CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007680	Brucella abortus strain BDW chromosome 2, complete sequence	1 crisprs	DEDDh,cas3,csa3	0	0	0	0
NZ_CP007681	Brucella abortus strain BDW chromosome 1, complete sequence	0 crisprs	WYL,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007680_1

428732-428832

Orphan

Consensus_repeat	Method
GGGCGGCATGGACTTCTAAGAAGTCCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007680_1

>merge|NZ_CP007680|1|428732-428832|CRISPRCasFinder
GGGCGGCATGGACTTCTAAGAAGTCCATAAAGCTCGCCCATGAACTAAATGCCTGCGCCGCAAAGCGGCGCGGGGGCGGCATGGACTTCCAAGAAGTCCAT

>NZ_CP007680|1|1|428732-428832|CRISPRCasFinder
GGGCGGCATGGACTTCTAAGAAGTCCAT	AAAGCTCGCCCATGAACTAAATGCCTGCGCCGCAAAGCGGCGCGG
GGGCGGCATGGACTTCCAAGAAGTCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007680.1\|WP_002967192.1\|419286_419847_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP007680.1\|WP_002967189.1\|437584_438241_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP007680.1\|WP_002966379.1\|418759_419233_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP007680.1\|WP_002966396.1\|436848_437466_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP007680.1\|WP_002972151.1\|429502_429757_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007680.1\|WP_002967191.1\|429906_431298_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP007680.1\|WP_002968994.1\|439489_440317_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NZ_CP007680.1\|WP_002972147.1\|425393_426242_-\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP007680.1\|WP_002966383.1\|424316_425306_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP007680.1\|WP_002972153.1\|434090_435221_-\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NZ_CP007680.1\|WP_002966378.1\|416873_418619_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP007680.1\|WP_002967190.1\|435229_436738_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP007680.1\|WP_002966377.1\|416329_416893_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP007680.1\|WP_002966391.1\|431400_431802_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP007680.1\|WP_002966392.1\|432087_433326_+\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP007680.1\|WP_002966382.1\|421054_423973_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP007680.1\|WP_002966393.1\|433398_434094_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NZ_CP007680.1\|WP_002966386.1\|426722_427019_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP007680.1\|WP_002969286.1\|414699_416244_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP007680.1\|WP_002971287.1\|420191_420863_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007680.1\|WP_002967192.1\|419286_419847_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	7.89145e-52
NZ_CP007680.1\|WP_002967189.1\|437584_438241_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NZ_CP007680.1\|WP_002966379.1\|418759_419233_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NZ_CP007680.1\|WP_002966396.1\|436848_437466_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.51794e-45
NZ_CP007680.1\|WP_002967191.1\|429906_431298_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP007680.1\|WP_002968994.1\|439489_440317_+\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	3.08102e-178
NZ_CP007680.1\|WP_002972147.1\|425393_426242_-\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51221e-90
NZ_CP007680.1\|WP_002966383.1\|424316_425306_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NZ_CP007680.1\|WP_002972153.1\|434090_435221_-\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
NZ_CP007680.1\|WP_002966391.1\|431400_431802_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
NZ_CP007680.1\|WP_002967190.1\|435229_436738_-\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	1.42841e-158
NZ_CP007680.1\|WP_002966377.1\|416329_416893_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NZ_CP007680.1\|WP_002966392.1\|432087_433326_+\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18971e-166
NZ_CP007680.1\|WP_002966382.1\|421054_423973_-\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP007680.1\|WP_002966393.1\|433398_434094_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
NZ_CP007680.1\|WP_002966386.1\|426722_427019_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NZ_CP007680.1\|WP_002969286.1\|414699_416244_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.11164e-117
NZ_CP007680.1\|WP_002966378.1\|416873_418619_-\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.08227e-83

>NZ_CP007680.1|WP_002966386.1|426722_427019_+|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP007680.1|WP_002972147.1|425393_426242_-|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRARNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NZ_CP007680.1|WP_002966383.1|424316_425306_-|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NZ_CP007680.1|WP_002966382.1|421054_423973_-|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NZ_CP007680.1|WP_002971287.1|420191_420863_-|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NZ_CP007680.1|WP_002967192.1|419286_419847_-|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWALLAAIVGHVAMALVYHFALRDDTLRYMTGHGTPN
>NZ_CP007680.1|WP_002966379.1|418759_419233_+|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NZ_CP007680.1|WP_002966378.1|416873_418619_-|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDWDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NZ_CP007680.1|WP_002966377.1|416329_416893_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NZ_CP007680.1|WP_002969286.1|414699_416244_-|insulinase-family-protein
MNTPHSGCLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAPAALPEIFRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANAKPGDAPALDLLSEILGGSQLSQLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ
>NZ_CP007680.1|WP_002972151.1|429502_429757_+|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDNKTQRKIEPTAWIRETDDDESQED
>NZ_CP007680.1|WP_002967191.1|429906_431298_+|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALVSGLVSEEDYDRLVRAERMIAPQ
>NZ_CP007680.1|WP_002966391.1|431400_431802_+|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NZ_CP007680.1|WP_002966392.1|432087_433326_+|sugar-MFS-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKPPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NZ_CP007680.1|WP_002966393.1|433398_434094_-|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NZ_CP007680.1|WP_002972153.1|434090_435221_-|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NZ_CP007680.1|WP_002967190.1|435229_436738_-|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYYLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWLESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NZ_CP007680.1|WP_002966396.1|436848_437466_-|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPKVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NZ_CP007680.1|WP_002967189.1|437584_438241_-|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NZ_CP007680.1|WP_002968994.1|439489_440317_+|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1240437 : 1252365

uncultured_Mediterranean_phage(90.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002969969.1\|1240437_1242765_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5
WP_002964021.1\|1242883_1243225_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_002964020.1\|1243385_1244252_+	ATP-binding protein	NA	NA	NA	NA
WP_002964019.1\|1244300_1245599_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964018.1\|1245647_1245833_-	hypothetical protein	NA	NA	NA	NA
WP_002964017.1\|1245977_1246646_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-13	37.8
WP_002966786.1\|1246642_1247410_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_002964015.1\|1247558_1248842_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_002964014.1\|1248918_1249743_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002969412.1\|1249739_1250321_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964012.1\|1250431_1250650_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_002964011.1\|1250795_1251521_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002968731.1\|1251513_1252365_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5

DBSCAN-SWA_2

1476287 : 1584573

Hokovirus(10.53%)

protease,tail,head,capsid,holin,integrase,transposase,portal

attL 1467132:1467146|attR 1480530:1480544

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1467132:1467146	attL	NA	NA	NA	NA
WP_002967515.1\|1476287_1477214_+\|integrase	site-specific integrase	A0A076YL28	Mesorhizobium_phage	2.9e-28	36.3
WP_002963782.1\|1477576_1478710_+	pyridoxal phosphate-dependent aminotransferase	A0A1X7QHI1	Faustovirus	9.1e-16	23.9
WP_002963781.1\|1478727_1479102_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_002963780.1\|1479146_1479797_-	hypothetical protein	NA	NA	NA	NA
WP_154018645.1\|1480120_1480393_+	hypothetical protein	NA	NA	NA	NA
WP_002963779.1\|1480452_1481223_+	YitT family protein	NA	NA	NA	NA
1480530:1480544	attR	NA	NA	NA	NA
WP_002963778.1\|1481282_1481540_-	hypothetical protein	NA	NA	NA	NA
WP_002969438.1\|1481809_1482043_+	hypothetical protein	NA	NA	NA	NA
WP_002963776.1\|1482039_1482387_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_002963775.1\|1482445_1483156_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA
WP_002963772.1\|1483722_1485225_+	AMP nucleosidase	NA	NA	NA	NA
WP_006079440.1\|1485277_1486354_+	hypothetical protein	NA	NA	NA	NA
WP_002963770.1\|1486469_1488161_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_002963769.1\|1488549_1489422_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_002970986.1\|1489583_1490840_+	MFS transporter	NA	NA	NA	NA
WP_002963767.1\|1490844_1491804_-	DMT family transporter	NA	NA	NA	NA
WP_002966728.1\|1492029_1494681_+	aminopeptidase N	NA	NA	NA	NA
WP_002963765.1\|1495071_1497423_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	6.3e-27	34.8
WP_002966727.1\|1497693_1499805_+	hypothetical protein	NA	NA	NA	NA
WP_002963763.1\|1499849_1502801_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
WP_002966726.1\|1502923_1504330_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_002963761.1\|1504326_1505034_-	response regulator transcription factor	NA	NA	NA	NA
WP_002963760.1\|1505127_1506669_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-28	29.8
WP_002963759.1\|1506810_1507287_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_002963758.1\|1507283_1509275_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_002963757.1\|1509294_1509792_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_002969443.1\|1509788_1510928_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_002971524.1\|1511028_1511481_-	hypothetical protein	NA	NA	NA	NA
WP_002969444.1\|1511574_1512885_-	hypothetical protein	NA	NA	NA	NA
WP_002963753.1\|1512959_1513649_-	response regulator transcription factor	NA	NA	NA	NA
WP_002971526.1\|1513727_1514024_-	hypothetical protein	NA	NA	NA	NA
WP_002969445.1\|1514185_1514392_-	hypothetical protein	NA	NA	NA	NA
WP_002963749.1\|1518323_1518746_-	peptidase P60	NA	NA	NA	NA
WP_002963747.1\|1519613_1520246_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	2.9e-48	47.6
WP_002970984.1\|1520248_1520794_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	2.8e-07	46.4
WP_002963745.1\|1520798_1520969_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_002963744.1\|1521012_1521354_-	gene transfer agent family protein	NA	NA	NA	NA
WP_002963743.1\|1521350_1521764_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_006072374.1\|1521804_1522212_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002963741.1\|1522334_1522673_-\|head	phage head closure protein	NA	NA	NA	NA
WP_002963740.1\|1522669_1523236_-	hypothetical protein	NA	NA	NA	NA
WP_002966724.1\|1523400_1524675_-\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-82	43.6
WP_002963738.1\|1524696_1525365_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.7e-30	41.1
WP_002963737.1\|1525351_1525729_-	hypothetical protein	NA	NA	NA	NA
WP_002963736.1\|1525725_1526919_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.0e-67	40.0
WP_002970982.1\|1526950_1528198_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	4.9e-71	40.4
WP_002963734.1\|1528136_1528649_-	hypothetical protein	NA	NA	NA	NA
WP_002969866.1\|1528988_1531163_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_002963732.1\|1531169_1531781_+	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_002963731.1\|1531773_1532316_+	hypothetical protein	NA	NA	NA	NA
WP_002969865.1\|1532513_1533590_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_002963729.1\|1533600_1533948_-	DUF1491 family protein	NA	NA	NA	NA
WP_002971535.1\|1533961_1534930_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_002969448.1\|1534904_1536734_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.7e-22	28.9
WP_002966721.1\|1537024_1537474_+	hypothetical protein	NA	NA	NA	NA
WP_002963725.1\|1537553_1537979_+	SufE family protein	NA	NA	NA	NA
WP_002966720.1\|1538019_1539336_-	amidase	NA	NA	NA	NA
WP_002969449.1\|1539446_1540241_-	hypothetical protein	NA	NA	NA	NA
WP_002966719.1\|1540237_1540693_-	hypothetical protein	NA	NA	NA	NA
WP_002969861.1\|1540873_1541185_+	hypothetical protein	NA	NA	NA	NA
WP_002963720.1\|1541392_1541821_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.0e-20	47.6
WP_002963718.1\|1542393_1544502_+	S9 family peptidase	NA	NA	NA	NA
WP_002963717.1\|1544619_1544955_+	hypothetical protein	NA	NA	NA	NA
WP_002963716.1\|1545126_1545726_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.2e-38	42.6
WP_002963715.1\|1545948_1546602_+	haloacid dehalogenase type II	NA	NA	NA	NA
WP_002971536.1\|1546603_1546846_-	hypothetical protein	NA	NA	NA	NA
WP_002963714.1\|1546904_1547621_+	L,D-transpeptidase	NA	NA	NA	NA
WP_002963713.1\|1547810_1549322_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.3
WP_002963712.1\|1549657_1550020_+	hypothetical protein	NA	NA	NA	NA
WP_002963710.1\|1551351_1552029_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_002963709.1\|1552184_1553177_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002963708.1\|1553237_1553468_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_002963707.1\|1553464_1553854_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	3.5e-07	44.6
WP_002963706.1\|1553850_1554321_-	transcription elongation factor	NA	NA	NA	NA
WP_002963705.1\|1554365_1555388_-	asparaginase	NA	NA	NA	NA
WP_002969060.1\|1555578_1556175_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_002966717.1\|1556177_1557860_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.9e-40	30.6
WP_002963701.1\|1558011_1559475_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002969452.1\|1560012_1560582_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_002971540.1\|1560488_1561007_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002963699.1\|1561268_1562300_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002966716.1\|1562332_1563784_+	xylulokinase	NA	NA	NA	NA
WP_002966715.1\|1563830_1565138_+	xylose isomerase	NA	NA	NA	NA
WP_002969454.1\|1565179_1566277_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002963695.1\|1566284_1567337_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_002969455.1\|1567394_1568357_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002963693.1\|1568435_1569437_-	ABC transporter permease	NA	NA	NA	NA
WP_002963692.1\|1569457_1570993_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-14	25.3
WP_109790518.1\|1571132_1571336_-	hypothetical protein	NA	NA	NA	NA
WP_002969456.1\|1571684_1572794_-	glycosyltransferase	NA	NA	NA	NA
WP_002963690.1\|1572876_1574049_-	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_002963689.1\|1574081_1575506_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.0e-53	30.8
WP_002963688.1\|1575576_1576932_-	phosphomannomutase	NA	NA	NA	NA
WP_002975117.1\|1577542_1577860_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144242534.1\|1577756_1578520_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-21	40.8
WP_002969843.1\|1578862_1579045_+\|transposase	transposase	NA	NA	NA	NA
WP_077281774.1\|1579279_1579432_+	hypothetical protein	NA	NA	NA	NA
WP_002963682.1\|1580189_1581308_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_002969843.1\|1584390_1584573_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007681

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection