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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007639 Salmonella enterica subsp. enterica serovar Choleraesuis strain C500 chromosome, complete genome 1 crisprs WYL,cas3,cas14j,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK 0 2 9 0

Results visualization

1. NZ_CP007639
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007639_1 3255148-3255481 TypeI-E I-E
5 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NZ_CP022021 Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence 72705-72736 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NZ_CP041212 Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence 56906-56937 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NC_022045 Listeria monocytogenes strain N1-011A plasmid, complete sequence 76500-76531 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NZ_CP014251 Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence 30149-30180 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NC_003383 Listeria innocua Clip11262 plasmid pLI100, complete sequence 23028-23059 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NZ_MH382833 Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence 11753-11784 9 0.719
NZ_CP007639_1 1.5|3255421|32|NZ_CP007639|CRT 3255421-3255452 32 NZ_CP020834 Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence 35903-35934 9 0.719
NZ_CP007639_1 1.1|3255177|32|NZ_CP007639|CRT 3255177-3255208 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP007639_1 1.1|3255177|32|NZ_CP007639|CRT 3255177-3255208 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688

1. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

2. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

3. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

4. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NZ_CP014251 (Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

5. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

6. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

7. spacer 1.5|3255421|32|NZ_CP007639|CRT matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

8. spacer 1.1|3255177|32|NZ_CP007639|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

9. spacer 1.1|3255177|32|NZ_CP007639|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 368431 : 409474 57 Salmonella_phage(50.91%) portal,coat,holin,lysis,integrase,protease,terminase attL 372277:372322|attR 412682:412727
DBSCAN-SWA_2 998395 : 1005708 7 Dickeya_phage(16.67%) protease,integrase attL 999646:999660|attR 1011081:1011095
DBSCAN-SWA_3 1046834 : 1155551 106 Salmonella_phage(33.9%) holin,tRNA,lysis,integrase,transposase,protease,tail,terminase attL 1052983:1052999|attR 1130076:1130092
DBSCAN-SWA_4 1300207 : 1348165 57 Enterobacteria_phage(31.91%) portal,holin,tRNA,capsid,integrase,transposase,tail,terminase,head attL 1304262:1304280|attR 1353261:1353279
DBSCAN-SWA_5 2270983 : 2280152 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_6 2746600 : 2791824 56 Salmonella_phage(75.0%) holin,lysis,integrase,tail,head attL 2767478:2767492|attR 2795185:2795199
DBSCAN-SWA_7 2809381 : 2819508 8 Salmonella_phage(62.5%) NA NA
DBSCAN-SWA_8 3241056 : 3247776 7 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_9 4310445 : 4330788 24 Burkholderia_phage(47.37%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage