CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007700	Brucella abortus strain NCTC 10505 chromosome 1	2 crisprs	csa3,WYL,DEDDh	0	2	1	0
NZ_CP007701	Brucella abortus strain NCTC 10505 chromosome 2	1 crisprs	csa3,cas3,DEDDh	0	0	0	0

1. NZ_CP007700

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007700_1

• CRISPR_ID: NZ_CP007700_1
• CRISPR_location: 580180-580262
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007700_1

Consensus_repeat	Method
ATCCCGAAAAGTGCGAAGCGGTTTTCGG	CRISPRCasFinder

spacers of NZ_CP007700_1

>1.1|580208|27|NZ_CP007700|CRISPRCasFinder
ATAAGATGCGCGCAAGGAAAGATCTGT

CRISPR arrays and Neighbor proteins around NZ_CP007700_1

CRISPR arrays

The CRISPR arrays of NZ_CP007700_1

>merge|NZ_CP007700|1|580180-580262|CRISPRCasFinder
ATCCCGAAAAGTGCGAAGCGGTTTTCGGATAAGATGCGCGCAAGGAAAGATCTGTATCCCGAAAAGTGCGAAGCGGTGTTCGG

>NZ_CP007700|1|1|580180-580262|CRISPRCasFinder
ATCCCGAAAAGTGCGAAGCGGTTTTCGG	ATAAGATGCGCGCAAGGAAAGATCTGT
ATCCCGAAAAGTGCGAAGCGGTGTTCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007700.1|WP_002963782.1|568637_569771_-|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl|CDD|181255
NZ_CP007700.1|WP_002963786.1|574508_575150_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007700.1|WP_002963799.1|586753_588088_+|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl|CDD|237356
NZ_CP007700.1|WP_002963802.1|590623_591199_+|DUF2062-domain-containing-protein	unknown	unknown	gnl|CDD|225757
NZ_CP007700.1|WP_002967515.1|570133_571060_-|site-specific-integrase	unknown	unknown	gnl|CDD|271177
NZ_CP007700.1|WP_002963792.1|580303_580975_-|uracil-DNA-glycosylase	unknown	unknown	gnl|CDD|381681
NZ_CP007700.1|WP_002963797.1|584879_585458_+|orotate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|273579
NZ_CP007700.1|WP_002963790.1|578718_579600_+|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
NZ_CP007700.1|WP_002963798.1|585617_586373_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|236494
NZ_CP007700.1|WP_002971501.1|589734_590574_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|380379
NZ_CP007700.1|WP_002963795.1|581977_582379_+|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl|CDD|234744
NZ_CP007700.1|WP_002963787.1|575205_575388_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007700.1|WP_002963796.1|582619_584872_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl|CDD|223394
NZ_CP007700.1|WP_002963800.1|588271_589483_-|MFS-transporter	unknown	unknown	gnl|CDD|341031
NZ_CP007700.1|WP_002963793.1|581005_581581_-|NYN-domain-containing-protein	unknown	unknown	gnl|CDD|350235
NZ_CP007700.1|WP_002963789.1|576185_578243_-|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl|CDD|381604
NZ_CP007700.1|WP_002971509.1|575466_576123_+|endonuclease	unknown	unknown	gnl|CDD|237082
NZ_CP007700.1|WP_002963791.1|579690_580167_+|SsrA-binding-protein-SmpB	unknown	unknown	gnl|CDD|235455
NZ_CP007700.1|WP_002970988.1|571333_572437_-|porin	unknown	unknown	gnl|CDD|308243
NZ_CP007700.1|WP_002971512.1|573276_574365_+|porin	unknown	unknown	gnl|CDD|308243

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007700.1|WP_002963782.1|568637_569771_-|pyridoxal-phosphate-dependent-aminotransferase	gnl|CDD|181255	PRK08153, PRK08153, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP007700.1|WP_002963799.1|586753_588088_+|oxygen-independent-coproporphyrinogen-III-oxidase	gnl|CDD|237356	PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.	0
NZ_CP007700.1|WP_002963802.1|590623_591199_+|DUF2062-domain-containing-protein	gnl|CDD|225757	COG3216, COG3216, Uncharacterized protein conserved in bacteria [Function unknown].	4.59787e-83
NZ_CP007700.1|WP_002967515.1|570133_571060_-|site-specific-integrase	gnl|CDD|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.4048e-42
NZ_CP007700.1|WP_002963792.1|580303_580975_-|uracil-DNA-glycosylase	gnl|CDD|381681	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins. Uracil DNA glycosylase family 5 includes Thermus thermophilus HB8 TTUDGB (also called UDGb) which is not only a UDG acting on double-stranded uracil-containing DNA, but also a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA (except for the C/I base pair), as well as a xanthine DNA glycosylase acting on both, double-stranded and single-stranded xanthine-containing DNA. TTUDGB also excises thymine from G:T mismatched DNA, and removes analogs of uracil from DNA, including 5-hydroxymethyluracil (hmU) and 5-fluorouracil (fU). This subfamily also contains Bradyrhizobium diazoefficiens family 5 homolog Blr5068 (UdgB) which has been found to efficiently excise uracil from ssDNA and dsDNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Similar to family 4 UDGs, members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	7.75632e-104
NZ_CP007700.1|WP_002963798.1|585617_586373_+|helix-turn-helix-domain-containing-protein	gnl|CDD|236494	PRK09391, fixK, transcriptional regulator FixK; Provisional.	1.61963e-49
NZ_CP007700.1|WP_002963790.1|578718_579600_+|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.74318e-177
NZ_CP007700.1|WP_002971501.1|589734_590574_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.72308e-33
NZ_CP007700.1|WP_002963795.1|581977_582379_+|DNA-directed-RNA-polymerase-subunit-omega	gnl|CDD|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.70484e-25
NZ_CP007700.1|WP_002963797.1|584879_585458_+|orotate-phosphoribosyltransferase	gnl|CDD|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	2.00708e-76
NZ_CP007700.1|WP_002963796.1|582619_584872_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl|CDD|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP007700.1|WP_002963800.1|588271_589483_-|MFS-transporter	gnl|CDD|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.86566e-108
NZ_CP007700.1|WP_002963793.1|581005_581581_-|NYN-domain-containing-protein	gnl|CDD|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.49979e-63
NZ_CP007700.1|WP_002963789.1|576185_578243_-|lytic-transglycosylase-domain-containing-protein	gnl|CDD|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.60661e-60
NZ_CP007700.1|WP_002971509.1|575466_576123_+|endonuclease	gnl|CDD|237082	PRK12373, PRK12373, NADH-quinone oxidoreductase subunit E.	2.3845e-28
NZ_CP007700.1|WP_002963791.1|579690_580167_+|SsrA-binding-protein-SmpB	gnl|CDD|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.57135e-88
NZ_CP007700.1|WP_002970988.1|571333_572437_-|porin	gnl|CDD|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	7.06318e-105
NZ_CP007700.1|WP_002971512.1|573276_574365_+|porin	gnl|CDD|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	8.22091e-118

Protein sequences

>NZ_CP007700.1|WP_002963791.1|579690_580167_+|SsrA-binding-protein-SmpB
MNKPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELALARGKKTHDKRETEKKRDWNREKARLLRDRG
>NZ_CP007700.1|WP_002963790.1|578718_579600_+|4-hydroxy-tetrahydrodipicolinate-synthase
MLKGSITALVTPFDREGAFDEKAFRAFVNWQIEEGTKGLVPVGTTGETPTLSHDEHKRVIEVCIEVAAGRVPVIAGAGSNNTVEAIELAQHAEKAGADAVLVVTPYYNKPNQRGLYEHFSRVARSISIPLVIYNIPGRSIIDMTPETMGALVRDCKNIVGVKDATGKIERVSEQRAICGKEFIQLSGEDATALGFNAHGGVGCISVTSNIAPRLCAEFQEACQAGNFAKALELQDRLMPLHKALFLEPNPSGPKYALSRLGRIENVLRSPMVTIEAATAEKIDHAMKHAVLIN
>NZ_CP007700.1|WP_002963789.1|576185_578243_-|lytic-transglycosylase-domain-containing-protein
MVSLAQSSLPPEIPTPLARPFAPTATHQSPISLVTPRPRPIAPDPMATSAVSRTDNPAVIGGTLKNGLDALSAKNVASAIASRNNLPRGSLDRQILTWAIATSGMDGVPSTEIAAAASELSGWPGMATLRRNSERALFKENPSSATIIATFGSTRPQTTEGMIALARAYVATGNSTKAHQLLSPWWTRKRLSSDDEQKILKEFSAILTREDHQRRLLHSLYNGRLQSARLLAGPAQAQSLYNAYAAVAQKSPNAASAIAAVDRSWQANPVYQFLKIRYLRRAERYNEAAELLLKAPRKASVLVDPDAWWVERRILSRELLDLGKPQLAYRLAAAHAAETPTMAAEAEFHAGWYALRALNQPKLAAPHFAKITQISARPISASRAYYWLGRAAEAGSGGDARAYYRRSAHFGTTFYGQLAAAKLNEKAPELAYPKPTEAERVRFASRPAVQAIKRLEQVGYGNKAAALYTQLSQELDSVGELALLAVMAERNDNHYMALRVGKTAAMRGLDVGALSHPLGAIPASANIKGSGKALAYAIARQESEFNVSAVSKAGARGLLQLMPATAKTVATRNGMSFSAQKLTADAAYNATLGAHFLGEQLDRFNGSYVLTFAGYNAGPRRASEWVEKYGDPRGKSVEQVVDWIERIPYSETRNYVQRVMENYEVYKTRLTGRADIKTDLVYGRR
>NZ_CP007700.1|WP_002971509.1|575466_576123_+|endonuclease
MPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKPEPVPPAEPVRADSDPLKRKAGLEKARIEPVEGSADSDVAAAPVLQKVPAETPDDAGRPQWREAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQWTREEAIWIERRIGFPGRVEREGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG
>NZ_CP007700.1|WP_002963787.1|575205_575388_+|hypothetical-protein
MTVFPIRPFLCYDYSAKGLKCLAKYYAESLMLYLVETFWPVLVLAILIGAATGWLTAGER
>NZ_CP007700.1|WP_002963786.1|574508_575150_+|hypothetical-protein
MKKWFWPCLTWTACLTALALWFGADRVETDIAEQTAKALEPYVWAGFYVDGRDVVLKGMAPDPDMQRAAHAALEHVWAIRDITDLTTVLQLASPYRFKIGRNAQGLVLSGFIPNNESRDQVMTAAGEVAPDIFIDDEMAVARGNQPEFMERVLFAIDLAKKLPEAEIEIVDEKLSIRGTVSDEAIYDEIEALKAAQLPYGLKLAVLDVKKSVQ
>NZ_CP007700.1|WP_002971512.1|573276_574365_+|porin
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYSGTDRNGWDKSARFALRVSTGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVIALEQGGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQKAAFNLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF
>NZ_CP007700.1|WP_002970988.1|571333_572437_-|porin
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYSGTDRNGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIAPEKATFNLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGIVRFQRSF
>NZ_CP007700.1|WP_002967515.1|570133_571060_-|site-specific-integrase
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVKVLEIH
>NZ_CP007700.1|WP_002963782.1|568637_569771_-|pyridoxal-phosphate-dependent-aminotransferase
MAQPRLTPLVESLPSTVPFIGPETLELQRGKPFEARIGANESSFGPAPSVIEAMRNEATEVWKYGDPENYALRHAIAAHHGLKAEHIMPGAGVDALLGLIVRQYVQQGDKVINSLGGYPTFNYHVAGYGGQLVTVPYRDDKPDLDALIDAAAREKPALLYIANPDNPMGTWHGGADIQSFIERLPETTLLILDEAYCETAPASAFPPFETDRPNVLRMRTFSKAYGLAGIRCGYAVGNPVAIKTFDKVRDHFAVSRMAQAAAIAALKDQAYLHEVVGKICAGRDRIAAIAEANGLHAVASATNFVAIDCGRGKDFAQAVLNGLISRDIFVRKPGTPVLDRCIRVSVGVKEQLDQFEAAFPEALEEARKICAANAENT
>NZ_CP007700.1|WP_002963792.1|580303_580975_-|uracil-DNA-glycosylase
MISEPSPNCSICPRLHAFLQEWRQKEPAWHNAPVPPFLPGSDEDVRLLIVGLAPGLRGANRTGRPFTGDYAGELLYSTLCEFGFATGKFEARPDDSLRLLDACIVNAVRCVPPENKPVGSEINNCRQFLTPMLTRFPNLDAVVTLGTIAHQSTVRALGVPVSRHPFGHGKATDIGPLRIFSSYHCSRYNTNTGVLTDAMFRDVFKNVRAYLSEKAAGSARLSV
>NZ_CP007700.1|WP_002963793.1|581005_581581_-|NYN-domain-containing-protein
MFDSREKIALFIDGANLYAASKTLGFDIDYRKLLKAFQKRGYLLRAYYYTALVEDQEYSSIRPLIDWLDYNGYKVVTKAAREFTDSTGRRKVKGNMDIELTVDAMQLTDTVDHFVIFSGDGDFRSLVEALQRKGRKVSVVSTLTTQPAMISDELRRQADHFIDLVSLKAEIGRDPSERAPRRQEEDFDESY
>NZ_CP007700.1|WP_002963795.1|581977_582379_+|DNA-directed-RNA-polymerase-subunit-omega
MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAGIEGLVAPEKNDGF
>NZ_CP007700.1|WP_002963796.1|582619_584872_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MMRQYELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKNRGLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQTIEQLSEGDNPEEFLEHTKLELFQDQVFCFTPKGRLIALPRGATPIDFAYAVHTDIGDSCVGAKVNGRIMPLMTELKNGDEVDIIRSKAQVPPAAWESLVATGKARAAIRRATRSAVRKQYSGLGMRILERAFERAGKPFSKDILKPGLPRLARKDVEDVLAAVGRGELPSADVVKAVYPDYQDTRVTTQNNPAKAGEKGWFNIQNAAGMIFKVPEGGEGAAAKVDPAATTPKPGKRALPIRGTNPDLPVRFAPEGAVPGDRIVGILQPGAGITIYPIQSPALTAYDDQPERWIDVRWDIDDQMSERFPARISVSAINSPGSLAEIAQIAAANDANIHNLSMARTAPDFTEMIIDVEVWDLKHLNRIISQLKESASVSSAKRVNG
>NZ_CP007700.1|WP_002963797.1|584879_585458_+|orotate-phosphoribosyltransferase
MNTDDVLAVFREAGAILEGHFILTSGLRSPVFLQKARVFMHADKTEKLCKALAEKIRAADLGPIDYVVGPAIGGLIPSYETSRHLGVPSVWVERENGVFRLRRFDVPKGARVVIVEDIVTTGLSIRETIDCMKDLGIEVVAAACIVDRSAGKADVGTRLISLAEYEVPAYPADKLPPELAAIPAVKPGSRNI
>NZ_CP007700.1|WP_002963798.1|585617_586373_+|helix-turn-helix-domain-containing-protein
MVVVPFALDQNQKLAARTPCNVCEDCCVRSMAVCSALDDGDLAALEAIMTSKKLDTNEMLVEEGEPKLRVYSLTSGMLRIYTSLPDGRRQIAGFLFPGDFLGLADDEVYSQSAEAVVPLALCAFSAKEMERLMERFPKLKERLYQMTRLALRTARDNQLVLGRLAPVEKLANFLLVLSARAEKRGEKPNPVHLLMNRTDIADYLGLTIETVSRSFTKLKTQGLIQLRDANTVEILSRRSLAVVAGLDPDNL
>NZ_CP007700.1|WP_002963799.1|586753_588088_+|oxygen-independent-coproporphyrinogen-III-oxidase
MHDDAIRRYAALAVPRYTSYPTAADFVPVGMDTTRRWLRQIGPEESVSLYIHVPYCSQICHYCGCNAKMAIREDVIENFVNALLGEIRTVSASLTARPRVAHLHWGGGTPSILNAGQFQTVLAAIRTAFDFDLSMEHAIELDPRTVTPLLAKTLAEMGVNRASLGVQDVDSRVQMAIGRVQPIETVAEATRLLREVGINRINFDLIYGLPLQTVETLRETCERVVTLSPDRVACYGYAHLPQRRANQRLIDENTLPDADERFRQARIVTDSFIGFGYQPVGIDHFALPDDDLAIAAREGTLNRNFQGYTNDRCGTLIGFGPSSISQFPGGYAQNISDVGQYRKRVEAGELATVRGYTLRDTDRIRSAIISALMCNFCVDLNAVAPGMEFSDEFALLRPLVADGLVAVEGRTIRATENGKSLIRLVAAAFDEFRRDSVDGFSFAV
>NZ_CP007700.1|WP_002963800.1|588271_589483_-|MFS-transporter
MSVSAAQQPSNSSADNTVLTIILATSLGHFLNDMMQSLLPAIYPMLKENYSLSFWQIGLLTFTFQMTASILQPLVGIYTDRKPMPYSLTFGMGCTLIGLVFLATAHHYSFLLLGAACVGFGSSVFHPEAARVARLASGGRHGFAQSLFQVGGNFGSSIGPLLAAFIVLPFGQISVSWFSVAALIGMFVLWYVGNWYNRYRLANASKPKPDKTLPLPRNRVIASVAVLALLVFTKYIYMASLTSYYTFYTISHFGVSVQTSQLLLFLFLGAVAAGSIIGGPIGDKIGARKVIWASILGVLPFTLALPYANLEMTAVLTIIIGLILASAFPAIIVFAQELLPGRVGMVSGLFFGFAFGMAGIAAAVLGIVADQKGIEFVYRICSYLPFLGLLTIFLPKLERRRKA
>NZ_CP007700.1|WP_002971501.1|589734_590574_+|helix-turn-helix-transcriptional-regulator
MPENEDLQRFHEHRIAMLESMTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGVEHSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGLVIELILRDLHTLPEYPLGLPFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTRHFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPPKFYQPRLDVAPFERSDKAAFG
>NZ_CP007700.1|WP_002963802.1|590623_591199_+|DUF2062-domain-containing-protein
MLFQRRYPPTRWERLRLYLWPRRSFSRSFRYGGKRILRITASPHAVAAGLAVGVFSAFTPFFGFHLIIAIVLAYFLAGNVAAAALGTTLANPLTLPFIWGSTFELGRFIMSGSVDSVPPVHLGHALETMRFEEVWTPLLKPMLFGSTILGAAFAVLVYFVTRYAVSVFRRRRLERLAEKHRLHRQRELQNA

Crispr_ID: NZ_CP007700_2

• CRISPR_ID: NZ_CP007700_2
• CRISPR_location: 1714670-1714758
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007700_2

Consensus_repeat	Method
TTGTCAGCAACGCCCTTGGCATTGGT	CRISPRCasFinder

spacers of NZ_CP007700_2

>2.1|1714696|37|NZ_CP007700|CRISPRCasFinder
GTCGATCCGACCGCTGTTCCGGCCAATGGCAGTCTTG

CRISPR arrays and Neighbor proteins around NZ_CP007700_2

CRISPR arrays

The CRISPR arrays of NZ_CP007700_2

>merge|NZ_CP007700|2|1714670-1714758|CRISPRCasFinder
TTGTCAGCAACGCCCTTGGCATTGGTGTCGATCCGACCGCTGTTCCGGCCAATGGCAGTCTTGTTGTCGGCAACGCCCTTGGCATTGGT

>NZ_CP007700|2|2|1714670-1714758|CRISPRCasFinder
TTGTCAGCAACGCCCTTGGCATTGGT	GTCGATCCGACCGCTGTTCCGGCCAATGGCAGTCTTG
TTGTCGGCAACGCCCTTGGCATTGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007700.1|WP_002964928.1|1717076_1717505_-|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|235510
NZ_CP007700.1|WP_002969195.1|1719141_1721070_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|369778
NZ_CP007700.1|WP_002970320.1|1707856_1708756_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP007700.1|WP_002964926.1|1716010_1716661_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NZ_CP007700.1|WP_002964935.1|1722298_1722985_-|IS6-like-element-IS2020-family-transposase	unknown	unknown	gnl|CDD|225853
NZ_CP007700.1|WP_002964914.1|1704341_1704878_-|RNA-pyrophosphohydrolase	unknown	unknown	gnl|CDD|234820
NZ_CP007700.1|WP_002964927.1|1716781_1717051_-|50S-ribosomal-protein-L27	unknown	unknown	gnl|CDD|235464
NZ_CP007700.1|WP_002964925.1|1715399_1715957_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|224168
NZ_CP007700.1|WP_002964935.1|1718214_1718901_+|IS6-like-element-IS2020-family-transposase	unknown	unknown	gnl|CDD|225853
NZ_CP007700.1|WP_002964920.1|1709935_1710610_-|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|234611
NZ_CP007700.1|WP_002964932.1|1723095_1724535_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP007700.1|WP_002964915.1|1705076_1706405_-|S41-family-peptidase	unknown	unknown	gnl|CDD|223864
NZ_CP007700.1|WP_002970321.1|1710609_1711893_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685
NZ_CP007700.1|WP_002972331.1|1709401_1709773_-|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_CP007700.1|WP_002964922.1|1711902_1713039_-|glutamate-5-kinase	unknown	unknown	gnl|CDD|235460
NZ_CP007700.1|WP_002964931.1|1721740_1722079_+|AzlD-domain-containing-protein	unknown	unknown	gnl|CDD|377512
NZ_CP007700.1|WP_002964923.1|1713066_1714092_-|GTPase-ObgE	unknown	unknown	gnl|CDD|237048
NZ_CP007700.1|WP_002964916.1|1706394_1707744_-|murein-hydrolase-activator-EnvC	unknown	unknown	gnl|CDD|227278
NZ_CP007700.1|WP_002964930.1|1721066_1721741_+|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl|CDD|377070
NZ_CP007700.1|WP_002964918.1|1708873_1709383_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl|CDD|234634

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007700.1|WP_002964928.1|1717076_1717505_-|50S-ribosomal-protein-L21	gnl|CDD|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	1.70978e-47
NZ_CP007700.1|WP_002969195.1|1719141_1721070_+|helix-turn-helix-domain-containing-protein	gnl|CDD|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.58677e-14
NZ_CP007700.1|WP_002964927.1|1716781_1717051_-|50S-ribosomal-protein-L27	gnl|CDD|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.22436e-55
NZ_CP007700.1|WP_002964926.1|1716010_1716661_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.03822e-35
NZ_CP007700.1|WP_002964935.1|1722298_1722985_-|IS6-like-element-IS2020-family-transposase	gnl|CDD|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.8584e-86
NZ_CP007700.1|WP_002964914.1|1704341_1704878_-|RNA-pyrophosphohydrolase	gnl|CDD|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	1.15741e-82
NZ_CP007700.1|WP_002964925.1|1715399_1715957_-|GNAT-family-N-acetyltransferase	gnl|CDD|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.87083e-08
NZ_CP007700.1|WP_002964935.1|1718214_1718901_+|IS6-like-element-IS2020-family-transposase	gnl|CDD|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.8584e-86
NZ_CP007700.1|WP_002964920.1|1709935_1710610_-|nicotinate-nucleotide-adenylyltransferase	gnl|CDD|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.98816e-76
NZ_CP007700.1|WP_002964915.1|1705076_1706405_-|S41-family-peptidase	gnl|CDD|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.24346e-155
NZ_CP007700.1|WP_002970321.1|1710609_1711893_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP007700.1|WP_002972331.1|1709401_1709773_-|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.05797e-48
NZ_CP007700.1|WP_002964922.1|1711902_1713039_-|glutamate-5-kinase	gnl|CDD|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP007700.1|WP_002964931.1|1721740_1722079_+|AzlD-domain-containing-protein	gnl|CDD|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	0.00724537
NZ_CP007700.1|WP_002964923.1|1713066_1714092_-|GTPase-ObgE	gnl|CDD|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP007700.1|WP_002964916.1|1706394_1707744_-|murein-hydrolase-activator-EnvC	gnl|CDD|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	4.17551e-139
NZ_CP007700.1|WP_002964930.1|1721066_1721741_+|AzlC-family-ABC-transporter-permease	gnl|CDD|377070	pfam03591, AzlC, AzlC protein.	6.64901e-26
NZ_CP007700.1|WP_002964918.1|1708873_1709383_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl|CDD|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	4.52877e-70

Protein sequences

>NZ_CP007700.1|WP_002964923.1|1713066_1714092_-|GTPase-ObgE
MKFLDQAKIYIRSGNGGAGAVSFRREKFLEFGGPDGGDGGRGGDVWVEAVDGLNTLIDYRYQQHFKAKTGMHGMGRNMTGGKGDDVVLRVPVGTQIFEEDNETLICDITEVGQRYRLAKGGNGGFGNLHFTTSTNRAPRRANPGQEGIERTIWLRLKLIADAGLVGLPNAGKSTFLASVTAAKPKIADYPFTTLHPNLGVARIDGREFVIADIPGLIEGASEGVGLGDRFLGHVERTRVLLHLVSAQEEDVAKAYQVIRGELEAYEHGLADKPEIVALSQVDTLDPETRKAKVKALKKACGCEPLLLSAVSHEGLNDTLRQLARIIDLSRAEEAGTAQAEE
>NZ_CP007700.1|WP_002964922.1|1711902_1713039_-|glutamate-5-kinase
MLKKLKDYRRIVVKIGSALLVDRATGLKRKWLESLGQDIAALQHAGVEVLVVSSGAIALGRTVLGLPKKALKLEESQAAAAAGQIALAKAYADVLGGHGIKSGQILVTLSDTEERRRYLNARATIETLLKLKAVPIINENDTVATTEIRYGDNDRLAARVATMMGADLLILLSDIDGLYTAPPHKNPDAQFLPFVETITPQIEAMAGAAASELSRGGMKTKLDAGKIANAAGTAMIITSGTRFGPLSAIDRGERATLFEAAHAPVNAWKTWISGNLEPAGRLTVDAGAVKALKSGKSLLPAGVKEVDGDFERGDTVAVMNEDGREIARGLIAYDAADARKVAGHKSDEISAILGYDARAAMIHRNDLVVRAASDAKAA
>NZ_CP007700.1|WP_002970321.1|1710609_1711893_-|glutamate-5-semialdehyde-dehydrogenase
MLVKADMTKDIAQVMAEVGRKAKAAAAPLSIATSEQKNKALNAAADAILEARADILEANRLDLANAEKNGMAASFVDRLTLNEARIDAIAEGIRAIATLPDPVGEVIAEWDRPNGLHIERVRTPLGVIGVIYESRPNVTADAGALCLKAGNAVILRGGSDSAHSSAAIHKALVKGLEAANLPADAIQIVPVTDRAAVGEMLKGLGGAIDVIVPRGGKSLVARVQSEARVPVFAHLEGICHLYIDKSADLDMARRIALDAKMRRTGICGAAETLLVDRAVASTHLAPILGDLAAGGCEIRGSAEVLALYPAAKPATEEDWSTEYLDAIISVALVDGISGAIDHINRYSSHHTEAIVAEDAQTVARFFNEIDSAILLHNASTQFADGGEFGMGAEIGIATGKMHARGPVGVEQLTSFKYRVRGSGQVRG
>NZ_CP007700.1|WP_002964920.1|1709935_1710610_-|nicotinate-nucleotide-adenylyltransferase
MKFGFGLSALKEQYPGVDAHYLRMPHVEKGMTVGLFGGSFNPPHGGHALVAEIAIRRLKLDQLWWMVTPGNPLKDSRELAPLSERLRLSEEVAEDPRIKVTALEAAFHVRYTADTLALIRNANPDVYFVWVMGADNLASFHRWQRWREIAQNFPIAIIDRPGSTLSYLSSRMAQTFSDSRLDERYAPVLARRMPPAWTFIHGPRSSLSSTALRKVQLKKAPSKK
>NZ_CP007700.1|WP_002972331.1|1709401_1709773_-|ribosome-silencing-factor
MNETNLVSATFDAALASLENSKAESIIPIDIRGRSTIGDYMIVASGRSHRHVTAVADHLVQALREAGCKEMRVEGLESGDWVLIDTGDIIVHIFRPEVRDFYNLEKIWLDDDFGDERAPGLVH
>NZ_CP007700.1|WP_002964918.1|1708873_1709383_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MRVSVFAVGRMKSGPERELVERYFDRFAKAGPPLGLEFAGVSEIPESRGQTAQLRKAEEAQRIHEALDNAKSGGTSSGGAALILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTWPHQIARILIAEQLYRAATILAGHPYHRS
>NZ_CP007700.1|WP_002970320.1|1707856_1708756_-|hypothetical-protein
MSSPTIITLSSIPPRFGLLKPTLFSLLSQRLKAEEVRLYIPHKYRRFPDWDGRLPEVPAGITIVRCDEDLGPATKVLPAARDLKGRDVDILFCDDDKIYDANWHQRFKAEAARKPGHCIIEDGETFPDIADAGRPADRLPRSRWKPKDFKYRMKRIASLFLYKPNRGTPGYVDRISGFAGVLVHPDWFDELFYDIPDIMWTVDDPWISGHLERRGIPIWMIGRNSRRAEGKASGVSALLNHVEDGQDRVDADLLVIDYFRQHYGIWQKTKMIDEKATLRTASMREMMRRRKAELGLIDP
>NZ_CP007700.1|WP_002964916.1|1706394_1707744_-|murein-hydrolase-activator-EnvC
MNSIGLFRTLGGFAPLRAGRLLAGFALAGALACAPPAVAQDALKQQRDQMASEYEKLSNELTVTGDTLKQLEDEVASLKKDQSTITAALIQSAKTDKKLQQDIADIADRLVALREQEDGIRASLRARRGVLAEVLAALQRMGLNPPPAILVRPDDALASVRSAVLLGAVVPDMRDQVKELTGDLKDMQHVSASIAQEQEKLKETRTAQAEERERQSLLLEEKKKLQRQSEQEIEAQRKHSEELAAKAGSLKELIASLDKQMASVREAAEAARKAEAERLAAAKEKAGESTPGDRHLRAQSDFSTLQGRLVLPAAGKIMRRFGDKDGVGGSMMGQVVETLPSATITSPSDGVVLYAGVFRSYGQLLILDAGNGYHIVMAGMGRIDVAQGQFVLAGEPVGAMGEKLLASVAPVEVGNGAPLLYIEFRKDGKPVDPAPWWTERLSGRTQNDT
>NZ_CP007700.1|WP_002964915.1|1705076_1706405_-|S41-family-peptidase
MIRKLSLLFAGALLGASAMVMVQGAPASTAFAAGKDSDVYKELALFGDIFERVRAQYVTPPDDKKLIESAINGMLTSLDPHSSYLNPEAAQDMRVQTKGEFGGLGIEVTMDNDLVKVIAPIDDTPASKAGVLSGDLITKIDGQEVRGLSLTDAVDKMRGEVGAPIELTILRKGADKPITLKINRAIIKVKAVRSRVENDVGYLRIISFTEQTSEDLKKAIKDIQEKVPADKLKGYVLDLRLNPGGLLDQAVAVSDAFLDKGEIVSTRGRDPQDVTRFDVRKGDLTNGKPLIVLINGGSASASEIVAGALQDHRRATVLGTQSFGKGSVQTIIPLGENGSLRLTTALYYTPSGKSIQGKGITPDIKVDQPLPPELKGEDVVRGESELKGHIKGNAEDASGSGSSAYVPPDPKDDLQLNEALKLLRGEVANAAFPPDPKKGVLN
>NZ_CP007700.1|WP_002964914.1|1704341_1704878_-|RNA-pyrophosphohydrolase
MSEHKGPTGAMVDPESLPYRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHLMGLALKGKYRGQTQKWFAYRFEGDESEIAINPPPGGHTAEFDCWEWKPMADLPNLIVPFKRKVYEQVVATFRHLAA
>NZ_CP007700.1|WP_002964925.1|1715399_1715957_-|GNAT-family-N-acetyltransferase
MNDICTIARDKVVVRALEKADLQRYRAIRLNALQRAPMSFGSTFEEENAYSDTIFARRLEKVDGNAIFGAFHGEELLGIAGHHRHERRTERHRGTLASVYVEPQARGLKLGEALVQKVIDHAARHVVVLDARVVATNEAAKRIYYALGFKTCGVERKALLVQGQYLDQELIYIDFSDPAWKDKLG
>NZ_CP007700.1|WP_002964926.1|1716010_1716661_-|GNAT-family-N-acetyltransferase
MVVEEESYEASCCKREADYADASPGLEKELGYVLDCPILVTERLVLRPPHAEDVDAISYLANNARVSSMLARMPHPYTRENALDFVGRVRKGEMGNCIYAITQAETGIFMGCCGIHPYKHGEGLEIGYWLGEPYWGHGFATEAAHALIDLAFRATGIGRLHVSCRASNGGSRRVIHKCGFQFSGMGMADSLAAGNVPVEHYVLDRRTWIGLRSWQS
>NZ_CP007700.1|WP_002964927.1|1716781_1717051_-|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSFRTKANGRTYVSVNPIAEAAE
>NZ_CP007700.1|WP_002964928.1|1717076_1717505_-|50S-ribosomal-protein-L21
MFAVIKTGGKQYRVAANDLIKVEKVAGEAGDIVEFAEVLMVGSTIGAPTVAGSLVTAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEILTDGAKPSKKAAEKKAPKADAAEGEAAKPKKAAPKKAAAKAESAE
>NZ_CP007700.1|WP_002964935.1|1718214_1718901_+|IS6-like-element-IS2020-family-transposase
MAIDFKGAHFPKNVILYAVFFYVRYPVSYRDLQEILAERGIEVDHATLNRCVVRYSPQIATQAQMRKRHTAGSWRVDETYLKVRGKWVYLYRAVDRDGQTLDFMLSERRNVGAARRFFKKAITSSGVPHKIVIDKSGANLAGAQAVNNILKITGADKLIEILQVKYLNNILEQDHRFIKRITKHMLGFKAFHSAAATIAGIEVAHMIRKNQFANDNCSPFKVFAELTA
>NZ_CP007700.1|WP_002969195.1|1719141_1721070_+|helix-turn-helix-domain-containing-protein
MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENVVVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEPSRAIVTIIYPEDDTALTSEDQELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSGIAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVDADDLHAKSQNSTHIIEAALAAEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVDVYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTGPGLPLQMLLELRPELHVVAIDPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHECLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQGLPPAMSLALSGRSEAATRQVRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLDYEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDAGTHLFVMVKR
>NZ_CP007700.1|WP_002964930.1|1721066_1721741_+|AzlC-family-ABC-transporter-permease
MTERWRQFFHGARSAIPIILGYLPVAFAFGTAASGQGLALLDSTAISALMFSGANQAFFLSAVASGLPTIAIVAICAVASLRHILYGFVLRLRLAGGLASRLAFAFGLTDEVFATVLNATEKSKPDGGWIFGLAFFAWISWVAATFFGAWMGNILQAQFLQLSDALHFALPALFLGLVWVSTSARNVIPMVAAAVIAVMFLCLNLPALAIPGAASAALLARRGD
>NZ_CP007700.1|WP_002964931.1|1721740_1722079_+|AzlD-domain-containing-protein
MSTELWIAVIVIGVLTYITRAVPFLMRLAGNTAPAARAWLSALGPCLLSAMATVVFLDGFQTSIQIGKIIPFLVGSVFASVSMSVRPDPGIGTVAGVTGWWLAASIGSVPTF
>NZ_CP007700.1|WP_002964935.1|1722298_1722985_-|IS6-like-element-IS2020-family-transposase
MAIDFKGAHFPKNVILYAVFFYVRYPVSYRDLQEILAERGIEVDHATLNRCVVRYSPQIATQAQMRKRHTAGSWRVDETYLKVRGKWVYLYRAVDRDGQTLDFMLSERRNVGAARRFFKKAITSSGVPHKIVIDKSGANLAGAQAVNNILKITGADKLIEILQVKYLNNILEQDHRFIKRITKHMLGFKAFHSAAATIAGIEVAHMIRKNQFANDNCSPFKVFAELTA
>NZ_CP007700.1|WP_002964932.1|1723095_1724535_-|hypothetical-protein
MASKTTLNAKNLEALGAKRLAELLIEISTGNANHKRLLRMELVGNSSGAELAREVRKRLGSIGRSKSWIDWQNAKSVRADLEAQRKSIAEKIAPTDPNEAFELIWQFLSLADPIFERSCDGSGALIESFHAACEDAGRIAAMAKVPIDRLVEKIFSVLQDNGYGQYDALIEAMAPALGEAGLRKLQRAFEAWAKEPQPKVASKDKEVIAWSSDGPVYRDQLYASGKSITVKVVLQQVADALGDVDLYIEQQSKESQTFATVTTDIARRLLAAGRAEDALTALEKTKFDSCREIPFEWQILRAEVLESLGRAEEAQQFRWKSFEQNLNDELLREYVKRLPDFDDVEAEEKAFAFVRAVADANHALYFFLQYPSLSEASKLVVSRASEMDGDHYELMSDAAEKLSAKFPLAATILLRAMIDFTLNNARSSRYKHAARHLLECGALSRSIEDYHSFAPHEAYIADLRKMHGRKHGFWPLVDR

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007700_1	1.1|580208|27|NZ_CP007700|CRISPRCasFinder	580208-580234	27	NZ_CP013986	Klebsiella variicola strain LMG 23571 plasmid unnamed, complete sequence	45587-45613	5	0.815
NZ_CP007700_2	2.1|1714696|37|NZ_CP007700|CRISPRCasFinder	1714696-1714732	37	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	75259-75295	8	0.784

1. spacer 1.1|580208|27|NZ_CP007700|CRISPRCasFinder matches to NZ_CP013986 (Klebsiella variicola strain LMG 23571 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

ataagatgcgcgcaaggaaagatctgt	CRISPR spacer
aacagatgctctcaaggaaagatctga	Protospacer
*  ****** * ************** 

2. spacer 2.1|1714696|37|NZ_CP007700|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

gtcgatccgaccgctgttccggccaatggcagtcttg	CRISPR spacer
atcgatccgaccgctgttcctgccgatggcgaacccg	Protospacer
.******************* ***.*****.. *..*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	794828 : 806756	13	uncultured_Mediterranean_phage(90.0%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP007700|794828:806756|DBSCAN-SWA
CTTGGCAGCATCGGATGCACATACAGGTGGAAAAGACGGCACACGCGTGCCGATGGATACCCTGTGGCAAAATGAGGCCGGGCGAGGCGCAGGCGAGCCGTCACTGCTGATCGATGTGCAGGGCTTTGAAGGTCCGCTCGACCTTCTTCTGCATCTTGCGCGTAACCAGCGCGTCGATCTTGCGCGCATTTCCGTGCTGGCGCTTGCCGAACAATATCTCGGTTTCGTGGAGCAGGCGCGCGCGCTGCGTCTGGAGCTTGCCGCCGATTATCTCGTTATGGCGGCATGGCTTGCCTATCTGAAATCCAAGCTGCTGATCCCGAAGCAGCAGGGCGACGATGGCGCCACGGGCGAGGAACTCGTTGCCTCCCTGCAATTCCGGTTGAAACGGCTTGAAGCCATGCGCGATGCGGCGGCGGCACTCGTCAATCGTCATCGGCTCGGCCGCGATGTTTTCCCGCGCGGCATGCCGGAAATGGTGGTGGTGGACCGCGCCAGCCGTTTTTCCGCAACGCTTTACGATCTGCTTAGCGCCTATGCGTCGCAGCGCCAGCGCCAGGCGGTTTCCCAGGTACAGATAGAAAAACGCAGCGTCTGGTCCCTCAAGGAGGCACGCACGGCGCTTGTGCGCCTGATGGGCGCGGTGGGCGACTGGGTTTCGCTGGACCGTTTTTTGATCGATTATGCACTTTCTCCGCAGGAGAGGGCGTCGGCGCTTGCCAGTTCTTTCGCCGCATGCCTCGAGCTGGTGCGCGAAGGCAAGCTTGAAGTACGCCAGAACGCTCCGTTCGAGCCGATCTATATGCGCGCGACCCGCGAACTCGATGAATTCGATGAGGACGAAAATGCCTGAAGCAGAGCGCCGCGATTTGATGGATATGGAAGGCGTTGGGGAAGAAGAGCAGGCGGGGCCTGCCTCGCCGGTGACGCTTGCCGAGCTTGCCCGCATTGTGGAGGCGATTGTTTTTGCGTCTTCGCAGCCTGTTTGCGAGCGCGCACTTGCCGAGCGGCTTCCCGCCAATGTGGATATTGCTCCGGTTTTGAACCATCTCCAGAAGGTTTACGAGGGCAGGGGCGTGCATTTTGTGAAGGTGGGCAGTGGCTGGGCGTTTCGCACCGCGCCAGATCTCGCCTTCATCATGAACCGCGAGACTGTTCAGCAGCGCAAGCTTTCGCGCGCGGCCATGGAGGTGCTTGCCATCATTGCCTATCACCAGCCGGTGACACGCGCCGAACTTGAGGATATTCGCGGCGTGGAAACATCCAAGGGGACGCTTGATGTCTTGATGGAAACCGGCTGGATCAAGCTGCGCGGGCGCAGGCGCACGCCAGGGCGCCCGGTAACATATGGCACCACCGACGCTTTCCTCGACCATTTTGGCCTGCCGGAAATCCGCGATCTGCCCGGTCTTGAGGAATTGCGCGGCGCAGGGCTTCTCTCGGCGCGCATTCCTTCCAGTTTTGCCGTACCGATCCCCAATATCGACCCGGACGAGCTGACCGAAGGGGAGGACCCGCTGGAGGATATTGATCTGGAGGGGCTGGGTTTGCTTGCACCCAGGGGAGAATAGAACAAAATTTCTGCCTGCGACGGATTAATCCGGTTTGAAGCCGTTCATCATCACACTTCTGTTTGAAAGATTTGTTGAAAGCGCTTAAATCGTATCGGAGATAGCAGGCATATGCCGCGCCTTGGGCGGCACTGAGAGGAATAATATGGGTAGCTTTTCCATCTGGCACTGGCTGATCGTTCTGGCGGTTGTGCTTCTTCTGTTCGGCCGCGGCAAGATCCCCGAGCTGATGGGCGATGTCGCCAAGGGTATCAAGAATTTCAAGCAGGGCATGGCTGACGAAGACGCCAAGGAAGATCCGCGTACGATCGACGCCAAAGCGGAAGAACCCGTCAAGGACGTCAAGAAGACCACCAAGTCCTGATCCTTCCGGGATGAACTGCCATGGGCTGAAAACGCGCATGGCAGGTTTGTGGGCAGTGCGGCTTTTCGCCAAGAGACAGGATGTGCGCGCAGAGCGCAAGGTATCAAATTATGTTCGATATCGCTTGGTCTGAACTGCTGATTATCGCAATTGTCATGATTGTGGTGGTCGGTCCCAAGGATTTGCCGAAAATGCTTCGCGCGTTCGGCAAGGCGACTGCACGCATGCGCACCACCGCCAACGAGTTTCGCCATCAATTCAACGAGGCCTTGAAAGAGGCGGAACTTGAAGACGTCAAGACCATCATCGATGAAGCCAGAAGCCTTGATCCGCGCACAAGGCTGACACAGGTTTTTGACCCGATTCGCAGTGCTGGCGAGGATTTGCGGTCTGGTCTCCAGTCCGCAACATCAATGTCGCCAGTCACCGAGAACAAGGTGGGTGAGGTTACGACGCCGATTGAGCCGGGCGGAACGCCAGTTCCCGCGCCGCCAGTTCCCGTACCAATGATCACCGCGCCCGAAGAACCCGCCAAGCCTAGGAAAACATCACCGCGTCCGGCTGCAAAAGCCGGGCCGAAACCGACGACGACAAAGACTGCCAAAAAAACCGGAGCTACCCCCAAGCCGACGGCAGACAAGACCGCAACGCCGGTTAAAAAGACCACAAAGAAGACAGGAACCAAAGCGTGAACCGGGACGAGGATGAAATCGAACAGAGCGCAGCGCCTCTGCTTGAACACCTGATCGAACTGCGCCGCCGCCTTATTTGGGCTATCCTGGCTTTTTTCGTGGCATTCATTTTCTGCTTTGCTTTCGCAAAACAGCTCTTCAACCTGCTTGTGGTGCCGTATCAATGGGCCATCGACTGGGCCGGCATGGACCGCTCCAAGGCGGAATTGATCTATACCGCACCTCAGGAATTCTTCTTCACGCAGGTGAAGGTGGCCATGTTCGGCGGCATTGTGCTGGCCTTCCCGGTCATCGCCGCACAGATTTATAAATTCGTGGCTCCCGGTCTCTACAAGCACGAACGCACTGCATTTCTGCCGTTCCTGATCGCGTCGCCCATTCTGTTCCTGATCGGCGGCGCGCTCGTCTATTTCTTTTTCACGCCCATGGTGATGTGGTTCTTCCTCGCCATGCAGCAGACCGGCGGCAGCGGCGAGGTCCAGATTTCGCTTCTGCCGAAAGTGTCGGAATATCTGAGCCTCATCATGACGCTCATCTTTGCTTTTGGCCTGGTCTTCCAGTTGCCGGTGGTGACGAGCCTCATGGCGCGTGTGGGGCTGGTGACTTCGGCGGGGCTGAAGGACAAGCGCAAATATGCGATCGTCATTGCCTTCGTCGCGGCTGCGGTGCTGACTCCGCCGGACCCGGCGAGCCAGATCGGTCTTGCCTTGCCGACGATCCTTCTTTACGAGATTTCGATCTTTCTGGCGCGCATGATCGAGAAGAAGCGGGATGAGGCGCAGGCATCTGCCGACGCTGATAACAACGCTTCCTCCACCTGATCTGACGTCAGGCATCTTTGGGGCTGAAGATCGTTTAGCCTCGCTTCTGTCCAATTTCACGAAATGGCTTTTTTCCATGCTCGACATCAAATGGATTCGCGAAAACCCGGAAACCCTCGACAAGGCGCTCGCAAAGCGTGGGGCTGCTCCGCTTTCGTCCGAACTGATTGCGCTGGATGAAAAGCGCCGCGAGCATGTCGGCAAGGTGCAGGCAGCGCAGGAGCGCCGCAATGCCGCCTCGAAGGAAATCGGCAAGGCCATGGCCGCAAAGGACATGGGCACGGCTGAAAAGCTGAAGGCCGAAGTGGGCGAACTGAAAGATTTTCTCGCCCATGCGGAAGAAGACGAGCGCCGCCTCAGCAAGGAACTGAGCGACGCATTGTCCACCATTCCCAATATTCCGCTTGATGATGTGCCGCTCGGCAAGGATGAAAGCGACAATGTTGAGCTGCGCCGCATTGGCAACCCGCACAATTTCTCCTTCCAGCCGAAAGAGCATTTTGAGCTTGGCGAGGCGCTTGGATACATGGATTTCGAGCGCGCGGCCAAGCTTGCCGGTGCGCGCTTTACGGTGCTGAAAGGCCCGCTCGCCCGTCTTGAGCGCGCGCTTGGCCAGTTCATGCTCGATCTTCACACGACAGAACACGGTTATACCGAAGTCATGCCGCCGCTGATGGTGCGCGACGAAGCGGTCTATGGCACGGGGCAATTGCCGAAGTTTTCAGAAGATCTTTTCCGCACGACGGATGGCCGCTGGCTGATCCCGACGGCGGAGGTGCCGCTCACCAATCTGGTTGCCGAAGAAATTGTCGATATGAAGGGGCTGCCGCTGCGCTTCACGGCGCTGACCCCATGTTTTCGCTCGGAAGCGGGGTCGGCCGGGCGCGATACGCGCGGCATGTTGCGCCAGCATCAGTTCCTGAAAGTGGAGATGGTATCGATCACCGATGCGGAAAGCTCCGTTGCCGAGCATGAGCGCATGACGGCTTGCGCGGAAGAAGTGCTGAAGCGGCTGGGCCTGCCGTTCCGTACCGTTGTGCTTTGCACGGGCGACATGGGCTTTGGCGCACAGCGGACCTATGATATCGAGGTCTGGTTGCCGGGGCAGAACACCTATCGCGAAATTTCAAGCTGTTCGACCTGCGGTGATTTCCAGGGCCGCCGCATGAATGCCCGCTATCGCCCGGAAGGCGAGAAATCCACGCGCTTCGTGCACACCCTCAACGGGTCGGGCGTTGCTGTCGGGCGCGCGCTGATTGCGGTTATGGAAAATTACCAGCAGGAAGACGGCAGCATTCATATTCCTGAAGCATTACAGCCATATATGGGCGGCCTCACGCGGATCGAAAAAGCCGCTTGATCTGGAATTATAGCATGCCCCCAAAAGTGGGAACCGGTTTTGGGGACATGCGAAAGAACAAAGAGAGAGCAGTTTCAACGATCCCATTTCAACTGGAACCGCTGTAGTGTCTTAAGTGTCTTATCCATTTCGGCGAAGGAGTGACAAATTGCGTATTCTGCTGACGAACGATGACGGTATCCACGCTGAAGGCCTCGCTGTTCTGGAGCGAATTGCACGCAAGCTCTCCGACGATGTGTGGGTGGTGGCCCCTGAAACGGACCAGAGCGGGCTTGCCCACTCACTGACACTGTCGGAGCCGCTTCGCCTTCGCCAGATCGATGCCCGTCATTTTGCCCTGCGCGGCACTCCGACCGATTGCGTCATCATGGGGGTGCGCCATGTATTGCCGGGCGCGCCCGATCTCGTCCTCTCCGGCGTCAATTCCGGGGCGAACATGGCCGACGATGTGACCTATTCGGGCACGGTTGCCGGTGCGATGGAGGGGACATTGCTTGGTGTGCGAGCCATCGCTTTGTCGCAGGAATATGAATATGCGGGCGATCGCCGGATCGTGCCGTGGGAAACGGCGGAAGCTCATGCGCCTGAGCTTATCGGGAGGCTGATGGAGGCGGGCTGGCCGGAAGGCGTGCTGTTGAACCTCAATTTCCCGAATTGCGCTCCGGAAGAAGTGAAGGGCGTGCGCGTCACGGCACAAGGCAAGCTTAGCCATGATGCGCGCCTTGACGAGCGCCGCGACGGACGTGGTTTCCCTTATTTCTGGCTGCATTTCGGTCGCGGCAAGGCTCCGGTTGCCGACGACAGCGATATTGCTGCCATCCGTTCGGGTTGCATTTCAATGACCCCACTCCACCTTGATCTGACCGCTCATAAGGTTCGTGCAGAACTGGGCGCGGCGCTTGGAGTGGAAGCATGAGGCAGGCAACGTCTGAACGCCCGCGGCTTTCGGACCGGGAGGGATTTGCATCCTTTGTTCTGCGGATGCGTGGGCACAGCATTGATGATCCGCAACTTTTTGCGGCAATTGAAGCAACGCCGCGCCAGAGCTTTCTGGCGGCGGCATGGTCGCATCTTGCCTATAGCCCGCGAACCGCGCCGCTTGATTGCGGTGAATATATGGAAGGCATAGACGATCAGGCGCGCGTCATTTCCGCCCTGAAGCTTGAGCCCGGCCATCGGGTTCTGGAAATCGGCACCGGCTCCGGCTTTACCGCCGCCGTTATGTCCTTGCTGTCCGGCCGTGTAACGACGGTGGAACGGTATCGAAAACTCTGCGACCACGCTCTCCAGCAGTTCGTTTCGCTGAAGCGCGAGAATATCATGGTGAAACATACAGACGGGCGCCACGGTATGCCGGGCGGGCCGTTTGACCGCATTGTCATCTGGCTCGCATGCGATGAGGTGCCGCGCCATTTCGTTGAACTGCTCGCCACCCATAGCGTCCTGATAGCCCCGATCGGCCCTGGCGATGGACGCCAGATCATGACGCGGATTTCAAAGGTTGGAAGCCGTTTTGAACAGGAAGACCTCATGCCGGTTCGATATCAGCCGTTCATCGAAGGCACGTCTTCCGTTCTTTAGAGCGCATCCCGAAAAGTGTGAAACGGTTTTAGGAAAAGATGCGCGTCAAAACAAAGGATTAGAGCGCCGATCTGATTCAATCAGATCGAAACGCGCTCTAAAACGGGTTGAATTTAAGTCCAACCATCATCCCGCTCCAAGATTTTGTTTGAGGATGATTCCAAAAAACCGCTTCGCGCTTTTGTCGGAACGGCTTCAGTTGCATTGATTTTGAGCAATGGCAGCCTCGCCAGCTTGGCATTTGCGGGCCGGAAGTGGCTGTTTGCGCGTCATTCTTGCGCTTATGGTGTTTATTTGGTGAATCTTTTTTTAGTTTCGGGGCATTCTTAACCAGAGAGTAACATTAACGCGTTTTAATCGTCTTAGTGAGTTTCGAGTATGGACGAGTTGAACATGCGTTTACCAATTTTGCAGCATACGTCCGAACGTCTCCTGCGGAATGTCGCAATCGTTCTGATTGCCGGTTTTGGAGCCGGGTGCAGTGCTGATACGATGCGCTTCACAGACGGCATTTTTACTGGTTCTACGTCCAGTCAGCCCGTCGCGCAGCAACCCGCAGGCAATGTTTATGCGTCTGCCCCCGTGGCTTCGGCCCCGCCGGTTTCAAGCGGAACGGTCCAGCGCAATTCCTTGCCGCCGGTATCGTCAGCGCCTCTGGGTGCGCCTGTCGCTGCGGCATCGACGCAGATGCGCAATCAGGTCGATCAAGCCCAGGATATGGCGGCGTCCCGCGTCAATAATACCGTCAATGCCGCTGAAACCAGGGTCGCAAGTGCCGCCACCGTTACGCATAATACGGTGAATGGCGCGAAGGAAAAGGTTCTTGGCCAGCTTCCGGCGACGGGGCAGGGCGCGCCGCGCCCGATGGACAACAATATCGCTGGCGTTCCGCAAGCACCTGCTGTCAACGGCAAGAAATCCTCGCCGACCAATATGGCATCGGCTGGCGGCGCTATCGCAACCCCGCCATCAGTGGGCGGTGCCTACGTCGTGAAGAGCGGGGATTCGCTGTTCTCCATCGCAAAGAAGCACAATGTCCCTGTCGACCAGTTGAAGGCGGCAAACGGCCTGACCAGTGGCGCCATTCGCGTCGGGCAGTCGCTCGTTATTCCGTCTGCTGCCGCAGGTGCGCCGACACAGGTGGCCGCAATCACGCCGCAGCCGGCAAACCCGGCCAAAGCAGCCAGTGCGCCGGCCAATGGAGGTGCAGAGGTAAAGCCTTATACGCCGCCGCAGGCCAGCAACAAGGTAATCGAGGATGCGGAAAAGGATCAGGCCGCAGCGCCATCCTCAACCGGCATCTCGCAGATGCGCTGGCCGGTTCGTGGGCGCATTCTGGCAAGCTTCGGCCAGCGTGAGGGCACCTCGGTCAGCGACGGTATCGATATCATGGTGCCGGAAGGCACGCCGGTCAAAGCCGCCGAAAACGGTGTTGTGATCTATGCGGGCGATGGTTTGAAGGAATTTGGCCAGACCGTTCTGATCCGCCACGACAATGGCCTTGTGACCGTCTATGGCCATAACAGCCAGATAATGGTGCAGCGCGGCCAGAAGGTTCGCCGTGGCGAGGAAATCGCCAAGTCGGGCATGAGCGGCAACGCCAAGTCGCCGAAGCTGCACTTCGAGGTGCGCAAGAACTCGGCGCCGGTCAATCCGACCAAATATCTGGAATCATAACAGTTTCAGCAGGAAAAAATGAAAAAGGCGGGCAGGGGCCCGCCTTTTTCATTGCATGGTTTTTCCAAGCCTGCCTGCCAGATCCTGAATATATTGCCACGCAACACGGCCCGAACGGTTGCCGCGTGTGGTGGACCATTCCAGGGCTTCCCTGTGCATCTGGTCGCGGGCATAGTCGAGTTTGAAATGCGCCGCATAGCCGTCGATCATGGCAAGATAATCGTCCTGGCTGCATTTATGAAAGCCGAGCCACAGGCCGAAGCGGTCCGACAGTGAAACCTTTTCCTCGATGGCTTCTGAGGGGTTGATCGCCGTCGAGCGTTCATTGTCGATCATGTCGCGCGGCATCAGGTGGCGACGATTCGATGTTGCGTAGAAAATCACATTGTCGGGGCGTCCTTCCACGCCGCCTTCAAGTGCTGCTTTCAGCGATTTATACGATGTATCGTCATGATCGAAGGATAGGTCGTCGCAGAACAGGATGAAACGATGGCGCGTTTCCTTGATGAGATTCATCAAAACCGGCAGGCTATCGATATCCTCACGATGAATTTCGACAAGCTTCAGCGGTGTTATATCCGGAAATTCGGCGTTCACGCTCGCCTGCGCGGCCTTTACGAGCGATGATTTACCCATGCCGCGCGCGCCCCAAAGCAGAACATTATTGGCGGGAAAACCTTTTGCGAAGCGGCGGGTATTGTCCACAAGCTGGTCACGTACCAAATCTACGCCACGGATCAACGCGATATCCACGCGGTTCACACGGCTGACGGGATCGAGAACAAGCCGCTCCGGGGCCCAGACGAAACAGTCTGCGGCGTCGAGATCGGGTGTTTTTGCTTCCGGCGGTGCAATGCGTTCCAGCGCGGCTATCAAACGGTCCAGTTTCTGGCTGAGTATATCTTCGGTCGTCATTTTAGGCCCCTGATGGTAGGGGTAACGACTTAACATGCTAACGCGGAAGCGAAAAGTGTGCGACCTTGGCGCAGACGGGTTCATCGCCGGTTGCAATTGAAGCACCAACCATTGTAATGCCGTTAATAATTTTGTCTTCGTGACTTCAGAGGAGTTCCTAATGTTCGTAACACCGGCTTTCGCTCAAGCATCCGGCAGCGTTGTTGGACCAGATATGCTCATGAGCATCCTGCCGTTCATCCTGATCTTCGTCATCATGTACTTTCTCATCATCCGCCCGCAGCGGACCCAGATGAAGAAGCGTCAGGAAATGCTGAACTCCGTGCGTCGTGGCGATACGGTCGTGACGGGTGGCGGCATCGTCGGCAAGGTTCTCAAGGTTGTCGATGACAACGAACTCGAACTCGAAATTGCCGATGGCGTTCGTATTCGCGTTGTGCGTGCCACCTTGATGGATGTGCGCGTGAAGGGCGAACCTGTCGCCGACAACAAGAACAAATAATCTCTTTTTTTTGAAAGAGCAGGCGGGCTCCGGTAAGGTTTAAATAACCTGAGCCCGTTCATTATGCAGCACGCGCGCAAAATCGCGTTTGCGTGCAAATAGCCGGAAGATTTTCCCTTTGGGTGAACTCCGGCAATGCTTCATCCAAGCTGAAACGGACTTGCATTCCATGCTCTATTTTTCACGCTGGAAATCTGCACTGATATGGCTGGCAGTCCTTGTCAGCCTCATCATCGCATCTCCAAATTTTTTCTCGCGTGAAACGCTGGAAAATCTGCCGGATTTTCTGCCCAAGAAGCAGGTATCGCTGGGGCTCGACCTTTCGGGCGGCTCGCGGCTTATTCTTCAGGTGCAGAATGCAGGCAAGACCGATCTGGAGACGACTGCCAATATCATGCGGCAGCGTCTGGAAGAGCTTGGCTATGGCAATCCCGTTGTCGAGGGAGAGGGGCGCAATCAGATTCGCGTGGAGGTTCCGGGCCTTTACGATGCGCAGCTTCTCAAAGATATTCTCACCATTCGCGGAAATCTTTCCTTCCGCGCCATGGACGACACCATGTCGCCGGATGACGCCATTCGCGGCACACCGCCTGCCGATAGCGAAATCGTCTATTCCTTTGATGATCCTCCGGTTGGTTATCTTCTGAAAAAAACACCCATTCTCACCGGGCATGACATCACGGATGCCAAGGCGAGTATTTCCGCCGACGATGGCCAGCCGGTCATCACGCTGACACTGGACGACAACGGACGCCGGCGTCTGGCCGATCTGACGGCGCAGGGCAATGAGAATTCCTTCGCCATCGTCGTTGATAATCAGGTGGTTTCCGCGCCCACGGTTTCCGGCCCGCTCGACACCAGTGAATTGCAGATCGAAGGCGCATTCGATTTACAGGCCGCCAATAATATGGCCGTGGTTCTGCGCTCTGGCGCCTTGCCGCAAGCGGTGACTGTGCTTGAAGAGCGCACCATCGCCTCCGCGCTCGGTGAGGATTATGCGAGTGCGGCAGTGCTTGCGGCCCTTCTGGCGGCACTGGTGGTCGGCCTCTTCATGGTGCTTTCCTATGGCATTCTGGGTGTCATCGCCCTGGTTGCGCTTGTGGTCAATATCGTCATCCTGACGGCTGTTCTGTCGCTCATTGGCGCTTCGATAAGCCTTGCGAGCATTGCAGGTCTCGTCTTGACCATCGGCCTTGCGGTCGATGCGCATATTCTGATCTATGAGCGTGTACGCGAGGATCGCCGCAAGGGCTATTCCGTCGTGCAGGCGATGGAATCGGGCTTTTATCGCGCCCTTTCCACCATTGTGGATGCCAATCTTACCACGCTTATCGCCGCACTCGTTCTGTTCCTTCTGGGGTCGGGTACGGTGCATGGTTTTGCGCTCACGGTCGCAATCGGCATCGGCACGACGCTTTTCACCACGCTCACTTTCACGCGCCTGCTGATCGCCCAATGGGTGCGCACCGCCAAGCCGAAGGAAGTGCCCAAGCGTCGCCTGAAACTGGTGCCAACCGTCACTCATATTCCCTTCATGCGCCTCCAGTTCGTAACGCTCGGCATTTCGGTGCTGGCCTGCGCAATCGTGGTCGCGCTTTTCGTCAATATCGGCTTCAACTACGGCATCGACTTTCGTGGCGGTTCGATGGTCGAGCTGCAGGCGCGCAATGGCGATGCCAATCTGGAAGATATCAACGAGCGGCTCGCGGAGCTGAATATCGATAGCGCCCGCGTTCTGCCTGCGAAATCGCCGCGCTCGGCCCTTGTCATTATCGGCAGTCAGGAAGTGGGCGACGATGCGGAGCAGACCGTTGCCGTCAAGCTTCGCGGTGAATTCGAGCAGGATTATTCCTTCCAGCGGGTCGATGTGGTCGGGCCGACCGTATCGGAACAATTGTCGCGCGCAGGCGTGCTCGCTGTCATCCTGTCGCTGATTGGCATCTTCATCTATGTCTGGTTCCGCTTCCGCTGGCAGCTCGCACTGGGCGCGGTGCTTTCCACATTGCATGATGTCGTCATTCTTTCAGGCATGTTCATCGTTTTCCGCATGGAATTCAATTTGTGGAGCGTGGCGGCAATCCTTACGATCATTGGCTATTCGCTGAACGATACGGTGGTGATCTATGACCGGGTGCGCGAGAACCTTCGCCGTTACAAGAGTGCGCCATTGCCCGCGATCATCGATGCCTCGATCAACCAGACCCTGTCGCGAACGCTGTTGACCTCTTTCGTCACCTTCCTGGCACATGTTCCGCTTTATGCTTTTGGCGGCTCGGAAATTCGCATGTTTGCGCTGGCGCTCAGTGTCGGTATCATTGTGGCGAGTTATTCTTCAATCTTCATCGCAGCACCGCTGCTTGTTCAGTTCGGTCTCAAGCCGCGCGAAACCGATGCCGGTGACGCGGTGGATGCGGAGCTTGCGCAATCGCTCAATCTGGAAAGCTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP007700|794828:806756|796543_796762_+|WP_002964012.1|DBSCAN-SWA
MGSFSIWHWLIVLAVVLLLFGRGKIPELMGDVAKGIKNFKQGMADEDAKEDPRTIDAKAEEPVKDVKKTTKS
>NZ_CP007700|794828:806756|801594_802893_+|WP_002964019.1|DBSCAN-SWA
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPAGNVYASAPVASAPPVSSGTVQRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVNNTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAPRPMDNNIAGVPQAPAVNGKKSSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQSLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQAAAPSSTGISQMRWPVRGRILASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGLKEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIAKSGMSGNAKSPKLHFEVRKNSAPVNPTKYLES
>NZ_CP007700|794828:806756|800547_801216_+|WP_002964017.1|DBSCAN-SWA
MRQATSERPRLSDREGFASFVLRMRGHSIDDPQLFAAIEATPRQSFLAAAWSHLAYSPRTAPLDCGEYMEGIDDQARVISALKLEPGHRVLEIGTGSGFTAAVMSLLSGRVTTVERYRKLCDHALQQFVSLKRENIMVKHTDGRHGMPGGPFDRIVIWLACDEVPRHFVELLATHSVLIAPIGPGDGRQIMTRISKVGSRFEQEDLMPVRYQPFIEGTSSVL
>NZ_CP007700|794828:806756|799783_800551_+|WP_002964016.1|DBSCAN-SWA
MRILLTNDDGIHAEGLAVLERIARKLSDDVWVVAPETDQSGLAHSLTLSEPLRLRQIDARHFALRGTPTDCVIMGVRHVLPGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWETAEAHAPELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQGKLSHDARLDERRDGRGFPYFWLHFGRGKAPVADDSDIAAIRSGCISMTPLHLDLTAHKVRAELGAALGVEA
>NZ_CP007700|794828:806756|795672_796398_+|WP_002964011.1|DBSCAN-SWA
MPEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRGE
>NZ_CP007700|794828:806756|801360_801546_+|WP_002964018.1|DBSCAN-SWA
MFEDDSKKPLRAFVGTASVALILSNGSLASLAFAGRKWLFARHSCAYGVYLVNLFLVSGHS
>NZ_CP007700|794828:806756|794828_795680_+|WP_002968731.1|DBSCAN-SWA
MAASDAHTGGKDGTRVPMDTLWQNEAGRGAGEPSLLIDVQGFEGPLDLLLHLARNQRVDLARISVLALAEQYLGFVEQARALRLELAADYLVMAAWLAYLKSKLLIPKQQGDDGATGEELVASLQFRLKRLEAMRDAAAALVNRHRLGRDVFPRGMPEMVVVDRASRFSATLYDLLSAYASQRQRQAVSQVQIEKRSVWSLKEARTALVRLMGAVGDWVSLDRFLIDYALSPQERASALASSFAACLELVREGKLEVRQNAPFEPIYMRATRELDEFDEDENA
>NZ_CP007700|794828:806756|797450_798275_+|WP_002964014.1|DBSCAN-SWA
MNRDEDEIEQSAAPLLEHLIELRRRLIWAILAFFVAFIFCFAFAKQLFNLLVVPYQWAIDWAGMDRSKAELIYTAPQEFFFTQVKVAMFGGIVLAFPVIAAQIYKFVAPGLYKHERTAFLPFLIASPILFLIGGALVYFFFTPMVMWFFLAMQQTGGSGEVQISLLPKVSEYLSLIMTLIFAFGLVFQLPVVTSLMARVGLVTSAGLKDKRKYAIVIAFVAAAVLTPPDPASQIGLALPTILLYEISIFLARMIEKKRDEAQASADADNNASST
>NZ_CP007700|794828:806756|802941_803808_-|WP_002964020.1|DBSCAN-SWA
MTTEDILSQKLDRLIAALERIAPPEAKTPDLDAADCFVWAPERLVLDPVSRVNRVDIALIRGVDLVRDQLVDNTRRFAKGFPANNVLLWGARGMGKSSLVKAAQASVNAEFPDITPLKLVEIHREDIDSLPVLMNLIKETRHRFILFCDDLSFDHDDTSYKSLKAALEGGVEGRPDNVIFYATSNRRHLMPRDMIDNERSTAINPSEAIEEKVSLSDRFGLWLGFHKCSQDDYLAMIDGYAAHFKLDYARDQMHREALEWSTTRGNRSGRVAWQYIQDLAGRLGKTMQ
>NZ_CP007700|794828:806756|804428_806756_+|WP_002969969.1|DBSCAN-SWA
MGELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES
>NZ_CP007700|794828:806756|803968_804310_+|WP_002964021.1|DBSCAN-SWA
MFVTPAFAQASGSVVGPDMLMSILPFILIFVIMYFLIIRPQRTQMKKRQEMLNSVRRGDTVVTGGGIVGKVLKVVDDNELELEIADGVRIRVVRATLMDVRVKGEPVADNKNK
>NZ_CP007700|794828:806756|798351_799635_+|WP_002964015.1|tRNA|DBSCAN-SWA
MLDIKWIRENPETLDKALAKRGAAPLSSELIALDEKRREHVGKVQAAQERRNAASKEIGKAMAAKDMGTAEKLKAEVGELKDFLAHAEEDERRLSKELSDALSTIPNIPLDDVPLGKDESDNVELRRIGNPHNFSFQPKEHFELGEALGYMDFERAAKLAGARFTVLKGPLARLERALGQFMLDLHTTEHGYTEVMPPLMVRDEAVYGTGQLPKFSEDLFRTTDGRWLIPTAEVPLTNLVAEEIVDMKGLPLRFTALTPCFRSEAGSAGRDTRGMLRQHQFLKVEMVSITDAESSVAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQRTYDIEVWLPGQNTYREISSCSTCGDFQGRRMNARYRPEGEKSTRFVHTLNGSGVAVGRALIAVMENYQQEDGSIHIPEALQPYMGGLTRIEKAA
>NZ_CP007700|794828:806756|796872_797454_+|WP_002969412.1|DBSCAN-SWA
MFDIAWSELLIIAIVMIVVVGPKDLPKMLRAFGKATARMRTTANEFRHQFNEALKEAELEDVKTIIDEARSLDPRTRLTQVFDPIRSAGEDLRSGLQSATSMSPVTENKVGEVTTPIEPGGTPVPAPPVPVPMITAPEEPAKPRKTSPRPAAKAGPKPTTTKTAKKTGATPKPTADKTATPVKKTTKKTGTKA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002968731.1|794828_795680_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_002964011.1|795672_796398_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1|796543_796762_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_002969412.1|796872_797454_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1|797450_798275_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002964015.1|798351_799635_+|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_002964016.1|799783_800551_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.1e-40	40.2
WP_002964017.1|800547_801216_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-13	37.8
WP_002964018.1|801360_801546_+	hypothetical protein	NA	NA	NA	NA
WP_002964019.1|801594_802893_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1|802941_803808_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1|803968_804310_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_002969969.1|804428_806756_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

2. NZ_CP007701

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007701_1

• CRISPR_ID: NZ_CP007701_1
• CRISPR_location: 24221-24321
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007701_1

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

spacers of NZ_CP007701_1

>1.1|24249|45|NZ_CP007701|CRISPRCasFinder
CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT

CRISPR arrays and Neighbor proteins around NZ_CP007701_1

CRISPR arrays

The CRISPR arrays of NZ_CP007701_1

>merge|NZ_CP007701|1|24221-24321|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>NZ_CP007701|1|1|24221-24321|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007701.1|WP_002972153.1|17831_18962_+|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl|CDD|183413
NZ_CP007701.1|WP_002966398.1|13837_14572_-|L,D-transpeptidase	unknown	unknown	gnl|CDD|224294
NZ_CP007701.1|WP_002966391.1|21250_21652_-|DoxX-family-protein	unknown	unknown	gnl|CDD|225168
NZ_CP007701.1|WP_002966386.1|26033_26330_-|co-chaperone-GroES	unknown	unknown	gnl|CDD|178988
NZ_CP007701.1|WP_006076634.1|36808_38353_+|insulinase-family-protein	unknown	unknown	gnl|CDD|223685
NZ_CP007701.1|WP_002972151.1|23295_23550_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP007701.1|WP_002967189.1|14811_15468_+|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl|CDD|377025
NZ_CP007701.1|WP_002971287.1|32189_32861_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP007701.1|WP_002966392.1|19726_20965_-|sugar-MFS-transporter	unknown	unknown	gnl|CDD|340952
NZ_CP007701.1|WP_002966395.1|16314_17823_+|histidine--tRNA-ligase	unknown	unknown	gnl|CDD|223202
NZ_CP007701.1|WP_002966390.1|21754_23146_-|class-II-fumarate-hydratase	unknown	unknown	gnl|CDD|234779
NZ_CP007701.1|WP_002966380.1|33205_33766_+|cytochrome-b	unknown	unknown	gnl|CDD|225580
NZ_CP007701.1|WP_002966396.1|15586_16204_+|LysE-family-translocator	unknown	unknown	gnl|CDD|224199
NZ_CP007701.1|WP_002966378.1|34433_36179_+|pseudouridine-synthase	unknown	unknown	gnl|CDD|224108
NZ_CP007701.1|WP_002966383.1|27746_28736_+|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl|CDD|235536
NZ_CP007701.1|WP_002966379.1|33819_34293_-|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663
NZ_CP007701.1|WP_002966382.1|29079_31998_+|isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|237514
NZ_CP007701.1|WP_002966377.1|36159_36723_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl|CDD|223813
NZ_CP007701.1|WP_002972147.1|26810_27659_+|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl|CDD|319827
NZ_CP007701.1|WP_002966393.1|18958_19654_+|ATP-phosphoribosyltransferase	unknown	unknown	gnl|CDD|237438

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007701.1|WP_002972153.1|17831_18962_+|ATP-phosphoribosyltransferase-regulatory-subunit	gnl|CDD|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
NZ_CP007701.1|WP_002966398.1|13837_14572_-|L,D-transpeptidase	gnl|CDD|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.69228e-59
NZ_CP007701.1|WP_002966391.1|21250_21652_-|DoxX-family-protein	gnl|CDD|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
NZ_CP007701.1|WP_002966386.1|26033_26330_-|co-chaperone-GroES	gnl|CDD|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NZ_CP007701.1|WP_006076634.1|36808_38353_+|insulinase-family-protein	gnl|CDD|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	6.24983e-117
NZ_CP007701.1|WP_002972147.1|26810_27659_+|TIGR01459-family-HAD-type-hydrolase	gnl|CDD|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51221e-90
NZ_CP007701.1|WP_002967189.1|14811_15468_+|DNA-3-methyladenine-glycosylase-I	gnl|CDD|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NZ_CP007701.1|WP_002966392.1|19726_20965_-|sugar-MFS-transporter	gnl|CDD|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18971e-166
NZ_CP007701.1|WP_002966395.1|16314_17823_+|histidine--tRNA-ligase	gnl|CDD|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	4.66581e-159
NZ_CP007701.1|WP_002966390.1|21754_23146_-|class-II-fumarate-hydratase	gnl|CDD|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP007701.1|WP_002966380.1|33205_33766_+|cytochrome-b	gnl|CDD|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	3.34911e-53
NZ_CP007701.1|WP_002966396.1|15586_16204_+|LysE-family-translocator	gnl|CDD|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.51794e-45
NZ_CP007701.1|WP_002966378.1|34433_36179_+|pseudouridine-synthase	gnl|CDD|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.08227e-83
NZ_CP007701.1|WP_002966383.1|27746_28736_+|bifunctional-riboflavin-kinase/FAD-synthetase	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NZ_CP007701.1|WP_002966379.1|33819_34293_-|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NZ_CP007701.1|WP_002966382.1|29079_31998_+|isoleucine--tRNA-ligase	gnl|CDD|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP007701.1|WP_002966377.1|36159_36723_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl|CDD|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NZ_CP007701.1|WP_002966393.1|18958_19654_+|ATP-phosphoribosyltransferase	gnl|CDD|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135

Protein sequences

>NZ_CP007701.1|WP_002972151.1|23295_23550_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDNKTQRKIEPTAWIRETDDDESQED
>NZ_CP007701.1|WP_002966390.1|21754_23146_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NZ_CP007701.1|WP_002966391.1|21250_21652_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NZ_CP007701.1|WP_002966392.1|19726_20965_-|sugar-MFS-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKPPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NZ_CP007701.1|WP_002966393.1|18958_19654_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NZ_CP007701.1|WP_002972153.1|17831_18962_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NZ_CP007701.1|WP_002966395.1|16314_17823_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSHFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NZ_CP007701.1|WP_002966396.1|15586_16204_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPKVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NZ_CP007701.1|WP_002967189.1|14811_15468_+|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NZ_CP007701.1|WP_002966398.1|13837_14572_-|L,D-transpeptidase
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAPARPRIARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTRVVVR
>NZ_CP007701.1|WP_002966386.1|26033_26330_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP007701.1|WP_002972147.1|26810_27659_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRARNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NZ_CP007701.1|WP_002966383.1|27746_28736_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NZ_CP007701.1|WP_002966382.1|29079_31998_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NZ_CP007701.1|WP_002971287.1|32189_32861_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NZ_CP007701.1|WP_002966380.1|33205_33766_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVHHFALRDDTLRYMTGHGTPN
>NZ_CP007701.1|WP_002966379.1|33819_34293_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NZ_CP007701.1|WP_002966378.1|34433_36179_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDWDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NZ_CP007701.1|WP_002966377.1|36159_36723_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NZ_CP007701.1|WP_006076634.1|36808_38353_+|insulinase-family-protein
MNTPHSGCLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAQAALPEIFRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANAKPGDAPALDLLSEILGGSQLSQLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ