAAACELLEKAGATVTGVSVVMELAALDGRSALSGRKVSSLLVT
>NZ_CP009110.1|WP_017987968.1|3001894_3004225_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MSQELESPAPARETADNRGTQPQGVTRAPSATRRVRARLARRITAQRAAPVKQVLEPLAAIHRDLHPNADLSLLQRAYDVAEELHRHQRRKSGDPYITHPLAVATILAELGMDTTTLVAALLHDTVEDTGYSVEQLTADFGDKVAQLVDGVTKLDKVKLGTAAEAETIRKMVIAMARDPRVLVIKLADRLHNMRTMRFLPPEKQVRKAKETLEVLAPLAHRLGMATVKWELEDLAFAILQPKKYDEIVRLVADRAPSRDIYLRKVIDELTGALGGSRITAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVEDVRDCYAAMGVVHALWQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHHTAEYGIAAHWRYKETKGTHHGTAVDIDEMAWMRQLLDWQREAADPGEFLDSLRYELAAREIFVFTPKGDVVTLPVGGTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGDVVEIFTSKAENSGPSRDWLTFAKSPKARAKIRQWFAKERRDEAIDAGKDAITKEVRKVGLPLQRLVSAEAMGALAAELHHPDISSLYAAVGESHVSAKHVVQRLVALIGGVEEAEDELAARSTPSTVTRRRAANDVGVVVKDATDVWTKLARCCTPVPGDEILGFVTRGGGVSVHRTDCTNAEDLRAQPERLVEVEWAPSANSVFLVSIQVEALDRHRLLSDVTKVLADEKVNILSASVQTSRDRVAVSRFTFEMGDPKHLGHVLKVVRGVEGVYDVYRVTSAS
>NZ_CP009110.1|WP_026153976.1|3004593_3005367_+|enoyl-CoA-hydratase
MTAGLEFARDGDVATLTFARPEKKNAISHDMWAAIPDVVAEVEGDPGLKVLVLTGAGPDFSAGADISEFGSLRSTADGAAAYDQVVEGAVTALAGMTKPTVAKIRGNCIGGGCQISVACDFRFADTTARFGITPAKLGIVYDFRSTRQLVSLIGPAHARYFLLSGQLIDAARAREIGLLNDVFTDLDAGVSDFAATLCSRSQTSVRGMNRIIGKILDGQSESDSEVEGIRSAAIHGEDYAEGVAAFLDRRPPKFTAS

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Crispr_ID: NZ_CP009110_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_6

3415333-3415425

Orphan

Consensus_repeat	Method
GGGTGGTCATCGGGCTCCGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_6

>merge|NZ_CP009110|6|3415333-3415425|CRISPRCasFinder
GGGTGGTCATCGGGCTCCGATCGTGCGCGTGGGCGTGGCCGATCGGGGTCGCTGAGCCGCGGTCTGGTGCGGGTCGTCATCGGGCTCCGATCG

>NZ_CP009110|6|6|3415333-3415425|CRISPRCasFinder
GGGTGGTCATCGGGCTCCGATCG	TGCGCGTGGGCGTGGCCGATCGGGGTCGCTGAGCCGCGGTCTGGTGC
GGGTCGTCATCGGGCTCCGATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017982209.1\|3412928_3413528_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|238348
NZ_CP009110.1\|WP_017982222.1\|3424062_3425298_+\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340923
NZ_CP009110.1\|WP_017982205.1\|3407026_3409795_+\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP009110.1\|WP_017982206.1\|3409851_3410970_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP009110.1\|WP_017982207.1\|3411203_3412157_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107205
NZ_CP009110.1\|WP_017982217.1\|3418672_3419371_+\|CDP-alcohol-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|140328
NZ_CP009110.1\|WP_026153102.1\|3413578_3414274_+\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NZ_CP009110.1\|WP_017982214.1\|3416225_3417269_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009110.1\|WP_017982203.1\|3404220_3405957_-\|sulfate-permease	unknown	unknown	gnl\|CDD\|273284
NZ_CP009110.1\|WP_017982224.1\|3426094_3426289_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP009110.1\|WP_017982204.1\|3406067_3407012_+\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
NZ_CP009110.1\|WP_026153104.1\|3421441_3422365_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176148
NZ_CP009110.1\|WP_017982208.1\|3412150_3412927_-\|Myo-inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP009110.1\|WP_017982216.1\|3417626_3418640_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|176217
NZ_CP009110.1\|WP_017982218.1\|3419355_3420918_+\|sulfatase	unknown	unknown	unknown
NZ_CP009110.1\|WP_017982221.1\|3422466_3424035_+\|benzoylformate-decarboxylase	unknown	unknown	gnl\|CDD\|235931
NZ_CP009110.1\|WP_017982215.1\|3417246_3417657_-\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501
NZ_CP009110.1\|WP_017982202.1\|3403751_3404264_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017982219.1\|3420950_3421397_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP009110.1\|WP_017982211.1\|3414194_3415169_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017982209.1\|3412928_3413528_-\|GTP-cyclohydrolase-II	gnl\|CDD\|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	2.83226e-95
NZ_CP009110.1\|WP_017982222.1\|3424062_3425298_+\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|340923	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily. This aromatic acid:H(+) symporter subfamily includes Acinetobacter sp. 4-hydroxybenzoate transporter PcaK, Pseudomonas putida gallate transporter (GalT), Corynebacterium glutamicum gentisate transporter (GenK), Nocardioides sp. 1-hydroxy-2-naphthoate transporter (PhdT), Escherichia coli 3-(3-hydroxy-phenyl)propionate (3HPP) transporter (MhpT), and similar proteins. These transporters are involved in the uptake across the cytoplasmic membrane of specific aromatic compounds such as 4-hydroxybenzoate, gallate, gentisate (2,5-dihydroxybenzoate), 1-hydroxy-2-naphthoate, and 3HPP, respectively. The PcaK-like aromatic acid:H(+) symporter subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.48109e-95
NZ_CP009110.1\|WP_017982205.1\|3407026_3409795_+\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP009110.1\|WP_017982206.1\|3409851_3410970_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009110.1\|WP_017982207.1\|3411203_3412157_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107205	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.	9.4709e-76
NZ_CP009110.1\|WP_017982217.1\|3418672_3419371_+\|CDP-alcohol-phosphatidyltransferase	gnl\|CDD\|140328	PTZ00307, PTZ00307, ethanolamine phosphotransferase; Provisional.	4.53225e-07
NZ_CP009110.1\|WP_026153102.1\|3413578_3414274_+\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	1.19091e-67
NZ_CP009110.1\|WP_017982214.1\|3416225_3417269_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.72753e-35
NZ_CP009110.1\|WP_017982203.1\|3404220_3405957_-\|sulfate-permease	gnl\|CDD\|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	3.76942e-115
NZ_CP009110.1\|WP_017982204.1\|3406067_3407012_+\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	1.78096e-143
NZ_CP009110.1\|WP_026153104.1\|3421441_3422365_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176148	cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate of the oxidative degradation of the aromatic ring in soil bacteria. LinR positively regulates expression of the genes (linD and linE) encoding enzymes for gamma-hexachlorocyclohexane (a haloorganic insecticide) degradation. Expression of linD and linE are induced by their substrates, 2,5-dichlorohydroquinone (2,5-DCHQ) and chlorohydroquinone (CHQ). The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.33627e-53
NZ_CP009110.1\|WP_017982208.1\|3412150_3412927_-\|Myo-inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	2.49971e-59
NZ_CP009110.1\|WP_017982216.1\|3417626_3418640_-\|dehydrogenase	gnl\|CDD\|176217	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	3.79139e-69
NZ_CP009110.1\|WP_017982221.1\|3422466_3424035_+\|benzoylformate-decarboxylase	gnl\|CDD\|235931	PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.	0
NZ_CP009110.1\|WP_017982215.1\|3417246_3417657_-\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	8.48915e-27
NZ_CP009110.1\|WP_017982224.1\|3426094_3426289_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.45727e-14
NZ_CP009110.1\|WP_017982219.1\|3420950_3421397_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	1.6416e-47
NZ_CP009110.1\|WP_017982211.1\|3414194_3415169_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	2.91774e-14

>NZ_CP009110.1|WP_017982211.1|3414194_3415169_-|flippase-like-domain-containing-protein
MTTPTAARAPTARLWPWLRLLTAAGILATLFWKVGSGAFLTGLGLIDTESVVLALAIGLLTTVTAAGRWVLVTRGLGLPLQLPAAVAAYYRSTLLNSVLPAGVLGDVDRAVSHGHDSGDVGRGVRAVVLERFAGQAVLLVAGVTVLALHPDLLPGLSTGPGLLVLLGAALVVAGLLAAKPAWRGAATRTLADARGLLGGPTAAGIVALSALTIAGHVAMFVLAARLAGVTAPVTTLVPLVVLALVVMALPLNIGGWGPREGFTAVAFGATGLGAGAGVTTAVVYGVLSLVAALPGVLALRRREGAGAPGTRGPARPAPSGLSPV
>NZ_CP009110.1|WP_026153102.1|3413578_3414274_+|creatininase-family-protein
MMNPLPPDTTDDVRGAAVAVLPVGSLEQHGPHLPLTTDTLIACAVASRIAQDHGFWLLPPVTVSCSHEHAAWPGTVSISVTTLVAVVEDIATSLRASGVGRLVLVNGHGGNHVLANVVQQAGGSMVLFPTYGEWQEARAAAGVRTSNDEDMHAGELETSILLCAAPEVVRPGYETADSAPGDLRHLLSLGLAPYTESGVAGHPSLATPEKGRKVLDALARAFRAHLPLLAS
>NZ_CP009110.1|WP_017982209.1|3412928_3413528_-|GTP-cyclohydrolase-II
MEIAESTLVTRRGKFRSVAFRDGAEHLALAHGRLRRDDVLVRVHSECLTGDVFGAVRCECGEQLDAALDAIVCEGSGVLVYLRGHEGRGIGLVAKVRTHVLQDEGLDTVDSATSLGLPVDVRDYSPAARVLRHLGVRSVRLMSNNPDKIAALESNGIRVSARVPLLAPASPDNIRYLTAKRDRLGHVLPQVDTFDVAEH
>NZ_CP009110.1|WP_017982208.1|3412150_3412927_-|Myo-inositol-monophosphatase
MDHLSLLPVAREAVAIGRRIVTSRAPRSVTAKSERDLVTDIDLAVEEAVREFLARETPDIGLVGEEHGGERGALWWVLDPVDGTANFARGIPLTGISLALVSGERSVVAAIDLPFLDTVYTAVEHYGAFAGDTRIAVSGASELADAMVSLGDFAVGADAGPKNRLRLALLEQLGARAERVRMIGTAAADLAWVAHGRLDATIILSNLPWDTMAGVLLVREAGGLVLDADGSDHTVSSASTIALAPGLRDVVLELLRAC
>NZ_CP009110.1|WP_017982207.1|3411203_3412157_-|pyridoxal-phosphate-dependent-enzyme
MLTTRLDTARIRAARTVIDPVFLDTPCYRCDALEPVLACAVGIKLETANPVRCFKGRGTEVIADALGSGAVVCASAGNLGQALAWSGRRRGLDVTVVAARSAPVAKLDRIRALGARLELVDGDFERAREQAADIARHHDIRLVEDSLDLETCEGAATIGLELVEQAPSADVVLIALGGGAMATGVGHVLKALAPGVEVICVQPLGAPAMTLSWRQRRVVTTESAETIADGVAGRFPIPEVLDDLLQVADDAVLAREESITTGMRLLLDHAGLVVEPSAALGVAAVLEDRERFAGRHVVTIICGSNVDPDTHRRWTSR
>NZ_CP009110.1|WP_017982206.1|3409851_3410970_-|LLM-class-flavin-dependent-oxidoreductase
MQFGIFSVSDVTTDPTTGETPDDTQRVRSMLTIAQHADQAGLDVFATGEHHNPPFVASSPTTMLGYLAGVTKDIILSTSTTLITTNDPVKIAEDYAMLQVISGGRMDLMMGRGNTGPVYPWFGQDIRQGIPLAIENYALLRRLWEEDVVDWEGNFRTPLRGFTATPRPLDGVPPFVWHGSIRSPEIAEQAAYYSDGFFHNNIFWPMSHTKQMVRFYRQRFEHYGHGPADTAIVGLGGQVFMRKNSQDAWNEFRPYFDNAPVYGHGPSMEDFTATTPLTVGSPQQVIDRYASMREDVGDYQRQLFLIDHAGLPLKTVLEQIDLLAEEVVPVLRKEMEAKRPEHVPANPPSHAERVAAARAKAAEDKAGAPAVS
>NZ_CP009110.1|WP_017982205.1|3407026_3409795_+|HAD-IC-family-P-type-ATPase
MVQSSGTRAAPAGSWCTRTAEDTAAFFGVDPDRGLTAARAAELLRANGPNALPEEKPRPGWLRFLAEYRSYMQMILVAAAAVSLAIQQWTTAVLLVVLTVLNAVVGLRQQGKADSAMNALKKMMKATARVRRDGQEAVVPAEELVAGDVVLITAGDEVPADGRIVRAAALQIDESALTGESVPAVKSAEVLDGDHLGPGDQANMAFMHTPVTHGSGTVVVTATGAGTELGRISGMLSATEPEQSPLTRELNRLTLWIAGAAGLTMIVMFVLGHNRGQAWDALFVSAVSLAIAAIPEALPTVTQTILSLGGVDLAKRNAIVKDLPSVETLGFISAINSDKTGTLTMNQMTAVEVVDPGDRYTVSGSGYDLDGRIHRVAGSADGIGEAILPYLVASDARLVGGKVVGDPTEGALLVLGHKAGIDVEGTREALPRLATLPFDPAYKLMATFHRAPNAAGEPVVRCYVKGAAPAVLSRAGSALSASGTLAWDADLSARAQAHLERMEGQGMRVMAAATRDIDPAGFDPHGDLLGHVTGLKVTSLVGMVDPPRDTSAEAVASARAAHIRVRMVTGDDVITGAAIAAQLGIPGQAMLGADFAALPEAERMSRIDDIGVLGRVAPEHKVLLAETLKKKGDVVAMTGDGVNDAPAIKAADIGIAMGSGTEVAKNAGRMVLSDDNFATIVFAVEQGRKIYDNLTKYIRFVLVLLVVFVLTFLGAALFGIAAGEPFNPAQVLWIHFFVNAAFGFALGFDRESPGLMNRTPRPRGSSVLSRGVVVTVGVSGLVISAMLLAVLYLGADRFDPAVANSIAFTTFALCLIVAGLECRNETASVLTPSTFDSKQLNWAVFAEFVLAVLVTQVDGFQRLLGTTELTALQFGWALVPPVVLLVLWELGKLAARRWAGQPAAGRRDAVPAVARHRAQPSS
>NZ_CP009110.1|WP_017982204.1|3406067_3407012_+|polyphosphate-kinase-2-family-protein
MNDVRAKRIAKFIEPFRVEPGSKVKLDRDFDPAFKAGVTKKREGRELLRTGVELLAEYQRRLAAQGTHGVLLCLQALDAGGKDGTIRHVMSGVNPQGVAVSSFKVPSTAELGHDYLWRYACRLPARGEIGIFNRSHYEEVLVVRVHPEHLDRQRLPAGSLGKDLWARRYREINDWERYLSDNGFAVVKLFLNLSWSEQRARFLKRIDVPERNWKFSAADIRERAYWSDYQHAFSEMLSATSTAWAPWHVVPADRKWFARLCAGAVLAHTLIELDPQYPRVSSEARDELRDARAKLVAETEPAPARHGRAAAGRA
>NZ_CP009110.1|WP_017982203.1|3404220_3405957_-|sulfate-permease
MSHWVPGLRQIRSYERRWLAKDLVAGVVLTTLLVPQGMAYAELAGLPAITGLYTSILCLLGYAVFGPSRILVLGPDSSLGPMIAATILPLVAAGGDPGRAVALASMLAILVAAIMIVASVAKLGFIADLISKPTMIGYLNGLALTIVVGQLPKLCGFSVDADGLIAEIGAVARGIFGGDVNGAAAAVGICGVAAILGLQRWLPKIPAVLVVVVLAIAAVPLFDLAARGVDLVGVLPKGFPPLSIPDIGLSDLAPLFAGALGIALVSLADTISTASAFAARTGQEVHGNREMAGIGVANLAAGLFQGFPVSTSGSRTAVAQQAGARTQLTGVVGAVLITVMILVAPGLFRNLPQPVLAAIVITAALSLADVRGTVRLWRQRRTEFLLSAAALLGVALLGVLPGIAVAVVLSILNVFRHAWLPYQTELGKADGVPGYHDVRSYPDARRPAGLVIFRFDAPLIFANAKTFREAVRRLAARDPAPHWIVVAAEPVTDVDTTAADMLRDLDDELNALGTHLVLAELKDPVRRKIDRYELTRTLDPDHFYPTVSSAVEAFCRRTGNGWVPVSAGAAEPGSSTGS
>NZ_CP009110.1|WP_017982202.1|3403751_3404264_+|hypothetical-protein
MIGEPADRTTVGTAGRRRAAGIYGAIVTAAILTAVGEQLPTAALAVAVVVTLLVYWSAEEFAEILGEHTSGGRLPTRAQVWTELRATWPMVTASYGPLAALLLARLAGATPLTAANVGLVTTVVLLVAHSWSAARAARLRGVPLVVATCAAGLLGVVMILLKNLVLLHLH
>NZ_CP009110.1|WP_017982214.1|3416225_3417269_-|glycosyltransferase-family-4-protein
MIFILPGDVDDPELPSGGNVYDRRISRELTALGRPVREVAVDGSWPHPSPAACAALDRALAAAEPGSLVVIDGLVACGVPDVVVPHAARLRLVVLVHMPLADETGAHAELDALERSTLRAASAVVTPSARTAARLVRRHGLPRDRVHVVTPGTDPAPLSSGEELLCVASLTPHKGQDMLVEALAAVADLDWACRLVGPVHRSPAFAARVRDLVARHELTARVTIPGPLTGTALEEAYARAGLLVLPSRSETYGMVVTEALARGIPVLTSVETEALGRAADGTPPGTVVPPGDVDALAGALRSWLTSAGTRSALRRAARSRRDGLLPWTTTARVMDRILFEPEPGARP
>NZ_CP009110.1|WP_017982215.1|3417246_3417657_-|6-carboxytetrahydropterin-synthase
MFSVTVRDHVMVAHSFRGEVFGPAQRLHGATFVVDATFRRAELDADNIVVDIGLATQQLGAVLADLNYRNLDEVPEFAGVNTSTEFLAKVIADRLADRVHSGALGAGAHGLAGISVTLRESHVAWASYDRDLHPAG
>NZ_CP009110.1|WP_017982216.1|3417626_3418640_-|dehydrogenase
MTRAARAFWFNPPGPGEVRTVPLPARGPDEVEVRTLFSGVSRGTETLVFRGAVPVSQHELMRAPFQEGGFPGPVKYGYLNVGVVEDGPPELAGRTVFTLYPHQTRFVVPASAVTPVPDAVPPGRAILAGTVETAVNALWDAAPLLGDRVAVVGGGMVGCAVAALLARFPAVRAQLVDVDPARAAVAAALDVGFALPGDATDGCDLVVHTSGTDAGLARALELVAPEGEVLELSWYGDRRVSVPLGEFFHSRRLTIRGSQVGMVSPARRSQRSFGDRLALALELLADPVFDTLITGECVFEDLPSVMPGLASGAIPALCHRVAYPEESSCSASPSATT
>NZ_CP009110.1|WP_017982217.1|3418672_3419371_+|CDP-alcohol-phosphatidyltransferase
MIVQTQRGTVAAGREQALAACGLIVLLNVLAMTLGLGVPGWLAGAAYGAALLGLLGAALRRSGRPVLGPADRVTLARATLVGGVVALVATGLSGPVLVALAAVALALDAVDGQVARRTGTVSPLGARFDMEVDAFLILVLCVPVALTLGPWVLLIGAMRYAFVVAGWLVPWLRGPLTPNLARKAVAAAQGAALVVVVADVLPRPVAVVVAGGALAALVWSFGRDVGTLWRNR
>NZ_CP009110.1|WP_017982218.1|3419355_3420918_+|sulfatase
MAEPVTARRVAADVLACVLVVAALVVPNNLALFGPATLLRIPVEAVAGVALMLVLPPCGRRIVAAVAGAVLGVLVLFKIADIGFHRAFDRPFSLVFDWSFAGPALSLLGGFARVAAVAGAVLAAVALVLLTTWAAMRLARVATDHRAVSARVVAVLAVVWIVAALTGLPLASRTTAALAYREARAVASDLADQREFAAEMAADAFRGTPSDQLLTSLRGKDFLLNFVESYGRVAVDDPGVTALLDSGSARLRAAGFSARSAFLTSSTSGGGSWLAHSTMESGLWVDNQQRYRTFVGSDRLTLSGAFARAGWRTVNVQPENGADWPEGAVYRFGRLYDGRNIGYRGPNFSYAAMPDQFTLSAFHRDEMTPGHVPLMAELDLVSSHWPWAPLPRMVDWGTVGDGSTFTHTGPSVDEVWSDPARVRAAYGDAVEYSLSALLSYVETFGDDNLVLVFLGDHQPNTSVTGEGASRDVPVTLVARDPAVLDRITGWGWQDGLRPAPDAPVWPMSAFRDRFLTAFGP
>NZ_CP009110.1|WP_017982219.1|3420950_3421397_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MPLTGEYEPGTMTMSRNQVEQIEGSGGTKGVSVQGMPVIVLTTVGRKSGKLRKAPLMRVEHDGVYAAVASLGGAPKNPVWYLNALADPRVEVRDGEQVFDMVAREAGGDEREVWWKRAVEVFPQYAKYQESTERQIPVLVLEPAPAPH
>NZ_CP009110.1|WP_026153104.1|3421441_3422365_-|LysR-family-transcriptional-regulator
MRDFDLNLVRTFVLLYETRSVTATAESLHVTQPTVSYSLQKLRRRFSDELFRRTGGGLAPTTTAQALYPSLHHALAEIESTLSGAHTFDPATARARFTLCLSDLGEVSLLPRLMAALPSRAPGVTLTVRPLDVDSAVDQLGRGEIDAFVASPLISSQRVARIPLFAEGYVGMVAAGHPRLRGTSATLADLTREQHIAVFGPTGHHGPRRALEARGLLDRVVLEVTRFSTLPYLVQDSELVAMVPRLVADVFAADHRVRLLELPFDIEPAQVSVYARHGHARTPAQHWLTAFMREVLSEPAIRESLLP
>NZ_CP009110.1|WP_017982221.1|3422466_3424035_+|benzoylformate-decarboxylase
MPTVRRIAHEFLERRGLTTIFGNPGSNELPFLAGLPDGFTYVLGLHEGVVVGMADGYAQATGRPVLVNLHAAAGSGNAMGALTNAVYSRSPLVLTAGQQVRSAIGLEAMLANVDATQLMRPLAGWSGEPSCPGDVPRSLAQAVFEAELQRRPTYLSVPYDDWSAEIDDNPVLDRTVRRGLSPDEGQLDDLARRLDTARNPVLVLGGDIDTLGLFERAVSFAEHRALPVWVAPSPHRLPFPNRHPLFRGVLPAGIGSVSAELDGHDLVLVLGAPVFRYHQHVPGPFLPEGATLVQVTDDPGEAARAPMGESLVASAGAVLDGLLARLPAREPGETAFVPNPAAATGERALHPEQVFAALRETQPADTAYVVESTSTNSAWWRQMDLRRPGSYFWPAAGGLGFGMPAAVGVAMGLPGRPVVGVIGDGSANYGITALWTAARYRVPVTFVILRNGTYGALRWFADLLGTTDVPGTEIPGLDFAAIAAGYGVPATTVSDVDDLHAQLKTTPTGPRLIQVDTELTTP
>NZ_CP009110.1|WP_017982222.1|3424062_3425298_+|aromatic-acid/H+-symport-family-MFS-transporter
MTTSPTRSVWTAVLCWLTVLLEGYDLVALGATIPTLLKTGHLGFTAAGATAVATVSLIGVAVGAAALGPLTDRFGRRIMLIGSVLLFSVFTLVLPLAPNVATFGVFRFVAGLGLGACMPVALTVMSENLPARRRASASTFTMTGYHVGAVLTSLLALAAVENWHVLFYGGGIAGLLVVPIMWRKLPESAAYLEAKQDAQKFSVRDLIGPKFRRISIAVWTGSFMGLLLVYGLNTWLPQLMRTAGYPLSTSITLLLVLNIGAVIGLVLAGTIADRFGIRPVARIWFGAGAVLLALLSLKIGNSFALNALVLLTGVFVFSAQVLIYGYVAHAFPAQARGTALGMTSAIGRLGSILGPFVTGALVTAGVAYPWGFYFFAVVAALGLCAILLLGSGKRDAAAVAQASPAQEGLQH
>NZ_CP009110.1|WP_017982224.1|3426094_3426289_+|helix-turn-helix-transcriptional-regulator
MLSATLRSLVLDGLAQRRVEATVPPSVHCRLTDLGLSLESALAVVRDWAETHMAEIDRAAAEGS

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Crispr_ID: NZ_CP009110_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_7

4529665-4529765

Orphan

Consensus_repeat	Method
GGACAGCTTCGGCTGGCTGTCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_7

>merge|NZ_CP009110|7|4529665-4529765|CRISPRCasFinder
GGACAGCTTCGGCTGGCTGTCCCGGCACTGAGGGCTGGCTTGAGGGGCCGCGCGAGTGGCCCCGAGGAGTCCACAGCGGACAGCTTCGGCTGGCCGTCCCG

>NZ_CP009110|7|7|4529665-4529765|CRISPRCasFinder
GGACAGCTTCGGCTGGCTGTCCCG	GCACTGAGGGCTGGCTTGAGGGGCCGCGCGAGTGGCCCCGAGGAGTCCACAGC
GGACAGCTTCGGCTGGCCGTCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017983331.1\|4537226_4537652_+\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|367422
NZ_CP009110.1\|WP_017983320.1\|4523361_4524408_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703
NZ_CP009110.1\|WP_017983335.1\|4540159_4541200_-\|tryptophan-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|260107
NZ_CP009110.1\|WP_017983318.1\|4521115_4522354_-\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP009110.1\|WP_017983327.1\|4529768_4530236_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009110.1\|WP_017983315.1\|4518712_4519342_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179115
NZ_CP009110.1\|WP_017983325.1\|4527408_4528932_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341259
NZ_CP009110.1\|WP_085929418.1\|4519626_4520151_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP009110.1\|WP_017983323.1\|4526291_4526744_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240372
NZ_CP009110.1\|WP_051079541.1\|4520322_4521132_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181334
NZ_CP009110.1\|WP_017983329.1\|4533846_4534011_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017983322.1\|4525741_4526188_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009110.1\|WP_026153248.1\|4526703_4527249_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP009110.1\|WP_017983334.1\|4538753_4540139_-\|tryptophanase	unknown	unknown	gnl\|CDD\|237314
NZ_CP009110.1\|WP_020486714.1\|4534772_4537205_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|377989
NZ_CP009110.1\|WP_167345506.1\|4533326_4533515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274561
NZ_CP009110.1\|WP_017983319.1\|4522492_4522966_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP009110.1\|WP_017983332.1\|4537651_4538017_+\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_CP009110.1\|WP_017983333.1\|4537997_4538597_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367304
NZ_CP009110.1\|WP_017983337.1\|4543234_4544098_-\|p-hydroxycinnamoyl-CoA-hydratase/lyase	unknown	unknown	gnl\|CDD\|236383

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017983331.1\|4537226_4537652_+\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	2.09977e-22
NZ_CP009110.1\|WP_017983320.1\|4523361_4524408_-\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.3575e-74
NZ_CP009110.1\|WP_017983335.1\|4540159_4541200_-\|tryptophan-dimethylallyltransferase	gnl\|CDD\|260107	cd13930, PT-Tnase, Aromatic Prenyltransferases (PTases) associated with tryptophanase. This group of bacterial and fungal proteins shows homology to the DMATS/CymD family of ABBA prenyltransferases, which prenylates indole, tyrosine, and xanthone derivatives. Some of the members, mostly fungal proteins, are associated with tryptophanase-like domains (Tnase) which catalyzes the degradation of L-tryptophan to yield indole, pyruvate and ammonia, or the degradation of L-tyrosine to yield phenol, pyruvate and ammonia. This suggest that these otherwise uncharacterized proteins may exhibit multiple functions.	4.08363e-105
NZ_CP009110.1\|WP_017983318.1\|4521115_4522354_-\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP009110.1\|WP_017983327.1\|4529768_4530236_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.61281e-21
NZ_CP009110.1\|WP_017983315.1\|4518712_4519342_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	1.01356e-08
NZ_CP009110.1\|WP_017983325.1\|4527408_4528932_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	0
NZ_CP009110.1\|WP_085929418.1\|4519626_4520151_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.75169e-25
NZ_CP009110.1\|WP_017983323.1\|4526291_4526744_+\|hypothetical-protein	gnl\|CDD\|240372	PTZ00344, PTZ00344, pyridoxal kinase; Provisional.	0.00703239
NZ_CP009110.1\|WP_051079541.1\|4520322_4521132_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181334	PRK08263, PRK08263, short chain dehydrogenase; Provisional.	3.8743e-134
NZ_CP009110.1\|WP_017983322.1\|4525741_4526188_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.26532e-15
NZ_CP009110.1\|WP_026153248.1\|4526703_4527249_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.70691e-26
NZ_CP009110.1\|WP_017983334.1\|4538753_4540139_-\|tryptophanase	gnl\|CDD\|237314	PRK13238, tnaA, tryptophanase.	0
NZ_CP009110.1\|WP_020486714.1\|4534772_4537205_+\|sensor-histidine-kinase	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	1.94657e-26
NZ_CP009110.1\|WP_167345506.1\|4533326_4533515_+\|hypothetical-protein	gnl\|CDD\|274561	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream. [Cellular processes, Pathogenesis].	1.71659e-10
NZ_CP009110.1\|WP_017983319.1\|4522492_4522966_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.59864e-21
NZ_CP009110.1\|WP_017983332.1\|4537651_4538017_+\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	7.51206e-32
NZ_CP009110.1\|WP_017983333.1\|4537997_4538597_+\|ATP-binding-protein	gnl\|CDD\|367304	pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.	1.62091e-36
NZ_CP009110.1\|WP_017983337.1\|4543234_4544098_-\|p-hydroxycinnamoyl-CoA-hydratase/lyase	gnl\|CDD\|236383	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated.	3.90212e-171

>NZ_CP009110.1|WP_017983325.1|4527408_4528932_+|long-chain-fatty-acid--CoA-ligase
MSFNLAIMLRESATATPGKDFLRFPSGAMTYAEVDERSGRVAVALREAGLRPGDKVAVQLANVPEFVIAYFGILKAGLTMVPLNPLLKAAEIAYHLDDSDARMIIAHAGGAAEVTTALKEVPDVRAVVVGDLDADAWPEGTLSFPALLEPADDGDIFPGAADDTAVLLYTSGTTGRPKGAELSHFQLYMTCTLGGERFGAEPEDVALAVLPFFHVYGLSSILNASARHGRTISVVPRFEVPAVLEAIQRDRVTIMAGVPTMYHALAYADTTGYDTSSLRIGSSGGAAIPEEVLRRFEEKYGIPVLEGYGLSESASTTTVNPGADNRKILSIGKPIWGVELRIVDDQDRPLPSGQVGEIVLRGHNITKGYYKRPQETAEAFRGGWFHTGDLGYVDSDGFVFIVDRKKDLIIRGGFNVYPREVEELLYRHPAVGEAAVIGEPDERLGEEVVAVVSLKPGANAEPAEIVAWAKERIAAYKYPRRVRIVDELPKGATGKIAKLELRARLRG
>NZ_CP009110.1|WP_026153248.1|4526703_4527249_+|GNAT-family-N-acetyltransferase
MESPLITDRLVIRDWTADDADAAFAIYGSEEVTHWLTPVMDRVGDVAAMRAVLQAWHEAQPNLPPPRGRWAMERRENGQVIGGLAIRLLPPYEEDLELSWQLHPDAWGNGYATEGSQALIRWAFTQDTDELFAVARPNNVRAIATAKRLGMQWVGETTKYYDLRLQVYRIRPGDLDDAPGT
>NZ_CP009110.1|WP_017983323.1|4526291_4526744_+|hypothetical-protein
MTDFWIDDALQRVLNHPTDIRTLRESAATFLDGCTVETVTDALLVIDALASTAYEQGCLPATIRLVREGTESGWLRISLSAPGVELPSPDSGFGTGLHVLTTCAALWGRSGDGDRTALWAHLPLVAAVPAALHVAFTHGVAPDHRPAGHP
>NZ_CP009110.1|WP_017983322.1|4525741_4526188_+|MarR-family-transcriptional-regulator
METTAPERLRALPSWLLTQTAHHAHRLVTEGLSEAGARGYHYRLLAALEESGPASQATLGRRSAIHLSDLVATINELADRGLVSREPDPADRRRNVITITAAGRRQLKRLDKQIVRIQDDLLAPLSGPEREQLTGLLSRLLRHHTQGA
>NZ_CP009110.1|WP_017983320.1|4523361_4524408_-|phosphotransferase-family-protein
MPEAEILSPGELRALGAWMDRQGLPGGPVEDLAPIAGGTQNLMLSFRRGGRAYVLRSGPRHRRARSNDVLRREMRVLAALSGTPVPHPELIAACPEETVLPGAVFYLMEPVDGYNATVELPEPHATRPELRHEMGLAMGDALAALSAVDHERAGLSDFGRPHGFLERQVPRWLAELDSYAGQDGYPGPDLPGVEAVADWLAQRVPQRWTPGILHGDYHLANVLFDRRGATVAAIVDWEMSTIGDPLLDLGWLLATWPGTRPMLGWTGLATAGDLATEEEIVARYAARSGRNTSGIAWYAVLACFKLGIVLEGTHARACAGKAPRAIGDRLHTAAVALFEQALDRIARS
>NZ_CP009110.1|WP_017983319.1|4522492_4522966_+|universal-stress-protein
MEEYGPAWSPGPFERGTDGPHVVLAGVDGSPSASRAGAYAAGLARRQRSRLVLVYVLAPTAWTGMASGYLAAAQEQAYEATIDEMRRPIRDLADEAGLPITFIVRRGDAFTELRRTAVELHADLVVVGASESRGHRIVGSVANRLVRSGLWPVTVVP
>NZ_CP009110.1|WP_017983318.1|4521115_4522354_-|threonine-ammonia-lyase-IlvA
MRAADVAMAAARFAGVMQPTPLHRNERLSLQHGVDVWLKREDLSAVRSYKGRGAYNLVSQLSLEERARGVVCASAGNHGQGVAFASAALGVLARVYLPRTTPRQKRDRVARLGGEHVQIVMHGDTYDDAAAAAQEYAASTGTTMIPAFDDPRTIAGQGTVVKEAIEQLGRAPDAVIVPVGGGGLLAGTLAWLRETHPEVRVIGAEPQGAASMALALEHGAPVAMETIDPFVDGAAVRLVGQHTYALAAERRPGMIAVPEGKICVEMLDLYQSDGIIAEPAGALSPAALGLDLDLEPGSTVLCIVSGGNNDVSRYAEIVERALIFEGRKHYFLVEFPQEPGALRRFLDDVLGPDDDITLFEYVKRNNRETGPALVGIELGSPDNLEPMMKRMAAGPHRIERVPPDSPLFTFLV
>NZ_CP009110.1|WP_051079541.1|4520322_4521132_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTGASRGLGRAFTEAALDRGDRVVAGSRTITTEATDRLLPVQLDVTRREDVFRAVEQAVDRFGHLDVVVNNAGTLSMGMVDEFTEDEASAAMEANFFGALWVSQAVLPVMRRRRSGRILQISSIAALGGFPMTGLYSASKFALEGMSEALAREAASFGVKVSIVQPGGYWTDLFTAPAMASPVDDYAPLRQEMERQWSEGSVDSDPALAAEALLKLADSEDPPLRLLLGSMVYDLAHDLTRQRLDGWADWEEVSRAAEKAIPMPVTPGT
>NZ_CP009110.1|WP_085929418.1|4519626_4520151_-|TetR/AcrR-family-transcriptional-regulator
MAAAFELVGEVGYAKLSIEGIAARAGVGKQTIYRWWPSKGAVLLDAFLMLSEGDGGGLPDTGDLEADLKTVLRATVKELTDERFDLTMRALSSEIMHDPELARMYAERLDEPVRELKKQRLRKAVEAGQLSDVDLDVAVDVIWGPVTVRWMQRGPLTVEFADQVVETALSGLRP
>NZ_CP009110.1|WP_017983315.1|4518712_4519342_+|TetR-family-transcriptional-regulator
MRVIKEVRPDLGLSPAEEARRSQIIAATLATISELGYRRTSFARIKERAGLSSTRLIGYHFGTKAGLMQAVVTTAMSIRDRYLEERAGDTTDRAAMLRALIETEVMFARDHPECVRVLREVAANADDPDGWPVAGPLLSGFRTGRIERMLTQGQREGAFGEFSAEVAARTIAQSIDGAIQAYAENPALDLESYGRQLADFFEQAVAAKN
>NZ_CP009110.1|WP_017983327.1|4529768_4530236_-|MarR-family-transcriptional-regulator
MDDRETRPPTLLALPSYLAGHVARIGHRGLVAALAEHDLRLPHFAVLTGLSDFGPLAQHALADRLGLNRSHLVGYLDLLERRGFVRRERDPADRRRQRAALTESGRELVRRLREVAHRSQEESLGVLSTEERRTLVELMRRVVVADDAASKEVTA
>NZ_CP009110.1|WP_167345506.1|4533326_4533515_+|hypothetical-protein
MTSGYGHRGVDYRLRPGTAVTHLVRTTDGWYDVTVSAPGLTRQLAGHVETGRLSRTDPALGA
>NZ_CP009110.1|WP_017983329.1|4533846_4534011_-|hypothetical-protein
MPLSEDEVCAAATLWGTAVEGLFVEQLLGYERGHRELLAFLEARLTAVFGDAGD
>NZ_CP009110.1|WP_020486714.1|4534772_4537205_+|sensor-histidine-kinase
MKNTDDKSGEGHHKSIRKRLTGTVLIPSIALLVMWIAGSGYFLVDAIYVRTVASSVQDVSIPAVTALGAVQQERQLSLVYLERPQVGLRDLQAQQQSIDRSLTSLRSALGEVKSLVPDEIGQRMNQMEASLDQLPVIRAEINLRTISKEQVNDFYNRLLDVSTDLFDSQARLVPDAESTQGGMTSVDIFRASDQMSRAASLASSAFASGQFAPADHLQFAQLVGSYRNQLAKIASYMAPEAGQRYRDLTSSEQWQRLTAAENSIITHGPGVFRENVGGLTVRENDWRDLTTEVSGQLISLTVEQSQLASGAALDKGNVNLWTVIIGSVVALLAAIASIWVAVRVSRTLVDRTLMTRLERLRNDSLELARTRLPSIVNRLKEGEPVDVTAELPRLDHGKDEIGQVAEAFNIAQLTAVQAAASEAKARSGVNNVFLGIAHRNQGLVHRQLQILDRMESREENPEQLKGLFQLDHLATRARRTTENLIILGGKQPGRRWRKPVWLMDVLRAAVSETEHYSRVEVENVPQVAIIGSAVADTIHLVAELVDNATTFSPPGSQVHMTSTLVARGVVVDVADQGLGMKDDVREWANRMMSEPPEFDAMALKADSSLGLFVVARLAARLGLKVMFDSSRYGGTRATILIPSALLANGDQVAENADPEFRGAPATTGTDSYEQEETGRPAGTNGMGRHENNGAAEPARRVPAELPSGRHAEPEPETASETTGVQTISVFEPEPAPAPTPSPRPKRPRAPLPQREPQQNLVAQLRDDPESDATDYHEFSGRTRNTLSAFHKGTRRGRDADAPEDPRATID
>NZ_CP009110.1|WP_017983331.1|4537226_4537652_+|roadblock/LC7-domain-containing-protein
MNENENSKVDLNWLLDDMVDRVVGAQHAVVLSADGLLMGKSANLSKDDSDQLSAIASSLQSLAKGASKHFQRGPVLQTLIEMAEGYLFVCAAGQGACLAILAEETVDVEMIAYEMSRLVKRVGDYMTSAPRDAARFVPEHN
>NZ_CP009110.1|WP_017983332.1|4537651_4538017_+|DUF742-domain-containing-protein
MADDQWYDEAAGPLIRPYAITRGRIPSVDIKLDVATQVMAIRGNHDPIGLTPEHLTILELCQRPLSVAEIAVYVKVPLAVVKVLCSDLIERGAVIVRSPSQPAKAPDRELLQAVLDGLNKL
>NZ_CP009110.1|WP_017983333.1|4537997_4538597_+|ATP-binding-protein
MASTSSEEGGVIPTPVKIVIAGGFGAGKTTMVASVSEIVPLSTEEVMTEASTGVDDLTGVERKTTTTVALDFGRITISPQTVLYLFGTPGQDRFWFMWDELALGAIGTVVLVDTRRLDSSFAAIDFFERRKIPFIVAVNCFEDSDDYEEDEIRKALAIAPGVPVMFFDARSRESSKLALIRLVRYAMSRLPAESELARA
>NZ_CP009110.1|WP_017983334.1|4538753_4540139_-|tryptophanase
MKSFPPYRVQVVKAIPITTREEREEALARAGYNMFDLPANMVTIDLLTDSGTGAVSAAQEAGAAAADRSYAGSDSWFRFKSALEDLTSFPHLFPVHQGRAAERILFSTALKPGQISLSNTHFDTTRANVELAGAEARDLPCPEAADLDSRDPFKGNIDLGALEETLSGPDGSRVGQVLITITNNGGGGQPVSMANLKAVRALCDRFGVPFFLDAARFAENSWLIIQRENGYVGKTPKEVAQETFALADGFVASLKKDAISPMGAAIGVRDEQLAKQCEAILIATEGFRTYGGLGGHDLERVAQGLQEVVDPDYLRNRAEETAHFARLINEAGVDIVQPAGVHGLYLNAGRLLQHMPPHGFPGHALACELYLAGGIRCAELGSLYLGTFDDEHNLISPAPFELVRLAIPRRTYTLAHLEYVADVLASIAKNPESVPEYRVTHAPQLLRHFNLKLRQVPRTVS
>NZ_CP009110.1|WP_017983335.1|4540159_4541200_-|tryptophan-dimethylallyltransferase
MAGFPDGGRDAVDVLRELLGAAGRRPLTEPPLWPSDVADDATPVEFSVAFDESGDRAVRILGETIAENPGPAANIEAAKRFLAHMAQWFDLRLDRFAAVEDLFLVDRPQGKFTLWFSVILRPGRAPALKVYFNPLVRGQGAARGLVAEGLRRLGLSDAYDTVAEHALLRGSADQFSFFALDLDDGPLSRVKLYISHDSADSGTVERAAGAVEGVDPLLVRDFLTTAGGGPGPYAGRPLISSYSFVEADAGRPGNYSLYLPIRDYVPDDAVAREHVLAHFARSGLPGAELDRAIAAVTGRPAAAGVGLIAHVSLRLGRFGSGTTVYLSSEAYAVQAPRGRVSASATF
>NZ_CP009110.1|WP_017983337.1|4543234_4544098_-|p-hydroxycinnamoyl-CoA-hydratase/lyase
MNTAAGNGRVRTEPWGDTVLVEFDEGIAWVTLNRPDKRNAMNPTLNDEMVRVLDHLEGDDRCRVLVLTGAGESFSAGMDLKEYFREVDATGSTAVQIKVRRASAEWQWKRLANWSKPTIAMVNGWCFGGAFTPLVACDLAFADEDAQFGLSEVNWGIPPGGVVSRALAATVPQRDALYYIMTGEPFDGRRAAEMRLVNEALPADRLRERTREVALKLSSMNQVVLHAAKTGYKIAQEMPWEQAEDYLYAKLDQSQFADKAGARAKGLTQFLDQKSYRPGLSAFDPEK

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Crispr_ID: NZ_CP009110_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009110_8

5020779-5020928

Orphan

Consensus_repeat	Method
CTGCGCCTCGCCCCGCGAGGCCGCCTCGTCCTTGGGCTGCCGCTGGGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009110_8

>merge|NZ_CP009110|8|5020779-5020928|CRISPRCasFinder
CTGCGCCTCGCCCCGCGAGGCCGCCTCGTCCTTGGGCTGCCGCTGGGGCAGACCACTGTCGGCGGGCTTGGGCTGCCGCTGCGGCAGGCCACTTGCCGACTGCGCCTCGCCCCGCGAGGCCGCCTCGTCCTTGGGCTGCCGCTGGGGCAG

>NZ_CP009110|8|8|5020779-5020928|CRISPRCasFinder
CTGCGCCTCGCCCCGCGAGGCCGCCTCGTCCTTGGGCTGCCGCTGGGGCAG	ACCACTGTCGGCGGGCTTGGGCTGCCGCTGCGGCAGGCCACTTGCCGA
CTGCGCCTCGCCCCGCGAGGCCGCCTCGTCCTTGGGCTGCCGCTGGGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009110.1\|WP_017983797.1\|5018260_5018872_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_CP009110.1\|WP_017983796.1\|5014859_5018096_-\|methylmalonyl-CoA-mutase-family-protein	unknown	unknown	gnl\|CDD\|239650
NZ_CP009110.1\|WP_017983809.1\|5031496_5031979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017983807.1\|5030056_5030449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226944
NZ_CP009110.1\|WP_017983801.1\|5025321_5025741_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP009110.1\|WP_017983793.1\|5012747_5013689_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274464
NZ_CP009110.1\|WP_017983792.1\|5012289_5012742_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|273298
NZ_CP009110.1\|WP_017983789.1\|5008851_5010525_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP009110.1\|WP_017983802.1\|5025746_5027345_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NZ_CP009110.1\|WP_017983799.1\|5019585_5020026_-\|dynein-regulation-protein-LC7	unknown	unknown	gnl\|CDD\|214939
NZ_CP009110.1\|WP_026153329.1\|5028856_5029720_+\|spermidine-synthase	unknown	unknown	gnl\|CDD\|223498
NZ_CP009110.1\|WP_081617722.1\|5018852_5019314_-\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_CP009110.1\|WP_017983804.1\|5028495_5028876_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|274523
NZ_CP009110.1\|WP_017983795.1\|5013975_5014737_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP009110.1\|WP_017983806.1\|5029685_5030042_-\|DUF3817-domain-containing-protein	unknown	unknown	gnl\|CDD\|378962
NZ_CP009110.1\|WP_017983803.1\|5027357_5028506_+\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NZ_CP009110.1\|WP_017983810.1\|5032281_5032449_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009110.1\|WP_017983790.1\|5010517_5010784_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP009110.1\|WP_017983808.1\|5030472_5031369_-\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|225501
NZ_CP009110.1\|WP_017983791.1\|5010802_5012293_-\|PTS-fructose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|236740

Protein	Function_ID	Function_description	E-value
NZ_CP009110.1\|WP_017983797.1\|5018260_5018872_-\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.83184e-44
NZ_CP009110.1\|WP_017983796.1\|5014859_5018096_-\|methylmalonyl-CoA-mutase-family-protein	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
NZ_CP009110.1\|WP_017983807.1\|5030056_5030449_-\|hypothetical-protein	gnl\|CDD\|226944	COG4578, GutM, Glucitol operon activator [Transcription].	1.71189e-13
NZ_CP009110.1\|WP_017983801.1\|5025321_5025741_+\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	4.97191e-32
NZ_CP009110.1\|WP_017983793.1\|5012747_5013689_-\|1-phosphofructokinase	gnl\|CDD\|274464	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.	1.26081e-111
NZ_CP009110.1\|WP_017983792.1\|5012289_5012742_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|273298	TIGR00848, Includes:_Phosphotransferase_enzyme_IIA_component, PTS system, fructose subfamily, IIA component. 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	1.33224e-42
NZ_CP009110.1\|WP_017983789.1\|5008851_5010525_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	1.40558e-157
NZ_CP009110.1\|WP_017983802.1\|5025746_5027345_+\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	7.23545e-173
NZ_CP009110.1\|WP_017983799.1\|5019585_5020026_-\|dynein-regulation-protein-LC7	gnl\|CDD\|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	1.98202e-21
NZ_CP009110.1\|WP_026153329.1\|5028856_5029720_+\|spermidine-synthase	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	7.23336e-29
NZ_CP009110.1\|WP_081617722.1\|5018852_5019314_-\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	4.1428e-28
NZ_CP009110.1\|WP_017983804.1\|5028495_5028876_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	4.29039e-41
NZ_CP009110.1\|WP_017983795.1\|5013975_5014737_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	9.7895e-80
NZ_CP009110.1\|WP_017983806.1\|5029685_5030042_-\|DUF3817-domain-containing-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	6.51069e-28
NZ_CP009110.1\|WP_017983803.1\|5027357_5028506_+\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	6.39298e-147
NZ_CP009110.1\|WP_017983790.1\|5010517_5010784_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	2.60752e-26
NZ_CP009110.1\|WP_017983808.1\|5030472_5031369_-\|murein-transglycosylase	gnl\|CDD\|225501	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane].	5.01007e-18
NZ_CP009110.1\|WP_017983791.1\|5010802_5012293_-\|PTS-fructose-transporter-subunit-IIBC	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	4.71496e-118

>NZ_CP009110.1|WP_017983799.1|5019585_5020026_-|dynein-regulation-protein-LC7
MTTPQPQNQFGWLVNDFAERVPGVAHAVVVSADGLLLTASNRLPLDRADQLAAVASGLVSLTQGAARCFEAGAVNETVVEMELGIMILMSISDGSCLAVLAAPNCDIGQVAYEMTMLVDRVGQILTPELRAQLQGAAGPLIGEPVG
>NZ_CP009110.1|WP_081617722.1|5018852_5019314_-|DUF742-domain-containing-protein
MFDSSPGSGFFEPVQPAQPSRPVPFRREEPEIHPAEETAVVRPYALTGGRTKARVALELETLISVQDAVLARLDAGALTVQFEHRSIMEECRTPRSVAEIAALLRVPIGVARVLISDAADAGLVTVHRTMSTNDDAEAHLMLMERVLSGLRRL
>NZ_CP009110.1|WP_017983797.1|5018260_5018872_-|ATP-binding-protein
MDSVGFKAPRQTAPQTMTSAKIVVAGGFGAGKTTFVGSVSEIVPLTTEAMMTDASRGIDNLDQTPNKATTTVAMDFGRVSLDSDLILYLFGTPGQQRFWFMWDDLVKGAIGAVVLADTRRLADSFAPVDFFEDRRLPYIIGVNTFDGQLHHELSDVREALAIDESIPIVRCDARDRESTKQTLITLVEYAMRQWIAMRAAGTR
>NZ_CP009110.1|WP_017983796.1|5014859_5018096_-|methylmalonyl-CoA-mutase-family-protein
MNASLHRPVHPVRFVTASSLFDGHDASINIMRRILQSQGAEVIHLGHNRSVDEVVTAAISEDAHGIAISAYQGGHVEYFSYLVELLNERGAGHIKVYGGGGGVIVREEIELLHSRGVARIFSPDDGLQLGLPGMVNLMIKECDYDLAAVPAGSDDDLLAGDVPSLARFITQLQAGSVADDRLARITEAARARTVPVLGITGTGGSGKSSLTDELLRRFRLDQEDKLRIAVLAVDPTRRRGGGALLGDRIRMNGLDGSQVYFRSLATRQAGGEVPEGLDEAVLACKAAGYDLVIVETPGIGQGDAGIVDHVDYSLYVMTPEFGAASQLEKIDMLDFADVVAINKFERRGAEDARRDVARQMVRNREAFGVAPEDMPVFGTSAARFNDDGVTALYQYLRDALAERGLSVSAGQLPKVETKVSTGASVIIPPSRERYLADIAATVRGYHEKTRDQVAAVRKVDQLRAAKEALAADGADTGPIEELLAKAESEVDPSVAGLLERWDELSESYRQEELVVRIRDKELRTQLWRETLSGNRIPRVALPRYTDRGELLSFLRREHLPGYFPYTAGVFPFKREGEDPARMFAGEGDAFRTNRRFKYLSADSEAKRLSTAFDSVTLYGHDPDTRPDIYGKIGTSGVSIATLDDMKALYDGFDLTAPNTSVSMTINGPAPTILAFFLNTAIDQRMDAFRAEHGREPTPSEAEDLREWTLRQVRGTVQADILKEDQGQNTCIFSTEFSLRMMADIQEWFIEHGVRNFYSVSISGYHIAEAGANPISQLAFTLANGFTYVESYLARGMHIDDFAPNLSFFFSNGMDAEYSVLGRVARRIWAVAMKERYGANERSQKLKYHVQTSGRSLHAQEMSFNDIRTTLQALCALYDNANSLHTNAYDEAITTPTENSVRRAMAIQMIINKEWGLSKNENPLQGSFIIDELTDLVEEAVLTEFDRIAERGGVLGAMETGYQRGRIQDESMLYERLKHEGTLPIVGVNTFRNPHPEEDEVEVELARATEEEKQSQLTRLADFQQRHGHDAEQALKALREAATRGENLFGVLMDAARVCSLGQITEAFFEVGGQYRRNI
>NZ_CP009110.1|WP_017983795.1|5013975_5014737_-|DeoR/GlpR-transcriptional-regulator
MYAEERQQQIVERARSLGRVDVSWLAANFEVTTETVRRDLTVLERQGVLRRVHGGAIPVERLGFEPGLADRDAVMTAEKERIAKAALAEVPDEGAILLDAGTTTARLAEILPADRELTVVTNAVSVVPQLALRPQLTVLLLGGRVRGRTLAAVEDWTLRALADTFVDVAFVGTNGISAERGLTTPDIGEAAVKRAMIRAARRTVVLADHTKVGNDCLARFGELSEVDKFVTDTGLDDGLAEDLRAAGPEVVLA
>NZ_CP009110.1|WP_017983793.1|5012747_5013689_-|1-phosphofructokinase
MIVTVTPNPSLDHTVEVDSLRRGEVLRAGPSRLDPGGKGVNVARALAAHGRKTAAVLFAGGADGRRLTELLDEQGVAVRQVPIDGDTRTNITLAEPDGVVTKLNLPGPRCSDADAEALLQAALGACEDGTVWLAGCGSLPPGAPRDTYARLVRRGHEAGLRVAVDSSGAALDRSLTAGPDLVKPNREELAACAGMPVHTLGDAVVAARVLRSRGAQTVLASLGPDGAVLVDDGAALHGEAPVPVARSTVGAGDALLAGFLAAGGAGRDALARALAWGAAAAALPGSRMPAPADVARIGVTIHPSVDADRELKE
>NZ_CP009110.1|WP_017983792.1|5012289_5012742_-|PTS-transporter-subunit-EIIA
MAELITADLVDLDVPGTDRAEVTAGLARRLVAAGRVTDLDGFLADIRKREEQMPTGIEGGIGIPHARSAFVTEPTLAFGRSAAGVDFGASDGPARLIFLIAAPEGGGEEHMTILAQLARRLVHQSFRQSLLDAPDADAVVQLVRQEVLGR
>NZ_CP009110.1|WP_017983791.1|5010802_5012293_-|PTS-fructose-transporter-subunit-IIBC
MKFVAVTSCPTGIAHTYMAAEALEQAAKAAGHEMTVETQGAAGSAPLDAARIAEADAVVFAADVDVRDRERFAGKPTVTAGVKAAINDGAGLIAQAVKAAEDGTAPAAPSAPGPELASKVDGSAGVGTRLRQWLMTGVSYMIPFVAAGGILIALSFLIGGPEVAAKVGGGDFQGVTYPGIENVSDLMSQAGIAGVLFKIGSLAFEMLVPILSGFIAFGMADRPGIAPGVVGGLLATATGAGFLGGLVSGLLAGAVTLGLKKLKVPRGVAGVMPVVVIPLVSTLVVGFLMVVVVGEPIAAAQTGLSNWLSGLSGGSAWVLGALLGLMMAFDMGGPVNKVAYTFGLAALASGNYVIMAAVMAAGMTPPLGLALATLVRRNRFTPAERQAGQAGWLLGLSFITEGAIPFAAGDPFRIIPSLMVGSATTGALVAAFGATSPAPHGGIWVVGLIGNPLLFLLAVAIGTLVTCGCVLLAKSIGRDRAPAAATPETSTQAVAA
>NZ_CP009110.1|WP_017983790.1|5010517_5010784_-|HPr-family-phosphocarrier-protein
MPERRVVVGSTVGLHARPAALFVKAAAAQPVPVSIGKDGADPVDARSILSVLGLGARGGDEVVLSADGPQAEQALDELAAIVAANHDG
>NZ_CP009110.1|WP_017983789.1|5008851_5010525_-|phosphoenolpyruvate--protein-phosphotransferase
MGEVVLRPVTGIGVSPGVAHGPVARLAEPPRLPEADAPETDVPGAVERARVALAEVAAFLDERSAQAGGAAADVLLAQSMMVADPALVDRIRARLEDGRGLAHAVADAFAGFRDALTAAGGYLAERAADVDDLRDRTVARILGVPMPGVPDPGHPFVLVARDLAPADTAVLDARRVRAIVTELGGPTSHTAILAKSLGIPAVVACAGAASLTDGTPVLVRGATGEVVVDPAASLVEAAEAEAAEQAAAVAASSGPGRTADGVPVALLVNVGAARDLAAAAAADSEGVGLLRTEFLYLDRADEPSVEEQRRSYAEVFQAFGGRKVVVRTLDAGADKPLAFVDHGDEPNPALGVRGLRLARRHPRMLADQLTAIAAARDGSTAEVWVMAPMVSTPAEAAEFAGAARAHGLPVAGTMVEVPAAALRAGAILGACDFVSIGTNDLGQYTFAADRMAGELADLLDPWQPALLELVRATGAAGRAAGKPVGVCGEAASDPLLALVLVGLGVTSLSMASSALPAVRLALAAHTAAECAELAQLALSAPDAASARERVAAAAGAG
>NZ_CP009110.1|WP_017983801.1|5025321_5025741_+|DUF485-domain-containing-protein
MQNVARTAARNPVEDTGQMRPLFGSSPTTPEPPGPRRRTGPDFVAIQRSEEFSALRSRFRRFVFPMSLAFVLWYLVYVLLAAYAHSFMSIKVFGEVNVGIVLGILQFVSTAAITAAYLRFARRRIDPEVDEVRRQAGVQ
>NZ_CP009110.1|WP_017983802.1|5025746_5027345_+|cation-acetate-symporter
MNHLLSAGGATAASNPVLNIAVFALFVAITLFVVYRVSSRNSSRSDYYAAGSAFTGRQNGIALSGDFLSAASFLGIAGAIAVHGYDGFLYSIGFLVAWLVDLLLIAELLRNTGRFTMGDVLSFRMKQRPVRAAAATSTLVISLFYMLAQMAGAGGLIALLLNIHGGLGQALIIAVVGVVMVLYVLVGGMKGTTYVQIIKASILILSAVLMTVFLFGKFGFSLSNLLSQAAYHSPMGGKLLEPGGQYGANGTTKLDFVSLAVALILGAAALPHVLMRFYTVPNSHEARRSVVWATACMFVFYLCTLVIGFGAAALVGTDEIKAAPGGENSAAPLLALHIGGTLLLGILAAVAFATILAVVAGLTLTASASFAHDVYANIFKRGHADPVDEVRVARLTAIGIGVLAIIGGILANGQNIAFLVALAFAVAASANLSTLLYSLFWKRFNTTGTLWAIYGGLGACLVLVIFSPVVSGSPDSIIKGVDFHWFPLKNPGLVSIPFSFLCGFLGTILAKDKADPRKHAEMEVRSLTGIGS
>NZ_CP009110.1|WP_017983803.1|5027357_5028506_+|type-III-PLP-dependent-enzyme
MSVERIRRFLSEAGPGTPCLVVDTDTVAERVRELVREFPHARLRYAVKANPEPAVLRAVLGAGGGCDVASPAEIEACLAAGAEPAALSYGNTIKKPADIAFAWARGVRDFTTDAPGDLAALAEHAPGASVSVRILVDGPASATPFGQKFGCEPDQAADLLAEADRLGLDPAGIAFHVGSQQPDPAAWEAGVAAAAKIFADCAARGVRLRRLNIGGGFGITYRDAVPSLAGYARAIRSAVAAYFPDEPEVLFEPGRAVVAEAGLIRTEVVLVATRFGRRWVYLDVGRYNGLAETENEAIPYRLEPVDRGGERGPVVLAGPTCDGDDVLYQRTPYELPLSLRAGDRIDILDAGAYTASYSSVAFNGIPPLRTYCLEGGTLADGA
>NZ_CP009110.1|WP_017983804.1|5028495_5028876_+|adenosylmethionine-decarboxylase
MAREIGAFTGRHVLAELRGIAPGLLDDPAFLREALRSAVTEAGATVREVVGHRFEPQGVTVLALLAESHASVHTYPEIGAVFADVFTCGDQADPVLAVRLLSAALDAADVEMSVVERGEKHVTADR
>NZ_CP009110.1|WP_026153329.1|5028856_5029720_+|spermidine-synthase
MSRQIVEPLGPGLSRVWDVSEVLFDEHTGFQRLLIGRTAQGVSLFCDDERQSTEASQLVYHEALMVPAMLLAARLRRVLIIGSSEGVASQLAVSFGAEQVDHVDIDRVAVRACAELLPYGYTLGELEAAERGEGPIRVHYQDGFSFVESSPGGYDLVVIDLPDENTDPAAQHNRLYGADFLRRCAGLLAPGGVVCCQGGCPTLWRNDTLRVAWARFREVFATPVYFGSDEHEWAFLSGRTDELADPVGDMVSRLDGFRPATMDADTLRGSTVVPYSLRACDRTARGA
>NZ_CP009110.1|WP_017983806.1|5029685_5030042_-|DUF3817-domain-containing-protein
MVDTEEREGAAAAKAAPALRGPLLRYRVLAYVTGVALLLLTAAFILKYAFDSPGMMSWAGVSHGVFYMVYLVFAVDLALKARWSIKGTILVLLAGTIPFLSFVAERSVTHRVQSGRKL
>NZ_CP009110.1|WP_017983807.1|5030056_5030449_-|hypothetical-protein
MPTGLFTPRRIAIGVLCVAAFAVCCGLAWWQWNRFESASGSFQNLGYVLQWPLFGVFPAFMVWRIWKLRREAAAQEDAEPAESRAEWGRKPVSEVPSPRTRQVPVDDQDDELAAYNRYLAELHARDQRES
>NZ_CP009110.1|WP_017983808.1|5030472_5031369_-|murein-transglycosylase
MDTEQIEHDPADVSTEEETAAPPARRRAAPAVLGRLAVVVVVLAAAVGGVWATSAVTRPDRTETTTEIPDLDNAAAQVAPGSAAPVNATVEGAPAAQTQPQQQPQQRQESGGGDLLSQWAAKVSDVTGIPARALVAYGNAELEMRAAQPKCRLSWATLAGIGRVESNHGQYGGAVLQANGLPSKAIVGVPLDGSPGIRAIGDSDGGRFDGDPVYDRAVGPMQFLPSTWARYGGGYNPQQIDAAALAAAKYLCVGGRDMASANGWWAGILSYNNSVDYGQKVFGLADAYAKAAQVVKVS
>NZ_CP009110.1|WP_017983809.1|5031496_5031979_-|hypothetical-protein
MTGDPGVDAVIAQWASELERTPEEMEADRIASAWLAELPQQPPGIPGQRARTGTRTWKPVESADPDYLDAMQERLPEVPVDLLVAAAGWWQMVGDIEEAKAWWDAGISPLDQRALDYRSAGLTPSDLSRRLGPMTVLQHLRRGSAPAWCVARLARQQRAS
>NZ_CP009110.1|WP_017983810.1|5032281_5032449_-|hypothetical-protein
MSANTKKIVIVAVVALVLFFLITRPTESAEVVRGALGWLRDGAEAIVTFVRSLFS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	402374-402398	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2550541-2550565	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	890629-890653	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	742878-742902	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	890636-890660	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	708595-708619	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1410701-1410725	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	644782-644806	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	644772-644796	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	877827-877851	3	0.88
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	700597-700621	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	551361-551385	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1168173-1168197	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_010408	Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, complete sequence	33605-33629	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	272471-272495	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1261714-1261738	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	CP000620	Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence	82852-82876	4	0.84
NZ_CP009110_1	1.1\|863955\|25\|NZ_CP009110\|CRISPRCasFinder	863955-863979	25	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	313176-313200	6	0.76

1. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgctcgccgcggcgcggggcgag	Protospacer
********** * **********.*

2. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

gctgc-tcgcctccgcgcggggcggg	CRISPR spacer
-cggcatcgcctccgcgcggggcggt	Protospacer
 * ** *******************

3. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

4. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

5. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

6. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

7. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgctcgccgcggcgcggggcgag	Protospacer
********** * **********.*

8. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

9. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

10. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgcccgcctccgcgcgcggcgcg	Protospacer
*****.************ **** *

11. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
tctgctcgccttcgcgcggggcgta	Protospacer
 **********.*********** .

12. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
cgtgctcgccgccgcgctgggcggg	Protospacer
  ******** ****** *******

13. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
actgctcgccgccgcgcggggcctg	Protospacer
.********* ***********  *

14. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_010408 (Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgctcgccatcgcgcggggcgcc	Protospacer
********** .***********

15. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
catgctcgcctcggcgcgggccggg	Protospacer
  ********** ******* ****

16. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
cgtgctcgccgccgcgctgggcggg	Protospacer
  ******** ****** *******

17. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to CP000620 (Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence) position: , mismatch: 4, identity: 0.84

gctgctcgcctccgcgcggggcggg	CRISPR spacer
gctgctcgccctcgcgcggggcgac	Protospacer
**********..***********.

18. spacer 1.1|863955|25|NZ_CP009110|CRISPRCasFinder matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 6, identity: 0.76

gctgctcgcctccgcgcggggcggg	CRISPR spacer
cctgctcgcctccgcgcgggagttc	Protospacer
 *******************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage