CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	3 crisprs	csa3,RT	3	0
NZ_CP009144	Sinorhizobium meliloti strain RMO17 chromosome, complete genome	3 crisprs	WYL,cas3,csa3	0	6
NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1 crisprs	csa3,DEDDh	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009146_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009146_1

644294-644411

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009146_1

>merge|NZ_CP009146|1|644294-644411|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NZ_CP009146|1|1|644294-644411|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP009146.1\|WP_017266908.1\|637101_637695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_015008257.1\|638522_639110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379267
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP009146.1\|WP_040120989.1\|651027_651426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494

Protein	Function_ID	Function_description	E-value
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	8.61324e-172
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.88198e-148
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	1.57641e-07
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP009146.1|WP_010975834.1|640795_641713_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP009146.1|WP_017271875.1|639473_640715_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP009146.1|WP_015008257.1|638522_639110_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP009146.1|WP_044558301.1|637849_638320_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP009146.1|WP_017266908.1|637101_637695_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NZ_CP009146.1|WP_015241193.1|635508_636936_-|ISNCY-family-transposase
MSCLITMSQKELHRLELIQRIRGRSLSVVQAAELLGLSRSQVHRLLQAYDLAGADGLVSKKRGRPSNRRHSEDFRNLVLDLVREHYADFGPTLAAEKLLERHRIAVSKETLRQWMMEAGIWVSRRERKKRVFQPRGRRDCFGELVQIDGSLHWWFENRGPKCALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPIAFYSDKHGIFRTTHASKKDRTSGLTQFGRALYELNIDIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIAAANAYAPEFMADFNRRFGKAPRNPKDMHRPFAAHENLDGAMCRKEIRKLSNSLTLRYDKVMFILDPTDRAAALAGKKVVVCDYPDGRLEITDGEATLPYRTFDTLRSVHRSEVVENKRLDDMLALVAEMQAGREQQRSKGGPRRTGQTDHMFGIRDGSQSNGYQKRGTKPGRKTDFTKDPVVIAKRQQALAQLKAAE
>NZ_CP009146.1|WP_040120987.1|634223_635225_-|IS30-family-transposase
MSQCYLQLTLPDRRRLHQLLERKVPIAEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHAQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIPLDCRISQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVSQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
>NZ_CP009146.1|WP_010975839.1|631922_633704_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP009146.1|WP_014527132.1|629616_631842_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP009146.1|WP_010975841.1|628642_629620_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP009146.1|WP_014527138.1|649017_650169_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP009146.1|WP_014527139.1|650156_650939_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP009146.1|WP_040120989.1|651027_651426_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDILGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP009146.1|WP_015243022.1|651551_654890_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP009146.1|WP_014527141.1|655074_657117_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP009146.1|WP_014527142.1|657122_658286_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP009146.1|WP_014527143.1|658375_659398_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP009146.1|WP_040120990.1|660104_661562_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLALEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP009146.1|WP_014530373.1|661558_662833_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFHEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP009146.1|WP_014527145.1|662860_664057_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Crispr_ID: NZ_CP009146_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009146_2

644501-644600

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009146_2

>merge|NZ_CP009146|2|644501-644600|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NZ_CP009146|2|2|644501-644600|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP009146.1\|WP_017266908.1\|637101_637695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_015008257.1\|638522_639110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379267
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP009146.1\|WP_040120989.1\|651027_651426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494

Protein	Function_ID	Function_description	E-value
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	8.61324e-172
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.88198e-148
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	1.57641e-07
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP009146.1|WP_010975834.1|640795_641713_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP009146.1|WP_017271875.1|639473_640715_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP009146.1|WP_015008257.1|638522_639110_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP009146.1|WP_044558301.1|637849_638320_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP009146.1|WP_017266908.1|637101_637695_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NZ_CP009146.1|WP_015241193.1|635508_636936_-|ISNCY-family-transposase
MSCLITMSQKELHRLELIQRIRGRSLSVVQAAELLGLSRSQVHRLLQAYDLAGADGLVSKKRGRPSNRRHSEDFRNLVLDLVREHYADFGPTLAAEKLLERHRIAVSKETLRQWMMEAGIWVSRRERKKRVFQPRGRRDCFGELVQIDGSLHWWFENRGPKCALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPIAFYSDKHGIFRTTHASKKDRTSGLTQFGRALYELNIDIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIAAANAYAPEFMADFNRRFGKAPRNPKDMHRPFAAHENLDGAMCRKEIRKLSNSLTLRYDKVMFILDPTDRAAALAGKKVVVCDYPDGRLEITDGEATLPYRTFDTLRSVHRSEVVENKRLDDMLALVAEMQAGREQQRSKGGPRRTGQTDHMFGIRDGSQSNGYQKRGTKPGRKTDFTKDPVVIAKRQQALAQLKAAE
>NZ_CP009146.1|WP_040120987.1|634223_635225_-|IS30-family-transposase
MSQCYLQLTLPDRRRLHQLLERKVPIAEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHAQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIPLDCRISQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVSQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
>NZ_CP009146.1|WP_010975839.1|631922_633704_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP009146.1|WP_014527132.1|629616_631842_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP009146.1|WP_010975841.1|628642_629620_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP009146.1|WP_014527138.1|649017_650169_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP009146.1|WP_014527139.1|650156_650939_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP009146.1|WP_040120989.1|651027_651426_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDILGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP009146.1|WP_015243022.1|651551_654890_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP009146.1|WP_014527141.1|655074_657117_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP009146.1|WP_014527142.1|657122_658286_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP009146.1|WP_014527143.1|658375_659398_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP009146.1|WP_040120990.1|660104_661562_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLALEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP009146.1|WP_014530373.1|661558_662833_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFHEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP009146.1|WP_014527145.1|662860_664057_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Crispr_ID: NZ_CP009146_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009146_3

644675-644794

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009146_3

>merge|NZ_CP009146|3|644675-644794|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NZ_CP009146|3|3|644675-644794|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP009146.1\|WP_017266908.1\|637101_637695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_015008257.1\|638522_639110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379267
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP009146.1\|WP_040120989.1\|651027_651426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494

Protein	Function_ID	Function_description	E-value
NZ_CP009146.1\|WP_010975839.1\|631922_633704_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NZ_CP009146.1\|WP_014527138.1\|649017_650169_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NZ_CP009146.1\|WP_014527142.1\|657122_658286_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_014530373.1\|661558_662833_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	8.61324e-172
NZ_CP009146.1\|WP_014527141.1\|655074_657117_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009146.1\|WP_040120990.1\|660104_661562_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP009146.1\|WP_040120987.1\|634223_635225_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.88198e-148
NZ_CP009146.1\|WP_010975834.1\|640795_641713_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP009146.1\|WP_014527132.1\|629616_631842_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP009146.1\|WP_010975841.1\|628642_629620_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP009146.1\|WP_015241193.1\|635508_636936_-\|ISNCY-family-transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	1.57641e-07
NZ_CP009146.1\|WP_017271875.1\|639473_640715_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP009146.1\|WP_014527145.1\|662860_664057_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NZ_CP009146.1\|WP_044558301.1\|637849_638320_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.96877e-16
NZ_CP009146.1\|WP_014527139.1\|650156_650939_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP009146.1\|WP_015243022.1\|651551_654890_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP009146.1\|WP_014527143.1\|658375_659398_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP009146.1|WP_010975834.1|640795_641713_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP009146.1|WP_017271875.1|639473_640715_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP009146.1|WP_015008257.1|638522_639110_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP009146.1|WP_044558301.1|637849_638320_-|GNAT-family-N-acetyltransferase
MLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP009146.1|WP_017266908.1|637101_637695_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NZ_CP009146.1|WP_015241193.1|635508_636936_-|ISNCY-family-transposase
MSCLITMSQKELHRLELIQRIRGRSLSVVQAAELLGLSRSQVHRLLQAYDLAGADGLVSKKRGRPSNRRHSEDFRNLVLDLVREHYADFGPTLAAEKLLERHRIAVSKETLRQWMMEAGIWVSRRERKKRVFQPRGRRDCFGELVQIDGSLHWWFENRGPKCALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPIAFYSDKHGIFRTTHASKKDRTSGLTQFGRALYELNIDIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIAAANAYAPEFMADFNRRFGKAPRNPKDMHRPFAAHENLDGAMCRKEIRKLSNSLTLRYDKVMFILDPTDRAAALAGKKVVVCDYPDGRLEITDGEATLPYRTFDTLRSVHRSEVVENKRLDDMLALVAEMQAGREQQRSKGGPRRTGQTDHMFGIRDGSQSNGYQKRGTKPGRKTDFTKDPVVIAKRQQALAQLKAAE
>NZ_CP009146.1|WP_040120987.1|634223_635225_-|IS30-family-transposase
MSQCYLQLTLPDRRRLHQLLERKVPIAEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHAQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIPLDCRISQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVSQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
>NZ_CP009146.1|WP_010975839.1|631922_633704_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP009146.1|WP_014527132.1|629616_631842_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP009146.1|WP_010975841.1|628642_629620_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP009146.1|WP_014527138.1|649017_650169_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NZ_CP009146.1|WP_014527139.1|650156_650939_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP009146.1|WP_040120989.1|651027_651426_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDILGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP009146.1|WP_015243022.1|651551_654890_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP009146.1|WP_014527141.1|655074_657117_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP009146.1|WP_014527142.1|657122_658286_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP009146.1|WP_014527143.1|658375_659398_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP009146.1|WP_040120990.1|660104_661562_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLALEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP009146.1|WP_014530373.1|661558_662833_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFHEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NZ_CP009146.1|WP_014527145.1|662860_664057_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	0	1.0
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	1	0.978
NZ_CP009146_2	2.1\|644528\|45\|NZ_CP009146\|CRISPRCasFinder	644528-644572	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	1	0.978
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NZ_CP009146_1	1.1\|644321\|63\|NZ_CP009146\|CRISPRCasFinder	644321-644383	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NZ_CP009146_3	3.1\|644702\|66\|NZ_CP009146\|CRISPRCasFinder	644702-644767	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

11. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

12. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

13. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|644528|45|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|644321|63|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|644702|66|NZ_CP009146|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009144

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009144_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009144_1

173518-173664

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009144_1

>merge|NZ_CP009144|1|173518-173664|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NZ_CP009144|1|1|173518-173664|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009144.1\|WP_013844980.1\|182478_183498_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP009144.1\|WP_010968387.1\|169831_170641_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP009144.1\|WP_003531955.1\|182036_182417_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NZ_CP009144.1\|WP_038438884.1\|163305_164592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227298
NZ_CP009144.1\|WP_003537933.1\|168411_169575_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP009144.1\|WP_003531959.1\|176301_177435_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP009144.1\|WP_010968385.1\|166181_167192_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP009144.1\|WP_003531958.1\|177434_178517_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP009144.1\|WP_013844977.1\|164653_166123_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NZ_CP009144.1\|WP_010968388.1\|170771_172163_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NZ_CP009144.1\|WP_010968391.1\|174664_176293_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP009144.1\|WP_010968395.1\|185429_186248_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP009144.1\|WP_003537743.1\|172250_172595_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009144.1\|WP_010968392.1\|180848_181916_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NZ_CP009144.1\|WP_010968389.1\|172603_173458_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP009144.1\|WP_010968386.1\|167199_168183_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP009144.1\|WP_010968382.1\|162602_163283_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NZ_CP009144.1\|WP_010968394.1\|183606_185412_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009144.1\|WP_003531957.1\|178697_180557_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP009144.1\|WP_010968390.1\|173694_174654_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641

Protein	Function_ID	Function_description	E-value
NZ_CP009144.1\|WP_013844980.1\|182478_183498_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NZ_CP009144.1\|WP_010968387.1\|169831_170641_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NZ_CP009144.1\|WP_003531955.1\|182036_182417_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NZ_CP009144.1\|WP_038438884.1\|163305_164592_+\|hypothetical-protein	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.62731e-120
NZ_CP009144.1\|WP_003537933.1\|168411_169575_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NZ_CP009144.1\|WP_003531959.1\|176301_177435_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP009144.1\|WP_010968385.1\|166181_167192_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NZ_CP009144.1\|WP_003531958.1\|177434_178517_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP009144.1\|WP_013844977.1\|164653_166123_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NZ_CP009144.1\|WP_010968388.1\|170771_172163_+\|aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NZ_CP009144.1\|WP_010968391.1\|174664_176293_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP009144.1\|WP_010968395.1\|185429_186248_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NZ_CP009144.1\|WP_003537743.1\|172250_172595_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NZ_CP009144.1\|WP_010968392.1\|180848_181916_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NZ_CP009144.1\|WP_010968389.1\|172603_173458_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NZ_CP009144.1\|WP_010968386.1\|167199_168183_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NZ_CP009144.1\|WP_010968382.1\|162602_163283_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	1.36517e-112
NZ_CP009144.1\|WP_010968394.1\|183606_185412_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP009144.1\|WP_003531957.1\|178697_180557_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009144.1\|WP_010968390.1\|173694_174654_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138

>NZ_CP009144.1|WP_010968389.1|172603_173458_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NZ_CP009144.1|WP_003537743.1|172250_172595_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NZ_CP009144.1|WP_010968388.1|170771_172163_+|aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDEPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NZ_CP009144.1|WP_010968387.1|169831_170641_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NZ_CP009144.1|WP_003537933.1|168411_169575_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NZ_CP009144.1|WP_010968386.1|167199_168183_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NZ_CP009144.1|WP_010968385.1|166181_167192_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NZ_CP009144.1|WP_013844977.1|164653_166123_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MFGKRGNEGPGKGGARGFSPAPPMPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NZ_CP009144.1|WP_038438884.1|163305_164592_+|hypothetical-protein
MSAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NZ_CP009144.1|WP_010968382.1|162602_163283_+|pilus-assembly-protein-CpaD
MALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NZ_CP009144.1|WP_010968390.1|173694_174654_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NZ_CP009144.1|WP_010968391.1|174664_176293_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NZ_CP009144.1|WP_003531959.1|176301_177435_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NZ_CP009144.1|WP_003531958.1|177434_178517_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NZ_CP009144.1|WP_003531957.1|178697_180557_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NZ_CP009144.1|WP_010968392.1|180848_181916_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NZ_CP009144.1|WP_003531955.1|182036_182417_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NZ_CP009144.1|WP_013844980.1|182478_183498_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NZ_CP009144.1|WP_010968394.1|183606_185412_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NZ_CP009144.1|WP_010968395.1|185429_186248_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Crispr_ID: NZ_CP009144_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009144_2

1120883-1120993

Orphan

Consensus_repeat	Method
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009144_2

>merge|NZ_CP009144|2|1120883-1120993|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAACGGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

>NZ_CP009144|2|2|1120883-1120993|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAAC
GGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009144.1\|WP_010968993.1\|1105014_1107975_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP009144.1\|WP_010968998.1\|1117689_1118979_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP009144.1\|WP_003527322.1\|1128788_1129745_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP009144.1\|WP_010969005.1\|1127673_1128693_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP009144.1\|WP_013844141.1\|1101184_1102738_+\|Do-family-serine-endopeptidase	unknown	unknown	gnl\|CDD\|273938
NZ_CP009144.1\|WP_010968992.1\|1103582_1104980_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP009144.1\|WP_003527321.1\|1129773_1131276_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP009144.1\|WP_010969003.1\|1125251_1126178_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP009144.1\|WP_038438943.1\|1123597_1124611_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NZ_CP009144.1\|WP_003527320.1\|1131355_1131676_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NZ_CP009144.1\|WP_010968997.1\|1116756_1117617_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP009144.1\|WP_003527354.1\|1102884_1103586_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP009144.1\|WP_003527334.1\|1122620_1123508_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP009144.1\|WP_010969002.1\|1124711_1125113_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP009144.1\|WP_010968995.1\|1110666_1113321_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP009144.1\|WP_010969004.1\|1126193_1127681_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP009144.1\|WP_010969000.1\|1121401_1122400_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP009144.1\|WP_003527346.1\|1114694_1115984_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP009144.1\|WP_013844143.1\|1107985_1110313_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP009144.1\|WP_010968996.1\|1113746_1114685_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NZ_CP009144.1\|WP_010968993.1\|1105014_1107975_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP009144.1\|WP_010968998.1\|1117689_1118979_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP009144.1\|WP_003527322.1\|1128788_1129745_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NZ_CP009144.1\|WP_010969005.1\|1127673_1128693_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NZ_CP009144.1\|WP_013844141.1\|1101184_1102738_+\|Do-family-serine-endopeptidase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.11863e-158
NZ_CP009144.1\|WP_010968992.1\|1103582_1104980_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NZ_CP009144.1\|WP_003527321.1\|1129773_1131276_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP009144.1\|WP_010969003.1\|1125251_1126178_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NZ_CP009144.1\|WP_038438943.1\|1123597_1124611_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NZ_CP009144.1\|WP_003527320.1\|1131355_1131676_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NZ_CP009144.1\|WP_010968997.1\|1116756_1117617_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NZ_CP009144.1\|WP_003527354.1\|1102884_1103586_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.72214e-83
NZ_CP009144.1\|WP_003527334.1\|1122620_1123508_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NZ_CP009144.1\|WP_010969002.1\|1124711_1125113_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.33936e-42
NZ_CP009144.1\|WP_010968995.1\|1110666_1113321_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP009144.1\|WP_010969004.1\|1126193_1127681_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52
NZ_CP009144.1\|WP_010969000.1\|1121401_1122400_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NZ_CP009144.1\|WP_003527346.1\|1114694_1115984_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NZ_CP009144.1\|WP_013844143.1\|1107985_1110313_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74445e-54
NZ_CP009144.1\|WP_010968996.1\|1113746_1114685_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16

>NZ_CP009144.1|WP_010968998.1|1117689_1118979_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NZ_CP009144.1|WP_010968997.1|1116756_1117617_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NZ_CP009144.1|WP_003527346.1|1114694_1115984_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NZ_CP009144.1|WP_010968996.1|1113746_1114685_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NZ_CP009144.1|WP_010968995.1|1110666_1113321_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTATGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NZ_CP009144.1|WP_013844143.1|1107985_1110313_-|PAS-domain-containing-protein
MDKMADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NZ_CP009144.1|WP_010968993.1|1105014_1107975_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NZ_CP009144.1|WP_010968992.1|1103582_1104980_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NZ_CP009144.1|WP_003527354.1|1102884_1103586_+|response-regulator-transcription-factor
MVTRMKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGLSLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGAPEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMIKDDRTTDA
>NZ_CP009144.1|WP_013844141.1|1101184_1102738_+|Do-family-serine-endopeptidase
MSTIKAPRPSLKTVLKTTTVAGLAAVLLTTGLPAEVAQSFAEAVRVQAPAVPSFANVVDAVSPAVVSVRVQARERVSDDESNFTFDFGGRGFEDLPEDHPLRRFFREFAPRENDRADRWRDRRGPRGEGRLRPRAQGSGFFITEDGYLVTNNHVVSDGSAFTVIMNDGTELDAKLVGKDSRTDLAVLKVDDKRKFTYVSFADDEKVRVGDWVVAVGNPFGLGGTVTAGIISARGRDIGSGPYDDYLQVDAAVNRGNSGGPTFNLSGEVVGINTAIFSPSGGNVGIAFAIPASVAKDVVDSLIKDGTVSRGWLGVQIQPVTKDIAESLGLSEANGALVVEPQAGSPGEKAGIKNGDVVTALNGEPVKDPRDLARRVAALRPGSTAEVTLWRSGKSETVNLEIGTLPSDAKEPAPATGEAQPDEGQAGEEALADLGLTVTPSEDGKGVTIASVDPDSDAGDRGLKEGEKIVSVNNQEVKSADDVLKVINNAKKDGRSKALFQIEAQEGSRFVALPITQG
>NZ_CP009144.1|WP_010969000.1|1121401_1122400_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NZ_CP009144.1|WP_003527334.1|1122620_1123508_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NZ_CP009144.1|WP_038438943.1|1123597_1124611_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALRLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NZ_CP009144.1|WP_010969002.1|1124711_1125113_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKGA
>NZ_CP009144.1|WP_010969003.1|1125251_1126178_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NZ_CP009144.1|WP_010969004.1|1126193_1127681_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NZ_CP009144.1|WP_010969005.1|1127673_1128693_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NZ_CP009144.1|WP_003527322.1|1128788_1129745_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NZ_CP009144.1|WP_003527321.1|1129773_1131276_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NZ_CP009144.1|WP_003527320.1|1131355_1131676_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NZ_CP009144_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009144_3

2042522-2042634

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009144_3

>merge|NZ_CP009144|3|2042522-2042634|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NZ_CP009144|3|3|2042522-2042634|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009144.1\|WP_010969510.1\|2035371_2036565_-\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|227609
NZ_CP009144.1\|WP_010969509.1\|2034178_2035000_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NZ_CP009144.1\|WP_010969518.1\|2046245_2046641_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP009144.1\|WP_003535070.1\|2046776_2048150_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NZ_CP009144.1\|WP_010969512.1\|2037695_2038523_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NZ_CP009144.1\|WP_013844510.1\|2043446_2045180_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP009144.1\|WP_010969508.1\|2033197_2033881_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NZ_CP009144.1\|WP_003534093.1\|2040476_2042396_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP009144.1\|WP_003534106.1\|2031234_2031879_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NZ_CP009144.1\|WP_010969515.1\|2043022_2043445_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP009144.1\|WP_013844511.1\|2045285_2046224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009144.1\|WP_013844508.1\|2036662_2037685_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NZ_CP009144.1\|WP_010969520.1\|2051547_2052231_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP009144.1\|WP_003535074.1\|2049978_2050521_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NZ_CP009144.1\|WP_003535076.1\|2050632_2051328_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP009144.1\|WP_010969507.1\|2032046_2033174_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NZ_CP009144.1\|WP_010969513.1\|2038525_2040208_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP009144.1\|WP_003534108.1\|2030340_2031078_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP009144.1\|WP_010969521.1\|2052263_2054159_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NZ_CP009144.1\|WP_010969519.1\|2048382_2049774_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618

Protein	Function_ID	Function_description	E-value
NZ_CP009144.1\|WP_010969510.1\|2035371_2036565_-\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NZ_CP009144.1\|WP_010969509.1\|2034178_2035000_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NZ_CP009144.1\|WP_010969518.1\|2046245_2046641_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NZ_CP009144.1\|WP_003535070.1\|2046776_2048150_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP009144.1\|WP_010969512.1\|2037695_2038523_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NZ_CP009144.1\|WP_013844510.1\|2043446_2045180_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NZ_CP009144.1\|WP_010969508.1\|2033197_2033881_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NZ_CP009144.1\|WP_003534093.1\|2040476_2042396_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NZ_CP009144.1\|WP_003534106.1\|2031234_2031879_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NZ_CP009144.1\|WP_010969515.1\|2043022_2043445_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NZ_CP009144.1\|WP_013844508.1\|2036662_2037685_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NZ_CP009144.1\|WP_010969520.1\|2051547_2052231_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NZ_CP009144.1\|WP_003535074.1\|2049978_2050521_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NZ_CP009144.1\|WP_003535076.1\|2050632_2051328_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NZ_CP009144.1\|WP_010969507.1\|2032046_2033174_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.36883e-30
NZ_CP009144.1\|WP_010969513.1\|2038525_2040208_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP009144.1\|WP_003534108.1\|2030340_2031078_+\|transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NZ_CP009144.1\|WP_010969521.1\|2052263_2054159_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP009144.1\|WP_010969519.1\|2048382_2049774_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0

>NZ_CP009144.1|WP_003534093.1|2040476_2042396_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NZ_CP009144.1|WP_010969513.1|2038525_2040208_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NZ_CP009144.1|WP_010969512.1|2037695_2038523_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NZ_CP009144.1|WP_013844508.1|2036662_2037685_+|LacI-family-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NZ_CP009144.1|WP_010969510.1|2035371_2036565_-|phytanoyl-CoA-dioxygenase
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NZ_CP009144.1|WP_010969509.1|2034178_2035000_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NZ_CP009144.1|WP_010969508.1|2033197_2033881_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NZ_CP009144.1|WP_010969507.1|2032046_2033174_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NZ_CP009144.1|WP_003534106.1|2031234_2031879_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NZ_CP009144.1|WP_003534108.1|2030340_2031078_+|transcriptional-regulator
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NZ_CP009144.1|WP_010969515.1|2043022_2043445_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NZ_CP009144.1|WP_013844510.1|2043446_2045180_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NZ_CP009144.1|WP_013844511.1|2045285_2046224_+|hypothetical-protein
MPPAQEWGHAQQMQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NZ_CP009144.1|WP_010969518.1|2046245_2046641_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NZ_CP009144.1|WP_003535070.1|2046776_2048150_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NZ_CP009144.1|WP_010969519.1|2048382_2049774_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NZ_CP009144.1|WP_003535074.1|2049978_2050521_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NZ_CP009144.1|WP_003535076.1|2050632_2051328_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NZ_CP009144.1|WP_010969520.1|2051547_2052231_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NZ_CP009144.1|WP_010969521.1|2052263_2054159_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1636316 : 1647565

uncultured_Mediterranean_phage(80.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|1636316_1637351_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_014526708.1\|1637423_1638263_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-32	34.7
WP_010969279.1\|1638255_1638975_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_010969280.1\|1639039_1640149_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_003534564.1\|1640243_1640450_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969282.1\|1640523_1641171_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1641167_1642010_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_017277617.1\|1642146_1643430_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_010969283.1\|1643457_1644228_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_014526709.1\|1644224_1644878_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|1645049_1645703_+	biotin transport regulator	NA	NA	NA	NA
WP_010969286.1\|1646026_1647565_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_2

1711216 : 1773339

Sinorhizobium_phage(31.03%)

transposase,capsid,protease,tRNA,head,tail,integrase,portal

attL 1730593:1730610|attR 1744165:1744182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003529609.1\|1711216_1712347_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.8e-103	53.5
WP_010969324.1\|1713956_1714841_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013844449.1\|1714837_1715623_-	hypothetical protein	NA	NA	NA	NA
WP_010969325.1\|1715632_1716220_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_038438979.1\|1716353_1716938_-	hypothetical protein	NA	NA	NA	NA
WP_003529619.1\|1717099_1717240_-	hypothetical protein	NA	NA	NA	NA
WP_010969327.1\|1717429_1718011_-	L,D-transpeptidase	NA	NA	NA	NA
WP_010969328.1\|1718179_1718935_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	6.7e-07	26.6
WP_014526759.1\|1718931_1720098_-	MFS transporter	NA	NA	NA	NA
WP_010969330.1\|1720109_1720322_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_010969331.1\|1720457_1721966_+	adenylate cyclase	NA	NA	NA	NA
WP_013844456.1\|1721993_1722386_-	GFA family protein	NA	NA	NA	NA
WP_010969333.1\|1722623_1723346_+	hypothetical protein	NA	NA	NA	NA
WP_014526761.1\|1723684_1724137_+	hypothetical protein	NA	NA	NA	NA
WP_015241193.1\|1724847_1726275_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_010969335.1\|1726740_1727577_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003528321.1\|1727578_1728358_-	TatD family hydrolase	NA	NA	NA	NA
WP_010969336.1\|1728372_1729923_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	5.1e-102	38.6
WP_010969338.1\|1730553_1731585_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	7.3e-12	29.2
1730593:1730610	attL	NA	NA	NA	NA
WP_003528315.1\|1731581_1732286_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.2e-35	40.3
WP_010969340.1\|1732343_1733498_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.1e-43	32.5
WP_003528312.1\|1733554_1734595_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.6e-17	51.1
WP_003528311.1\|1735045_1735261_+	hypothetical protein	NA	NA	NA	NA
WP_003528309.1\|1735321_1735582_+	hypothetical protein	NA	NA	NA	NA
WP_038438980.1\|1736092_1737331_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	9.9e-149	63.3
WP_038438982.1\|1737961_1739143_+	hypothetical protein	NA	NA	NA	NA
WP_038439399.1\|1740111_1740381_-	HNH endonuclease	A0A1Y0SVI5	Sinorhizobium_phage	2.2e-05	50.0
WP_038438986.1\|1740465_1740798_-	hypothetical protein	NA	NA	NA	NA
WP_080726146.1\|1740914_1741151_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038438987.1\|1741241_1741595_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038438988.1\|1741591_1741891_+	hypothetical protein	NA	NA	NA	NA
WP_038438989.1\|1741883_1742144_+	hypothetical protein	A0A141GEZ4	Brucella_phage	1.9e-14	52.5
WP_038438990.1\|1742243_1742576_+	hypothetical protein	NA	NA	NA	NA
WP_038438991.1\|1742689_1743925_+	AAA family ATPase	NA	NA	NA	NA
WP_038438992.1\|1743921_1744587_+	hypothetical protein	NA	NA	NA	NA
1744165:1744182	attR	NA	NA	NA	NA
WP_080726147.1\|1744613_1744763_-	hypothetical protein	A0A068CDF3	Rhizobium_phage	4.4e-11	60.4
WP_127643569.1\|1745043_1745331_+	hypothetical protein	NA	NA	NA	NA
WP_038438994.1\|1745682_1745901_+	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	1.0e-16	68.0
WP_038438995.1\|1745897_1746086_+	hypothetical protein	NA	NA	NA	NA
WP_038438996.1\|1746948_1747608_+	hypothetical protein	NA	NA	NA	NA
WP_038438998.1\|1748126_1748417_-	hypothetical protein	NA	NA	NA	NA
WP_038438999.1\|1748810_1749734_-	glycoside hydrolase family protein	A0A1S5R1I9	Pseudomonas_phage	2.2e-07	36.2
WP_127643570.1\|1749927_1750821_+	hypothetical protein	NA	NA	NA	NA
WP_038439002.1\|1751653_1752403_-	hypothetical protein	A0A0F7L4V9	uncultured_marine_virus	5.6e-22	57.8
WP_038439004.1\|1754276_1756475_-	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	5.0e-228	57.3
WP_038439005.1\|1756471_1756894_-	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	8.3e-39	51.1
WP_038439006.1\|1756914_1757514_-	hypothetical protein	A0A076G707	Sinorhizobium_phage	5.8e-86	73.4
WP_038439007.1\|1757513_1758242_-	hypothetical protein	A0A076GD29	Sinorhizobium_phage	6.8e-65	52.0
WP_127664357.1\|1758245_1759031_-	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	9.6e-65	55.7
WP_051968689.1\|1758954_1761222_-	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	4.0e-55	33.7
WP_127643418.1\|1761276_1761768_+	YbjQ family protein	M4STD1	Rhodobacter_phage	5.1e-24	44.3
WP_080726150.1\|1761764_1761935_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_038439009.1\|1761967_1762339_-	hypothetical protein	NA	NA	NA	NA
WP_038439010.1\|1762342_1762774_-\|tail	phage tail protein	NA	NA	NA	NA
WP_038439011.1\|1762861_1763275_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_038439012.1\|1763274_1763754_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_038439013.1\|1763753_1764110_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_038439014.1\|1764272_1764680_-	hypothetical protein	NA	NA	NA	NA
WP_051968690.1\|1764696_1765269_-	hypothetical protein	NA	NA	NA	NA
WP_038439015.1\|1765475_1766717_-\|capsid	phage major capsid protein	A0A0F7L2V9	uncultured_marine_virus	1.4e-86	52.2
WP_038439016.1\|1766790_1767405_-\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	3.6e-43	56.0
WP_038439017.1\|1767401_1768664_-\|portal	phage portal protein	A0A0F7L418	uncultured_marine_virus	3.2e-102	49.6
WP_080726152.1\|1768663_1769596_-	hypothetical protein	A0A141GEV8	Brucella_phage	4.8e-71	53.9
WP_012477343.1\|1769630_1770368_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_080599811.1\|1770380_1771910_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.0e-118	43.7
WP_051968692.1\|1772036_1772987_-	hypothetical protein	A0A141GEV8	Brucella_phage	1.2e-77	52.8
WP_127643420.1\|1772991_1773339_-	hypothetical protein	H2BDA5	Pseudomonas_virus	5.6e-09	39.8

DBSCAN-SWA_3

2238288 : 2264582

Sinorhizobium_phage(59.09%)

terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038439094.1\|2238288_2238654_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	5.3e-42	73.3
WP_038439097.1\|2238708_2238951_-	hypothetical protein	J7F8X5	Agrobacterium_phage	1.5e-16	60.3
WP_038439099.1\|2239071_2240040_-	chitinase	A0A076G6J8	Sinorhizobium_phage	5.9e-165	87.7
WP_051968696.1\|2240231_2240417_+	hypothetical protein	NA	NA	NA	NA
WP_038439104.1\|2241091_2243116_-\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	2.2e-52	30.5
WP_038439105.1\|2243127_2244648_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	3.2e-242	80.0
WP_038439106.1\|2244647_2247401_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	2.0e-258	61.7
WP_038439108.1\|2247407_2247812_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	8.4e-49	72.4
WP_038439109.1\|2247837_2248428_-	hypothetical protein	A0A291AUM8	Sinorhizobium_phage	9.7e-70	66.0
WP_038439111.1\|2248424_2249078_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	1.5e-55	55.0
WP_038439113.1\|2249070_2251176_-	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	6.9e-17	63.2
WP_038439115.1\|2251236_2251632_+	hypothetical protein	NA	NA	NA	NA
WP_038439116.1\|2251768_2252443_+	hypothetical protein	NA	NA	NA	NA
WP_080726161.1\|2252439_2252673_-	hypothetical protein	NA	NA	NA	NA
WP_017272432.1\|2252768_2253170_-	hypothetical protein	NA	NA	NA	NA
WP_017272431.1\|2253184_2253670_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	9.3e-10	30.7
WP_017272430.1\|2253671_2254097_-	hypothetical protein	NA	NA	NA	NA
WP_017265443.1\|2254303_2254750_-	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	7.2e-17	37.8
WP_038439118.1\|2254730_2255786_-\|head	head morphogenesis protein SPP1	A0A076G6I6	Sinorhizobium_phage	3.0e-77	49.7
WP_038439119.1\|2255864_2256374_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	4.7e-20	36.8
WP_015007747.1\|2256672_2257038_-	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	1.3e-45	75.0
WP_038439120.1\|2257300_2257795_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	4.2e-18	42.8
WP_038439123.1\|2257846_2258188_-	hypothetical protein	NA	NA	NA	NA
WP_017276962.1\|2258201_2259170_-	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	2.0e-141	76.6
WP_028004600.1\|2259195_2259666_-	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	2.7e-38	61.9
WP_038439126.1\|2259678_2260824_-	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	4.2e-77	46.6
WP_038439128.1\|2260862_2261348_+	hypothetical protein	NA	NA	NA	NA
WP_038439131.1\|2261361_2262738_-	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	4.8e-128	50.9
WP_038439132.1\|2262746_2264078_-	DNA-packaging protein	Q1WDG8	Streptomyces_phage	5.8e-38	32.8
WP_038439134.1\|2264081_2264582_-\|terminase	terminase small subunit	A0A076GD11	Sinorhizobium_phage	7.0e-29	44.4

DBSCAN-SWA_4

2269767 : 2282227

Sinorhizobium_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038439144.1\|2269767_2270163_-	hypothetical protein	M9Q2G6	Clostridium_phage	8.3e-09	41.9
WP_038439145.1\|2270498_2270714_-	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	6.5e-08	71.8
WP_038439147.1\|2270952_2272125_-	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	1.9e-69	41.6
WP_017271892.1\|2272121_2272307_-	hypothetical protein	NA	NA	NA	NA
WP_038439148.1\|2272303_2274313_-	hypothetical protein	A0A291AUL2	Sinorhizobium_phage	5.2e-224	58.5
WP_026031290.1\|2274339_2274714_-	hypothetical protein	NA	NA	NA	NA
WP_038439149.1\|2275338_2276070_-	DUF2312 domain-containing protein	A0A0F6R615	Sinorhizobium_phage	1.3e-31	85.2
WP_015007371.1\|2276070_2276358_-	hypothetical protein	A0A172Q0P4	Acinetobacter_phage	6.4e-19	59.2
WP_038439151.1\|2276444_2276693_+	hypothetical protein	NA	NA	NA	NA
WP_038439153.1\|2276695_2276893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038439154.1\|2276987_2277746_+	helix-turn-helix domain-containing protein	A0A291AUK0	Sinorhizobium_phage	1.0e-71	59.3
WP_038439155.1\|2277745_2278174_+	hypothetical protein	NA	NA	NA	NA
WP_038439157.1\|2279054_2279369_+	hypothetical protein	A0A076GCZ5	Sinorhizobium_phage	9.9e-21	49.0
WP_038439158.1\|2279365_2279695_+	hypothetical protein	NA	NA	NA	NA
WP_038439159.1\|2279963_2280200_+	hypothetical protein	A0A076G7C7	Sinorhizobium_phage	1.5e-18	57.7
WP_127535441.1\|2280199_2280730_+	hypothetical protein	NA	NA	NA	NA
WP_038439160.1\|2280732_2281704_+	phage recombination protein Bet	NA	NA	NA	NA
WP_003528100.1\|2281705_2282227_+	hypothetical protein	B0VK83	Azospirillum_phage	7.1e-32	44.8

DBSCAN-SWA_5

2588066 : 2597701

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2588066_2590121_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_010969852.1\|2590553_2591588_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2591611_2592799_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2593058_2594969_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2595014_2597018_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2597251_2597701_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_6

2613501 : 2679025

Streptococcus_phage(11.11%)

protease,tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026030172.1\|2613501_2613843_-\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_010969866.1\|2613950_2614769_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	3.4e-28	35.6
WP_003532890.1\|2614770_2615271_-	hypothetical protein	NA	NA	NA	NA
WP_010969867.1\|2615748_2616036_-	accessory factor UbiK family protein	NA	NA	NA	NA
WP_038439210.1\|2616321_2617164_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_013844743.1\|2617175_2618279_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010969870.1\|2618441_2619236_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_003532879.1\|2619237_2620389_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_003532877.1\|2620536_2621415_+	hypothetical protein	NA	NA	NA	NA
WP_003532875.1\|2621699_2622632_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.8e-47	37.5
WP_003532873.1\|2622672_2623503_-	oxaloacetate decarboxylase	NA	NA	NA	NA
WP_003532871.1\|2623576_2623954_-	DUF779 domain-containing protein	NA	NA	NA	NA
WP_010969871.1\|2624089_2625598_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_010969872.1\|2625861_2626818_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013844744.1\|2627142_2628324_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_003532863.1\|2628491_2629106_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_010969874.1\|2629467_2630187_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2630242_2630548_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2630778_2631882_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003534506.1\|2632354_2632810_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2632806_2633277_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2633322_2633865_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2634039_2634225_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|2634243_2635503_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|2635499_2636132_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2636128_2636752_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_010969882.1\|2637110_2638124_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2638127_2639048_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2639044_2641858_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2641868_2643938_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2643952_2644504_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2644761_2645754_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2645919_2646126_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969889.1\|2646188_2647097_+	cell filamentation protein	NA	NA	NA	NA
WP_010969890.1\|2647221_2647713_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2647795_2648698_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2648891_2649407_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2649410_2650238_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|2650360_2650789_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2650785_2651037_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2651174_2652884_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534438.1\|2653355_2653943_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_017263274.1\|2655981_2656905_-	phosphotransferase	Q75ZG1	Hepacivirus	8.8e-17	30.2
WP_010969898.1\|2656924_2657389_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_162473556.1\|2657385_2658312_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_038439215.1\|2658474_2660664_-	anthranilate synthase	NA	NA	NA	NA
WP_010969901.1\|2660937_2663169_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_017263275.1\|2663379_2664279_+	extensin family protein	NA	NA	NA	NA
WP_010969903.1\|2664439_2666119_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2666209_2667433_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2667436_2668726_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2668909_2670073_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2670250_2670655_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2670767_2672684_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2672687_2673836_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2673897_2674986_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|2675146_2675734_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_010969911.1\|2676020_2676977_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2677133_2677979_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2677975_2679025_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009145_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009145_1

1180639-1180748

Orphan

Consensus_repeat	Method
GCCGCGCGGCGGGACCGCCGCGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009145_1

>merge|NZ_CP009145|1|1180639-1180748|CRISPRCasFinder
GCCGCGCGGCGGGACCGCCGCGATGACCTGATGGAACTGATCGGCGACCGCGGCGACCGGCGCGAGCGGCTCATGGACCTGATCGCCGCGCGGCGGGACCGCCGGGATGA

>NZ_CP009145|1|1|1180639-1180748|CRISPRCasFinder
GCCGCGCGGCGGGACCGCCGCGATGA	CCTGATGGAACTGATCGGCGACCGCGGCGACCGGCGCGAGCGGCTCATGGACCTGATC
GCCGCGCGGCGGGACCGCCGGGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009145.1\|WP_040120815.1\|1178022_1179783_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|227903
NZ_CP009145.1\|WP_014528402.1\|1190399_1191035_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NZ_CP009145.1\|WP_014528421.1\|1161778_1162414_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236494
NZ_CP009145.1\|WP_017267560.1\|1172903_1174988_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|306677
NZ_CP009145.1\|WP_080726228.1\|1185618_1185960_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP009145.1\|WP_074853769.1\|1181518_1181668_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288799
NZ_CP009145.1\|WP_127535401.1\|1163441_1164089_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|131216
NZ_CP009145.1\|WP_040120812.1\|1165147_1165534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223052
NZ_CP009145.1\|WP_040120811.1\|1162469_1162949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009145.1\|WP_014528409.1\|1182146_1183136_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176233
NZ_CP009145.1\|WP_014528407.1\|1184150_1185341_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_CP009145.1\|WP_014528410.1\|1181130_1181478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009145.1\|WP_014528408.1\|1183384_1184101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009145.1\|WP_017267559.1\|1175249_1175606_-\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP009145.1\|WP_014528417.1\|1167248_1167701_-\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NZ_CP009145.1\|WP_040120817.1\|1191038_1191419_+\|response-regulator	unknown	unknown	gnl\|CDD\|381092
NZ_CP009145.1\|WP_014528404.1\|1187018_1187843_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP009145.1\|WP_017272053.1\|1169844_1170198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009145.1\|WP_026029634.1\|1169246_1169432_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP009145.1\|WP_017268105.1\|1185989_1186907_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840

Protein	Function_ID	Function_description	E-value
NZ_CP009145.1\|WP_040120815.1\|1178022_1179783_+\|integral-membrane-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	3.78915e-31
NZ_CP009145.1\|WP_014528402.1\|1190399_1191035_+\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.33135e-85
NZ_CP009145.1\|WP_014528421.1\|1161778_1162414_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236494	PRK09391, fixK, transcriptional regulator FixK; Provisional.	5.22476e-108
NZ_CP009145.1\|WP_080726228.1\|1185618_1185960_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.35261e-15
NZ_CP009145.1\|WP_074853769.1\|1181518_1181668_-\|hypothetical-protein	gnl\|CDD\|288799	pfam11972, HTH_13, HTH DNA binding domain. This is a helix-turn-helix DNA binding domain.	0.00072557
NZ_CP009145.1\|WP_127535401.1\|1163441_1164089_-\|cytochrome-C	gnl\|CDD\|131216	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.	2.71791e-118
NZ_CP009145.1\|WP_040120812.1\|1165147_1165534_+\|hypothetical-protein	gnl\|CDD\|223052	PHA03346, PHA03346, US22 family homolog; Provisional.	0.00930866
NZ_CP009145.1\|WP_017267560.1\|1172903_1174988_+\|HAMP-domain-containing-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	5.79868e-72
NZ_CP009145.1\|WP_014528409.1\|1182146_1183136_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.59654e-173
NZ_CP009145.1\|WP_014528407.1\|1184150_1185341_+\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	1.57309e-128
NZ_CP009145.1\|WP_017267559.1\|1175249_1175606_-\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	1.70794e-08
NZ_CP009145.1\|WP_014528417.1\|1167248_1167701_-\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	1.39673e-15
NZ_CP009145.1\|WP_040120817.1\|1191038_1191419_+\|response-regulator	gnl\|CDD\|381092	cd17537, REC_FixJ, phosphoacceptor receiver (REC) domain of FixJ family response regulators. FixJ family response regulators contain an N-terminal receiver domain (REC) and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. The Sinorhizobium meliloti two-component system FixL/FixJ regulates nitrogen fixation in response to oxygen during symbiosis. Under microaerobic conditions, the kinase FixL phosphorylates the response regulator FixJ resulting in the regulation of nitrogen fixation genes such as nifA and fixK. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.41604e-26
NZ_CP009145.1\|WP_014528404.1\|1187018_1187843_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.42603e-43
NZ_CP009145.1\|WP_026029634.1\|1169246_1169432_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.08833e-05
NZ_CP009145.1\|WP_017268105.1\|1185989_1186907_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.27708e-50

>NZ_CP009145.1|WP_040120815.1|1178022_1179783_+|integral-membrane-protein
MVHADQQGVPVDPATALPTEAEVLAQLDRIRFSTEFDAPERARQFLAYVVGETIAGRADRIKAYSIATEVFGRDSSFDAQTDPAVRIEAARIRRALERYYLVEGHNDPLVINMPKGAYVPTFERRIKVHTEPDPGLFVSVRRNSPFGSSRQPWAWVAIAALAFALGSLAANALLRSITPAESEDMAGFRPNIPKLAVMPFEDLTGTPHSAMITRGFTDEVVDKIARFKEIIVVSREKLDGSPDQADAPAYALEGRVRLDGEKLRLAIRLVQRSDGSVVWANNYDESLATHKIIALQEKAAAAVATAVAQPYGVVFQANAVRFTRSVPDDWEAYACTLAYYGYRSNLSPLTHSSVQECLQQATRQFPNYATAWALLSMTYIDELRFQYRLERSSPISLEHAVAAAARAVELDSQDVRALQAEMLTLFFRGEVDAALAVGARAFAINPNDTELAGEYGFRRALSGQWRSGCELVSQTVERNPGPVGYFEAALAICSYIESDYVAAERWARLADLRANPIYRVILLAILGKLGKEEQAKEEQNWLETNVPGFLENIRKEIALRIRRPEDQQHFIEGLREAGVTIPEDGA
>NZ_CP009145.1|WP_017267559.1|1175249_1175606_-|BA14K-family-protein
MSPARAQTCIGICNGGTGGSTNHNLFIEREYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGFRPGVRQQFRLRQRRVIDANKHLRWCQERYLSYRLADDTFQPFEGARRPCNSPYN
>NZ_CP009145.1|WP_017267560.1|1172903_1174988_+|HAMP-domain-containing-protein
MAVKLFTILVLLGAIAVLVTGVLGYFRARDALEKAVFDQLTAARQTKTRQVEDYFRTIDAELRLLASSKMAVDATREFRIVVDQLDRAGAPPELRQKVGTWYTENFIPGITRVLGRKPVLADYLPVGAAPYYLQYHYIVANPHPAERRKLLDDAGDGSEYSRLHAMYHPMMRAAAATLGFFDFMIADPKSGRLIYTVEKEVDFTTSLQAGPYRHSNAAAAAARCAASPDRSAVCLEDFAPYAPSGGAPIAFMGAPVIDRGVVIGVLIAQLSNEEIDNVVTGGRRWRQEGFGDTGEAYLVGPDYLVRSGPRAFYENRENYFAELKSVGAPGEEIAAIERYGTPVQHQRINTKATQAALAGVEGTGEIVGYRGVPTLASWGPLAIPGIKWGLVAKIDSAEAFAPIERLRQDLLVVGGLALLVVAATGAWLSRALLGPLRELTAGVRRFAAGDYRASVPVRTHDEIGQLCSAFNGMVEDLHQKNVVIENKNRENEQLLLNVLPAPIANRLRGGEEAIADGFAEVTVAFADLVGFTELTSEMPPHDVVTLLNELFTRFDAAAHDLGIEKIKTVGDAYMAVCGLPEPVANHAERMVRMAIRMVHITREHGMEHNASMKLRVGINTGPVVAGVIGTSKYIYDLWGDTVNLASRMESGGIPDSIQVTRSVYEKLKGQFAFEPRGAIEVKGKGKVEAWVLRL
>NZ_CP009145.1|WP_017272053.1|1169844_1170198_+|hypothetical-protein
MLMKRPAFSTAVSLSLLALVSSRVNLSHAAEPTFAILQGMCRNTKDPLQQGYCTGFIEAIAIRIARDGKNCAFLQDYIDHANADLALSDLIADLNPAEYSEKAFDAVEKFFYNKGCS
>NZ_CP009145.1|WP_026029634.1|1169246_1169432_+|ISL3-family-transposase
MVDLEHHSVVDVLEDRSVESAKAWLQARPTIAVVSRGRCGLYAQAAREGAPQAPRWLIVFI
>NZ_CP009145.1|WP_014528417.1|1167248_1167701_-|DUF2721-domain-containing-protein
MNTPPIVTDLASVVQTSLAPVFLLAGTAGFVSIYTIRLGRVSDRLNEVADKGNQGKLFRMQLAYLRRRALALEVAVVLGVIAGICTGGAILNLLAGALAIGLRQENLFWFFGGAIVSLIGSLVAFLFELLIAGRNMLRQIRMDQIPTGQD
>NZ_CP009145.1|WP_040120812.1|1165147_1165534_+|hypothetical-protein
MGMPVQDQVGSEMIVYVAEISGRGIAAFDAANDIEAQAQLANRGLLRDLIVLQNEGRALWDGVAEIHVRTATPEETEIWQTSRAAAVQSGEDSDDEGRHVFLVPVIDPSHDKFDDDDDPHDDDDRDGD
>NZ_CP009145.1|WP_127535401.1|1163441_1164089_-|cytochrome-C
MARIKRLLLWVWKILTTPAATLSLAFLTLGGFVGGVIFWGAFNTALELTNTEEFCVSCHEMRANVYEELTRTVHFSNRSGVRASCPDCHVPHEWTDKIARKMQASKEVWGKIFGTINTREKFLDHRLELAKHEWARLKANDSLECRNCHSSAAMDLSKQTQRAAEIHTRYLLPGKATCIDCHKGIAHELPNMQPGWKLRPNSKERRCLMLRQSTT
>NZ_CP009145.1|WP_040120811.1|1162469_1162949_-|hypothetical-protein
MRATWVIPVTALVLLLDSSDGSAGQPGKSVDEPSKYVPSVGEIMTKIDLSRSKLWYSVKLRNWALAGYQLEQVKTGFNDVSRHHPDKSNFDFANAQKIANLIEEAIVARSDEQFQQSFALMTTECNDCHSAVGKPFLHVGAPKIPSPYSDKMLEPGAFR
>NZ_CP009145.1|WP_014528421.1|1161778_1162414_+|helix-turn-helix-domain-containing-protein
MNTSISASWGRYINAIPPQSGEAALAPLSSFVDGQCIYSFGERADQVYQVEFGAVRVYRLAANGRRQILAFHFGGNWFGLQSRDRHSSNAEAIGVTGVRCISLQEEPLFRPALFSAALDNVSAAQEHQLVIGRQSAIERVAAFLLEMSERSGYSRRFELSMSRVDVADYLALTVETVSRSLTKLKHRGFIELHGARGIELVGYRALQNLCL
>NZ_CP009145.1|WP_014528410.1|1181130_1181478_+|hypothetical-protein
MNKFLLMTAGLLLMPLPALSQSAPDSGSRDPGSMQDREIEDLLRSITDEVSGGSGGPRRGAAFLLRSGDATVAVRCDPRESMKDCVDLTTSLLEKARSAMPTGGGAPGTAPPPRP
>NZ_CP009145.1|WP_074853769.1|1181518_1181668_-|hypothetical-protein
MVAKTLDVTPQAERGIVLELRLREIALVTVDDAASQVLRIVNTLQECFR
>NZ_CP009145.1|WP_014528409.1|1182146_1183136_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MPTMRAAVVEAANGPFRVSDLEHPVPKSGEVLVRIKASGVNPLDTKIRAGAAAHARHQLPAVLGLDLAGIVEDVGGGVTRFSPGDEVYGMTGGVGGHQGSLAQYAAVDERLLAIRPSNLSMREAAALPLIFITAWEGLVDRVNARAGQTVLVLGAGGGVGHIAVQIAIALGADVYGVDSTSKGDYLRSLGATAIDYSSEEVESYVARHSGSKGFDVVYDTVGGAGLDTAFKAVARFGHVVSCLGWGTHALAPLSFKSATYSGVFTLIPLLTGEGREHHGDIMREATKLVEAGKVSPRLDPRTFTLETAANAHELIEHRKANGKLVIDVD
>NZ_CP009145.1|WP_014528408.1|1183384_1184101_+|hypothetical-protein
MNKLLDKVMVAHGSPSRWNDHQVVRAAALIAGDLCGNGVSGTTRQITVYPHLARALVEPSGSPSCRSDLVANRLSIIREDGTVISEIEDVRTMPMNYDPKARTDKVFGAFLACCTVRTLLTTPFLLAMKGVEVNELIPWNEDGDRWRVLRAEFPPGFDTAARVHDFFFGGDFLLRRHDYHVDGDTGITITELVSDYVDNHGIRMPRKLRGYRRCSDLNPDLARVLISIDISTLEFSAT
>NZ_CP009145.1|WP_014528407.1|1184150_1185341_+|PLP-dependent-transferase
MKDLTRCVVTPKVDTEGFVALGAGVYRASTIVFENAEAYANRGKRGPDGYSYGLYGTPTTRTLEAKLTVLEQGVRTFLLPSGQAANAIAMLPFLRAGDGVLLADSVYPPVRDFANTDLARFGVEVGYYDPADPSDLEARLNDRTKIVWCESPGSTTMEVQDLPRIADIAHRYGALLGCDNTWATPLNYKPLSLGADIVTEGLTKYISGHSDVLLGSLTVRDEQLTAPIRSTLGRLGICVSPDDASLVLRGLETLGVRMRHASEGALQLISRIQAADIVDRVLHPALPTSPGHSIWKRDFLGSSGVFGIVFKEGLSRHVAPSLDVLKTFAIGASWGGTRSLIAPMPVKAYRSVTQWDGDDLILRLSVGLEDHQDLVEDVDALLKEISARRSAWTIPR
>NZ_CP009145.1|WP_080726228.1|1185618_1185960_-|carboxymuconolactone-decarboxylase-family-protein
MSMIDWNSYHDQVLAGVRELASLNPDVIRGYQAIGGAARKSNLLGSKVNELIALAAAVSLRCDGCIVVHTDAALKAGATREEIAEALGTAIGVNAGAGLVYSTRVMDAVKSKS
>NZ_CP009145.1|WP_017268105.1|1185989_1186907_-|MBL-fold-metallo-hydrolase
MAASTFAVSGGWLSPRQVFAKAQGIVDMIRDEAAKAPIKVHQARGGVAILEGSGGNIAVLTGEDGKVLVDGGITASRHRILDALAGLGKQPVRHLINTHWHFDHTDGNEWLNGEGAAILAHENTKKHLMTVQKVDDWDFEFPRPPLAAVPSETVGDETSLKLNKSTLMLKHHPNAHTDGDISVTFSEANIVHTGDLYWNGIYPFIDYSTGGGIDGKIKAVEEILSRVTDETIVIPGHGQPLSKKADLSDYRTMLVDIRGNVARLKAEGKPIDEVIAAKPTEQFDAKWGQFVIGPEFFTRLVYHGV
>NZ_CP009145.1|WP_014528404.1|1187018_1187843_-|alpha/beta-hydrolase
MGTITTKDGTQIFYKDWGKGQPVVFHHGWPLSADDWDNQMLFFLGKGYRVIAHDRRGHGRSTQTATGNDMDTYAADVAELADALDLRDAIHVGHSTGGGEVTRYVAQYGKGRVAKAVIISAIPPVMLKSDSNPGGLPIEVFDDLRAQLAANRAQFYLDVPTGPFYGFNRKDAKVSPGLIQNWWRQGMIGGAIAHYECIKVFSETDFTEDLKKIDVPVLVMHGDDDQIVPIADAALLSIKLLKHGTLKVYNGLPHGMCSTHPDIINPDLLAFFQA
>NZ_CP009145.1|WP_014528402.1|1190399_1191035_+|response-regulator-transcription-factor
MSHGDHAVFVIDDDKRVRDGLSELLESRGIGVTTFASAREYLKAPKPENPSCLVLDVRLPDIDGFELQARLANEPHPPIVFITGHGDIPMTVRAMKLGAVDFLAKPFRDHELLAAIQTALERDREARRDRSVLNELQGRLNRLSARERDVLPLVVSGLMNKQGAAELGISEITFQIHRGNLMRKMHADSLADLVRIATKLGIPITHSRHGN
>NZ_CP009145.1|WP_040120817.1|1191038_1191419_+|response-regulator
MLAQDSHTFAIVDDDKRVLDGLRELLESVGYVVRTYRSPRSFLSTEDLSTCHCVITDIRMPSMDGFELEQAVRSREPAMPMILMTGRNDIDDLGFPGADDRRVFMRKPLNSQVLLQAVTRLLAFRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	709941-709998	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	618048-618105	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	534472-534529	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	320258-320315	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	295298-295355	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180665-1180722	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086301-1086358	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186250-1186307	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	275823-275880	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	7342-7399	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	819905-819962	0	1.0
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	347456-347513	1	0.983
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	403311-403368	1	0.983
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	347117-347174	1	0.983
NZ_CP009145_1	1.1\|1180665\|58\|NZ_CP009145\|CRISPRCasFinder	1180665-1180722	58	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	373772-373829	1	0.983

1. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

2. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

3. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

4. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

5. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

6. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

7. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

8. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

9. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

10. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

11. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	Protospacer
**********************************************************

12. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

13. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggtgaccggcgcgagcggctcatggacctgatc	Protospacer
***************************.******************************

14. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

15. spacer 1.1|1180665|58|NZ_CP009145|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

cctgatggaactgatcggcgaccgcggcgaccggcgcgagcggctcatggacctgatc	CRISPR spacer
cctgatggaactgatcggcgaccgcggcgaccggcgcgaacggctcatggacctgatc	Protospacer
***************************************.******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1110603 : 1118930

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015242463.1\|1110603_1111482_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.5e-21	27.6
WP_014531797.1\|1112072_1112522_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.8e-18	48.3
WP_014528059.1\|1113607_1113904_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.4e-21	57.6
WP_010967384.1\|1113979_1115617_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.5e-176	63.1
WP_003535606.1\|1117806_1118010_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_014989928.1\|1118274_1118547_-	hypothetical protein	NA	NA	NA	NA
WP_107592306.1\|1118561_1118930_-	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	5.0e-08	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009144

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection