CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009256	Acinetobacter baumannii strain AB31 chromosome, complete genome	3 crisprs	csa3,WYL,DEDDh,RT,cas3	1	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009256_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009256_1

1879661-1879824

Orphan

Consensus_repeat	Method
CGGTTATCATTTTGCTGTTGTTG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP009256_1

>merge|NZ_CP009256|1|1879661-1879824|CRISPRCasFinder
TGGTTGTTATTTGAGTTTTGTTGGCCAGAATCTTTTTGATTAGATCCTTGTTGTTGGCCGCGGTTATCATTTTGCTGTTGTTGCTGGTTATTTTGTTGCTGTTGATCGTTTTGCTGTTGGTTACCGTGTTGCTGTTGATTACGGTTGTCATTTTGCTGTTGTTG

>NZ_CP009256|1|1|1879661-1879824|CRISPRCasFinder
TGGTTGTTATTTGAGTTTTGTTG	GCCAGAATCTTTTTGATTAGATCCTTGTTGTTGGCCG
CGGTTATCATTTTGCTGTTGTTG	CTGGTTATTTTGTTGC
TGTTGATCGTTTTGCTGTTGGTT	ACCGTGTTGCTGTTGATTA
CGGTTGTCATTTTGCTGTTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009256.1\|WP_000373859.1\|1889793_1890249_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP009256.1\|WP_000132045.1\|1879227_1879545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_085940571.1\|1873147_1874431_+\|DcaP-like-protein	unknown	unknown	gnl\|CDD\|371763
NZ_CP009256.1\|WP_031999687.1\|1874475_1875714_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238868
NZ_CP009256.1\|WP_038405523.1\|1886532_1887762_+\|stress-induced-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP009256.1\|WP_000885235.1\|1889025_1889637_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP009256.1\|WP_001145672.1\|1880951_1882361_+\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP009256.1\|WP_085941183.1\|1882415_1884560_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP009256.1\|WP_000983534.1\|1885634_1886048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_000795915.1\|1887822_1888059_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_038405521.1\|1870467_1872162_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP009256.1\|WP_000432325.1\|1884614_1885493_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP009256.1\|WP_000498474.1\|1878921_1879143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_032000867.1\|1880156_1880636_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP009256.1\|WP_005111177.1\|1875825_1876731_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009256.1\|WP_001984002.1\|1876732_1877023_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_038405522.1\|1877992_1878136_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_001136759.1\|1878405_1878834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_001124839.1\|1888341_1888953_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP009256.1\|WP_031999688.1\|1872232_1872904_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_CP009256.1\|WP_085940571.1\|1873147_1874431_+\|DcaP-like-protein	gnl\|CDD\|371763	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB. MtrB-PioB is a family of bacterial putative outer membrane porins. This family, is secreted as part of the pio (phototrophic iron oxidation) operon that has been found to couple the oxidation of ferrous iron [Fe(II)] to reductive CO2 fixation using light energy. PioABC is found in Rhodopseudomonas palustris and MtrB-PioB is likely to be a beta-barrel porin. Similar to other outer membrane porins, PioB and MtrB are predicted to have long loops protruding into the extracellular space and short turns on the periplasmic side.	0.000221422
NZ_CP009256.1\|WP_031999687.1\|1874475_1875714_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	6.51476e-94
NZ_CP009256.1\|WP_038405523.1\|1886532_1887762_+\|stress-induced-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.85193e-19
NZ_CP009256.1\|WP_001145672.1\|1880951_1882361_+\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	1.79532e-18
NZ_CP009256.1\|WP_085941183.1\|1882415_1884560_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP009256.1\|WP_038405521.1\|1870467_1872162_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP009256.1\|WP_000432325.1\|1884614_1885493_-\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.33703e-161
NZ_CP009256.1\|WP_032000867.1\|1880156_1880636_-\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	2.73731e-21
NZ_CP009256.1\|WP_005111177.1\|1875825_1876731_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.79456e-71
NZ_CP009256.1\|WP_001124839.1\|1888341_1888953_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.03039e-39
NZ_CP009256.1\|WP_000373859.1\|1889793_1890249_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	9.46572e-40
NZ_CP009256.1\|WP_000885235.1\|1889025_1889637_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.28002e-23
NZ_CP009256.1\|WP_031999688.1\|1872232_1872904_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.66704e-19

>NZ_CP009256.1|WP_000132045.1|1879227_1879545_-|hypothetical-protein
MTDQNTDHAQLVAGDHNYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NZ_CP009256.1|WP_000498474.1|1878921_1879143_+|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEIFDDPILANQYLSHNFNMPPFF
>NZ_CP009256.1|WP_001136759.1|1878405_1878834_+|hypothetical-protein
MPQYLKIAEKIYQNVKEKKGFTDDPMEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NZ_CP009256.1|WP_038405522.1|1877992_1878136_+|hypothetical-protein
MVRIFCAVSIVLAIAMGMSACQDRNSKNDGMHEASDPATSHDMNKNS
>NZ_CP009256.1|WP_001984002.1|1876732_1877023_-|hypothetical-protein
MFFLYRFVLVSLLTIGVLNLMGCRPMSKNEFNTRCVWAGHDLSACNCIYNSLEQHYSPQFVESLPKLSLQNIDAKMNFVETMNQTMQQCQLSASKH
>NZ_CP009256.1|WP_005111177.1|1875825_1876731_+|LysR-family-transcriptional-regulator
MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQAVTANHIPKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPLKSSNLVARSLGSTYKQYVCSPVYIEKYGCPEHPDELHEHQLLDVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLALAGTGIAQLNEFQTRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFLVEHASIN
>NZ_CP009256.1|WP_031999687.1|1874475_1875714_-|SGNH/GDSL-hydrolase-family-protein
MKFYQATLFSLVLFTSFAQADAENSQWITTWSASPQKVWNKDFVFPTLIPEQVSNQTIRQMSKISLGGEAVRLVFTNQYGKQPLYIDQTTIGLANAVTLKSKSTYPVYFSGQLKARILPGKQLISDPIQLPVPDHAQLVVNSFIQKPTMFKTFHWDAKQTIWLISGNQTTHFTTPTDAKTTTARLLLSAIEVKPKQKAHVVAVVGDSITDGATATLDANTRWTDFLAKRLSAHQLAVINSGISGNRLLTDGMGDSVLKRLNSEIFQYSGVKTLIVLIGINDISWPGTAFAPKQQIPSFEALTEGYRRVVSEAHKHNIQVIGATLLPFSGALPNTPLDNYYQPNKDQLRQRINHWMRTSHTFDGVLDLDEGLKDPKHPNRLNPIYDSGDHLHPNDRGNQHMAELVDLDQIIKN
>NZ_CP009256.1|WP_085940571.1|1873147_1874431_+|DcaP-like-protein
MKILNTTVQKSLLAVSVTLLMSSAFADQVNPEIEQLRQEIKELRAMLQTNMEAQKSLAQKRVEQAAPVVTQAPQPIQQTLTKSGAEFNLYGYIRADASYQIKGASTMYNNISGVPLENTPEESAQKDQLHSTVYVTRFGLNFKTPTAVGDVGGKLEMDFFGAATRDQFRIRHAYLTFDKWLIGQTWSTFIAPEYYPETIDAGTFVGSALLRSPLVRYSDNLTANTSFAVSVEDPKYTAATDPDNKMRLPALVGRLNHKFANGSMLSGRSFVAEKRTNNDSEWAWGVGLGGKYQITPDTLLKADYYHVKGDGRFLLWSNSGYAIDDQNNMHSNEFDTVSLGITHQFTPQIRSTLGYGYMKAKDDNRFAELQRTNTTQNKQLWQGWVNALYNPYKPITLGIEYVYGERETFDNRNGIDNRFNMIASYDF
>NZ_CP009256.1|WP_031999688.1|1872232_1872904_+|class-I-SAM-dependent-methyltransferase
MAKDFNSPKVVEGYDAHIRKLIPGYEVIHQQVDAILQSVLPPDAHILIVGCGTGYELDYLLKRHPNWQFTAVDPSLTMLQKAQEQVEILGKSTQVTFVHGETSALPLENCFDAALSILVAHFIADDIKPAFFKDIYDRLKEKAPLLTYDLMTCVHPQQLQTLRYLCLAQGLTEEQCQKMLERMAEDFFSLTTEGYIKLLEKTGFESVQPYTQILTYQGFIAKK
>NZ_CP009256.1|WP_038405521.1|1870467_1872162_+|AMP-binding-protein
MQQERLSYASGPSTQPLLGMTIGEQFDQACQQYAEKEAIVSFHQNRRLTYKALQDEVNAFACSLLKLGLKKGDRLAIWSPNCVEWTITQFAAFKAGIILVNLNTAYKSHELEYVLNKVSCKGLIIASQFKTTDYQELLTKIAPELTSCTDKVLSSERLPHLKFVIKIDDQQHTGIYRFSDLLTTPTSEQLEQLKQLARQLQFDETINIQFTSGTTGNPKGTMLTHHNILNNGYFVGEGIRLTPQDKVCISVPLFHCFGMVMGNLACVTHGATMVYPSAVFNPLETLKAIHQERCTAAYGVPTMFIATLEHEQFNDFDLSSLRTGIMAGSPCPREIMQRVIDRMHMSEITICYGMTETSPVSVQSSVNDSIDKRVSTVGHVHPHVEIKIVDLEGQIVPQGTLGELCVRGYSVMAGYWGEEEKTREVIDAAGWMHTGDIAEMDQEGFIKIKGRIKDVVIRGGENLFPKEIEDFLYTHPDVSDVQVIGLPDAKYGEELCACIILHEHHQVDEDSIRQFCKEHISHNKVPRYVRFFNEFPMTASGKAQKIKLQEIMRAELNLTGNVFD
>NZ_CP009256.1|WP_032000867.1|1880156_1880636_-|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGNILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLKGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NZ_CP009256.1|WP_001145672.1|1880951_1882361_+|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLAKEIDKLEMKEIDFPSDINLIKAWCENDNKKNCQEFQAYLNRRQSGQDREYFKNVAQAFEFLIKVSPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPPEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKHGFALNNHGVSSSNIIKNLNTEDFVHRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTDHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSDHSSNFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSNDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NZ_CP009256.1|WP_085941183.1|1882415_1884560_+|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIEQGFYPEWELGVQIVEEEDEMNFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHVVPGIDFTDDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQAAYQPNSIDGNWPVETPPAASNGGFESYPEKISGHKLRQRSETFSDYFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLNYKKTAVEKSAKLSFLAFPPEDIQGRKVAVLIHNLVKSDALEAIKNWAIKEGVILHLLAPSLAPVKDHKDNVIVADGMQMSEPSIAYDAVIIPDGDNLNTVMQDGVARHYLLEAYKHLKPIVFLGNKSDLLEPLGLVADEGTLIEDEFQHVAEKFKNLIKAHRVWSREQIAAHVPA
>NZ_CP009256.1|WP_000432325.1|1884614_1885493_-|glucose-1-dehydrogenase
MENTTNQYPSEVPAQVQPHQPGDQEKMHPEPEIIKASHKGSEKLKGKVAVISGGDSGIGRSVAVLFAREGADIAVLYLEEDQDAEITKQLIEKEGQQCLLLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFAMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVEKFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NZ_CP009256.1|WP_000983534.1|1885634_1886048_-|hypothetical-protein
MMQPIHTHSTLQYIHISVPEILLSNIQIKNSWQDYNQEWSYRLDPPHASHPFQRDLHIIKSKNIETEDIKKLLDNTVVKNSKNKDDLKNIVEAETVIKEILDLSNYIPIENWLNDTGNRSIVESMIDKNKVKLLDII
>NZ_CP009256.1|WP_038405523.1|1886532_1887762_+|stress-induced-protein
MANTRYEDDNNSSGTSNRGFASMDPERVREIASKGGRAAHASGNAHEFTSEEAREAGRAAHASGNAHEFTSEEAREAGALSHKNDDRNGRGRSRYDDDDEDDDRGRSSGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRDDDDEDDDRGRSGGRGRGRSRDDDDEDDDRGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRSRYDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDDDDDRRGRSDGRGQNSRNQKRDAYGRFTS
>NZ_CP009256.1|WP_000795915.1|1887822_1888059_-|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NZ_CP009256.1|WP_001124839.1|1888341_1888953_+|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTDNQTDFTSKLKIQQVHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NZ_CP009256.1|WP_000885235.1|1889025_1889637_-|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGLLVANNPTALMILTVAGSAYLLWMGINLLLTPPTPNQSGSEKAQSWLRWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQILAFGVVHIISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NZ_CP009256.1|WP_000373859.1|1889793_1890249_+|Lrp/AsnC-family-transcriptional-regulator
MDRIDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIEIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIS

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Crispr_ID: NZ_CP009256_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009256_2

2502260-2502404

Orphan

Consensus_repeat	Method
CAAAGCTTTAGCCGCTTTGTCTTGCTCAGGTGGCGTTTTTTTATAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009256_2

>merge|NZ_CP009256|2|2502260-2502404|CRISPRCasFinder
CAAAGCTTTAGCCGCTTTGTCTTGCTCAGGTGGCGTTTTTTTATACCTGTAAAAAGTTCAATACAAATTAACCATAACTATGTTTATCTTGCGCTTCGCCAAAGCTTTAGCCGCTTTGTCTTGCTCAGGTGGCGTTTTTTTATAC

>NZ_CP009256|2|2|2502260-2502404|CRISPRCasFinder
CAAAGCTTTAGCCGCTTTGTCTTGCTCAGGTGGCGTTTTTTTATAC	CTGTAAAAAGTTCAATACAAATTAACCATAACTATGTTTATCTTGCGCTTCGC
CAAAGCTTTAGCCGCTTTGTCTTGCTCAGGTGGCGTTTTTTTATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009256.1\|WP_000949688.1\|2510271_2510517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_000616034.1\|2501941_2502175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_000270276.1\|2497031_2497133_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|369733
NZ_CP009256.1\|WP_085916945.1\|2497133_2497433_+\|cyd-operon-YbgE-family-protein	unknown	unknown	gnl\|CDD\|370577
NZ_CP009256.1\|WP_000954523.1\|2505997_2506900_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176162
NZ_CP009256.1\|WP_000102943.1\|2498939_2499536_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP009256.1\|WP_031999823.1\|2495872_2497018_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|129307
NZ_CP009256.1\|WP_000955082.1\|2500939_2501266_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_000838063.1\|2509592_2510012_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NZ_CP009256.1\|WP_002126108.1\|2497445_2497970_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009256.1\|WP_000175347.1\|2498042_2498714_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP009256.1\|WP_001187341.1\|2499725_2500832_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP009256.1\|WP_000156920.1\|2503124_2503556_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NZ_CP009256.1\|WP_000121846.1\|2505430_2505754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_001202776.1\|2506951_2507746_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP009256.1\|WP_077163451.1\|2502651_2502984_+\|DUF2750-domain-containing-protein	unknown	unknown	gnl\|CDD\|378546
NZ_CP009256.1\|WP_000138830.1\|2505042_2505384_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NZ_CP009256.1\|WP_000129945.1\|2503606_2504815_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NZ_CP009256.1\|WP_000185571.1\|2501366_2501726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_001186685.1\|2508098_2509400_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331

Protein	Function_ID	Function_description	E-value
NZ_CP009256.1\|WP_000270276.1\|2497031_2497133_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|369733	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein. This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in E. coli. Members have a consensus motif (MWYFXW) which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to Proteobacteria.	2.3152e-06
NZ_CP009256.1\|WP_085916945.1\|2497133_2497433_+\|cyd-operon-YbgE-family-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	3.65946e-19
NZ_CP009256.1\|WP_000954523.1\|2505997_2506900_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176162	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 4. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.44498e-97
NZ_CP009256.1\|WP_000102943.1\|2498939_2499536_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	1.21707e-108
NZ_CP009256.1\|WP_031999823.1\|2495872_2497018_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|129307	TIGR00203, ubiquinol_oxidase_subunit_2, cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport].	7.16428e-150
NZ_CP009256.1\|WP_001202776.1\|2506951_2507746_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	7.03372e-151
NZ_CP009256.1\|WP_000838063.1\|2509592_2510012_+\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	5.66012e-31
NZ_CP009256.1\|WP_002126108.1\|2497445_2497970_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.63041e-06
NZ_CP009256.1\|WP_000175347.1\|2498042_2498714_-\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	2.01647e-28
NZ_CP009256.1\|WP_001186685.1\|2508098_2509400_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	7.47656e-171
NZ_CP009256.1\|WP_000156920.1\|2503124_2503556_+\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.93176e-56
NZ_CP009256.1\|WP_077163451.1\|2502651_2502984_+\|DUF2750-domain-containing-protein	gnl\|CDD\|378546	pfam11042, DUF2750, Protein of unknown function (DUF2750). This family is conserved in Proteobacteria. The function is not known.	1.42209e-20
NZ_CP009256.1\|WP_000138830.1\|2505042_2505384_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	2.75898e-66
NZ_CP009256.1\|WP_000129945.1\|2503606_2504815_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NZ_CP009256.1\|WP_001187341.1\|2499725_2500832_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.74298e-179

>NZ_CP009256.1|WP_000616034.1|2501941_2502175_+|hypothetical-protein
MIQRISHHDLEHVYATAVNTIQSQMNFQDAVAQLEEVARAGHGKAALFLAELYYQGFRVERDSMKAQYWQKLATMQA
>NZ_CP009256.1|WP_000185571.1|2501366_2501726_-|hypothetical-protein
MTNTIDGFVFDNPPKEEQIIELAHYHRKLLDEAIFHQEIHLGDYCLAQRKRVFDYARQLDPNQKAWFYQVYDGELRKIADEDELHPADAEEGLSIFAMLLVLVIIAAILYFSVIRSLMG
>NZ_CP009256.1|WP_000955082.1|2500939_2501266_-|hypothetical-protein
MLTFKENFLKLKSELKADQCFNLVVIIIIGCIFMLSYLALLRPVNSEQYQRIVQLSRQATYPRTQDMAELIMAQSEIHRAEYLKLMHAYQFEHDHIKQYPALAQEDTQ
>NZ_CP009256.1|WP_001187341.1|2499725_2500832_-|signal-recognition-particle-docking-protein-FtsY
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETDK
>NZ_CP009256.1|WP_000102943.1|2498939_2499536_-|nitroreductase-family-protein
MSTFLDKIKNRRTIYAIGKNVALDRTKIEETIREAVKHSPSAFNSQSSRVVTLYGESHAKFWNLVREALRKIVPADAFAGTNAKIDSFVAGVGTVLFYEDQAVVKSLQEQFELYADNFPVWSEHSSAIAQFATWTALSELGLGASLQHYNPIVDADAAEAFDVPATWKLRAQLVFGSVEAPAGEKAFISDEDRFKTFN
>NZ_CP009256.1|WP_000175347.1|2498042_2498714_-|DUF2057-domain-containing-protein
MTLRLSVAAMGLLLSGSVFSAVTITAPEEIVILAVNGQEVNSGLFRSSKNNYKVDAGETSLSVRYQEYFEHLSGEHDIVKSGVVTIQTPALKDGQTYKLAMVDAPKQFEQAKKYAEQPTVALYNSNNELIVQQTGANNEARPWFASGLLGKVTDFTTKSSKQQPDAVYAAAKPTTTQANAPVATTMPATGVAQTNDQRLAEIWKKSSKAERQKFMAWLAEQSN
>NZ_CP009256.1|WP_002126108.1|2497445_2497970_-|GNAT-family-N-acetyltransferase
MIKLNFRLAEFSDIPTLVELINQSYREQQGRSWTTEVEYVKGQRINKEQLKHQLELPNSVLLIGEIDSSKVVTCIGLTFQSNTVEIGTFCTDPHVQNMKIGRSVLEYAEQFALHKVPELDSAIMYVLNVRSELIAYYERRGYIKTGYHEPYPLDANVGLPLIPIKLIEMKKDLK
>NZ_CP009256.1|WP_085916945.1|2497133_2497433_+|cyd-operon-YbgE-family-protein
MMATAMTASNQRKAQAFAMAISFLLALPLAVILLVHPSLMLDANGHYNHSQLMLVMVGISGGFIYGVGFVPHFWLWKWLFSPWIAWPLMLLGYYIWFLT
>NZ_CP009256.1|WP_000270276.1|2497031_2497133_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGILMACFAGVLSALYIEHHQNLDEE
>NZ_CP009256.1|WP_031999823.1|2495872_2497018_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYSVAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGSFFALLNPFALICGIVSLSMLCAHGGAWLMLRTDGDLKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNAALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLMIVGAILTAGFALFPFLLPSSVNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWSYYKMWGVITNKHIESNSHSLY
>NZ_CP009256.1|WP_077163451.1|2502651_2502984_+|DUF2750-domain-containing-protein
MIKIYILRTMMYCGVLWGLFDEGWAIKSDQEDFIFPFWLNGVQAHRYAKTHWPNYKPRKITPKDFHESLLPTLTRLKVTPALFNSSHRKLKLSTQQMHHFFFNHPKWQVA
>NZ_CP009256.1|WP_000156920.1|2503124_2503556_+|CBS-domain-containing-protein
MTIVAQVIKNKSEQAIFTISPEATVLEAITIMAEKGIGALVVAEGEQVVGILSERDYTRKVTLMERSSYSTTVAEIMTAKVITVGLNNTVEECLQLMTDRHLRHLPVLDNGKLVGFISIGDLVKAAMEDQKVLIEQLKQYISG
>NZ_CP009256.1|WP_000129945.1|2503606_2504815_-|aspartate-aminotransferase-family-protein
MTDITLAPVQPDQPTHLMATYGRQAISFVRGRGAYLYTQDGTEYLDALTGIAVCGLGHAHPAIAEAIAEQAATLVHTSNLFEIPWQTAAAQKLAEVSGMEEIFFSNSGAESNEGAIKIARKFGTQQGISLPKIIVAEQSFHGRTLATLSATGNKKVQDGFAPLVEDFIRVPFGDIEAIQEAALQHPDIVAILIEPIQGEGGINTAPQGFSYLEEVRQICNQHNWLMMLDEIQTGNGRTGKYFAYQHTNIIPDVLTTAKGLGNGFPVGAVMTQGKAVGLLGPGSHGSTYGGTVLGSRVVYTVIDTIQKENAVENAAVVGNYIVDQLRAQLSDKNVQVRGFGMMIGIQLPKDCAELVAIARDEYKLIINVTAGSVVRLLPPINMTQAQADILLERLVALITNYL
>NZ_CP009256.1|WP_000138830.1|2505042_2505384_+|Grx4-family-monothiol-glutaredoxin
MTEQARDTEALIRDQIAKHPVLLYMKGTPQFPQCGFSARAVEALSQIGRPFAYVNILENPDIRATLPKIANWPTFPQLWVNGELIGGSDIMLEMFQNGELKPLIEQYSAAPEA
>NZ_CP009256.1|WP_000121846.1|2505430_2505754_-|hypothetical-protein
MSYQLVELENATANIICPICKLAVIDWTQEQYVQPCEHTVFIAMDLGFEFVADRFEEVMNQNVDELHEDPNMNIFDAITTTPYKNLTILKADLGVDGLFRYVGISDC
>NZ_CP009256.1|WP_000954523.1|2505997_2506900_+|LysR-family-transcriptional-regulator
MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVTDIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYPEIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGNIKSPDELSDHRILSLSEEHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQNCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVEHLSEHP
>NZ_CP009256.1|WP_001202776.1|2506951_2507746_-|type-I-methionyl-aminopeptidase
MRASTVTIKTEQDLEKLRVSGRLAAQVLEMIGEYVKPGVTTEYLDNICNDYIVNTLKVIPANVGYHGFTKTICTSVNEVVCHGIPSQNKILKDGDIINIDVAIIKDGYFGDTSRMYYVGNVNPHAKKLVETTYEAMVAGIHAVKPGATLGDIGYAIQSVAHREGYSIVREYCGHGIGKVYHEQPNILHYGQRGQGLVLKKGMVFTIEPMVNAGKPQVKELNDGWTVITQDHSLSAQWEHMVAVTDTGFELLTPWPEGVGNYPEI
>NZ_CP009256.1|WP_001186685.1|2508098_2509400_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MQQLRTGDIIALGFMTFALFIGAGNIIFPPIVAQQAGDHVWLAAIGFLITAVGLPVITIMALSRMQGSIEIISSPLGRIASLILTVVCYLSVGPLFATPRTATVSYEIGFSSYFGTSSSSLLIYSAIYFAFVTVVSLYPNKLLDTVGHVLAPLKIIALAILGIAAVMIPAGYVPAPINHYVNSPVSEGFVNGYLTMDTLGALVFGIVIIQAIYSRGVTDNKLVTKYAIIASLISGVGLTLVYLSLFKLGLGSHEVAPNAANGAVILHAYVQHAFGNMGSLFLTGLIFLACMVTAIGLTCACAEYFAQLTKLPYKLLVFILVGFSFIISNLGLTKLIAVSVPVLSAIYPPAIVVIMLSFFWKFWHKPSFIVGSVTSIALIFGIIDGLKVAGFGDYLPNFLQHLPLNEQNLAWLIPSLVVLVVTTLIDKVKHKSI
>NZ_CP009256.1|WP_000838063.1|2509592_2510012_+|heme-binding-protein
MKSKYYLTLADAEFLMEEAQKYAIEHNFKVSIAIVDETSSLLLMKRLDGASPLTTHLCLEKAKCSSMSGRPSKFYEELLQNGRLGFLSMPSAKGMLEGGKAIIYEGQILGAIGVSGVQSFEDAEIAQHAIDVFLKKQSS
>NZ_CP009256.1|WP_000949688.1|2510271_2510517_+|hypothetical-protein
MLSLHFNKQVFINTLNSKDSVVYGVTTLALMLTLLFQGMIKGNLKPEYFMYAMVVSFVFCVWAFVDHKMRKLAKRRLSQQK

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Crispr_ID: NZ_CP009256_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009256_3

2730383-2730471

Orphan

Consensus_repeat	Method
TCTTGCGAAAAAGTAAGAGATAATCAATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009256_3

>merge|NZ_CP009256|3|2730383-2730471|CRISPRCasFinder
TCTTGCGAAAAAGTAAGAGATAATCAATCTCAACTATCTACTCACAACATGTTGTTCGTCTTGCGAAAAAGTAAGAGATAATCAATCTC

>NZ_CP009256|3|3|2730383-2730471|CRISPRCasFinder
TCTTGCGAAAAAGTAAGAGATAATCAATCTC	AACTATCTACTCACAACATGTTGTTCG
TCTTGCGAAAAAGTAAGAGATAATCAATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009256.1\|WP_000494374.1\|2722367_2723558_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183114
NZ_CP009256.1\|WP_002055839.1\|2734669_2735527_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP009256.1\|WP_032000610.1\|2725434_2726871_+\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NZ_CP009256.1\|WP_001269055.1\|2723701_2725213_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP009256.1\|WP_000462401.1\|2733619_2733838_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009256.1\|WP_031962564.1\|2733977_2734631_+\|oxygen-insensitive-NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182929
NZ_CP009256.1\|WP_038405655.1\|2721402_2722371_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP009256.1\|WP_038405656.1\|2737210_2739163_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP009256.1\|WP_000070779.1\|2736259_2737204_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP009256.1\|WP_001098470.1\|2729263_2729986_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|235919
NZ_CP009256.1\|WP_031945570.1\|2739155_2739629_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP009256.1\|WP_000009660.1\|2732367_2732877_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP009256.1\|WP_000122149.1\|2726887_2728273_+\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_CP009256.1\|WP_001983672.1\|2717689_2718055_-\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	unknown	unknown	gnl\|CDD\|238324
NZ_CP009256.1\|WP_111818374.1\|2739778_2740657_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP009256.1\|WP_001983665.1\|2735658_2736177_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP009256.1\|WP_031380064.1\|2732892_2733612_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP009256.1\|WP_032000611.1\|2728283_2729099_+\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|377583
NZ_CP009256.1\|WP_000808299.1\|2718092_2719805_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350795
NZ_CP009256.1\|WP_000874704.1\|2720035_2721208_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467

Protein	Function_ID	Function_description	E-value
NZ_CP009256.1\|WP_000494374.1\|2722367_2723558_-\|transcriptional-regulator	gnl\|CDD\|183114	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional.	6.78635e-10
NZ_CP009256.1\|WP_002055839.1\|2734669_2735527_-\|DMT-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	5.27413e-06
NZ_CP009256.1\|WP_032000610.1\|2725434_2726871_+\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	4.30815e-170
NZ_CP009256.1\|WP_001269055.1\|2723701_2725213_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP009256.1\|WP_031962564.1\|2733977_2734631_+\|oxygen-insensitive-NAD(P)H-nitroreductase	gnl\|CDD\|182929	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase.	5.66626e-145
NZ_CP009256.1\|WP_038405655.1\|2721402_2722371_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.37452e-33
NZ_CP009256.1\|WP_038405656.1\|2737210_2739163_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP009256.1\|WP_000070779.1\|2736259_2737204_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	7.71297e-140
NZ_CP009256.1\|WP_001098470.1\|2729263_2729986_+\|glutamine-amidotransferase	gnl\|CDD\|235919	PRK07053, PRK07053, glutamine amidotransferase; Provisional.	8.11186e-142
NZ_CP009256.1\|WP_031945570.1\|2739155_2739629_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	2.35768e-56
NZ_CP009256.1\|WP_000009660.1\|2732367_2732877_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.99356e-78
NZ_CP009256.1\|WP_000122149.1\|2726887_2728273_+\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_CP009256.1\|WP_001983672.1\|2717689_2718055_-\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	gnl\|CDD\|238324	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.	7.85994e-36
NZ_CP009256.1\|WP_111818374.1\|2739778_2740657_+\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	2.66724e-123
NZ_CP009256.1\|WP_001983665.1\|2735658_2736177_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	8.16909e-47
NZ_CP009256.1\|WP_031380064.1\|2732892_2733612_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.0989e-116
NZ_CP009256.1\|WP_032000611.1\|2728283_2729099_+\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|377583	pfam05985, EutC, Ethanolamine ammonia-lyase light chain (EutC). This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) EC:4.3.1.7 sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyzes the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia.	4.77242e-117
NZ_CP009256.1\|WP_000808299.1\|2718092_2719805_-\|AAA-family-ATPase	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.60601e-79
NZ_CP009256.1\|WP_000874704.1\|2720035_2721208_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0

>NZ_CP009256.1|WP_001098470.1|2729263_2729986_+|glutamine-amidotransferase
MNTTNAFPKTIYAIQHLAFEDLGSLEDVFYQLGFRVRYFEAGVDDLTPAFTHDGLTIILGGPIGVYETEDYPFLKDEIALLKQRLAADKPTLGICLGAQLIAHALGAKVYAGHQKEIGWGALSLSLRPNQVLSPLLNNVHVLHWHGDTFDLPENAVLLASSEIYTNQAFEVGNNILALQFHIETTEENFEKWLIGHTCELRHAGVSIPKLREQNIEYAPALEQAAFEIIQKFLKRIGYSA
>NZ_CP009256.1|WP_032000611.1|2728283_2729099_+|ethanolamine-ammonia-lyase-subunit-EutC
MKLNRDIQYPSSTHQDKWEKLKQFTDARIALGRAGCSIPTHALLEFQLSHAQAKDAVYQEMDVSYLSEQLAQQQLQSFNIQSNAPNKEIYLKRPDLGRQLSNPSKDTLIKKYAENPQQYDVCIVVGDGLSARAIEANAIAFIAALSEHIQQENWSLAPIVLATGSRVALGDEVAEIFKASMLVMLIGERPGLSSPDSMGIYYTWNAYSGCLDSKRNCISNVRSAGLSIPVAVQRLMALMRKSKQLGFSGVNLKDEHQLSNIDHNENAKLLF
>NZ_CP009256.1|WP_000122149.1|2726887_2728273_+|ethanolamine-ammonia-lyase-subunit-EutB
MSYRNIVANQQYHFADLKTLMAKATPLRSGDELAGVAARDATEHVAAQMTLADVPLKTFLNEVVIDYETDEITRLIIDEHDLAAFAPISHFTVGDFRNWLLGEDATAESLKALASGLTPEMVAAVSKIMRNQDLIYVASKCEVVTQFRNTIGLKGHLSTRLQPNHPTDDVLGISASILDGLMYGNGDAVIGINPATDNLHNLSELLKLLDHVIQEYQIPTQSCVLTHISSGIQLAEKNVPIDLMFQSIAGTQLANEGFGISLDLLQEGYEATLSLKRGTIGQNVMYFETGQGSALSSNAHHGVDQQTLETRAYAVARKYNPLLVNTVVGFIGPEYLFNGKQIIRAGLEDHFCGKLLGVPMGCDICYTNHADADQNDMDVLLTLFGAAGINFIMGIPGSDDVMLNYQTTSFHDALYLRQLLGLKPAPEFSAWLEQQGIFKQQNSQICWADHMPDQFSRLLMN
>NZ_CP009256.1|WP_032000610.1|2725434_2726871_+|ethanolamine-permease
MNQPETASVISSSAEVSSAEYFAQRQLKQGTVGWLLLIGLGVAYVISGDFAGWNFGIAQGGWGGMFIATALAALMYLCLCLSMSEMSTMMPTAGGGYSFARAAFGPFGGYLTGTAILIEYAIAPAAIAVFIGGYCESLFGINGWMIYLACYTIFMGIHLKGAGEALKIMFAITLVAAVALVVFIGAMIPHFNAQNLFDIPVSTGVGASLFLPHGYLGIWAAVPFAIWFFLAVEGVPLAAEEAKDPAKSLPRGLIGAMLILTAFAMLILFLGAGAAGASTLQNSGAPLVDALVKVYGTNTWLATFVNFVGLAGLIASFFSIIYAYSRQIFALSRAGYLPTSLSLTNKNKAPYLAIIIPGIIGFLLSLTKEGDSLILIAVFGATISYVLILLSHIKLRLSKPDMPRPYKTPGGIITSSIALVLAVAAVVAGFVVNPKVWFIAAGIYVVFIAYFLFYSRYHLVKGTPEEEFANIKAAEQEL
>NZ_CP009256.1|WP_001269055.1|2723701_2725213_+|aldehyde-dehydrogenase-family-protein
MRYIDPNQPGSKVQFKSQYENFIGGEWVAPLKGEYFDNVSPVDGKAFTRIPRSSAEDIELALDAAHKAKASWNKSSPTTRSNILLKIADRLEANLEMLAVAETWDNGKAVRETLAADLPLAIDHFRYFAGCIRAQEGGISEIDEDTIAYHFHEPLGVVGQIIPWNFPILMAAWKLAPALAAGNCVVIKPAEQTPVGILLVAELIQDILPPGVLNIVNGFGAEVGRPLATSPRIAKIAFTGSTQTGQMVMQYATENIIPVTLELGGKSPNLFFEDIMDKEDDFLEKTLEGFAMFALNQGEVCTCPSRALVQESIADQFLELAVERVKRIKTGHPLDTETMIGAQASLQQQEKILRCINTGREEGAELLLGGSGRKEVGDGFYVDPTIFKGHNSMQVFQEEIFGPVLAVTTFKDFDDAIKIANDTMYGLGAGVWSRSAHISYRAGRAIEAGRVWTNCYNIYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNLLVSYSTKPMGFF
>NZ_CP009256.1|WP_000494374.1|2722367_2723558_-|transcriptional-regulator
MFTKKDLLQQRMLIDQLRTQNSLSPQNAAKLGQSIASSWERSASAAIPKERFAAPLLERKSASQNALDLALSQCADDLRHIAEQSSMVIAVGDIGSTIIWTASSAQMQSAAERVHFVQGGQWREEFVGTNALALSLKTQQSSCVFSNEHYMESIHDWVCYAAPIIDPYSKQTLGVVDLSTTWKNHNTLGILAAERCASIIQSALLEQQRQHLHIRAFSTPQVKFNGKSLLLTPRQIEILTILALCPHGLTLEHLYQALYGERKVSMGTLKAEMSQLRDILGGLLGSRPYRLLVHVEADFLQAEQALDAGYVASALQLYTGVFLAKTESPFLCAWRDCLESRLSDAIFKTQETDLLLKHLAHFPEAIDAVERLMELLPSEHPAHQLLVKYIDSPKLS
>NZ_CP009256.1|WP_038405655.1|2721402_2722371_+|alpha/beta-hydrolase
MNTSTAKHNYAPDILGAGYEQLTLNFPDDYEGKVVATLVRKKATQPTQKAVLYIHGFLDYFFQTEMAEQFNSHGYDFYALDLRKYGRSKLPHQIFYNVLDLNEYDAEITQALEIIGQEKHTQVLLAGHSTGGLTATLYAAHHPDHPLIKALWANSPFYDFNLSLVEKKFGIPMLSRVGKYLPKVKFPSQLNKWYTTSLHKQLKGEWDFNLDWKPTSAPTVQLSFVHAIHTAQKEIHRGVKLNIPALIMHSHQTKNPRKWGPDATQSDVILDVKDIAKFGKKMKGDVSVVSIHNGLHDLVLSAQPVREQVYQQLFQWLDQKVT
>NZ_CP009256.1|WP_000874704.1|2720035_2721208_+|iron-containing-alcohol-dehydrogenase
MAFKNIADQTNGFYIPCVSLFGPGCAKEIGTKAQNLGAKKALIVTDEGLFKFGVADLIASYLTEAGVASHIFPGAEPNPTDINVHNGVNAYNENGCDFIVSLGGGSSHDCAKGIGLVTAGGGHIRDYEGIDKSKVPMTPLIAVNTTAGTASEMTRFCIITNTDTHVKMAIVDWRCTPLIAIDDPKLMIAKPAGLTAATGMDALTHAVEAYVSTAANPITDACAEKAITMISQWLQPAVANGENIEARDAMSYAQYLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAILLPHVCEFNLIACPDRYAKIAELMGVNTHGLTVTEAAYAAIDAIRKLSSSIGIPSGLTELGVKTEDLAVMAENAQKDACMLTNPRKANHAQVVEIFKAAL
>NZ_CP009256.1|WP_000808299.1|2718092_2719805_-|AAA-family-ATPase
MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYIHYLKARKVPVAITASTGIAATHMNGMTIHTWAGIGIKDHLTDDDLKRMKERKYLKEHLENAQVLVIDEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGRNGEANRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNAIRAQSIQTEHLQALHQSRTHDIGETFTRLYTHNMDVDNINYQHLNEIDNEGHQFNAVLDGNEKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEEDDENGLLPKVKLTDGTTLLVAPETWSIENEAGKVIASFQQIPLRLAWAITIHKSQGMTLEAAEINLMHTFEKGQGYVALSRLKSLTGLKLLGFNEQALELDSLAVKADRRFQELSTEAEDNFANVDLTAQHKAFIRHCGGTLNETEISRNEKKLARGEKQNYASATLDETRALFEEGYEIEDIAHERGLTPATIINHLARLHKEQKLDISVAHPGEEVVEEVRKIYKKLKKRQNPDHFSDDGSIKLRPIVEATSPRMGYDQVRLALLFIE
>NZ_CP009256.1|WP_001983672.1|2717689_2718055_-|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase
MAMPHVVVDYSDNLTGLNAKQLLEEINTTLIETELFSPEDIKSRARRDEVFLIGLGVDQAYIHVKAYILSGRTAEQKQLVGEQLLAALSNKKYLPQEFNKEIQLCVELIDMPRDDYFKQVV
>NZ_CP009256.1|WP_000009660.1|2732367_2732877_+|peptidyl-prolyl-cis-trans-isomerase
MSFPQVELNTNKGRIVLELNTEKAPKTAANFLEYVRDGFYDGVIFHRVIDGFMIQGGGFDENFKEKATRDAIENEADNGLSNDVGTIAMARTQAPHSASAQFFINVKNNSFLNHTSKTAQGWGYAVFGKVVEGMDVVEAIKGVRTGNRGYHADVPLENVVIESAKIISE
>NZ_CP009256.1|WP_031380064.1|2732892_2733612_+|UDP-2,3-diacylglucosamine-diphosphatase
MTYLFISDLHLSPEHPRLVRGFLDLLVHYQNKQTQLYILGDWFNAWIGDDYSAPWLDEIVEALKVFNQKGNRVYFQVGNRDFALNQVFLDKFNGVLLPDIYYLNIAGHQYRLEHGDALCTDDISYQRFKKIIRNPFLVAFLRRTPLSFRTKLVNGFRKRSHSDKQQKSYEIMDVNEQAVVSALTDVDILIHGHTHRPAIHQLQHKQRIVLGDWREDHAQILEIDPSSHLQQIKLTDWYY
>NZ_CP009256.1|WP_000462401.1|2733619_2733838_-|hypothetical-protein
MFELIPINRKSKLREIRIIKAFLIFAFVLCLLILYIEYQKYAHINWKFVFITCLCMIWGFDLNKQAKYLKNN
>NZ_CP009256.1|WP_031962564.1|2733977_2734631_+|oxygen-insensitive-NAD(P)H-nitroreductase
MDLLNTVKSRYTTKAYDPEKKIPQEKFNKLLEILRFTPSSVNIQPWHFLVADNPTAKERIAKALTGRYAYNAPKVLESSHTLVFCTRTDISPEYLNQLLEQDDLSGRFKDEKAKLGQKDTRHGYVEFYRNEQKNLFGWMENQTFIALGQLLFAAGLEGIDATPMGGFDENVLNEEFGLKERGLRSSVIVSLGYRSENDFNAKLPKSRLPDEVIFTHL
>NZ_CP009256.1|WP_002055839.1|2734669_2735527_-|DMT-family-transporter
MVLIFAAALCSVLVSVLLKNLKKKGYQPMQMIAWNYASASLLCYLWFKPDIQHISIQHTPWWLIVALGVILPSIFLCLAKSLEYAGIVKTEIAQRLSVVLSLLAAYFFFQEQFNSLKLLGIGLGIFAVLLILLGHFNESSGAQSKKAIFALMSVWFGYAAVDILLKYTSSLGLQFTLTLNLIFITAFVLSIIYLIFQKNSAWHFKNTFAGLMLGVLNFSNIALYVKAHILLKDSPAIVFASMNILVVLLGIVCGVVLYKEKLKLPTILGIILGISGLVSLALAMK
>NZ_CP009256.1|WP_001983665.1|2735658_2736177_-|RNA-chaperone-Hfq
MELKMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFDNDSKFEDGQDDENNR
>NZ_CP009256.1|WP_000070779.1|2736259_2737204_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSNQLPVINLMGPTASGKTALACELYERGNFELISVDSALVYKDMDIGTAKPTREEQELYPHHLIDIITPLEVYSAAQFVEDACALIDEMHSRGKTPILVGGTMLYFKALLEGLSSNLPSADANVRAAIEEKAANEGWQAVYDELVAVDPAAGVKFKVSDKQRIIRALEVYRITGQPITKLQAEQPKNVPYRYTFHNYALLPDRLELHQRIEQRLSKMWDIGFLSEVESLIEKYDLDENLPSMRSVGYRQALEFLLKSDMSLKKKQEMEDKALFATRQLAKRQYTWLRSLQEIHDFKTYLTIKQAKEDLRNSYG
>NZ_CP009256.1|WP_038405656.1|2737210_2739163_-|DNA-mismatch-repair-endonuclease-MutL
MTDEKLTQRRIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGHGIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGHQVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLALTHFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWLGHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDVNVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQEQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQSVHYAEQTPKYNGSAQLNNALKTYLAPLRDQPANFSVDENIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQVIVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSEMNALLRQMEQTEFASQCSHGRPTWRAFPLSQLDKLFARGE
>NZ_CP009256.1|WP_031945570.1|2739155_2739629_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSYSLKMVLNHEEDTQRLAQALAQHVQAGVIYLIGDLGAGKTTLTRYFLQALGHKGSVKSPTYTLVEPYKINNKEIFHFDLYRLNDPYELELMGIRDYLDIQDALFLFEWPSKGGDEIPEADIVIDIQKSNDELNRFVTLTLPTEHLYQTLQEQLHD
>NZ_CP009256.1|WP_111818374.1|2739778_2740657_+|pseudouridylate-synthase
MMDGVSASQVYLPPQTTAQTIYQFLCENFPHIKATEWQQRFQDGLIYAANGEKLTLNSSYIANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQTGNEFLTPIHRLDRETAGVVLFCKRPQSRGIYQQLFADRQVNKIYHAIAPYKAELKFPQSLKLYLDKGTPFYTMQVIAHTKTNTETKIELIEHNHSWAKYCLTPTTGKQHQLRVHLNHLGIPIKNDPFYPIVQHKADDDFSQPLQLLAKQISFIDPLTKQEMVFNSQLELTL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009256_2	2.1\|2502306\|53\|NZ_CP009256\|CRISPRCasFinder	2502306-2502358	53	NZ_CP009256.1	2502208-2502260	2	0.962

1. spacer 2.1|2502306|53|NZ_CP009256|CRISPRCasFinder matches to position: 2502208-2502260, mismatch: 2, identity: 0.962

ctgtaaaaagttcaatacaaattaaccataactatgtttatcttgcgcttcgc	CRISPR spacer
ctgtaaaaagttcaatacaaattaatcataattatgtttatcttgcgcttcgc	Protospacer
*************************.*****.*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2593833 : 2629646

Acinetobacter_phage(69.7%)

terminase,capsid,tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038405608.1\|2593833_2594469_+	SOS response-associated peptidase family protein	A0A218MNF5	uncultured_virus	1.1e-66	56.0
WP_038405609.1\|2594615_2595110_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	1.5e-44	60.3
WP_038405610.1\|2595113_2596412_+	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	9.0e-161	61.6
WP_085940648.1\|2596591_2597681_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_038405611.1\|2597678_2598464_+	hypothetical protein	A0A2H4JDZ2	uncultured_Caudovirales_phage	6.5e-05	22.0
WP_038405612.1\|2598588_2599134_-	glycoside hydrolase family 108 protein	A0A0P0IW03	Acinetobacter_phage	4.4e-93	94.4
WP_004714964.1\|2599176_2599566_-	hypothetical protein	J7I481	Acinetobacter_phage	7.3e-66	99.2
WP_000970244.1\|2599631_2600192_-	DUF4376 domain-containing protein	A0A172Q0F8	Acinetobacter_phage	1.3e-26	44.7
WP_038405613.1\|2600188_2604589_-	host specificity protein J	A0A0R6PIC9	Moraxella_phage	0.0e+00	64.3
WP_005110495.1\|2604641_2605307_-\|tail	tail assembly protein	A0A0R6PIW1	Moraxella_phage	1.8e-43	48.6
WP_038405614.1\|2605290_2606046_-	C40 family peptidase	A0A0R6PIM4	Moraxella_phage	4.9e-82	55.0
WP_038405615.1\|2606052_2606859_-\|tail	phage minor tail protein L	A0A0R6PGU8	Moraxella_phage	2.7e-94	64.6
WP_038405616.1\|2606845_2608006_-	hypothetical protein	U5PW98	Acinetobacter_phage	3.9e-38	59.4
WP_038405617.1\|2608059_2608404_-\|tail	phage tail protein	NA	NA	NA	NA
WP_038405618.1\|2608400_2608643_-	hypothetical protein	NA	NA	NA	NA
WP_038405619.1\|2608862_2609183_-	negative regulator GrlR	NA	NA	NA	NA
WP_038405620.1\|2609273_2613263_-	tape measure protein	A0A0D4DC37	Acinetobacter_phage	6.0e-187	43.3
WP_038405621.1\|2613321_2613723_-	hypothetical protein	NA	NA	NA	NA
WP_038405622.1\|2613734_2614268_-	hypothetical protein	NA	NA	NA	NA
WP_000523922.1\|2614301_2614625_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_014466185.1\|2614633_2614810_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	4.8e-09	59.6
WP_038405623.1\|2615060_2615642_-	hypothetical protein	NA	NA	NA	NA
WP_038405624.1\|2615749_2616541_-	hypothetical protein	NA	NA	NA	NA
WP_038405625.1\|2616905_2617430_-	hypothetical protein	A0A0N7IRG3	Acinetobacter_phage	5.8e-42	55.8
WP_038405626.1\|2617477_2618407_-	hypothetical protein	A0A1B1P9E0	Acinetobacter_phage	3.9e-166	96.1
WP_025464877.1\|2618512_2618725_-	hypothetical protein	A0A0P0I8C2	Acinetobacter_phage	4.2e-23	82.6
WP_001251841.1\|2618726_2619125_-	hypothetical protein	A0A0D4DBX3	Acinetobacter_phage	5.5e-61	80.3
WP_002011283.1\|2619126_2619495_-	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	1.5e-52	80.3
WP_038405627.1\|2619460_2619874_-	hypothetical protein	A0A0P0IKR8	Acinetobacter_phage	1.4e-62	86.6
WP_038405628.1\|2619882_2620251_-	hypothetical protein	J7I467	Acinetobacter_phage	2.1e-54	83.6
WP_000008466.1\|2620250_2620631_-	hypothetical protein	A0A0P0IVQ3	Acinetobacter_phage	5.3e-53	84.1
WP_038405629.1\|2620634_2620991_-	HeH/LEM domain protein	A0A0N7IRE4	Acinetobacter_phage	1.8e-42	83.1
WP_038405630.1\|2621034_2621985_-	hypothetical protein	A0A0P0HSG2	Acinetobacter_phage	2.4e-171	94.0
WP_038405631.1\|2621998_2622790_-	hypothetical protein	A0A0P0J090	Acinetobacter_phage	3.9e-90	78.9
WP_000589038.1\|2622877_2623192_-	hypothetical protein	A0A0S3UFT8	Pseudomonas_phage	5.2e-14	50.5
WP_001291453.1\|2623243_2623396_-	hypothetical protein	NA	NA	NA	NA
WP_000004552.1\|2623411_2623642_-	hypothetical protein	NA	NA	NA	NA
WP_038405632.1\|2623638_2624745_-\|capsid	minor capsid protein	A0A0P0IR98	Acinetobacter_phage	2.2e-187	88.3
WP_038405633.1\|2624754_2626095_-	DUF4055 domain-containing protein	A0A0P0IDW1	Acinetobacter_phage	1.0e-247	96.7
WP_038405634.1\|2626134_2627451_-\|terminase	terminase	A0A0N7IRE3	Acinetobacter_phage	6.2e-266	99.8
WP_038405635.1\|2627434_2627992_-	DUF2280 domain-containing protein	A0A0P0IKR0	Acinetobacter_phage	1.2e-82	99.5
WP_038405636.1\|2628051_2628693_-	hypothetical protein	A0A0P0I8J9	Acinetobacter_phage	5.9e-113	89.2
WP_038405637.1\|2628652_2629129_-	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	1.7e-64	77.9
WP_038405638.1\|2629190_2629646_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	1.9e-81	97.4

DBSCAN-SWA_2

2633451 : 2645025

Acinetobacter_phage(90.48%)

integrase

attL 2626848:2626862|attR 2650991:2651005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2626848:2626862	attL	NA	NA	NA	NA
WP_001277128.1\|2633451_2633928_-	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-25	40.3
WP_038405639.1\|2633924_2634326_-	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	2.6e-66	95.4
WP_038405640.1\|2634325_2634541_-	hypothetical protein	A0A0P0IY41	Acinetobacter_phage	3.6e-06	41.0
WP_000778988.1\|2634533_2634935_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	7.6e-26	48.4
WP_024432376.1\|2634934_2635237_-	hypothetical protein	NA	NA	NA	NA
WP_038405641.1\|2635233_2635368_-	putative phage replication protein	A0A0D4DCC7	Acinetobacter_phage	4.5e-07	87.5
WP_038405642.1\|2635364_2636135_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	7.5e-147	98.8
WP_032059778.1\|2636131_2637025_-	hypothetical protein	A0A0D4DBT2	Acinetobacter_phage	6.9e-160	100.0
WP_002053116.1\|2637083_2637440_-	hypothetical protein	J7I4N3	Acinetobacter_phage	2.0e-57	100.0
WP_001084141.1\|2637436_2637733_-	hypothetical protein	J7HXM0	Acinetobacter_phage	2.3e-48	99.0
WP_001095600.1\|2637729_2638005_-	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	8.3e-40	96.7
WP_000041061.1\|2638063_2638420_-	hypothetical protein	J7I452	Acinetobacter_phage	2.5e-57	97.5
WP_001077691.1\|2638428_2638629_-	helix-turn-helix transcriptional regulator	A0A0P0IKT3	Acinetobacter_phage	3.1e-20	68.2
WP_000212394.1\|2638741_2639398_+	helix-turn-helix domain-containing protein	A0A0P0IYD9	Acinetobacter_phage	3.1e-69	63.8
WP_000862387.1\|2639399_2639681_+	hypothetical protein	NA	NA	NA	NA
WP_038405643.1\|2639901_2640342_+	hypothetical protein	A0A0P0IR91	Acinetobacter_phage	2.8e-74	98.6
WP_038405644.1\|2640341_2640632_+	hypothetical protein	A0A0P0IDU2	Acinetobacter_phage	4.1e-45	88.5
WP_038405645.1\|2640624_2640951_+	hypothetical protein	A0A0P0IVW1	Acinetobacter_phage	3.2e-46	85.2
WP_038405646.1\|2640962_2642084_+	ATP-binding protein	A0A0N7IRE0	Acinetobacter_phage	6.5e-208	97.3
WP_038405819.1\|2642528_2642945_+	hypothetical protein	NA	NA	NA	NA
WP_032068705.1\|2642941_2643226_+	hypothetical protein	A0A0P0HSI5	Acinetobacter_phage	9.8e-44	95.7
WP_032068704.1\|2643229_2643487_+	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	1.1e-46	97.6
WP_000910238.1\|2643487_2643757_+	hypothetical protein	A0A0N7IRE8	Acinetobacter_phage	3.5e-43	100.0
WP_038405647.1\|2643762_2645025_-\|integrase	integrase family protein	A0A0P0IKP2	Acinetobacter_phage	3.0e-246	98.6
2650991:2651005	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2940642 : 2964402

Acinetobacter_phage(65.52%)

terminase,integrase

attL 2951704:2951717|attR 2966634:2966647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038405679.1\|2940642_2941899_-	hypothetical protein	U6C6F9	Ralstonia_phage	4.5e-141	61.2
WP_038405680.1\|2941913_2942801_-	hypothetical protein	U6C6Y4	Ralstonia_phage	1.9e-37	42.2
WP_038405681.1\|2942793_2944863_-	hypothetical protein	U6C855	Ralstonia_phage	2.2e-148	46.1
WP_038405682.1\|2944889_2946338_-	DNA packaging protein	Q2A0C1	Sodalis_phage	4.1e-178	61.2
WP_038405683.1\|2946315_2946777_-\|terminase	terminase small subunit	A0A0D4DCN4	Acinetobacter_phage	1.4e-60	89.6
WP_153886525.1\|2946785_2946935_-	hypothetical protein	NA	NA	NA	NA
WP_038405824.1\|2946937_2947420_-	hypothetical protein	A0A2H4JDI9	uncultured_Caudovirales_phage	1.1e-58	68.0
WP_038405684.1\|2947549_2947876_-	hypothetical protein	A0A0S4L5D5	Pseudomonas_phage	2.8e-34	71.3
WP_038405685.1\|2947993_2948221_-	hypothetical protein	NA	NA	NA	NA
WP_038405686.1\|2948220_2948499_-	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	8.7e-37	80.9
WP_169031035.1\|2948491_2948665_-	hypothetical protein	A0A0D4DBK3	Acinetobacter_phage	3.7e-22	92.7
WP_038405687.1\|2948869_2949172_-	hypothetical protein	NA	NA	NA	NA
WP_038405688.1\|2949294_2949477_-	hypothetical protein	NA	NA	NA	NA
WP_038405689.1\|2949481_2949922_-	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-24	40.6
WP_038405690.1\|2950092_2950494_-	hypothetical protein	A0A1B1P9J0	Acinetobacter_phage	1.2e-68	97.0
WP_038405691.1\|2950490_2950694_-	hypothetical protein	NA	NA	NA	NA
WP_162472609.1\|2950690_2951005_-	hypothetical protein	A0A1B1P9I5	Acinetobacter_phage	4.3e-16	70.3
WP_038405693.1\|2951018_2951231_-	hypothetical protein	NA	NA	NA	NA
WP_038405694.1\|2951223_2951619_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	1.7e-25	49.2
WP_038405695.1\|2951605_2951995_-	hypothetical protein	A0A0A0RTI7	Acinetobacter_phage	1.5e-31	59.1
2951704:2951717	attL	NA	NA	NA	NA
WP_171119367.1\|2951991_2952168_-	hypothetical protein	A0A1B1P9H7	Acinetobacter_phage	2.1e-20	89.7
WP_000644295.1\|2952164_2952416_-	hypothetical protein	A0A0P0IE39	Acinetobacter_phage	5.8e-40	98.8
WP_031960998.1\|2952412_2952640_-	hypothetical protein	A0A0P0IL13	Acinetobacter_phage	4.6e-36	98.7
WP_038405696.1\|2952857_2954183_-	AAA family ATPase	A0A0P0IVX0	Acinetobacter_phage	5.3e-233	92.1
WP_038405697.1\|2954182_2955076_-	GntR family transcriptional regulator	A0A068C8G6	Acinetobacter_phage	7.1e-48	48.6
WP_000047869.1\|2955072_2955240_-	hypothetical protein	NA	NA	NA	NA
WP_000049344.1\|2955325_2955700_-	helix-turn-helix domain-containing protein	A0A0N7IRF8	Acinetobacter_phage	2.3e-32	60.8
WP_038405698.1\|2955710_2955896_-	hypothetical protein	J7HXD2	Acinetobacter_phage	3.0e-25	91.8
WP_038405699.1\|2955973_2956738_+	helix-turn-helix domain-containing protein	J7I4M9	Acinetobacter_phage	4.5e-136	94.4
WP_000370477.1\|2956752_2956968_+	hypothetical protein	A0A0P0I8I5	Acinetobacter_phage	2.5e-31	100.0
WP_029423730.1\|2957019_2958276_+	hypothetical protein	NA	NA	NA	NA
WP_153310174.1\|2958279_2958444_+	hypothetical protein	NA	NA	NA	NA
WP_001076126.1\|2958640_2958832_+	hypothetical protein	A0A1B1P9G9	Acinetobacter_phage	1.1e-14	68.2
WP_001058895.1\|2958831_2959095_+	hypothetical protein	NA	NA	NA	NA
WP_038405700.1\|2959087_2959876_+	hypothetical protein	I2GUJ1	Acinetobacter_phage	4.1e-55	48.5
WP_038405701.1\|2959872_2960256_+	hypothetical protein	NA	NA	NA	NA
WP_158314139.1\|2960255_2960399_+	hypothetical protein	NA	NA	NA	NA
WP_049862827.1\|2960408_2961206_+	recombinase RecT	G9L6A2	Escherichia_phage	9.8e-57	59.8
WP_038405702.1\|2961192_2961831_+	hypothetical protein	A0A1X9SFE6	Acinetobacter_phage	2.2e-43	45.8
WP_144242546.1\|2961827_2962196_+	DUF551 domain-containing protein	I2GUB3	Acinetobacter_phage	1.0e-24	79.7
WP_038405703.1\|2962192_2962456_+	hypothetical protein	NA	NA	NA	NA
WP_038405704.1\|2963095_2963386_+	hypothetical protein	NA	NA	NA	NA
WP_038405705.1\|2963382_2964402_-\|integrase	site-specific integrase	A0A0R6PHH4	Moraxella_phage	1.2e-67	43.1
2966634:2966647	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3060107 : 3079105

Acinetobacter_phage(57.14%)

tail,integrase

attL 3055605:3055619|attR 3081079:3081093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3055605:3055619	attL	NA	NA	NA	NA
WP_000872622.1\|3060107_3061649_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.9e-288	100.0
WP_032000405.1\|3061645_3063448_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	0.0e+00	96.5
WP_000947611.1\|3063933_3065130_+\|integrase	tyrosine-type recombinase/integrase	A0A0D4DBR3	Acinetobacter_phage	2.5e-226	100.0
WP_000098296.1\|3065126_3065321_-	hypothetical protein	A0A0D4DBH0	Acinetobacter_phage	3.8e-31	100.0
WP_038405714.1\|3065754_3066297_-	N-acetylmuramidase	A0A0P0IW03	Acinetobacter_phage	1.1e-96	96.1
WP_001100986.1\|3066358_3066538_-	hypothetical protein	A0A0D4DCA7	Acinetobacter_phage	9.2e-24	100.0
WP_001021568.1\|3066563_3067106_-	hypothetical protein	A0A0D4DBW7	Acinetobacter_phage	5.7e-101	100.0
WP_000433923.1\|3067217_3067607_-	hypothetical protein	J7I481	Acinetobacter_phage	4.3e-66	99.2
WP_038405715.1\|3067671_3070161_-	hypothetical protein	A0A1I9L2F3	Xanthomonas_phage	1.5e-07	22.8
WP_038405716.1\|3070161_3070596_-	C40 family peptidase	A0A0B5A615	Paracoccus_phage	4.6e-08	33.3
WP_038405717.1\|3070650_3071304_-	metallophosphoesterase	K7PJZ5	Enterobacterial_phage	4.4e-39	42.0
WP_038405718.1\|3071300_3074363_-	CotH kinase family protein	H7BUR7	unidentified_phage	4.7e-06	33.8
WP_002126538.1\|3074425_3075283_-	DUF2163 domain-containing protein	A0A2D1GNT2	Pseudomonas_phage	1.2e-12	25.9
WP_038405719.1\|3075279_3076065_-	DUF2460 domain-containing protein	NA	NA	NA	NA
WP_038405720.1\|3076075_3079105_-\|tail	tail protein	A0A1Q1PW43	Pseudoalteromonas_phage	2.6e-41	45.8
3081079:3081093	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3082917 : 3122763

Acinetobacter_phage(79.55%)

terminase,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002126831.1\|3082917_3083898_-	DUF2184 domain-containing protein	H9C0E5	Vibrio_phage	1.1e-06	22.2
WP_038405726.1\|3083901_3084372_-	hypothetical protein	M4T3R5	Psychrobacter_phage	1.1e-18	43.1
WP_038405727.1\|3084390_3085587_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.0e-25	34.8
WP_038405728.1\|3085665_3086517_-	hypothetical protein	NA	NA	NA	NA
WP_038405729.1\|3086588_3087401_-\|capsid	minor capsid protein	M4T3R2	Psychrobacter_phage	1.4e-50	39.9
WP_038405730.1\|3087345_3088680_-	DUF1073 domain-containing protein	M4SN90	Psychrobacter_phage	2.4e-84	38.2
WP_038405731.1\|3088688_3090215_-\|terminase	phage terminase large subunit	E5AGA3	Erwinia_phage	6.2e-92	41.1
WP_017402944.1\|3090192_3090669_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	4.2e-31	45.8
WP_038405732.1\|3090727_3091369_-	hypothetical protein	A0A0D4DBV4	Acinetobacter_phage	3.8e-112	87.3
WP_123793457.1\|3091946_3093166_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	3.4e-77	52.2
WP_038405828.1\|3093213_3093633_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	1.6e-71	93.5
WP_000152665.1\|3094293_3094530_-	hypothetical protein	NA	NA	NA	NA
WP_001039312.1\|3094738_3095083_-	hypothetical protein	NA	NA	NA	NA
WP_001017700.1\|3095349_3095568_-	hypothetical protein	NA	NA	NA	NA
WP_038405734.1\|3095711_3096125_-	antitermination protein	NA	NA	NA	NA
WP_038405735.1\|3096127_3096535_-	DUF1064 domain-containing protein	A0A0R6PIZ9	Moraxella_phage	6.8e-22	50.9
WP_029749821.1\|3096531_3096750_-	hypothetical protein	A0A0P0IY41	Acinetobacter_phage	1.7e-19	90.7
WP_000778994.1\|3096845_3097253_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	3.8e-25	48.8
WP_002045268.1\|3097249_3097375_-	putative phage replication protein	A0A0D4DCC7	Acinetobacter_phage	2.1e-14	100.0
WP_000993074.1\|3097371_3098142_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	1.2e-147	99.6
WP_032059778.1\|3098138_3099032_-	hypothetical protein	A0A0D4DBT2	Acinetobacter_phage	6.9e-160	100.0
WP_038405736.1\|3099090_3099447_-	hypothetical protein	A0A0D4DBI9	Acinetobacter_phage	1.3e-56	98.3
WP_001084140.1\|3099443_3099740_-	hypothetical protein	A0A0P0HSJ2	Acinetobacter_phage	8.9e-48	98.0
WP_016803319.1\|3099736_3100009_-	hypothetical protein	A0A0D4DCC3	Acinetobacter_phage	9.7e-41	100.0
WP_000166124.1\|3100056_3100323_-	hypothetical protein	A0A0D4DBY7	Acinetobacter_phage	1.6e-43	100.0
WP_001068174.1\|3100359_3100590_-	hypothetical protein	A0A0D4DBS7	Acinetobacter_phage	6.1e-36	100.0
WP_000605245.1\|3100716_3101442_+	LexA family transcriptional regulator	A0A0D4DBI5	Acinetobacter_phage	1.8e-134	100.0
WP_000562174.1\|3101481_3101781_+	hypothetical protein	A0A0D4DCL0	Acinetobacter_phage	1.5e-47	100.0
WP_001037047.1\|3101820_3102111_+	hypothetical protein	A0A0D4DCB9	Acinetobacter_phage	7.9e-49	100.0
WP_001169164.1\|3102168_3102384_+	KTSC domain-containing protein	A0A0D4DBY2	Acinetobacter_phage	5.0e-32	100.0
WP_000276791.1\|3102434_3102725_+	hypothetical protein	A0A0D4DBS2	Acinetobacter_phage	1.5e-44	100.0
WP_001101025.1\|3103216_3103657_+	hypothetical protein	A0A0N7IRF7	Acinetobacter_phage	1.4e-73	95.9
WP_038405737.1\|3103659_3103983_+	hypothetical protein	A0A0P0IKP4	Acinetobacter_phage	6.3e-55	96.3
WP_004793763.1\|3103994_3105116_+	ATP-binding protein	A0A0D4DBX7	Acinetobacter_phage	1.3e-211	99.7
WP_038405738.1\|3105112_3106189_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	6.2e-139	74.0
WP_000654847.1\|3106190_3106436_+	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	1.5e-40	100.0
WP_038405739.1\|3106439_3106847_+	hypothetical protein	A0A0P0I8H3	Acinetobacter_phage	1.3e-12	97.0
WP_000004577.1\|3106843_3107239_+	hypothetical protein	NA	NA	NA	NA
WP_000877062.1\|3107235_3107571_+	hypothetical protein	A0A0P0HSE1	Acinetobacter_phage	3.7e-34	62.4
WP_000529848.1\|3107571_3107841_+	hypothetical protein	A0A0P0J067	Acinetobacter_phage	8.7e-42	100.0
WP_000566784.1\|3107964_3108540_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-110	100.0
WP_111818271.1\|3108636_3111402_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	98.3
WP_038405740.1\|3111415_3114148_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.0
WP_079283078.1\|3114504_3115554_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.3e-189	99.4
WP_000608305.1\|3115563_3116370_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.7e-146	99.3
WP_000066126.1\|3116379_3117075_+	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	5.8e-122	100.0
WP_038405741.1\|3117085_3118069_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	9.5e-187	98.2
WP_038405742.1\|3118075_3120451_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.4
WP_032000413.1\|3120452_3121952_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	1.0e-277	96.8
WP_001187844.1\|3122214_3122763_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009256

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection