CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007717	Brucella suis strain 513UK chromosome 1, complete sequence	1 crisprs	csa3,WYL,DEDDh	0	1	3	0
NZ_CP007716	Brucella suis strain 513UK chromosome 2, complete sequence	2 crisprs	DEDDh,csa3,cas3	0	2	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007717_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007717_1

2057717-2057799

Orphan

Consensus_repeat	Method
ATCCCGAAAAGTGCGAAGCGGTTTTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007717_1

>merge|NZ_CP007717|1|2057717-2057799|CRISPRCasFinder
ATCCCGAAAAGTGCGAAGCGGTTTTCGGATAAGATGCGCGCAAGGAAAGATCTGTATCCCGAAAAGTGCGAAGCGGTGTTCGG

>NZ_CP007717|1|1|2057717-2057799|CRISPRCasFinder
ATCCCGAAAAGTGCGAAGCGGTTTTCGG	ATAAGATGCGCGCAAGGAAAGATCTGT
ATCCCGAAAAGTGCGAAGCGGTGTTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007717.1\|WP_002963797.1\|2062416_2062995_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|273579
NZ_CP007717.1\|WP_004689567.1\|2046183_2047317_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181255
NZ_CP007717.1\|WP_004689578.1\|2068160_2068736_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|225757
NZ_CP007717.1\|WP_004689573.1\|2056255_2057137_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP007717.1\|WP_004688165.1\|2060156_2062409_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP007717.1\|WP_002963787.1\|2052742_2052925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007717.1\|WP_025198134.1\|2053003_2053660_+\|ATP-synthase-subunit-E	unknown	unknown	gnl\|CDD\|237082
NZ_CP007717.1\|WP_004689577.1\|2065808_2067020_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP007717.1\|WP_004689571.1\|2052045_2052687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007717.1\|WP_002971512.1\|2050813_2051902_+\|porin	unknown	unknown	gnl\|CDD\|308243
NZ_CP007717.1\|WP_002963789.1\|2053722_2055780_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP007717.1\|WP_002963791.1\|2057227_2057704_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP007717.1\|WP_004689575.1\|2063154_2063910_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236494
NZ_CP007717.1\|WP_002963795.1\|2059514_2059916_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP007717.1\|WP_002971501.1\|2067271_2068111_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP007717.1\|WP_004689574.1\|2058542_2059118_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP007717.1\|WP_002963792.1\|2057840_2058512_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381681
NZ_CP007717.1\|WP_004689568.1\|2047679_2048606_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP007717.1\|WP_004689569.1\|2048879_2049983_-\|porin	unknown	unknown	gnl\|CDD\|308243
NZ_CP007717.1\|WP_004689576.1\|2064290_2065625_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|237356

Protein	Function_ID	Function_description	E-value
NZ_CP007717.1\|WP_002963797.1\|2062416_2062995_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	2.00708e-76
NZ_CP007717.1\|WP_004689567.1\|2046183_2047317_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181255	PRK08153, PRK08153, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP007717.1\|WP_004689578.1\|2068160_2068736_+\|DUF2062-domain-containing-protein	gnl\|CDD\|225757	COG3216, COG3216, Uncharacterized protein conserved in bacteria [Function unknown].	8.19559e-83
NZ_CP007717.1\|WP_004689573.1\|2056255_2057137_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.51802e-178
NZ_CP007717.1\|WP_004688165.1\|2060156_2062409_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP007717.1\|WP_025198134.1\|2053003_2053660_+\|ATP-synthase-subunit-E	gnl\|CDD\|237082	PRK12373, PRK12373, NADH-quinone oxidoreductase subunit E.	2.52091e-28
NZ_CP007717.1\|WP_004689577.1\|2065808_2067020_-\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.24113e-108
NZ_CP007717.1\|WP_002963792.1\|2057840_2058512_-\|uracil-DNA-glycosylase	gnl\|CDD\|381681	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins. Uracil DNA glycosylase family 5 includes Thermus thermophilus HB8 TTUDGB (also called UDGb) which is not only a UDG acting on double-stranded uracil-containing DNA, but also a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA (except for the C/I base pair), as well as a xanthine DNA glycosylase acting on both, double-stranded and single-stranded xanthine-containing DNA. TTUDGB also excises thymine from G:T mismatched DNA, and removes analogs of uracil from DNA, including 5-hydroxymethyluracil (hmU) and 5-fluorouracil (fU). This subfamily also contains Bradyrhizobium diazoefficiens family 5 homolog Blr5068 (UdgB) which has been found to efficiently excise uracil from ssDNA and dsDNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Similar to family 4 UDGs, members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	7.75632e-104
NZ_CP007717.1\|WP_002971512.1\|2050813_2051902_+\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	8.22091e-118
NZ_CP007717.1\|WP_002963789.1\|2053722_2055780_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.60661e-60
NZ_CP007717.1\|WP_002963791.1\|2057227_2057704_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.57135e-88
NZ_CP007717.1\|WP_004689575.1\|2063154_2063910_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236494	PRK09391, fixK, transcriptional regulator FixK; Provisional.	1.05854e-49
NZ_CP007717.1\|WP_002963795.1\|2059514_2059916_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.70484e-25
NZ_CP007717.1\|WP_002971501.1\|2067271_2068111_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.72308e-33
NZ_CP007717.1\|WP_004689574.1\|2058542_2059118_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.70372e-61
NZ_CP007717.1\|WP_004689568.1\|2047679_2048606_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.83023e-41
NZ_CP007717.1\|WP_004689569.1\|2048879_2049983_-\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	4.46283e-105
NZ_CP007717.1\|WP_004689576.1\|2064290_2065625_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|237356	PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.	0

>NZ_CP007717.1|WP_002963791.1|2057227_2057704_+|SsrA-binding-protein-SmpB
MNKPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELALARGKKTHDKRETEKKRDWNREKARLLRDRG
>NZ_CP007717.1|WP_004689573.1|2056255_2057137_+|4-hydroxy-tetrahydrodipicolinate-synthase
MLKGSITALVTPFDREGAFDEKAFRAFVNWQIEEGTKGLVPVGTTGETPTLSHDEHKRVIEVCIEVAAGRVPVIAGAGSNNTVEAIELAQHAEKAGADAVLVVTPYYNKPNQRGLYEHFSRVARSISIPLVIYNIPGRSIIDMTPETMGALVRDCKNIVGVKDATGKIERVSEQRAICGKEFIQLSGEDATALGFNAHGGVGCISVTSNIAPRLCAEFQEACQAGNFAKALELQDRLMPLHKALFLEPNPSGPKYALSRLGRIENVLRSPMVTIEAATAEKIDHAMKHAGLIN
>NZ_CP007717.1|WP_002963789.1|2053722_2055780_-|lytic-transglycosylase-domain-containing-protein
MVSLAQSSLPPEIPTPLARPFAPTATHQSPISLVTPRPRPIAPDPMATSAVSRTDNPAVIGGTLKNGLDALSAKNVASAIASRNNLPRGSLDRQILTWAIATSGMDGVPSTEIAAAASELSGWPGMATLRRNSERALFKENPSSATIIATFGSTRPQTTEGMIALARAYVATGNSTKAHQLLSPWWTRKRLSSDDEQKILKEFSAILTREDHQRRLLHSLYNGRLQSARLLAGPAQAQSLYNAYAAVAQKSPNAASAIAAVDRSWQANPVYQFLKIRYLRRAERYNEAAELLLKAPRKASVLVDPDAWWVERRILSRELLDLGKPQLAYRLAAAHAAETPTMAAEAEFHAGWYALRALNQPKLAAPHFAKITQISARPISASRAYYWLGRAAEAGSGGDARAYYRRSAHFGTTFYGQLAAAKLNEKAPELAYPKPTEAERVRFASRPAVQAIKRLEQVGYGNKAAALYTQLSQELDSVGELALLAVMAERNDNHYMALRVGKTAAMRGLDVGALSHPLGAIPASANIKGSGKALAYAIARQESEFNVSAVSKAGARGLLQLMPATAKTVATRNGMSFSAQKLTADAAYNATLGAHFLGEQLDRFNGSYVLTFAGYNAGPRRASEWVEKYGDPRGKSVEQVVDWIERIPYSETRNYVQRVMENYEVYKTRLTGRADIKTDLVYGRR
>NZ_CP007717.1|WP_025198134.1|2053003_2053660_+|ATP-synthase-subunit-E
MPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKPEPVPPAEPVRADSDPLKRKAGLEKARIEPVEGSADSDVAAAPVLQKVPAETPDDAGRPQWREAPRRGKADELMAIEGIGKAIEAVLHELGIFHYDQIAQWTREEAIWIERRIGFPGRVEREGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG
>NZ_CP007717.1|WP_002963787.1|2052742_2052925_+|hypothetical-protein
MTVFPIRPFLCYDYSAKGLKCLAKYYAESLMLYLVETFWPVLVLAILIGAATGWLTAGER
>NZ_CP007717.1|WP_004689571.1|2052045_2052687_+|hypothetical-protein
MKKWFWPCLTWTACLTALALWFGADRVETDIAEQTAKALEPYVWAGFYVDGRDVVLKGMAPDPDMQRAAHAALEHVWAIRDITDLTTVLQLASPYRFKIGRNAQGLVLSGFIPNNESRDQVMTAAGEVAPDIFIDDEMAVARGNQPEFMERVLFAIDLAKKLPEAEIEIVDQKLSIRGTVSDEAIYDEIEALKAAQLPYGLKLAVLDVKKSVQ
>NZ_CP007717.1|WP_002971512.1|2050813_2051902_+|porin
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYSGTDRNGWDKSARFALRVSTGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVIALEQGGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQKAAFNLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF
>NZ_CP007717.1|WP_004689569.1|2048879_2049983_-|porin
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRISGYVRYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATFNLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGIVRFQRSF
>NZ_CP007717.1|WP_004689568.1|2047679_2048606_-|site-specific-integrase
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCHLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVKVLEIH
>NZ_CP007717.1|WP_004689567.1|2046183_2047317_-|pyridoxal-phosphate-dependent-aminotransferase
MAQPRLTPLVESLPSTVPFIGPETLELQRGKPFKARIGANESSFGPAPSVIEAMRNEATEVWKYGDPENYALRHAIAAHHGLKAEHIMPGAGVDALLGLIVRQYVQQGDKVINSLGGYPTFNYHVAGYGGQLVTVPYRDDKPDLDALIDAAAREKPALLYIANPDNPMGTWHEGADIQSFIERLPETTLLILDEAYCETAPASAFPPFETDRPNVLRMRTFSKAYGLAGIRCGYAVGNPVAIKTFDKVRDHFAVSRMAQAAAIAALKDQAYLHEVVGKICAGRDRIAAIAEANGLHAVASATNFVAIDCGRGKDFAQAVLNGLISRDIFVRKPGTPVLDRCIRVSVGVKEQLDQFEAAFPEALEEARKICAANAENT
>NZ_CP007717.1|WP_002963792.1|2057840_2058512_-|uracil-DNA-glycosylase
MISEPSPNCSICPRLHAFLQEWRQKEPAWHNAPVPPFLPGSDEDVRLLIVGLAPGLRGANRTGRPFTGDYAGELLYSTLCEFGFATGKFEARPDDSLRLLDACIVNAVRCVPPENKPVGSEINNCRQFLTPMLTRFPNLDAVVTLGTIAHQSTVRALGVPVSRHPFGHGKATDIGPLRIFSSYHCSRYNTNTGVLTDAMFRDVFKNVRAYLSEKAAGSARLSV
>NZ_CP007717.1|WP_004689574.1|2058542_2059118_-|NYN-domain-containing-protein
MFDSREKIALFINGANLYTASKTLGFDIDYRKLLKAFQKRGYLLRAYYYTALVEDQEYSSIRPLIDWLDYNGYKVVTKAAKEFTDSTGRRKVKGNMDLELTVDAMQLTDTVDHFVIFSGDGDFRSLVEALQRKGRKVSVVSTLTTQPAMISDELRRQADHFIDLVSLKAEIGRDPSERAPRRQEEDFDESY
>NZ_CP007717.1|WP_002963795.1|2059514_2059916_+|DNA-directed-RNA-polymerase-subunit-omega
MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAGIEGLVAPEKNDGF
>NZ_CP007717.1|WP_004688165.1|2060156_2062409_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MMRQYELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLEKNRGLLQKIETDLSEIFEKNGIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQTIEQLSEGDNPEEFLEHTKLELFQDQVFCFTPKGRLIALPRGATPIDFAYAVHTDIGDSCVGAKVNGRIMPLMTELKNGDEVDIIRSKAQVPPAAWESLVATGKARAAIRRATRSAVRKQYSGLGMRILERAFERAGKPFSKDILKPGLPRLARKDVEDVLAAVGRGELPSTDVVKAVYPDYQDTRVTTQNNPAKAGEKGWFNIQNAAGMIFKVPEGGEGAAAKVDPAATTPKPGKRALPIRGTNPDLPVRFAPEGAVPGDRIVGILQPGAGITIYPIQSPALTAYDDQPERWIDVRWDIDDQMSERFPARISVSAINSPGSLAEIAQIAAANDANIHNLSMVRTAPDFTEMIIDVEVWDLKHLNRIISQLKESASVSSAKRVNG
>NZ_CP007717.1|WP_002963797.1|2062416_2062995_+|orotate-phosphoribosyltransferase
MNTDDVLAVFREAGAILEGHFILTSGLRSPVFLQKARVFMHADKTEKLCKALAEKIRAADLGPIDYVVGPAIGGLIPSYETSRHLGVPSVWVERENGVFRLRRFDVPKGARVVIVEDIVTTGLSIRETIDCMKDLGIEVVAAACIVDRSAGKADVGTRLISLAEYEVPAYPADKLPPELAAIPAVKPGSRNI
>NZ_CP007717.1|WP_004689575.1|2063154_2063910_+|helix-turn-helix-domain-containing-protein
MVVVPFALDQNQKLAARTPCNVCEDCCVRSMAVCSALDDGDLAALEAIMTSKKLDTNEMLVEEGEPKLRVYSLTSGMLRIYTSLPDGRRQIAGFLFPGDFLGLADDEVYSQSAEAVVPSALCAFSAKEMERLMERFPKLKERLYQMTRLALRTARDNQLVLGRLAPVEKLASFLLVLSARAEKRGEKPNPVHLLMNRTDIADYLGLTIETVSRSFTKLKTQGLIQLRDANTVEILSRRSLAVVAGLDPDNL
>NZ_CP007717.1|WP_004689576.1|2064290_2065625_+|oxygen-independent-coproporphyrinogen-III-oxidase
MHDDAIRRYAALAVPRYTSYPTAADFVPVGMDTTRRWLRQIGPEESVSLYIHVPYCSQICHYCGCNAKMAIREDVIENFVNALLGEIRTVSASLTARPRVDHLHWGGGTPSILNAGQFQTVLAAIRTAFDFDLSMEHAIELDPRTVTPLLAKTLAEMGVNRASLGVQDVDSRVQMAIGRVQPIETVAEATRLLREVGINRINFDLIYGLPLQTVETLRETCERVVTLSPDRVACYGYAHLPQRRANQRLIDENTLPDADERFRQARIVADSFIGFGYQPVGIDHFALPDDDLAIAAREGTLNRNFQGYTNDRCETLIGFGPSSISQFPGGYAQNISDVGQYRKRVEAGELATVRGYTLRDTDRIRSAIISALMCNFCVDLNAVAPGMEFSDEFALLRPLVADGLVAVEGRTIRATENGKSLIRLVAAAFDEFRRDSVHGFSFAV
>NZ_CP007717.1|WP_004689577.1|2065808_2067020_-|MFS-transporter
MSVSAAQQPSNSSADNTVLTIILATSLGHFLNDMMQSLLPAIYPMLKENYSLSFWQIGLLTFTFQMTASILQPLVGIYTDRKPMPYSLTFGMGCTLIGLVFLATAHHYSFLLLGAACVGLGSSVFHPEAARVARLASGGRHGFAQSLFQVGGNFGSSIGPLLAAFIVLPFGQISISWFSVAALIGMFVLWYVGNWYNRYRLANASKPKPDKTLPLPRNRVIASVAVLALLVFTKYIYMASLTSYYTFYTISHFGVSVQTSQLLLFLFLGAVAAGTIIGGPIGDKIGARKVIWASILGVLPFTLALPYANLEMTAVLTIIIGLILASAFPAIIVFAQELLPGRVGMVSGLFFGFAFGMAGIAAAVLGIVADQKGIEFVYRICSYLPFLGLLTIFLPKLERRRKA
>NZ_CP007717.1|WP_002971501.1|2067271_2068111_+|helix-turn-helix-transcriptional-regulator
MPENEDLQRFHEHRIAMLESMTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGVEHSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGLVIELILRDLHTLPEYPLGLPFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTRHFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPPKFYQPRLDVAPFERSDKAAFG
>NZ_CP007717.1|WP_004689578.1|2068160_2068736_+|DUF2062-domain-containing-protein
MLFQRRYPPTRWERLRLYLWPRRSFSRSFRYGGKRILRITASPHAVAAGLAVGVFSAFTPFFGFHLIIAIVLAYFLAGNVAAAALGTTLANPLTLPFIWGSTFELGRFIMSGSVDSVPPAHLGHALETMRFEEVWTPLLKPMLFGSTILGAAFAVLVYFVTRYAVSVFRRRRLERLAEKHRLHRQRELQKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007717_1	1.1\|2057745\|27\|NZ_CP007717\|CRISPRCasFinder	2057745-2057771	27	NZ_CP013986	Klebsiella variicola strain LMG 23571 plasmid unnamed, complete sequence	45587-45613	5	0.815

1. spacer 1.1|2057745|27|NZ_CP007717|CRISPRCasFinder matches to NZ_CP013986 (Klebsiella variicola strain LMG 23571 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

ataagatgcgcgcaaggaaagatctgt	CRISPR spacer
aacagatgctctcaaggaaagatctga	Protospacer
*  ****** * **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

140519 : 152446

uncultured_Mediterranean_phage(90.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004689636.1\|140519_141371_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.8e-31	33.3
WP_002964011.1\|141363_142089_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|142234_142453_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_025198141.1\|142563_143145_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1\|143141_143966_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002964015.1\|144042_145326_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_004683703.1\|145474_146242_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_004683704.1\|146238_146907_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-14	38.5
WP_002964018.1\|147051_147237_+	hypothetical protein	NA	NA	NA	NA
WP_002964019.1\|147285_148584_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1\|148632_149499_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1\|149658_150000_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_080544157.1\|150118_152446_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

DBSCAN-SWA_2

225903 : 234256

Brucella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006072696.1\|225903_226623_+	hypothetical protein	A0A076GD06	Sinorhizobium_phage	4.6e-05	46.8
WP_002964091.1\|226619_226850_+	hypothetical protein	NA	NA	NA	NA
WP_002964092.1\|226846_227122_+	hypothetical protein	NA	NA	NA	NA
WP_004683738.1\|227144_227732_+	hypothetical protein	NA	NA	NA	NA
WP_004689672.1\|227966_228677_+	porin family protein	O11861	Bartonella_henselae_phage	2.5e-40	36.5
WP_002964095.1\|229024_229195_-	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	3.1e-05	45.1
WP_002964097.1\|229542_229857_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.9e-06	43.4
WP_004688321.1\|229856_230102_-	hypothetical protein	NA	NA	NA	NA
WP_002967634.1\|231701_232475_+	hypothetical protein	A0A141GEY5	Brucella_phage	1.3e-122	97.8
WP_004689673.1\|232609_234256_+	hypothetical protein	A0A141GEY6	Brucella_phage	1.3e-175	62.0

DBSCAN-SWA_3

1880565 : 1945137

Tupanvirus(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004689505.1\|1880565_1881978_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002963624.1\|1882119_1882746_-	invasion associated locus B family protein	NA	NA	NA	NA
WP_002963625.1\|1883146_1884034_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_004689506.1\|1884171_1885830_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	3.2e-09	36.3
WP_004683128.1\|1886057_1887005_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_004683131.1\|1887004_1887190_+	hypothetical protein	NA	NA	NA	NA
WP_004683133.1\|1887209_1887815_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_002963630.1\|1888023_1888902_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_004688061.1\|1889015_1889399_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_004683138.1\|1889395_1890145_+	SURF1 family protein	NA	NA	NA	NA
WP_002963633.1\|1890253_1891294_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_004690619.1\|1891299_1892280_+	homoserine kinase	NA	NA	NA	NA
WP_002963635.1\|1892276_1892741_+	ribonuclease HI	J9Q745	Salmonella_phage	1.7e-40	53.6
WP_002963636.1\|1892770_1893256_-	peroxiredoxin	M1I839	Pelagibacter_phage	3.0e-24	46.8
WP_002963637.1\|1893435_1894236_-	hypothetical protein	NA	NA	NA	NA
WP_004683145.1\|1894370_1894973_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_004690621.1\|1895086_1897981_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002963640.1\|1897977_1898598_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_025198123.1\|1898768_1899971_-	insulinase family protein	A0A2K9L1M6	Tupanvirus	2.7e-34	28.4
WP_004689511.1\|1900024_1901416_-	threonine synthase	NA	NA	NA	NA
WP_004689513.1\|1901837_1902416_+	hypothetical protein	NA	NA	NA	NA
WP_004691963.1\|1902729_1904364_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002963647.1\|1904492_1904678_+	hypothetical protein	NA	NA	NA	NA
WP_004689514.1\|1904719_1905406_-	HAD family phosphatase	NA	NA	NA	NA
WP_004689515.1\|1905553_1907344_-	chloride channel protein	NA	NA	NA	NA
WP_004689516.1\|1907680_1908814_+	site-specific DNA-methyltransferase	A0A249XUJ2	Enterococcus_phage	4.7e-28	30.4
WP_002963651.1\|1908896_1909514_-	HAD family phosphatase	NA	NA	NA	NA
WP_004683167.1\|1909510_1910587_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002971552.1\|1910552_1910699_-	hypothetical protein	NA	NA	NA	NA
WP_004689517.1\|1910860_1911388_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002971551.1\|1911625_1912279_+	DsbA family protein	NA	NA	NA	NA
WP_004689518.1\|1912357_1915816_+	chromosome segregation protein SMC	NA	NA	NA	NA
WP_004686567.1\|1915838_1916732_+	cation transporter	NA	NA	NA	NA
WP_002967466.1\|1916841_1917183_-	glyoxalase	NA	NA	NA	NA
WP_006072289.1\|1917446_1920110_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	3.1e-91	41.7
WP_004688079.1\|1920342_1921167_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_004683182.1\|1921385_1921790_-	hypothetical protein	NA	NA	NA	NA
WP_002963662.1\|1922143_1922932_+	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_005969743.1\|1922932_1923838_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002967469.1\|1924038_1924638_+	biotin transporter BioY	NA	NA	NA	NA
WP_004688080.1\|1924791_1925301_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_004689520.1\|1925312_1925669_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002963667.1\|1925739_1926576_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	1.5e-39	45.2
WP_004691955.1\|1927112_1928981_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	4.2e-18	28.4
WP_002963669.1\|1928967_1929975_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_129171622.1\|1929856_1930129_+	hypothetical protein	NA	NA	NA	NA
WP_006275095.1\|1930633_1931452_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_077281772.1\|1932063_1932414_+\|transposase	transposase	NA	NA	NA	NA
WP_002963675.1\|1933841_1934621_-	LPS biosynthesis N-formyltransferase WbkC	E3SNR5	Prochlorococcus_phage	3.3e-09	31.4
WP_004688086.1\|1934647_1935502_-	hypothetical protein	NA	NA	NA	NA
WP_002963677.1\|1935498_1936257_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_004683211.1\|1936253_1937036_-	ABC transporter permease	NA	NA	NA	NA
WP_002963679.1\|1937050_1938154_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	3.5e-44	31.9
WP_024767981.1\|1938161_1939253_-	GDP-mannose 4,6-dehydratase	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	4.5e-137	68.9
WP_032448459.1\|1940375_1941314_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_080723468.1\|1941383_1942140_+\|transposase	IS5-like element IS711 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.8e-15	40.2
WP_002963682.1\|1942511_1943630_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_080723655.1\|1944387_1944540_-	hypothetical protein	NA	NA	NA	NA
WP_006072314.1\|1944582_1945137_-\|transposase	IS3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP007716

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007716_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007716_1

193503-193601

Orphan

Consensus_repeat	Method
GCGGCATGGACTTCTAAGAAGTCCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007716_1

>merge|NZ_CP007716|1|193503-193601|CRISPRCasFinder
GCGGCATGGACTTCTAAGAAGTCCATAAAGCTCGCCCATGAACTAAATGCCTGCGCCGCAAAGCGGCGCGGGTGCGGCATGGACTTCCAAGAAGTCCAT

>NZ_CP007716|1|1|193503-193601|CRISPRCasFinder
GCGGCATGGACTTCTAAGAAGTCCAT	AAAGCTCGCCCATGAACTAAATGCCTGCGCCGCAAAGCGGCGCGGGT
GCGGCATGGACTTCCAAGAAGTCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007716.1\|WP_002966383.1\|189084_190074_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP007716.1\|WP_002966386.1\|191491_191788_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP007716.1\|WP_002966390.1\|194676_196068_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP007716.1\|WP_002966393.1\|198167_198863_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NZ_CP007716.1\|WP_004688849.1\|196856_198095_+\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP007716.1\|WP_002966380.1\|184054_184615_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP007716.1\|WP_004688853.1\|185822_188741_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP007716.1\|WP_004688855.1\|181097_181661_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP007716.1\|WP_002971287.1\|184959_185631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007716.1\|WP_025198034.1\|179467_181012_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP007716.1\|WP_004681424.1\|201617_202235_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP007716.1\|WP_002966379.1\|183527_184001_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP007716.1\|WP_006015192.1\|194271_194526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007716.1\|WP_006170632.1\|190161_191010_-\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP007716.1\|WP_004688854.1\|181641_183387_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP007716.1\|WP_025198033.1\|198859_199990_-\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NZ_CP007716.1\|WP_004688847.1\|199998_201507_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP007716.1\|WP_002966398.1\|203249_203984_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NZ_CP007716.1\|WP_002967189.1\|202353_203010_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP007716.1\|WP_002966391.1\|196170_196572_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
NZ_CP007716.1\|WP_002966383.1\|189084_190074_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NZ_CP007716.1\|WP_002966386.1\|191491_191788_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NZ_CP007716.1\|WP_002966390.1\|194676_196068_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP007716.1\|WP_002966393.1\|198167_198863_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
NZ_CP007716.1\|WP_004688849.1\|196856_198095_+\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.04538e-166
NZ_CP007716.1\|WP_002966380.1\|184054_184615_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	3.34911e-53
NZ_CP007716.1\|WP_004688853.1\|185822_188741_-\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP007716.1\|WP_004688855.1\|181097_181661_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	3.95534e-78
NZ_CP007716.1\|WP_025198034.1\|179467_181012_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.90529e-117
NZ_CP007716.1\|WP_004681424.1\|201617_202235_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.14786e-45
NZ_CP007716.1\|WP_002966379.1\|183527_184001_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NZ_CP007716.1\|WP_006170632.1\|190161_191010_-\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.1377e-90
NZ_CP007716.1\|WP_004688854.1\|181641_183387_-\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.07404e-82
NZ_CP007716.1\|WP_025198033.1\|198859_199990_-\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.9116e-156
NZ_CP007716.1\|WP_004688847.1\|199998_201507_-\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	5.61254e-159
NZ_CP007716.1\|WP_002966398.1\|203249_203984_+\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.69228e-59
NZ_CP007716.1\|WP_002967189.1\|202353_203010_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NZ_CP007716.1\|WP_002966391.1\|196170_196572_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20

>NZ_CP007716.1|WP_002966386.1|191491_191788_+|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP007716.1|WP_006170632.1|190161_191010_-|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRSRNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NZ_CP007716.1|WP_002966383.1|189084_190074_-|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NZ_CP007716.1|WP_004688853.1|185822_188741_-|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPIRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFAYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NZ_CP007716.1|WP_002971287.1|184959_185631_-|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NZ_CP007716.1|WP_002966380.1|184054_184615_-|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVHHFALRDDTLRYMTGHGTPN
>NZ_CP007716.1|WP_002966379.1|183527_184001_+|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NZ_CP007716.1|WP_004688854.1|181641_183387_-|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDRDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSEGGGADRRR
>NZ_CP007716.1|WP_004688855.1|181097_181661_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGSWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NZ_CP007716.1|WP_025198034.1|179467_181012_-|insulinase-family-protein
MNNPSLRRLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAQAALPEISRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLKHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANVKPGDAPALDLLSEILGGSQLSRLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ
>NZ_CP007716.1|WP_006015192.1|194271_194526_+|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDSKTQRKIEPTAWIRETDDDESQED
>NZ_CP007716.1|WP_002966390.1|194676_196068_+|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NZ_CP007716.1|WP_002966391.1|196170_196572_+|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NZ_CP007716.1|WP_004688849.1|196856_198095_+|sugar-MFS-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKLPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NZ_CP007716.1|WP_002966393.1|198167_198863_-|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NZ_CP007716.1|WP_025198033.1|198859_199990_-|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDTRSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDTAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NZ_CP007716.1|WP_004688847.1|199998_201507_-|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NZ_CP007716.1|WP_004681424.1|201617_202235_-|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NZ_CP007716.1|WP_002967189.1|202353_203010_-|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NZ_CP007716.1|WP_002966398.1|203249_203984_+|L,D-transpeptidase
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAPARPRIARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTRVVVR

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Crispr_ID: NZ_CP007716_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007716_2

349909-350118

Orphan

Consensus_repeat	Method
CGACGCCATGAAAGGCGACGCAATGAAAGGCGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP007716_2

>merge|NZ_CP007716|2|349909-350118|CRISPRCasFinder
CGACCATATGAAGTCGGACGCGATGAAGAGCGATAATATGTCAAAGGATGCCATGGGCAAGGAAGATGCCATGAAGGGCGATGCCATGCACAAGGATTCCAAGAAAATGAAGAAGCACGACGCCATGAAAGGCGACGCAATGAAAGGCGATGCGATGAAAGGCGATGCGATGAAAGGCGACGCCATGAAAGGTGACGCAATGAAAGGCGA

>NZ_CP007716|2|2|349909-350118|CRISPRCasFinder
CGACCATATGAAGTCGGACGCGATGAAGAGCGA	TAATATGTCAAAGGATGCCATGGGCAAGGA
AGATGCCATGAAGGGCGATGCCATGCACAAGGA	TTCCAAGAAAATGAAGAAGCA
CGACGCCATGAAAGGCGACGCAATGAAAGGCGA	TGCGATGAAAGGCGATGCGATGAAAGG
CGACGCCATGAAAGGTGACGCAATGAAAGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007716.1\|WP_004688790.1\|357163_357940_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
NZ_CP007716.1\|WP_004687598.1\|358626_359235_-\|DUF922-domain-containing-Zn-dependent-protease	unknown	unknown	gnl\|CDD\|227951
NZ_CP007716.1\|WP_004688798.1\|341198_341936_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP007716.1\|WP_002966556.1\|346157_347408_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380552
NZ_CP007716.1\|WP_025198022.1\|359478_360585_+\|BMP-family-protein	unknown	unknown	gnl\|CDD\|380619
NZ_CP007716.1\|WP_004688796.1\|343941_345123_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226645
NZ_CP007716.1\|WP_002966555.1\|345126_346068_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_CP007716.1\|WP_004687595.1\|353338_354514_+\|isochorismate-synthase-MenF	unknown	unknown	gnl\|CDD\|224091
NZ_CP007716.1\|WP_002968215.1\|347690_348431_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP007716.1\|WP_025198023.1\|354620_356240_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP007716.1\|WP_025198025.1\|343189_343942_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP007716.1\|WP_004688792.1\|351021_351810_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP007716.1\|WP_002966562.1\|351857_353198_-\|condensation-protein	unknown	unknown	gnl\|CDD\|236668
NZ_CP007716.1\|WP_004681171.1\|341939_342422_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP007716.1\|WP_004688794.1\|349101_349626_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237132
NZ_CP007716.1\|WP_002968213.1\|350215_351025_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP007716.1\|WP_004688795.1\|348476_349112_-\|DUF1109-family-protein	unknown	unknown	gnl\|CDD\|227280
NZ_CP007716.1\|WP_002968219.1\|342473_343190_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP007716.1\|WP_002967156.1\|357914_358655_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP007716.1\|WP_002967157.1\|356291_357164_+\|isochorismatase	unknown	unknown	gnl\|CDD\|224452

Protein	Function_ID	Function_description	E-value
NZ_CP007716.1\|WP_004688790.1\|357163_357940_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	6.69629e-150
NZ_CP007716.1\|WP_004687598.1\|358626_359235_-\|DUF922-domain-containing-Zn-dependent-protease	gnl\|CDD\|227951	COG5664, COG5664, Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones].	7.01789e-120
NZ_CP007716.1\|WP_004688798.1\|341198_341936_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.47794e-84
NZ_CP007716.1\|WP_002966556.1\|346157_347408_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380552	cd06329, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs). Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.	5.04736e-153
NZ_CP007716.1\|WP_025198022.1\|359478_360585_+\|BMP-family-protein	gnl\|CDD\|380619	cd19964, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Aeropyrum pernix K1 and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Aeropyrum pernix K1 and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	1.17488e-95
NZ_CP007716.1\|WP_004688796.1\|343941_345123_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226645	COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].	5.16075e-54
NZ_CP007716.1\|WP_002966555.1\|345126_346068_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	2.03765e-60
NZ_CP007716.1\|WP_004687595.1\|353338_354514_+\|isochorismate-synthase-MenF	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.58776e-175
NZ_CP007716.1\|WP_002968215.1\|347690_348431_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.62714e-65
NZ_CP007716.1\|WP_025198023.1\|354620_356240_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP007716.1\|WP_025198025.1\|343189_343942_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	7.0651e-114
NZ_CP007716.1\|WP_004688792.1\|351021_351810_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	7.73793e-94
NZ_CP007716.1\|WP_002966562.1\|351857_353198_-\|condensation-protein	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	6.21984e-81
NZ_CP007716.1\|WP_004681171.1\|341939_342422_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	5.32332e-14
NZ_CP007716.1\|WP_004688794.1\|349101_349626_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237132	PRK12539, PRK12539, RNA polymerase sigma factor SigF.	5.8945e-50
NZ_CP007716.1\|WP_002968213.1\|350215_351025_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.05302e-72
NZ_CP007716.1\|WP_004688795.1\|348476_349112_-\|DUF1109-family-protein	gnl\|CDD\|227280	COG4944, COG4944, Uncharacterized protein conserved in bacteria [Function unknown].	1.64284e-78
NZ_CP007716.1\|WP_002968219.1\|342473_343190_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	1.99537e-118
NZ_CP007716.1\|WP_002967156.1\|357914_358655_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	3.4061e-84
NZ_CP007716.1\|WP_002967157.1\|356291_357164_+\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	2.81978e-134

>NZ_CP007716.1|WP_004688794.1|349101_349626_-|sigma-70-family-RNA-polymerase-sigma-factor
MKALMLLALDGNSAAYRTLLEELSRLLKAYFVRRLFGGRVSEAEDLVQETLLAIHTRRMTYDREMTFLPWVNAIARHKLVDHLRRQGRHDTDVLDEDITIPGEAANVEARMDVDRMLGGVSERTAGLIRKVKIEGQSIDEAARAGDMSQSAVKVAIHRGLATLAQRFGGKKDDR
>NZ_CP007716.1|WP_004688795.1|348476_349112_-|DUF1109-family-protein
MTDDLINRLTGELKPVSRHAMQRLLLGHALLGMVAGVVIMLAFLGARHDLAAAMATPAFWSKLCYAALLLAVLLPALFALSRSLRQNLPWPALLLIFSCLGAAAIYQWEEASPEVRPVLVWGYTALVCPWLIGLISLPTLASLLLAIRKLAPARPTLAGFAAGLVSGGIGVLVYAFHCPESGLPFIALWYTLGIVGTGVLGALGGRFCLRW
>NZ_CP007716.1|WP_002968215.1|347690_348431_+|FadR-family-transcriptional-regulator
MKEIATRAAGRATGHLPEEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGVFVIDESNQKAFRIQPLVVEEAQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQIKRALIGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVIRQARTNTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRMKVYLSADNRTN
>NZ_CP007716.1|WP_002966556.1|346157_347408_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MSLKVFLQAGVACAALSLAGAAGASAEPLKIALVETLSGPQASTGLLYRAAVLYQLGKINEAGGFNGEKIQILEYDNQGGPVGAADRVKAAIADGAQIIVQGSSSAVAGQITEDVRKYNLRNKGKEVLYLNLGAEALELTGSKCHFYHFRFSPNAAIRFKTVAQGMKDKGILGERAYSINQNYSWGVDVENTVVANAKEIGYEVVDKTLHEVNKIQDFSPYVAKIQAANVDTVFTGNWSNDLLLLMKAASGAGLKAKFATSFLDQPGNIGNAGAIAEGHIVSTPFNPEANGEASMAFAEDYKKVTGHYPSYVEPAAVFGLQLFGEALKNVKPGEGKINTTDIALAIENASVKTPMGDYSMRSDDHQAKFPMVVQEVSKKARIKADGTEYGFLPFKTFTGDESIDPVQESCSMKRPG
>NZ_CP007716.1|WP_002966555.1|345126_346068_-|branched-chain-amino-acid-ABC-transporter-permease
MDQILFAVLNGAIYGLLLFMVSAGLTLIFGMMGVLNFAHASFYMMGAYFAYTLQPLTGFWLAILIAPVIVGIVGVLVERFILRRVHAFGHAHELLVTFGLSVVIAEVIKIFYGNFAVEYRIPAALQFSAFDLGGVSYPFYRLFIGAVALVMFLLIYLLLTRTRIGIVVRSAIYRPRMVEALGHNVPLVFMGVFGVGAFLAGLAGSVAGAFYTTNPNMALELGVMVFVVVVVGGLGSLGGAMFASLLIGILSSVAVGVKVSIASLLDYVGLGDYAREIGGVLTLEVSSIAATLPFFLMLIVLLVRPSGLFGAKE
>NZ_CP007716.1|WP_004688796.1|343941_345123_-|branched-chain-amino-acid-ABC-transporter-permease
MTIKQSVVALLVVALLVALPYLVSELMTNAAIQMLIAALFATAFSLLCGQAGMLSFGHAMNAFGGEGLLPTPLLPLAGAGVGLLSGLVAGWFSTKRTGVYFAMITLALAELLHALAPHLKGTFGGEAGVSSFRMPAWGFDFGSTTEVYYLALAWVVGSILLLFLLTLTPFGRVTVGLRENTHRLRFLGYNVHVLGTLVFAISAMFAGIAGALQAINIEAANYVVFEAGISTAVVLNSFIGGVGTFFGPAIGAAAMTFFGHVTSDVTRSWLLYQGLIFVLVMMFLPRGLVGEAVERFRNPKGTGISLGHALGRLVALLVTAAGTIMIVELVQRFFSSDYKALASAGNWPPVTFLGREWLPFAVSTWLIPLALFAAGIALLTIVNRHRAKAKGEA
>NZ_CP007716.1|WP_025198025.1|343189_343942_-|ABC-transporter-ATP-binding-protein
MTKDILVLDQLNKSFGPAHIIRGVNLAVRDGERHAVIGPNGAGKSTLFHLISGNFTPSSGSIRFQGEEIGGLTPAAVNRKGLARSFQITNIFPGLTVFENIRLAVMRRYKVQFTFWRPVSSMRKVTAEVESLLEQVRLTARAYTLASQLSYSEQRSLEIGMTLASDPRLIILDEPMAGMSQEETDYTVDLIREITQNRTLMIVEHDMDVVFTLADRISVLVYGEIIATGTPKEIRENARVREAYLGEEAH
>NZ_CP007716.1|WP_002968219.1|342473_343190_-|ABC-transporter-ATP-binding-protein
MAAENILDVRELHAHYGKSHILQGVTFDLKKGEAISLLGRNGSGRSTTMKAIMGLVPPTSGEVLLNGKNLAGERSFKICRAGIGFVPEERETFLNLTVDENLQMGIQRGAEGATRWTVEQMFDYFPRLKERRNTRAGSLSGGEQQMLTMCRTLLGNPLVMLIDEPTEGLAPKIVAVVGEMIKDINRQGVSVVLVEQKLTIALKVSSRVCVMGHGRIVFEGTPDELTADEKLMEEWLAV
>NZ_CP007716.1|WP_004681171.1|341939_342422_-|VOC-family-protein
MTQMTAPLEVGLAVRDLKRMRAFYEGALGLSFVSEIHVGGEKAKVAAMSPDGYTVVRLQTAKGERIKLLQPDRLPQAGQAETGLILERAGASYLTFIVDDLKALVERLIEHGAQPLTGRDPIEVRPGTWLAFLHDPEGHIVEIVQYDDIAAYRPDLAEEK
>NZ_CP007716.1|WP_004688798.1|341198_341936_-|SDR-family-oxidoreductase
MKFEFENRTLVLTGANGGIGRAIAELFHASGANLVLTDLDREGLDAFAASLGSPERIATIKADASSADDAEKTVALAMERFGGIDFLVPSAGIYQAKPFAEMSDADWHRTISINLDGVFYLCKRALPALKEDSSIVTLASLAAYRGAYVNAHYGATKGAMVSMTRALSRELAPKTRVNGVAPGIIETPMTSELLKTRMDETMTQTPLKRLGKPSEIASVIAFLCSPAASFVTGETIQVNGGIYMA
>NZ_CP007716.1|WP_002968213.1|350215_351025_+|cytochrome-b/b6-domain-containing-protein
MGQLIYRQRLLTRLTHWIWAASIFFLLLSGLQIFNAHPTLYLGNESGFEYENAVLSIYAVPGDNGPQGRLDILGKTFDTTGVLGVSGTMETPRRQAFPPALTIPSYRDLATGRVVHFFFAWVLVATLLLWFTSSLFNGHLKDISPSFTDIRSLPRDFVEHLKFRFQHGKSYNPLQKLSYFLVLFGLFPLIVATGLAMSPGADSILPLSEWLGGRQTARTLHFVAMLLLVAFFIVHIAMVLAAGPFNELRSMISGWYRIDRTDEKTEKQS
>NZ_CP007716.1|WP_004688792.1|351021_351810_+|molybdopterin-dependent-oxidoreductase
MTGPRLSRRRFLTFTGMAGSAVLLSGCDAFDYLGSDDNAVRQVLEKANDLSYTVQRKLEGPGALAREYGESEIRQGQKPNGETNPSTEEYDRLRENAFADYRLEVHGLVEKPLSFSLNELHNMPARTQITRHDCVEGWSTIAKWTGVPLGHILALAKPKAGAHYVVFHCFDEVDTPQGPDLFYGSIDLIDAQHPQTILAYGLNGSALPVANGAPLRVRVERQLGYKMSKYVKSIELVSSFAAIQGGRGGYWEDQGYDWYGGI
>NZ_CP007716.1|WP_002966562.1|351857_353198_-|condensation-protein
MARIDFADGWMPLTLPQLDFWEEFSFHPDQPVSTVAHCVEIEGDVDVEKLLRAISQTVREAEVLSIRFSDEKEQGRPVQLCDPAHMPDVDFVDLSAFPDPRAEAGRRMETDLSAPLDLRRDRMSAHALYRIGARQYIWYIRAHHIIIDGYGLALIEQRCGQLYSHFCGQGESGHPFHPFASFIHEEDAYRASPRWEADRKFWQDYLDGPVRLPILDRGAEDYGEAGYHHDVAFRDDISIGLRAMAKATDIGWPDLLVLLSGLYLSRMLPMQGEDEGLTLWLPFMSRWGSVGAHMPGLLVNILPFHLEFDSGETLFSALRRNMDMLKKHRLHGRYRIEQISADRGLVSGSRFFFSPLINVLPFSTPQFAGCRVAREVLANGPGDGFNLTYRADVDGAGLTLKIEAASNMMDAQTFARIAAGLPAFLKASLAPHLIERPVSDLRRRLP
>NZ_CP007716.1|WP_004687595.1|353338_354514_+|isochorismate-synthase-MenF
MRTSALKYPTSDADHLIENNTDFSFASGNLKLAASGMREVIATPAIGGSNPDSTFQRAIAQAFERAARAGQRNPIVVGAIPFDPGEPSCLYVPEEMDWQEREPASGASAAAMPQLAGQRSVPDEAGFKHAVEHAIINFRLSDVRKAVLSVMRELTFADDIDVDAMLANLRAQNHDGYQFRVPLPGGGALVGVSPELLIHKDKGKIVSNPLAGSAKRMADPEADRKNADRLAKSEKDHYEHRLVIEDIRARLQPICTELDIPERPSLIHTAALWHLSTRIEGRLHDPDMTALQLACLIHPTPAVCGFPTERARRLIRFVEPFERGLFTGMVGWSDAEGNGEWVVTIRCGTVKGNLVRLFAGAGIVEASSPDSEWAEVQTKLGTMLRACGLSA
>NZ_CP007716.1|WP_025198023.1|354620_356240_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MTIEFTHWPPARERLYREKGYWIDKPLTRALEEQAAMRPDAPAILCGERRFTYAELDRLSSNLASRLAAASIGKGDTALVQLPNIAEFYIVFFALMKAGIAPVNALFSHRKLELGAYASQIEPRLLIGSRQHELFMDDAFARDLGKNLSAPLLTLFAGEADPASSLDHWIATPADKAVPFSPTGAGEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICALTPQTRFLCALPTAHNYPMSSPGALGVFHAGGCVVMAPNPEPLNCFSIIERHGVNMVALVPPAVALWLQATPDHLAALSSLKLVQVGGASFAEALARQVPQVLGCKLQQVFGMAEGLVNYTRLDDPDEIVFTTQGRPISPDDEIRIVDEDGEPVAEGQPGMLATRGPYTFCGYYRSPEHNAQVFDSEGFYYSGDVVQRTPEGYLRVVGRVKDQINRGGEKVAAEEIENLILLHPDVTHAALVAMQDELLGEKSCAFIVSRNPDLKPPVLRRHLLALGVAEYKLPDRIRLIETMPLTAVGKIDKKHLRKLSSPSSPG
>NZ_CP007716.1|WP_002967157.1|356291_357164_+|isochorismatase
MAIPKIADYPMPQKAGFPANKTNWQPDPARAVLLIHDMQRYFLRFYDANGPLMGDLIGNLVRLRNWAHENGVPVVYTAQPHEQPAGDRALLNDMWGPGLPAAAPEQQLIVDKLTPGATDTVLAKWRYSAFQRSDLLQRMKDWNRDQLIIGGIYAHIGCMVTAIDAFMNDIQPFMVGDAVADFSEEEHRLALKYVATRCGAVIDTASLIRKPATETTRDWLQKRVLELIEDETELDPQENLILYGLDSLQVMKLSAELKERGVAVGFDDLARVPTLAAWWDLIETKQKAAA
>NZ_CP007716.1|WP_004688790.1|357163_357940_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MVEAKSYPASWRFAGKRVIVTGAAQGIGRRVAERFLAEGATVIGLDRQAGEADAPFRLIRLDITDAAEVRAVSDGLKAEGKPLDILVNVAGVLKLGNSDRLSAEDWKTCMDVNASGPFHLLSQWVPVFRDQRHGAIVNVASNAAHVPRLNMAAYCASKAALASFSHCVALELAPYGVRCNVVSPGSTRTAMLGAMLNDPSGEAQLVRGLPEQFKLGIPLGKIAMPDDIANVILFLASDQAGHVTMQDIVVDGGATLGA
>NZ_CP007716.1|WP_002967156.1|357914_358655_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MAEQPLAHETAWLAPGAHGVSVITPWADLAADCCFVMARYSASKPLIDPSIPAPARAAPRRKAEFVAGQACAREALRLAGGPAVMPGRGDDHAPIWPPGMVGSISHSKGCAIAVAARQSRYLGLGIDIERLQTESSARKIAPQILGESELRQLPEAGRAFLVSLAFSAKESLFKALYPAVQQFQSFHAAAFSFDGDRQQACLELAVDWSAQWRRGQRFPIRFFCRDGFILTCTAIAAISCRSEMSG
>NZ_CP007716.1|WP_004687598.1|358626_359235_-|DUF922-domain-containing-Zn-dependent-protease
MRKAAVLSVLGFLAASQVMVENGWAEDGWKAVEIVKPYAIAGTTPPELYESIGARGPKIGERRVIAHTSYVLTWDREFDRSNGACTVVSATPRLRITYTLPNPSQTLAPPVKERWDRFYDGIRRHELVHGDHAKAMTREIVRRTVGLSVPNDPKCRKIRKVLAKEITDMVQVQRAQGRDFDHVEMGNGGNVQQLILTFLNGN
>NZ_CP007716.1|WP_025198022.1|359478_360585_+|BMP-family-protein
MIKSTRRGIIHLAFALAASTAIGTFATSAAEAKDKIMLIVNGTLGDKSFFDSAANGMKMIKDKYGDEVETRILEIGDDPTKWEPVLLDASEQDWDLIIAGTYQMAETVGSVAQQYPDKKYILYDASVPYEEGSYDNVYSIQYKQNEGSYLGGLLAASLLKEGKLGDGAKNLGFLGGMDIPVINDFLVGYIAGAQSVIPDAKIAVSYAGSFMDAAKGKELGLAQYRSGVSLGFVVASQTGLGQLSAAKETGKYVLGVDSDQEAIFKDSDPAIAKQVVSSVLKNIDVSLLQAYERYKAGNLPFGKAEALGLKEGAVGIVQDGNMATMATPDIKDAIKKASDEISEGKITVPTAFGMSTEDLNAIRNKVRP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007716_2	2.3\|350059\|27\|NZ_CP007716\|CRISPRCasFinder	350059-350085	27	NC_014753	Oceanithermus profundus DSM 14977 plasmid pOCEPR01, complete sequence	123773-123799	5	0.815
NZ_CP007716_2	2.1\|349942\|30\|NZ_CP007716\|CRISPRCasFinder	349942-349971	30	KU682439	Stenotrophomonas phage vB_SmaS-DLP_6, complete genome	76616-76645	6	0.8
NZ_CP007716_2	2.1\|349942\|30\|NZ_CP007716\|CRISPRCasFinder	349942-349971	30	NZ_CP009119	Borreliella valaisiana Tom4006 plasmid lp54, complete sequence	31953-31982	8	0.733
NZ_CP007716_2	2.1\|349942\|30\|NZ_CP007716\|CRISPRCasFinder	349942-349971	30	MT787740	Bacteriophage sp. clone SASKD con44 putative head protein, hypothetical protein, major capsid protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds	1087-1116	8	0.733

1. spacer 2.3|350059|27|NZ_CP007716|CRISPRCasFinder matches to NC_014753 (Oceanithermus profundus DSM 14977 plasmid pOCEPR01, complete sequence) position: , mismatch: 5, identity: 0.815

tgcgatgaaaggcgatgcgatgaaagg	CRISPR spacer
gtagatgaaaggagatgcgatgaaacg	Protospacer
   ********* ************ *

2. spacer 2.1|349942|30|NZ_CP007716|CRISPRCasFinder matches to KU682439 (Stenotrophomonas phage vB_SmaS-DLP_6, complete genome) position: , mismatch: 6, identity: 0.8

taatatgtcaaaggatgccatgggcaagga	CRISPR spacer
gactgtgtcaaaggatgacatgggcaagtg	Protospacer
 * *.************ ********** .

3. spacer 2.1|349942|30|NZ_CP007716|CRISPRCasFinder matches to NZ_CP009119 (Borreliella valaisiana Tom4006 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.733

taatatgtcaaaggatgccatgggcaagga	CRISPR spacer
aaatatatcaaagtatgccatgggatctaa	Protospacer
 *****.****** **********    .*

4. spacer 2.1|349942|30|NZ_CP007716|CRISPRCasFinder matches to MT787740 (Bacteriophage sp. clone SASKD con44 putative head protein, hypothetical protein, major capsid protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds) position: , mismatch: 8, identity: 0.733

taatatgtcaaaggatgccatgggcaagga	CRISPR spacer
gaaggaagaaatggatgccatgggcaagga	Protospacer
 ** . .  ** ******************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007717

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007716

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection