CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008855	Bacillus sp. X1(2014) strain X1 chromosome, complete genome	2 crisprs	RT,DinG,cas3,DEDDh,csa3,cas5,cas8c,cas7,cas4,cas1,cas2	0	10	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008855_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008855_1

2706271-2707495

TypeI

I-C

Consensus_repeat	Method
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CRT

18 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP008855_1

>merge|NZ_CP008855|1|2706271-2707495|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAATACGAAAATTGCGTGAGCAGGGTTTGTAGGGGAGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAATTACCGCTTTATGCTTTGATTCGTCCCAAATTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCCTTCTAGGGGGGTTCCCTTGGTTCCCCTTATTTGTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCCTCCTATTTGTTGATCGCTGATATATGGGCATTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTCTCTTGAATAACTCTGACCTTTTTTTCGTATTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATGTGCGGATATTGAAAAAATTGTCGAAAAATCTCTGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAAATTTCCCCCCATTAATAACATCCCATTGATCCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACAAATTCTTTTGCGATTTAATGGACGACCAACAGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCTCTTTTTAGAACCTATTCACCAGCTTACCCATGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCCCACATATCATCACCGTCCTATAAGTAATAAAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACGCCGTCCGGCCATTCGACCTGCCGCAACGCTACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTGCTCGCTTCTTACGTTCCTCGGCCTCTTCCCTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATGCAACTGGTTGACTTGTCGGAACTCTAAAATTTTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTCTGAGCCACAGTGATAACATTGACCACCACTAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATCAGTCTCGCCCGCCTGAGTGATTGCAAAAATGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATACTTCATTGTTTGCGTTATTTTCGTCATTTACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTCGACCGTCGGTTGCTCGATGAGTTTCCGCTTCGGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCTAATTCTTTCGCAATTTTAGCGTCACTCCAATTTGTCGCACTCCTCGTGAGTGCGTGGTGAATCGG

>NZ_CP008855|1|1|2706271-2707428|PILER-CR
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGAAAATTGCGTGAGCAGGGTTTGTAGGGGAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AATTACCGCTTTATGCTTTGATTCGTCCCAAATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTTCTAGGGGGGTTCCCTTGGTTCCCCTTATTTGT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTCCTATTTGTTGATCGCTGATATATGGGCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTCTTGAATAACTCTGACCTTTTTTTCGTATTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTGCGGATATTGAAAAAATTGTCGAAAAATCTCTG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAATTTCCCCCCATTAATAACATCCCATTGATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACAAATTCTTTTGCGATTTAATGGACGACCAACAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTCTTTTTAGAACCTATTCACCAGCTTACCCATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCCACATATCATCACCGTCCTATAAGTAATAAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGCCGTCCGGCCATTCGACCTGCCGCAACGCTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGCTCGCTTCTTACGTTCCTCGGCCTCTTCCCT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GCAACTGGTTGACTTGTCGGAACTCTAAAATTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTGAGCCACAGTGATAACATTGACCACCACTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAGTCTCGCCCGCCTGAGTGATTGCAAAAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATACTTCATTGTTTGCGTTATTTTCGTCATTTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCGACCGTCGGTTGCTCGATGAGTTTCCGCTTCGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT

>NZ_CP008855|1|1|2706271-2707495|CRISPRCasFinder
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGAAAATTGCGTGAGCAGGGTTTGTAGGGGAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AATTACCGCTTTATGCTTTGATTCGTCCCAAATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTTCTAGGGGGGTTCCCTTGGTTCCCCTTATTTGT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTCCTATTTGTTGATCGCTGATATATGGGCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTCTTGAATAACTCTGACCTTTTTTTCGTATTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTGCGGATATTGAAAAAATTGTCGAAAAATCTCTG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAATTTCCCCCCATTAATAACATCCCATTGATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACAAATTCTTTTGCGATTTAATGGACGACCAACAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTCTTTTTAGAACCTATTCACCAGCTTACCCATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCCACATATCATCACCGTCCTATAAGTAATAAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGCCGTCCGGCCATTCGACCTGCCGCAACGCTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGCTCGCTTCTTACGTTCCTCGGCCTCTTCCCT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GCAACTGGTTGACTTGTCGGAACTCTAAAATTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTGAGCCACAGTGATAACATTGACCACCACTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAGTCTCGCCCGCCTGAGTGATTGCAAAAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATACTTCATTGTTTGCGTTATTTTCGTCATTTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCGACCGTCGGTTGCTCGATGAGTTTCCGCTTCGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTAATTCTTTCGCAATTTTAGCGTCACTCCAATTT
GTCGCACTCCTCGTGAGTGCGTGGTGAATCGG

>NZ_CP008855|1|1|2706271-2707495|CRT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGAAAATTGCGTGAGCAGGGTTTGTAGGGGAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AATTACCGCTTTATGCTTTGATTCGTCCCAAATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTTCTAGGGGGGTTCCCTTGGTTCCCCTTATTTGT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCTCCTATTTGTTGATCGCTGATATATGGGCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTCTTGAATAACTCTGACCTTTTTTTCGTATTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTGCGGATATTGAAAAAATTGTCGAAAAATCTCTG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAATTTCCCCCCATTAATAACATCCCATTGATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACAAATTCTTTTGCGATTTAATGGACGACCAACAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTCTTTTTAGAACCTATTCACCAGCTTACCCATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CCCACATATCATCACCGTCCTATAAGTAATAAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACGCCGTCCGGCCATTCGACCTGCCGCAACGCTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGCTCGCTTCTTACGTTCCTCGGCCTCTTCCCT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GCAACTGGTTGACTTGTCGGAACTCTAAAATTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTGAGCCACAGTGATAACATTGACCACCACTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAGTCTCGCCCGCCTGAGTGATTGCAAAAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATACTTCATTGTTTGCGTTATTTTCGTCATTTAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCGACCGTCGGTTGCTCGATGAGTTTCCGCTTCGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTAATTCTTTCGCAATTTTAGCGTCACTCCAATTT
GTCGCACTCCTCGTGAGTGCGTGGTGAATCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008855.1\|WP_038539859.1\|2723383_2724148_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377906
NZ_CP008855.1\|WP_038539840.1\|2712567_2712771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008855.1\|WP_038539828.1\|2703260_2704124_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NZ_CP008855.1\|WP_038539836.1\|2711377_2712496_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP008855.1\|WP_051968280.1\|2721396_2722809_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP008855.1\|WP_038539813.1\|2696562_2697663_-\|CotS-family-spore-coat-protein	unknown	unknown	gnl\|CDD\|131952
NZ_CP008855.1\|WP_038539844.1\|2713115_2716799_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP008855.1\|WP_038539833.1\|2704769_2705801_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP008855.1\|WP_038539822.1\|2700628_2701348_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP008855.1\|WP_038539851.1\|2718319_2718883_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP008855.1\|WP_081905136.1\|2695135_2696566_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP008855.1\|WP_038539854.1\|2719735_2720167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008855.1\|WP_038539848.1\|2716788_2718360_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP008855.1\|WP_038542144.1\|2718910_2719630_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP008855.1\|WP_051968278.1\|2694316_2694784_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367841
NZ_CP008855.1\|WP_038542142.1\|2705810_2706101_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP008855.1\|WP_038539857.1\|2720354_2721284_+\|glutaminase-A	unknown	unknown	gnl\|CDD\|274797
NZ_CP008855.1\|WP_038539831.1\|2704113_2704773_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_CP008855.1\|WP_038539825.1\|2701344_2703243_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP008855.1\|WP_038539818.1\|2698059_2700489_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NZ_CP008855.1\|WP_038539859.1\|2723383_2724148_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	8.82674e-45
NZ_CP008855.1\|WP_038542144.1\|2718910_2719630_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	4.94864e-105
NZ_CP008855.1\|WP_038539828.1\|2703260_2704124_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	2.38591e-133
NZ_CP008855.1\|WP_038539836.1\|2711377_2712496_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.59406e-61
NZ_CP008855.1\|WP_051968280.1\|2721396_2722809_-\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.13221e-152
NZ_CP008855.1\|WP_038539813.1\|2696562_2697663_-\|CotS-family-spore-coat-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	4.04185e-114
NZ_CP008855.1\|WP_038539844.1\|2713115_2716799_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP008855.1\|WP_038539833.1\|2704769_2705801_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP008855.1\|WP_038539822.1\|2700628_2701348_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.50679e-104
NZ_CP008855.1\|WP_038539851.1\|2718319_2718883_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	2.97169e-29
NZ_CP008855.1\|WP_081905136.1\|2695135_2696566_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.75937e-71
NZ_CP008855.1\|WP_038539848.1\|2716788_2718360_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP008855.1\|WP_051968278.1\|2694316_2694784_+\|hypothetical-protein	gnl\|CDD\|367841	pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.	2.70753e-05
NZ_CP008855.1\|WP_038542142.1\|2705810_2706101_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.72164e-33
NZ_CP008855.1\|WP_038539857.1\|2720354_2721284_+\|glutaminase-A	gnl\|CDD\|274797	TIGR03814, Glutaminase_1, glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). [Energy metabolism, Amino acids and amines].	0
NZ_CP008855.1\|WP_038539831.1\|2704113_2704773_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	5.78677e-26
NZ_CP008855.1\|WP_038539825.1\|2701344_2703243_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.48073e-177
NZ_CP008855.1\|WP_038539818.1\|2698059_2700489_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.09129e-79

>NZ_CP008855.1|WP_038542142.1|2705810_2706101_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTVSSGGKKRLRKVAKECQNYGQRVQNSVFECNLDASQFAALKFKLADIIDKNQDSLRFYQLGKNYKTKVEHIGIKESIDLDSPIIF
>NZ_CP008855.1|WP_038539833.1|2704769_2705801_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFINQSDVYLSLDGENIVLLKDQEQLGRLPLHNLESIVTFGYTGASPALMGYCAERNISLVFFTMNGRFLARVIGKSRGNVVLRKKQYRVSDDEKASVKIARNFICGKIYNNKWILERMTRDYPLRVDVTHFKEVSKHLSSILLEVRECEDLERLRGLEGQAASSYYKLFDQMILQQKEDFYFRSRSRRPPLDNVNAMLSFAYTLLANDIASALEGVGLDAYVGFLHRDRPGRASLALDVMEELRGVYVDRFVLSLINKRIVNKDDFFKKENGAVIMTEGARKKLLAAWQNRKQEKITHPFLGEKLQWGLVPHAQALLLARFLRNDLDEYPPFLWK
>NZ_CP008855.1|WP_038539831.1|2704113_2704773_+|CRISPR-associated-protein-Cas4
MDYKDEDSYLMLSGIQHFQFCKRQWALIHIEQQWEENVRTVEGQYLHQKADQPFIREKRRDKLIVRGMPVKSNELKITGICDVVEFIKDKNGVEIKGEEGKYIAYPVEYKRGKPKKNDEDILQLTAQAMCLEEMLLCEIQKGYMFYHEIKHRVEVSLTIELKNKVRSIFEEMQDYYKRRHTPKVKTGSFCGSCSLQNNCLPKIMNKRSVKSYIEGSIRD
>NZ_CP008855.1|WP_038539828.1|2703260_2704124_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTILDHKIDFAVVFSVTKANPNGDPLNGNRPRQNYDGHGEISDVAIKRKIRNRLQDMGESIFVQSNDRATDNFKSLRERAESNAALERILKSKNSSSDDFAAIACEQWIDVRSFGQVFAFKGSGNGSGVSVGVRGPVSIHIATSVNPIDITSMQITKSVNSEPGKEKGSDTMGMKHRVDFGLYVFYGSINTQLAEKTRFTSEDAEKIKQALVTLFENDASSARPDGSMEVHKVYWWEHNSKLGQYSSAKVHRSLQIKPIVENPKSFEDFSISLKELDGLKVEVIDGL
>NZ_CP008855.1|WP_038539825.1|2701344_2703243_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLFNLYQTYESNLGQVGVIEKKYNEQEYTLLPISHTTQNAHIEVEITEDGEFHSAKVVDKNDANTLIPCTESSASRSGSKIAPYPLHDKLSYVAGDFKAYGGKIKKEEPFTYYIEQLEKWAKSPYATPKVRSIFTYLAKKRLINDLVQEKILFLDANGQLIKSWDKRYEALHGEKPAIFSVIAGDQESAFVRFNVYSPDKVLTKVWKDVEMYDSFIRYYQDSLGEEDLCFVTGIRLPCTDRHANKIRNAADKAKLISANDTSGFTFRGRFNKGHEVASISYEVSQKAHNALKWLINRQGKTIDNRVFLVWGNDDLDVPDVTEDSFDLLSIGLSTNEKNEKIFYTGQDFANEVSKAIDGYRNNLSTKSNVNIIILDSATTGRLAVLYFRNLHKEQYLDRLAKWHSTCVWLHRYRKNDKGENVPFYGAPSTKDIAYAAYGPKANEKVVKGLMERMLPCIVDEKKIPLDIIKSAFYRASNPVSLEKWEWEKTLSVTCALINKQEGLDVALDNENNDRDYLFGRLLAIADVLERRALGSDETRATNAIRYMNSFSKHPARTWKTIQESLQPYQARLGTKAKYLSNLIDEVASRIQFEDFNNKSLSGKYLLGFYSQRHDLYQKREKVNVDEQPSI
>NZ_CP008855.1|WP_038539822.1|2700628_2701348_+|type-I-C-CRISPR-associated-protein-Cas5
MRNSIEFEVYGKYALFTDPLTKMGGEKLSYQVPTYQALKGIVESIYWKPTLLMVVDEVRVMNPIRMESKGVRPIEYGGGNTLAYYTYLKDVRYQVRAHFIFNPHRPDLAFDRNEHKHHNIMKRSLRAGGRRDIFLGTRECQGYVEPCVFGEGVGFYDNYGEINLGTMVHGINYPDETGRNQMEVRLWNPVMKNGVIQFIRPDQCTQIRKIKEIKAKSFDQSNVESSEVLFKQLEGEVKE
>NZ_CP008855.1|WP_038539818.1|2698059_2700489_+|CRISPR-associated-helicase/endonuclease-Cas3
MNFIAHIRESDKQIQTVEEHLLGVKELAETYGEKLGIKHLTGLAGMLHDMGKYSDEFRNYILEAVNNHNAPPKRGSVDHSTAGGKLLYELYHIGKNINPYKAILAEIVGNAIISHHSYLQDFLSPDLESNYLKRVRDKELSEYAKSKETFFKHVMNEIDFHSYVQKAAEELEKFLGKETPDNWGRQLMFLTKFIFSALIDADRTNTRLFEENKNDSSVKDYKKLFDTYYKRLMKKIESFKSHPQANNPINLLRASMSDQCDQFAENPSGIYTLSIPTGGGKTLASLRYALKHAKLYNKKRIIYVVPFTTIIEQNAEEVRKILLDDVNILEHHSNVIEDENVDDESLSGRMSVHQRLKLAKDNWDSPIIFTTMVQFLNVFYAKGSRYIRRLHNLSESVIIFDEVQKVPISCVSLFNYALNYLKEYAQSSIILCTATQPALDFVEHKLEINTEAEIIRNLEDVIEAFKRVEIVDLATKESYDNNKLADFIETKIEEVQSVLVILNTKSVVKNLYNLLKERYKGISIYHLSTSMCAAHRNTIFDEIRSKLKKGDKIICISTQLIEAGVDVSFECVIRSLAGLDSIAQAAGRCNRHGEKGIKNVYVIDHVEENLDRLNEIKIGKEISKKILIDRKRDPSTHGGNILSKQAMERYFQGYYTELNSNLNFFIRKLQREMTELLTAIKEQSSYHRAYRNREGKNLPLFLVNSYGTAGKYFHVIDNETTSVIVPYSKGKDIITELSSNGSISDLTSLLRKAQQYTINLYKNELNNLSKNGGIVSYLDGKIFALKEGAYNKEFGLNIENDSVLDSLVF
>NZ_CP008855.1|WP_038539813.1|2696562_2697663_-|CotS-family-spore-coat-protein
MAELIIEPWIVDETTHDFFVPEYIENLAHLVLKHYDLSVRNMQIITTKPDKGGAIWKLETKSGPKSLKLLHRRPTRSLFSLGAQEYLVDVQAARVPPIIKTKDGKNFVEAGGKLWFVAEWIEPLTPVTKDLEGAKQLCYALGEFHRLSKGYVPPQNAEIASRLYKWPKTYEKVLKKMDWLRNIAKVYSDMPASSHLLNGVEKFEQQAIQSINSLNQSSYYDLVQQGNAYWGLVHQDYGWSNGQMGKNGMWIIDLDGVAYDLPIRDLRKLISGTMADLMKWDTTWVREMIATYHEANPISPQLYEILMIDLSLPNEFYKNLKEAVYEPEVFLNEQTAQLIQTIIETDQSKWPVLNEIKDDWKGVKTK
>NZ_CP008855.1|WP_081905136.1|2695135_2696566_-|glycosyltransferase-family-4-protein
MKILMIGTEKLPIPPILGGAIQTYIAGTLPYLSKVHDITVLGISNSQLSDQETVNGIRYVRVPGMVFEIYKEHVVKFVEANEFDLIHIFNRPRLVLPIKNVAPNSRITLSMHNDMFNPEKISPEEATAVLEHVSQIVTVSDYVGNVIRELYPQSSAKIRTIYSGVDSERFLPGNHPKMQKRRNEIRKAHGLENKTVILFAGRLSHNKGVDRLIRALPDLSKKFKNLALVIVGSKWFSQEGISDYVAYVRALAKRLPIPVVTTGYVAQDEIQNWFAAADLFVCTSQWQEPLARVHYEAMAAGLPIVTTARGGNPEVIIEGVNGLIVKNPEDPKRFVDAISAILSDKSLIKKMGEEGRNLAVSKYRWDRVASELLKFWEDSMQSTVTELTDINTISFEQPEQVFLTKLKDKAYSQPESTPSIKSEKKKSKKDQKKLDKKSKKEQKKREEKLKKEQKKLKEKLKKDKKRKDDKRKNESA
>NZ_CP008855.1|WP_051968278.1|2694316_2694784_+|hypothetical-protein
MEKNLNNILLKEDDVFGGKLEYQNSFQTMMGSLSNDFVIKLESVSEESSDEIESADEESEDGLTESGDESTEEESEDGLTEEESGDESTEEESEDGILFEESGDESTEEESEDGVLFEESGDESTEEESEAGLFFEESGDESTEEESGDGDESSE
>NZ_CP008855.1|WP_038539836.1|2711377_2712496_+|FAD-binding-oxidoreductase
MSKIIVIGAGILGASTAYHLAKMGAEVTIVDRQDRGQATEAAAGIVCPWLSQRRNKAWYQLVKAGARYYPKLIADLIADGEKDTGYRQVGAINLHTDIDKLEQMAERARKRREDAPEIGEIHILSPDETKKLFPPLSNEYGAVFVSGGARVNGKALRNALMNAAIKHGAKLLHGNAELMRMDNCSVGVSLSGEKMAADKVVVTAGAWANELIKPLGINFLAVPQKAQIVHLELPETDTCSWPVVMPPGNQYILAFENGRIVLGSTHEDDTQFDTRVTAGGIHEILSKGLHVAPGLMNATMVETRVGFRPFTPGFLPVFGVLPGYESVLVANGLGASGLTSGPYLGAELAKLALGLQPELDLNNYDLTTAIGN
>NZ_CP008855.1|WP_038539840.1|2712567_2712771_+|hypothetical-protein
MGKDNDNIKEILENSIEIEEDLMKTYLITAERIHDDGELKERLENFAEGNAKRTKQLLDELEEMKDK
>NZ_CP008855.1|WP_038539844.1|2713115_2716799_+|nitrate-reductase-subunit-alpha
MRKKISPLIKKLTYFGRTHDIAENSALQEADREAEGYYRERWQHDKVIRTTHGVNCTGSCSWKVHVKDGIITWETQQTDYPTTGPDMPEYEPRGCQRGATFSWYIYSPIRVKYPYIRGELLRLWQEARKKHSDPVQAWKSIAEDPVKRKSYKTARGKGGYVRATWDEIYELISAQMIHTIQEYGPDRIVGFSPIPAMSMVSYASGARFINLIGGNLLSFYDWYADLPPSSPQVWGEQTDVPETSDWFNSTYLLIWGSNVPQTRTPDAHFMVESRYKGTKVVCISPDYAEFVKFADNWLPVQAGMDGALAMGMTHVILKEFYVDNQTKFFEDYVKQFTDLPYLITLSKEGDHYVAGRFLRASDIGMQTEYGDWKTIVWDQKSGKLAIPNGSMGHRWEGKGKWNLEMRDSENQVDDLDPMLTFLGNEDETGILHLPFYGLEQKEVLKRGIPIKKIDQNGQTIYVTTVFDILMAQAGVKRGNLPGDYPENYDDPKPHTPAWQEKISGIDRKLCAQIAREFAQNAVDSGGRSMIIMGAGINHWYNSDTIYRAILNLVMLCGCEGVNGGGWAHYVGQEKVRPLEGWQTIAMARDWGGPPRLQNGTSFFYFVTEQWRYDDQRPEEHLSPLYDKPRYKTMADYNALAVRLGWVASYPQFNTNSLKIYEQANASNPEEVAKYVADQVKQGNLKFSIEEPSNPINFPRTMFVWRANLIGSSSKGHEYFLKYMLGTHSAVLAEPYKELGTTEVDEKMDPPEEGKLDLMIDIDFRMTSTGLYSDIILPAATWYEKYDISSTDTHPYIHPFNPAITPPWEARSDWDNFKKLAKTFTEMAKKYFPNPVKDVVTTPLLHDTVDEISQKFGLVPDWKQDGSEPIPGQNFPRVHVVERDYTRIFDKYVALGTNTKIGAKGLAWDVKDEYNELKDILGTSTESLEYRDCPDLSHDKNVAEAILTLSSTTNGSVNQKAWVDLEKKTNQKLKHLSEERAEEHISFDEISAQPRKVITSPVFSGIETGNRRYAPFVINREYLVPFRTLTGRQHFYLDHEMMFEYGEELPVFKGPIKRLAFYDKDWKPESAKQEIRLRYLTPHFKWSYHSTYFDTLPMLTLFRGGPHIWLNLEDAKSVGINDNDWLEIYNRNGIVVARAVVSHRIPRGVTYMYHVQERTINVPGSTITKQRGGTFNSPTCLTMKPTHLIGGYAQLSYGFNYYGPTGNQRDEQVMVRRLDRSEVDWLEN
>NZ_CP008855.1|WP_038539848.1|2716788_2718360_+|nitrate-reductase-subunit-beta
MKIKAQFGMVMNLDKCIGCHTCSVTCNNTWTNRPGAEYMWWNNVETKPGVGYPKEWENQDTHKGGWELRNGKIELKAGGRLQKLLNIFYNPNMTKIDDYYEPWTYTYDHLIKSPKKEHQPVARPKSLLTGEYMDIQWGPNWEDDLAGVYETGKKDPNMNGVDAQVIQEFDQAFMMYLPRICEHCINPPCVSSCPSGAIYKRDEDGIVLIDQDACRSWRFCTTGCPYKKTYYNWKTNKAEKCTFCFPRIENGQPTVCSETCVGRLRYIGVVLYDADWVTAAASVQNEKDLYEAQLNIFLDPFDPEIIKEAKSQGIPEDWIEAAQASPVYKLAVLHKVALPLHPEYRTLPMVWYIPPLSPIINQFGGLIDNLDPKVIFPTIDQFRIPIQYLANLMSAGDTEVIRRVLRKMVAMRTFMRSYHLNKPYDEQVLESAGLTKESAIDLYELSAIAKYNDRFVIPKSHRERAGNMYEAQGSTGYDFMEVCNGCSEGEDTFDAKELYAFSEQYWRDFEIGGAMDGRKTVDF
>NZ_CP008855.1|WP_038539851.1|2718319_2718883_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MVVPWTEEKQLIFKLCSIMLRYPDQAWVKSEEMYEMISSLEDPNIKKAFLTFWDYIVQTSWEELTENYVKWFDLSESTTLHLTYGIFGDNRERGPAFVRLKLEFAKAGFYLKENELPDYLPLILEFASVAEPKFAQKVLAIHWKAITKLLEELKKEQNPYMSLVHVCVMTMEKLLPKTEQKMNHHAS
>NZ_CP008855.1|WP_038542144.1|2718910_2719630_+|respiratory-nitrate-reductase-subunit-gamma
MTYFDIFLWVVVPYISLTIFVLGHIYRYNTDQFGWSAKSSEFLHKDALLKWGSILFHYGIIFVFFGHVAGVLIPKGFYDAIGISEEMYHFGAVWFGGLAGVATVIGGFLLTVRRMTNKRVARNSAKMDLLTLLWIGVVVVIGFTNTVGYTASGGEFDYRTTIGPWFRGILTFRPYPDLMAYAPIGFQLHVFAAFILFALWPFTRLVHVWSLPLEYLTRKYVLYRKMAPRRTVREVNRRN
>NZ_CP008855.1|WP_038539854.1|2719735_2720167_-|hypothetical-protein
MSGPSLYKLDAHRSIHEGVFTEGRDLLELLLKVLHEKADNYEKHALMAAEALVEHWETRLIAHADSEEEGFYLEKVKQNPDLLEKVTWLKRDHEIFRIIVKEIRELLRAGKITEDIIDRFKAISVIGKIHNEDEETYLFDDHS
>NZ_CP008855.1|WP_038539857.1|2720354_2721284_+|glutaminase-A
MACQSNDELRALVEKARPIAKEGKVADYIPALGKANPNDLSIAIYYPDGNCISAGDIDRKITLQSISKVISLALVLMDRGPSYVFEKVGMEPTGDPFNSIAKLETTVPAKPLNPMINAGALVVTHMLKGNSVEERFQRLLSFIQELAGNQSINYCAEVARSEFETAHLNRSLCYFLKQHHIIDEDIEELMDLYTKQCAIEMTCFDLSRIGLVFAMDGVDPESGRQIMPLDVARICKTFMVTCGMYNASGEFAIKIGIPAKSGVSGGIMGAVPGRFGIGIFGPALDEKGNSIAGIKLLELLSKTYSLSMF
>NZ_CP008855.1|WP_051968280.1|2721396_2722809_-|peptide-MFS-transporter
MEATMDHQSKKHPPGLYLLFLTEMWERFSYYGMRAILILYLTKSLVSGGLGMKESTALMLYGFFTGAVYFTPLIGGYLSDRFLGQRLAVTIGGITMACGNLVLFAHQSFTAVYIGLGLLIIGNGFFKPNISTIVGELYGPKDKRRDAAFTIFYMGINTGAFFAPLVIGAITDKWFAVQANGVVEYGYKYGFLASAIGMVIGQVLFNALGNRFLGDIGKKPVGKPKVSTSGTVEKQTLTKVEKNRTAVIFILATFVVFFWAGFEQAGGALSIYTDKFIDRTIFGWEIPTSWFQSVNPLFIIILAPLVSMLWVKLSNSKRGDLAVPTKMGLGMIMLGLGFIVLLFAIMQTGSDETNITVKANILFIIFTYFFHTIGELFLSPVGLSFVSKYAPVKFSSLLMAVWMASSFVANIIAGQLGAFTESMGYFEVFSVIGVSVIVLGLILLSLSKKLVKMLGDDEKENMEEQVAKAN
>NZ_CP008855.1|WP_038539859.1|2723383_2724148_+|MerR-family-transcriptional-regulator
MEYTVQKLANLAGISTRTIRYYDEIGILKPARINSSGYRIYGQREVDRLQQILFYRELGVCLDDIKSIMTDPSFDGAKALEEHLKKLLEKRKQLDLLIANVKKTIAAKEGRIHMSDKEKFEGFKNKMLEENEKKYGKEIREKYGEEVVEKSNEKFRNMTKEQYEEVTHLEKQVTQTLAEAFKTGDPKGELAQKAADLHKKWLMYFWPEYSKEAHAGLAQMYVDDERFKAYYDKEQPGTAEFLREAILVYTGIKQ

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Crispr_ID: NZ_CP008855_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008855_2

2708873-2711303

TypeI

I-C

Consensus_repeat	Method
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CRT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CRISPRCasFinder

36 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP008855_2

>merge|NZ_CP008855|2|2708873-2711303|CRT,PILER-CR,CRISPRCasFinder
TAGTTTAGTGTTGACATACCATGGATTGAAATAAGTGTCCGAGAGTATCCATAGCAAGGATATTCTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATTATGCACCTTAAATATACAAACCCAGACGCACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACCTCCTTTCATTGTTTCTTTCTGTAAAACTTCCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCTGCAAATGGTGCCGACCAATCAGACGGAAAACTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACTGTCTAGGATAGCTTTTAGAGACTCATCCCATGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATCAATCCCTTTCTTATTTAAAATTTTTTATTTCCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATCAATCCCTTTCTTATTTAAAATTTTTTATTTCCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAACACCCGCTGGATTCCTTCAAACATTTCACGCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTCGTCGCTCATAAACCATGCTTTAACGCTACAAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTACGTACAACTTCGATTACAAACGTTTCATCACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCGCTGTCTTGCGCTCGCAAAGTTCTTGCATCTTAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATTAGGGAAACATTCTTTTACGATACTAGTTTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATCGAAAATGATCGAGTAGTTACTGATTCCCTAACAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTATATCTTATATCCAAACATCATACACTAAAACACCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACCGTTTTGAATCGAATCATACGCCAGGTTTCCGAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAAAAGCATTACTTTAACCGGGGAAGAATTCGGTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTTTCGGTTTAATAGGGAAATTAGCAATTACCCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATATTGGCTTTATTTGGGCTTTTAGCCGTTGGGGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTTCGTATAGACGAGCGTGTATTTGGTAGCTGACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAAAAAGCCGGATATCAATGGAGAGTTGGTGGCGAATGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATATGCGTCACCCCTTCGCTACATTTTGGAATATGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATGTTTCATCAATCCCGCACTGAATAACATTTAGCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATGGAAAAAACAAAGGAAAGACACTTAAAGAAATCTAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCATACCTGCATTAACCATTAAACCAGTAGCTGCAGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTCTAAAATGCTGCTCATTCTTGGTCCATCTACTCGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATAAATTGGAAAAGTTTTTTTATAGTAAAACCAACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATAAAAGCAGCAATTTTGGCTCGATCATCCCTTAACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTGTTGCATTCCCATGCGAACACGTTCAGCAAGGTTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACTAAGAAAGGGATTGATAACATGAACACACTAGAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATATGACGTTTTCGGATAAACATCTTTTCTGTTTCCGGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCGTACCAATCCCAATGGGTATTACCCTTATTGTCCACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCACGATCCTGCAACTCCACCCCTTTTTGAAATCCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATACCAATAACTAAGAAAGTAGTACAATGACATCATTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTAGATTACGTAGAAGAACAAGAACGTCACAGACGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTCTTATGTGCTTGTTTTTAACTTTCTTCAACCCTTGTCGCACTCCTCGTGAGTGCGTGGATTGAAATTTATTAAAAGGGTTAAAAAACATAAACGCAAAACTTCACACTCCCCGCCTGTTCGCGAATTGAAAT

>NZ_CP008855|2|2|2708873-2711303|CRT
TAGTTTAGTGTTGACATACCATGGATTGAAAT	AAGTGTCCGAGAGTATCCATAGCAAGGATATTCTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTATGCACCTTAAATATACAAACCCAGACGCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCTCCTTTCATTGTTTCTTTCTGTAAAACTTCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTGCAAATGGTGCCGACCAATCAGACGGAAAACT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTGTCTAGGATAGCTTTTAGAGACTCATCCCAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AACACCCGCTGGATTCCTTCAAACATTTCACGCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCGTCGCTCATAAACCATGCTTTAACGCTACAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTACGTACAACTTCGATTACAAACGTTTCATCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGCTGTCTTGCGCTCGCAAAGTTCTTGCATCTTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTAGGGAAACATTCTTTTACGATACTAGTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCGAAAATGATCGAGTAGTTACTGATTCCCTAACA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TATATCTTATATCCAAACATCATACACTAAAACACC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCGTTTTGAATCGAATCATACGCCAGGTTTCCGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCATTACTTTAACCGGGGAAGAATTCGGTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTTCGGTTTAATAGGGAAATTAGCAATTACCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATTGGCTTTATTTGGGCTTTTAGCCGTTGGGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTCGTATAGACGAGCGTGTATTTGGTAGCTGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAAGCCGGATATCAATGGAGAGTTGGTGGCGAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATGCGTCACCCCTTCGCTACATTTTGGAATATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTTTCATCAATCCCGCACTGAATAACATTTAGC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GGAAAAAACAAAGGAAAGACACTTAAAGAAATCTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CATACCTGCATTAACCATTAAACCAGTAGCTGCAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTAAAATGCTGCTCATTCTTGGTCCATCTACTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATAAATTGGAAAAGTTTTTTTATAGTAAAACCAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCAGCAATTTTGGCTCGATCATCCCTTAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGTTGCATTCCCATGCGAACACGTTCAGCAAGGTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTAAGAAAGGGATTGATAACATGAACACACTAGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATGACGTTTTCGGATAAACATCTTTTCTGTTTCCG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGTACCAATCCCAATGGGTATTACCCTTATTGTCCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CACGATCCTGCAACTCCACCCCTTTTTGAAATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCAATAACTAAGAAAGTAGTACAATGACATCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTAGATTACGTAGAAGAACAAGAACGTCACAGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTTATGTGCTTGTTTTTAACTTTCTTCAACCCTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTATTAAAAGGGTTAAAAAACATAAACGCAAAAC
TTCACACTCCCCGCCTGTTCGCGAATTGAAAT

>NZ_CP008855|2|2|2708940-2711237|PILER-CR
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTATGCACCTTAAATATACAAACCCAGACGCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCTCCTTTCATTGTTTCTTTCTGTAAAACTTCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTGCAAATGGTGCCGACCAATCAGACGGAAAACT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTGTCTAGGATAGCTTTTAGAGACTCATCCCAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AACACCCGCTGGATTCCTTCAAACATTTCACGCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCGTCGCTCATAAACCATGCTTTAACGCTACAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTACGTACAACTTCGATTACAAACGTTTCATCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGCTGTCTTGCGCTCGCAAAGTTCTTGCATCTTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTAGGGAAACATTCTTTTACGATACTAGTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCGAAAATGATCGAGTAGTTACTGATTCCCTAACA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TATATCTTATATCCAAACATCATACACTAAAACACC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCGTTTTGAATCGAATCATACGCCAGGTTTCCGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCATTACTTTAACCGGGGAAGAATTCGGTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTTCGGTTTAATAGGGAAATTAGCAATTACCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATTGGCTTTATTTGGGCTTTTAGCCGTTGGGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTCGTATAGACGAGCGTGTATTTGGTAGCTGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAAGCCGGATATCAATGGAGAGTTGGTGGCGAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATGCGTCACCCCTTCGCTACATTTTGGAATATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTTTCATCAATCCCGCACTGAATAACATTTAGC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GGAAAAAACAAAGGAAAGACACTTAAAGAAATCTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CATACCTGCATTAACCATTAAACCAGTAGCTGCAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTAAAATGCTGCTCATTCTTGGTCCATCTACTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATAAATTGGAAAAGTTTTTTTATAGTAAAACCAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCAGCAATTTTGGCTCGATCATCCCTTAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGTTGCATTCCCATGCGAACACGTTCAGCAAGGTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTAAGAAAGGGATTGATAACATGAACACACTAGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATGACGTTTTCGGATAAACATCTTTTCTGTTTCCG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGTACCAATCCCAATGGGTATTACCCTTATTGTCCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CACGATCCTGCAACTCCACCCCTTTTTGAAATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCAATAACTAAGAAAGTAGTACAATGACATCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTAGATTACGTAGAAGAACAAGAACGTCACAGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTTATGTGCTTGTTTTTAACTTTCTTCAACCCTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT

>NZ_CP008855|2|2|2708940-2711303|CRISPRCasFinder
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTATGCACCTTAAATATACAAACCCAGACGCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCTCCTTTCATTGTTTCTTTCTGTAAAACTTCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CTGCAAATGGTGCCGACCAATCAGACGGAAAACT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTGTCTAGGATAGCTTTTAGAGACTCATCCCAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AACACCCGCTGGATTCCTTCAAACATTTCACGCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCGTCGCTCATAAACCATGCTTTAACGCTACAA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTACGTACAACTTCGATTACAAACGTTTCATCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGCTGTCTTGCGCTCGCAAAGTTCTTGCATCTTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATTAGGGAAACATTCTTTTACGATACTAGTTTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATCGAAAATGATCGAGTAGTTACTGATTCCCTAACA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TATATCTTATATCCAAACATCATACACTAAAACACC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCGTTTTGAATCGAATCATACGCCAGGTTTCCGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCATTACTTTAACCGGGGAAGAATTCGGTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTTCGGTTTAATAGGGAAATTAGCAATTACCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATTGGCTTTATTTGGGCTTTTAGCCGTTGGGG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTTCGTATAGACGAGCGTGTATTTGGTAGCTGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAAGCCGGATATCAATGGAGAGTTGGTGGCGAAT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATATGCGTCACCCCTTCGCTACATTTTGGAATATG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GTTTCATCAATCCCGCACTGAATAACATTTAGC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	GGAAAAAACAAAGGAAAGACACTTAAAGAAATCTA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CATACCTGCATTAACCATTAAACCAGTAGCTGCAG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTCTAAAATGCTGCTCATTCTTGGTCCATCTACTC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATAAATTGGAAAAGTTTTTTTATAGTAAAACCAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	AAAAGCAGCAATTTTGGCTCGATCATCCCTTAAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TGTTGCATTCCCATGCGAACACGTTCAGCAAGGTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACTAAGAAAGGGATTGATAACATGAACACACTAGA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ATGACGTTTTCGGATAAACATCTTTTCTGTTTCCG
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CGTACCAATCCCAATGGGTATTACCCTTATTGTCCAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	CACGATCCTGCAACTCCACCCCTTTTTGAAATCCA
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	ACCAATAACTAAGAAAGTAGTACAATGACATCATT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTAGATTACGTAGAAGAACAAGAACGTCACAGAC
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TCTTATGTGCTTGTTTTTAACTTTCTTCAACCCTT
GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT	TTATTAAAAGGGTTAAAAAACATAAACGCAAAAC
TTCACACTCCCCGCCTGTTCGCGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008855.1\|WP_038539859.1\|2723383_2724148_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377906
NZ_CP008855.1\|WP_038539840.1\|2712567_2712771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008855.1\|WP_038539828.1\|2703260_2704124_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NZ_CP008855.1\|WP_038539836.1\|2711377_2712496_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP008855.1\|WP_051968280.1\|2721396_2722809_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP008855.1\|WP_038539813.1\|2696562_2697663_-\|CotS-family-spore-coat-protein	unknown	unknown	gnl\|CDD\|131952
NZ_CP008855.1\|WP_038539844.1\|2713115_2716799_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP008855.1\|WP_038539833.1\|2704769_2705801_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP008855.1\|WP_038539822.1\|2700628_2701348_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP008855.1\|WP_038539851.1\|2718319_2718883_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP008855.1\|WP_081905136.1\|2695135_2696566_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP008855.1\|WP_038539854.1\|2719735_2720167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008855.1\|WP_038539848.1\|2716788_2718360_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP008855.1\|WP_038542144.1\|2718910_2719630_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP008855.1\|WP_051968278.1\|2694316_2694784_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367841
NZ_CP008855.1\|WP_038542142.1\|2705810_2706101_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP008855.1\|WP_038539857.1\|2720354_2721284_+\|glutaminase-A	unknown	unknown	gnl\|CDD\|274797
NZ_CP008855.1\|WP_038539831.1\|2704113_2704773_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_CP008855.1\|WP_038539825.1\|2701344_2703243_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP008855.1\|WP_038539818.1\|2698059_2700489_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NZ_CP008855.1\|WP_038539859.1\|2723383_2724148_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	8.82674e-45
NZ_CP008855.1\|WP_038542144.1\|2718910_2719630_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	4.94864e-105
NZ_CP008855.1\|WP_038539828.1\|2703260_2704124_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	2.38591e-133
NZ_CP008855.1\|WP_038539836.1\|2711377_2712496_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.59406e-61
NZ_CP008855.1\|WP_051968280.1\|2721396_2722809_-\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.13221e-152
NZ_CP008855.1\|WP_038539813.1\|2696562_2697663_-\|CotS-family-spore-coat-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	4.04185e-114
NZ_CP008855.1\|WP_038539844.1\|2713115_2716799_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP008855.1\|WP_038539833.1\|2704769_2705801_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP008855.1\|WP_038539822.1\|2700628_2701348_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.50679e-104
NZ_CP008855.1\|WP_038539851.1\|2718319_2718883_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	2.97169e-29
NZ_CP008855.1\|WP_081905136.1\|2695135_2696566_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.75937e-71
NZ_CP008855.1\|WP_038539848.1\|2716788_2718360_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP008855.1\|WP_051968278.1\|2694316_2694784_+\|hypothetical-protein	gnl\|CDD\|367841	pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.	2.70753e-05
NZ_CP008855.1\|WP_038542142.1\|2705810_2706101_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.72164e-33
NZ_CP008855.1\|WP_038539857.1\|2720354_2721284_+\|glutaminase-A	gnl\|CDD\|274797	TIGR03814, Glutaminase_1, glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). [Energy metabolism, Amino acids and amines].	0
NZ_CP008855.1\|WP_038539831.1\|2704113_2704773_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	5.78677e-26
NZ_CP008855.1\|WP_038539825.1\|2701344_2703243_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.48073e-177
NZ_CP008855.1\|WP_038539818.1\|2698059_2700489_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.09129e-79

>NZ_CP008855.1|WP_038542142.1|2705810_2706101_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTVSSGGKKRLRKVAKECQNYGQRVQNSVFECNLDASQFAALKFKLADIIDKNQDSLRFYQLGKNYKTKVEHIGIKESIDLDSPIIF
>NZ_CP008855.1|WP_038539833.1|2704769_2705801_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFINQSDVYLSLDGENIVLLKDQEQLGRLPLHNLESIVTFGYTGASPALMGYCAERNISLVFFTMNGRFLARVIGKSRGNVVLRKKQYRVSDDEKASVKIARNFICGKIYNNKWILERMTRDYPLRVDVTHFKEVSKHLSSILLEVRECEDLERLRGLEGQAASSYYKLFDQMILQQKEDFYFRSRSRRPPLDNVNAMLSFAYTLLANDIASALEGVGLDAYVGFLHRDRPGRASLALDVMEELRGVYVDRFVLSLINKRIVNKDDFFKKENGAVIMTEGARKKLLAAWQNRKQEKITHPFLGEKLQWGLVPHAQALLLARFLRNDLDEYPPFLWK
>NZ_CP008855.1|WP_038539831.1|2704113_2704773_+|CRISPR-associated-protein-Cas4
MDYKDEDSYLMLSGIQHFQFCKRQWALIHIEQQWEENVRTVEGQYLHQKADQPFIREKRRDKLIVRGMPVKSNELKITGICDVVEFIKDKNGVEIKGEEGKYIAYPVEYKRGKPKKNDEDILQLTAQAMCLEEMLLCEIQKGYMFYHEIKHRVEVSLTIELKNKVRSIFEEMQDYYKRRHTPKVKTGSFCGSCSLQNNCLPKIMNKRSVKSYIEGSIRD
>NZ_CP008855.1|WP_038539828.1|2703260_2704124_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTILDHKIDFAVVFSVTKANPNGDPLNGNRPRQNYDGHGEISDVAIKRKIRNRLQDMGESIFVQSNDRATDNFKSLRERAESNAALERILKSKNSSSDDFAAIACEQWIDVRSFGQVFAFKGSGNGSGVSVGVRGPVSIHIATSVNPIDITSMQITKSVNSEPGKEKGSDTMGMKHRVDFGLYVFYGSINTQLAEKTRFTSEDAEKIKQALVTLFENDASSARPDGSMEVHKVYWWEHNSKLGQYSSAKVHRSLQIKPIVENPKSFEDFSISLKELDGLKVEVIDGL
>NZ_CP008855.1|WP_038539825.1|2701344_2703243_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLFNLYQTYESNLGQVGVIEKKYNEQEYTLLPISHTTQNAHIEVEITEDGEFHSAKVVDKNDANTLIPCTESSASRSGSKIAPYPLHDKLSYVAGDFKAYGGKIKKEEPFTYYIEQLEKWAKSPYATPKVRSIFTYLAKKRLINDLVQEKILFLDANGQLIKSWDKRYEALHGEKPAIFSVIAGDQESAFVRFNVYSPDKVLTKVWKDVEMYDSFIRYYQDSLGEEDLCFVTGIRLPCTDRHANKIRNAADKAKLISANDTSGFTFRGRFNKGHEVASISYEVSQKAHNALKWLINRQGKTIDNRVFLVWGNDDLDVPDVTEDSFDLLSIGLSTNEKNEKIFYTGQDFANEVSKAIDGYRNNLSTKSNVNIIILDSATTGRLAVLYFRNLHKEQYLDRLAKWHSTCVWLHRYRKNDKGENVPFYGAPSTKDIAYAAYGPKANEKVVKGLMERMLPCIVDEKKIPLDIIKSAFYRASNPVSLEKWEWEKTLSVTCALINKQEGLDVALDNENNDRDYLFGRLLAIADVLERRALGSDETRATNAIRYMNSFSKHPARTWKTIQESLQPYQARLGTKAKYLSNLIDEVASRIQFEDFNNKSLSGKYLLGFYSQRHDLYQKREKVNVDEQPSI
>NZ_CP008855.1|WP_038539822.1|2700628_2701348_+|type-I-C-CRISPR-associated-protein-Cas5
MRNSIEFEVYGKYALFTDPLTKMGGEKLSYQVPTYQALKGIVESIYWKPTLLMVVDEVRVMNPIRMESKGVRPIEYGGGNTLAYYTYLKDVRYQVRAHFIFNPHRPDLAFDRNEHKHHNIMKRSLRAGGRRDIFLGTRECQGYVEPCVFGEGVGFYDNYGEINLGTMVHGINYPDETGRNQMEVRLWNPVMKNGVIQFIRPDQCTQIRKIKEIKAKSFDQSNVESSEVLFKQLEGEVKE
>NZ_CP008855.1|WP_038539818.1|2698059_2700489_+|CRISPR-associated-helicase/endonuclease-Cas3
MNFIAHIRESDKQIQTVEEHLLGVKELAETYGEKLGIKHLTGLAGMLHDMGKYSDEFRNYILEAVNNHNAPPKRGSVDHSTAGGKLLYELYHIGKNINPYKAILAEIVGNAIISHHSYLQDFLSPDLESNYLKRVRDKELSEYAKSKETFFKHVMNEIDFHSYVQKAAEELEKFLGKETPDNWGRQLMFLTKFIFSALIDADRTNTRLFEENKNDSSVKDYKKLFDTYYKRLMKKIESFKSHPQANNPINLLRASMSDQCDQFAENPSGIYTLSIPTGGGKTLASLRYALKHAKLYNKKRIIYVVPFTTIIEQNAEEVRKILLDDVNILEHHSNVIEDENVDDESLSGRMSVHQRLKLAKDNWDSPIIFTTMVQFLNVFYAKGSRYIRRLHNLSESVIIFDEVQKVPISCVSLFNYALNYLKEYAQSSIILCTATQPALDFVEHKLEINTEAEIIRNLEDVIEAFKRVEIVDLATKESYDNNKLADFIETKIEEVQSVLVILNTKSVVKNLYNLLKERYKGISIYHLSTSMCAAHRNTIFDEIRSKLKKGDKIICISTQLIEAGVDVSFECVIRSLAGLDSIAQAAGRCNRHGEKGIKNVYVIDHVEENLDRLNEIKIGKEISKKILIDRKRDPSTHGGNILSKQAMERYFQGYYTELNSNLNFFIRKLQREMTELLTAIKEQSSYHRAYRNREGKNLPLFLVNSYGTAGKYFHVIDNETTSVIVPYSKGKDIITELSSNGSISDLTSLLRKAQQYTINLYKNELNNLSKNGGIVSYLDGKIFALKEGAYNKEFGLNIENDSVLDSLVF
>NZ_CP008855.1|WP_038539813.1|2696562_2697663_-|CotS-family-spore-coat-protein
MAELIIEPWIVDETTHDFFVPEYIENLAHLVLKHYDLSVRNMQIITTKPDKGGAIWKLETKSGPKSLKLLHRRPTRSLFSLGAQEYLVDVQAARVPPIIKTKDGKNFVEAGGKLWFVAEWIEPLTPVTKDLEGAKQLCYALGEFHRLSKGYVPPQNAEIASRLYKWPKTYEKVLKKMDWLRNIAKVYSDMPASSHLLNGVEKFEQQAIQSINSLNQSSYYDLVQQGNAYWGLVHQDYGWSNGQMGKNGMWIIDLDGVAYDLPIRDLRKLISGTMADLMKWDTTWVREMIATYHEANPISPQLYEILMIDLSLPNEFYKNLKEAVYEPEVFLNEQTAQLIQTIIETDQSKWPVLNEIKDDWKGVKTK
>NZ_CP008855.1|WP_081905136.1|2695135_2696566_-|glycosyltransferase-family-4-protein
MKILMIGTEKLPIPPILGGAIQTYIAGTLPYLSKVHDITVLGISNSQLSDQETVNGIRYVRVPGMVFEIYKEHVVKFVEANEFDLIHIFNRPRLVLPIKNVAPNSRITLSMHNDMFNPEKISPEEATAVLEHVSQIVTVSDYVGNVIRELYPQSSAKIRTIYSGVDSERFLPGNHPKMQKRRNEIRKAHGLENKTVILFAGRLSHNKGVDRLIRALPDLSKKFKNLALVIVGSKWFSQEGISDYVAYVRALAKRLPIPVVTTGYVAQDEIQNWFAAADLFVCTSQWQEPLARVHYEAMAAGLPIVTTARGGNPEVIIEGVNGLIVKNPEDPKRFVDAISAILSDKSLIKKMGEEGRNLAVSKYRWDRVASELLKFWEDSMQSTVTELTDINTISFEQPEQVFLTKLKDKAYSQPESTPSIKSEKKKSKKDQKKLDKKSKKEQKKREEKLKKEQKKLKEKLKKDKKRKDDKRKNESA
>NZ_CP008855.1|WP_051968278.1|2694316_2694784_+|hypothetical-protein
MEKNLNNILLKEDDVFGGKLEYQNSFQTMMGSLSNDFVIKLESVSEESSDEIESADEESEDGLTESGDESTEEESEDGLTEEESGDESTEEESEDGILFEESGDESTEEESEDGVLFEESGDESTEEESEAGLFFEESGDESTEEESGDGDESSE
>NZ_CP008855.1|WP_038539836.1|2711377_2712496_+|FAD-binding-oxidoreductase
MSKIIVIGAGILGASTAYHLAKMGAEVTIVDRQDRGQATEAAAGIVCPWLSQRRNKAWYQLVKAGARYYPKLIADLIADGEKDTGYRQVGAINLHTDIDKLEQMAERARKRREDAPEIGEIHILSPDETKKLFPPLSNEYGAVFVSGGARVNGKALRNALMNAAIKHGAKLLHGNAELMRMDNCSVGVSLSGEKMAADKVVVTAGAWANELIKPLGINFLAVPQKAQIVHLELPETDTCSWPVVMPPGNQYILAFENGRIVLGSTHEDDTQFDTRVTAGGIHEILSKGLHVAPGLMNATMVETRVGFRPFTPGFLPVFGVLPGYESVLVANGLGASGLTSGPYLGAELAKLALGLQPELDLNNYDLTTAIGN
>NZ_CP008855.1|WP_038539840.1|2712567_2712771_+|hypothetical-protein
MGKDNDNIKEILENSIEIEEDLMKTYLITAERIHDDGELKERLENFAEGNAKRTKQLLDELEEMKDK
>NZ_CP008855.1|WP_038539844.1|2713115_2716799_+|nitrate-reductase-subunit-alpha
MRKKISPLIKKLTYFGRTHDIAENSALQEADREAEGYYRERWQHDKVIRTTHGVNCTGSCSWKVHVKDGIITWETQQTDYPTTGPDMPEYEPRGCQRGATFSWYIYSPIRVKYPYIRGELLRLWQEARKKHSDPVQAWKSIAEDPVKRKSYKTARGKGGYVRATWDEIYELISAQMIHTIQEYGPDRIVGFSPIPAMSMVSYASGARFINLIGGNLLSFYDWYADLPPSSPQVWGEQTDVPETSDWFNSTYLLIWGSNVPQTRTPDAHFMVESRYKGTKVVCISPDYAEFVKFADNWLPVQAGMDGALAMGMTHVILKEFYVDNQTKFFEDYVKQFTDLPYLITLSKEGDHYVAGRFLRASDIGMQTEYGDWKTIVWDQKSGKLAIPNGSMGHRWEGKGKWNLEMRDSENQVDDLDPMLTFLGNEDETGILHLPFYGLEQKEVLKRGIPIKKIDQNGQTIYVTTVFDILMAQAGVKRGNLPGDYPENYDDPKPHTPAWQEKISGIDRKLCAQIAREFAQNAVDSGGRSMIIMGAGINHWYNSDTIYRAILNLVMLCGCEGVNGGGWAHYVGQEKVRPLEGWQTIAMARDWGGPPRLQNGTSFFYFVTEQWRYDDQRPEEHLSPLYDKPRYKTMADYNALAVRLGWVASYPQFNTNSLKIYEQANASNPEEVAKYVADQVKQGNLKFSIEEPSNPINFPRTMFVWRANLIGSSSKGHEYFLKYMLGTHSAVLAEPYKELGTTEVDEKMDPPEEGKLDLMIDIDFRMTSTGLYSDIILPAATWYEKYDISSTDTHPYIHPFNPAITPPWEARSDWDNFKKLAKTFTEMAKKYFPNPVKDVVTTPLLHDTVDEISQKFGLVPDWKQDGSEPIPGQNFPRVHVVERDYTRIFDKYVALGTNTKIGAKGLAWDVKDEYNELKDILGTSTESLEYRDCPDLSHDKNVAEAILTLSSTTNGSVNQKAWVDLEKKTNQKLKHLSEERAEEHISFDEISAQPRKVITSPVFSGIETGNRRYAPFVINREYLVPFRTLTGRQHFYLDHEMMFEYGEELPVFKGPIKRLAFYDKDWKPESAKQEIRLRYLTPHFKWSYHSTYFDTLPMLTLFRGGPHIWLNLEDAKSVGINDNDWLEIYNRNGIVVARAVVSHRIPRGVTYMYHVQERTINVPGSTITKQRGGTFNSPTCLTMKPTHLIGGYAQLSYGFNYYGPTGNQRDEQVMVRRLDRSEVDWLEN
>NZ_CP008855.1|WP_038539848.1|2716788_2718360_+|nitrate-reductase-subunit-beta
MKIKAQFGMVMNLDKCIGCHTCSVTCNNTWTNRPGAEYMWWNNVETKPGVGYPKEWENQDTHKGGWELRNGKIELKAGGRLQKLLNIFYNPNMTKIDDYYEPWTYTYDHLIKSPKKEHQPVARPKSLLTGEYMDIQWGPNWEDDLAGVYETGKKDPNMNGVDAQVIQEFDQAFMMYLPRICEHCINPPCVSSCPSGAIYKRDEDGIVLIDQDACRSWRFCTTGCPYKKTYYNWKTNKAEKCTFCFPRIENGQPTVCSETCVGRLRYIGVVLYDADWVTAAASVQNEKDLYEAQLNIFLDPFDPEIIKEAKSQGIPEDWIEAAQASPVYKLAVLHKVALPLHPEYRTLPMVWYIPPLSPIINQFGGLIDNLDPKVIFPTIDQFRIPIQYLANLMSAGDTEVIRRVLRKMVAMRTFMRSYHLNKPYDEQVLESAGLTKESAIDLYELSAIAKYNDRFVIPKSHRERAGNMYEAQGSTGYDFMEVCNGCSEGEDTFDAKELYAFSEQYWRDFEIGGAMDGRKTVDF
>NZ_CP008855.1|WP_038539851.1|2718319_2718883_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MVVPWTEEKQLIFKLCSIMLRYPDQAWVKSEEMYEMISSLEDPNIKKAFLTFWDYIVQTSWEELTENYVKWFDLSESTTLHLTYGIFGDNRERGPAFVRLKLEFAKAGFYLKENELPDYLPLILEFASVAEPKFAQKVLAIHWKAITKLLEELKKEQNPYMSLVHVCVMTMEKLLPKTEQKMNHHAS
>NZ_CP008855.1|WP_038542144.1|2718910_2719630_+|respiratory-nitrate-reductase-subunit-gamma
MTYFDIFLWVVVPYISLTIFVLGHIYRYNTDQFGWSAKSSEFLHKDALLKWGSILFHYGIIFVFFGHVAGVLIPKGFYDAIGISEEMYHFGAVWFGGLAGVATVIGGFLLTVRRMTNKRVARNSAKMDLLTLLWIGVVVVIGFTNTVGYTASGGEFDYRTTIGPWFRGILTFRPYPDLMAYAPIGFQLHVFAAFILFALWPFTRLVHVWSLPLEYLTRKYVLYRKMAPRRTVREVNRRN
>NZ_CP008855.1|WP_038539854.1|2719735_2720167_-|hypothetical-protein
MSGPSLYKLDAHRSIHEGVFTEGRDLLELLLKVLHEKADNYEKHALMAAEALVEHWETRLIAHADSEEEGFYLEKVKQNPDLLEKVTWLKRDHEIFRIIVKEIRELLRAGKITEDIIDRFKAISVIGKIHNEDEETYLFDDHS
>NZ_CP008855.1|WP_038539857.1|2720354_2721284_+|glutaminase-A
MACQSNDELRALVEKARPIAKEGKVADYIPALGKANPNDLSIAIYYPDGNCISAGDIDRKITLQSISKVISLALVLMDRGPSYVFEKVGMEPTGDPFNSIAKLETTVPAKPLNPMINAGALVVTHMLKGNSVEERFQRLLSFIQELAGNQSINYCAEVARSEFETAHLNRSLCYFLKQHHIIDEDIEELMDLYTKQCAIEMTCFDLSRIGLVFAMDGVDPESGRQIMPLDVARICKTFMVTCGMYNASGEFAIKIGIPAKSGVSGGIMGAVPGRFGIGIFGPALDEKGNSIAGIKLLELLSKTYSLSMF
>NZ_CP008855.1|WP_051968280.1|2721396_2722809_-|peptide-MFS-transporter
MEATMDHQSKKHPPGLYLLFLTEMWERFSYYGMRAILILYLTKSLVSGGLGMKESTALMLYGFFTGAVYFTPLIGGYLSDRFLGQRLAVTIGGITMACGNLVLFAHQSFTAVYIGLGLLIIGNGFFKPNISTIVGELYGPKDKRRDAAFTIFYMGINTGAFFAPLVIGAITDKWFAVQANGVVEYGYKYGFLASAIGMVIGQVLFNALGNRFLGDIGKKPVGKPKVSTSGTVEKQTLTKVEKNRTAVIFILATFVVFFWAGFEQAGGALSIYTDKFIDRTIFGWEIPTSWFQSVNPLFIIILAPLVSMLWVKLSNSKRGDLAVPTKMGLGMIMLGLGFIVLLFAIMQTGSDETNITVKANILFIIFTYFFHTIGELFLSPVGLSFVSKYAPVKFSSLLMAVWMASSFVANIIAGQLGAFTESMGYFEVFSVIGVSVIVLGLILLSLSKKLVKMLGDDEKENMEEQVAKAN
>NZ_CP008855.1|WP_038539859.1|2723383_2724148_+|MerR-family-transcriptional-regulator
MEYTVQKLANLAGISTRTIRYYDEIGILKPARINSSGYRIYGQREVDRLQQILFYRELGVCLDDIKSIMTDPSFDGAKALEEHLKKLLEKRKQLDLLIANVKKTIAAKEGRIHMSDKEKFEGFKNKMLEENEKKYGKEIREKYGEEVVEKSNEKFRNMTKEQYEEVTHLEKQVTQTLAEAFKTGDPKGELAQKAADLHKKWLMYFWPEYSKEAHAGLAQMYVDDERFKAYYDKEQPGTAEFLREAILVYTGIKQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008855_2	2.33\|2711038\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2711038-2711072	35	NZ_CP035407	Bacillus subtilis strain SRCM103612 plasmid unnamed1	31204-31238	6	0.829
NZ_CP008855_2	2.6\|2709237\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709237-2709271	35	NZ_CP035021	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA	1095-1129	7	0.8
NZ_CP008855_2	2.6\|2709237\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709237-2709271	35	NZ_CP035021	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA	71900-71934	7	0.8
NZ_CP008855_2	2.7\|2709304\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709304-2709338	35	NZ_CP035021	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA	1095-1129	7	0.8
NZ_CP008855_2	2.7\|2709304\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709304-2709338	35	NZ_CP035021	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA	71900-71934	7	0.8
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MK568540	Vibrio phage ValB1 HC, complete genome	3669-3702	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	KP671755	Vibrio phage ValKK3, complete genome	56639-56672	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MT135026	Vibrio phage V09, complete genome	23716-23749	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MT612989	Vibrio phage vB_ValM_R11Z, complete genome	23368-23401	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MT612988	Vibrio phage vB_ValM_R10Z, complete genome	23380-23413	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	NC_021529	Vibrio phage nt-1, complete genome	241208-241241	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	KT919973	Vibrio phage phi-ST2, complete genome	247455-247488	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MN794232	Vibrio phage VH1_2019, complete genome	75750-75783	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	NC_005083	Vibrio phage KVP40, complete genome	75507-75540	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	JN849462	Vibriophage phi-pp2, complete genome	76873-76906	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	NC_023568	Vibrio phage VH7D, complete genome	10185-10218	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	AY283928	Bacteriophage KVP40, complete genome	75507-75540	8	0.765
NZ_CP008855_1	1.4\|2706502\|34\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706502-2706535	34	MT135025	Vibrio phage V07, complete genome	124357-124390	8	0.765
NZ_CP008855_1	1.11\|2706966\|35\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706966-2707000	35	NZ_CP048789	Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence	9763-9797	8	0.771
NZ_CP008855_1	1.15\|2707231\|33\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2707231-2707263	33	NZ_CP023738	Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence	191579-191611	8	0.758
NZ_CP008855_2	2.4\|2709105\|34\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709105-2709138	34	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	425909-425942	8	0.765
NZ_CP008855_2	2.6\|2709237\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709237-2709271	35	MK327928	Escherichia phage vB_EcoM_G2133, complete genome	163290-163324	8	0.771
NZ_CP008855_2	2.6\|2709237\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709237-2709271	35	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	126777-126811	8	0.771
NZ_CP008855_2	2.7\|2709304\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709304-2709338	35	MK327928	Escherichia phage vB_EcoM_G2133, complete genome	163290-163324	8	0.771
NZ_CP008855_2	2.7\|2709304\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709304-2709338	35	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	126777-126811	8	0.771
NZ_CP008855_2	2.26\|2710568\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2710568-2710602	35	KT878766	Staphylococcus phage P1105, complete genome	28164-28198	8	0.771
NZ_CP008855_2	2.26\|2710568\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2710568-2710602	35	NC_025460	Staphylococcus phage phiSa119, complete genome	3375-3409	8	0.771
NZ_CP008855_1	1.10\|2706901\|33\|NZ_CP008855\|PILER-CR,CRISPRCasFinder,CRT	2706901-2706933	33	MN850651	Escherichia phage moskry, complete genome	75554-75586	9	0.727
NZ_CP008855_2	2.4\|2709105\|34\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709105-2709138	34	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	240952-240985	9	0.735
NZ_CP008855_2	2.6\|2709237\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709237-2709271	35	MK504443	Lactobacillus phage 521B, complete genome	9114-9148	9	0.743
NZ_CP008855_2	2.7\|2709304\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709304-2709338	35	MK504443	Lactobacillus phage 521B, complete genome	9114-9148	9	0.743
NZ_CP008855_2	2.26\|2710568\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2710568-2710602	35	NC_007065	Staphylococcus phage X2, complete genome	30113-30147	9	0.743
NZ_CP008855_2	2.26\|2710568\|35\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2710568-2710602	35	AY954968	Bacteriophage X2, complete genome	30113-30147	9	0.743
NZ_CP008855_2	2.10\|2709503\|34\|NZ_CP008855\|CRT,PILER-CR,CRISPRCasFinder	2709503-2709536	34	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	85050-85083	10	0.706

1. spacer 2.33|2711038|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035407 (Bacillus subtilis strain SRCM103612 plasmid unnamed1) position: , mismatch: 6, identity: 0.829

accaataactaagaaagtagtacaatgacatcatt-	CRISPR spacer
accaatcgctaagaaagtagtacaatggt-tcatat	Protospacer
****** .*******************.. ****

2. spacer 2.6|2709237|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035021 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA) position: , mismatch: 7, identity: 0.8

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ttagttccctttcttattttaatttttttatttct	Protospacer
 * . ************** ** ***********.

3. spacer 2.6|2709237|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035021 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA) position: , mismatch: 7, identity: 0.8

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ttagttccctttcttattttaatttttttatttct	Protospacer
 * . ************** ** ***********.

4. spacer 2.7|2709304|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035021 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA) position: , mismatch: 7, identity: 0.8

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ttagttccctttcttattttaatttttttatttct	Protospacer
 * . ************** ** ***********.

5. spacer 2.7|2709304|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035021 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pA) position: , mismatch: 7, identity: 0.8

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ttagttccctttcttattttaatttttttatttct	Protospacer
 * . ************** ** ***********.

6. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MK568540 (Vibrio phage ValB1 HC, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

7. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to KP671755 (Vibrio phage ValKK3, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

8. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MT135026 (Vibrio phage V09, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

9. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MT612989 (Vibrio phage vB_ValM_R11Z, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

10. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MT612988 (Vibrio phage vB_ValM_R10Z, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

11. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to NC_021529 (Vibrio phage nt-1, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

12. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to KT919973 (Vibrio phage phi-ST2, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

13. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MN794232 (Vibrio phage VH1_2019, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

14. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to NC_005083 (Vibrio phage KVP40, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

15. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to JN849462 (Vibriophage phi-pp2, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

16. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to NC_023568 (Vibrio phage VH7D, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

17. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to AY283928 (Bacteriophage KVP40, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

18. spacer 1.4|2706502|34|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MT135025 (Vibrio phage V07, complete genome) position: , mismatch: 8, identity: 0.765

cctcctatttgttgatcgctgatatatgggcatt	CRISPR spacer
actcctatttgttgatcgctgttttatcagcgca	Protospacer
 ******************** * *** .**..

19. spacer 1.11|2706966|35|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048789 (Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.771

acgccgtccggccattcgacctgccgcaacgctac	CRISPR spacer
aggcctgagagccattcgacctgccacaacgccac	Protospacer
* ***    .***************.******.**

20. spacer 1.15|2707231|33|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023738 (Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence) position: , mismatch: 8, identity: 0.758

atcagtctcgcccgcctgagtgattgcaaaaat	CRISPR spacer
atcgacctcgcccgcgtgagcgattgcaaattg	Protospacer
***...********* ****.*********

21. spacer 2.4|2709105|34|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 8, identity: 0.765

ctgcaaatggtgccgaccaatcagacggaaaact	CRISPR spacer
ccgccgatggtgccgaccaatcggccggaacgcg	Protospacer
*.** .****************.* ***** .*

22. spacer 2.6|2709237|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to MK327928 (Escherichia phage vB_EcoM_G2133, complete genome) position: , mismatch: 8, identity: 0.771

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ggctctcccttttttatttaaaatttttttttcac	Protospacer
. *  *******.**************** **. *

23. spacer 2.6|2709237|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.771

--atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ggtttaa--actttcatatttaaaagtttttatttca	Protospacer
   *.**   ***** ********* **********

24. spacer 2.7|2709304|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to MK327928 (Escherichia phage vB_EcoM_G2133, complete genome) position: , mismatch: 8, identity: 0.771

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ggctctcccttttttatttaaaatttttttttcac	Protospacer
. *  *******.**************** **. *

25. spacer 2.7|2709304|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.771

--atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
ggtttaa--actttcatatttaaaagtttttatttca	Protospacer
   *.**   ***** ********* **********

26. spacer 2.26|2710568|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to KT878766 (Staphylococcus phage P1105, complete genome) position: , mismatch: 8, identity: 0.771

ataaattggaaaagtttttttatagtaaaaccaac	CRISPR spacer
gttaattggaaaagttattttatagttaaaggaga	Protospacer
.* ************* ********* ***  *.

27. spacer 2.26|2710568|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NC_025460 (Staphylococcus phage phiSa119, complete genome) position: , mismatch: 8, identity: 0.771

ataaattggaaaagtttttttatagtaaaaccaac	CRISPR spacer
gttaattggaaaagttattttatagttaaaggaga	Protospacer
.* ************* ********* ***  *.

28. spacer 1.10|2706901|33|NZ_CP008855|PILER-CR,CRISPRCasFinder,CRT matches to MN850651 (Escherichia phage moskry, complete genome) position: , mismatch: 9, identity: 0.727

cccacatatcatcaccgtcctataagtaataaa	CRISPR spacer
taaggtgatcaccaccctcctataagtaataaa	Protospacer
.  .   ****.**** ****************

29. spacer 2.4|2709105|34|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcaaatggtgccgaccaatcagacggaaaact	CRISPR spacer
ccgccgatggtgccgaccaatcggccggaacggg	Protospacer
*.** .****************.* ***** .

30. spacer 2.6|2709237|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.743

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
tttaatccctttcttatttagaatttctttgattt	Protospacer
 *.*****************.*****.**   *..

31. spacer 2.7|2709304|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.743

atcaatccctttcttatttaaaattttttatttcc	CRISPR spacer
tttaatccctttcttatttagaatttctttgattt	Protospacer
 *.*****************.*****.**   *..

32. spacer 2.26|2710568|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NC_007065 (Staphylococcus phage X2, complete genome) position: , mismatch: 9, identity: 0.743

ataaattggaaaagtttttttatagtaaaaccaac	CRISPR spacer
gttagttggaaaagttattttatagttaaaggaga	Protospacer
.* *.*********** ********* ***  *.

33. spacer 2.26|2710568|35|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to AY954968 (Bacteriophage X2, complete genome) position: , mismatch: 9, identity: 0.743

ataaattggaaaagtttttttatagtaaaaccaac	CRISPR spacer
gttagttggaaaagttattttatagttaaaggaga	Protospacer
.* *.*********** ********* ***  *.

34. spacer 2.10|2709503|34|NZ_CP008855|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttacgtacaacttcgattacaaacgtttcatcac	CRISPR spacer
ttacgtacaagttcgattaaaaacagacgctggc	Protospacer
********** ******** ****.  .  * .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5696 : 15109

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038534885.1\|5696_7415_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-60	30.2
WP_038534887.1\|7770_7971_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.3e-18	64.6
WP_038534889.1\|8026_8269_-	hypothetical protein	NA	NA	NA	NA
WP_038534892.1\|8588_9056_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_038534893.1\|9402_10062_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-41	48.5
WP_081905004.1\|10098_10728_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.0e-64	60.5
WP_038534894.1\|10766_11234_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.4e-42	56.3
WP_038534895.1\|11654_12614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038534896.1\|12579_13638_+	iron ABC transporter permease	NA	NA	NA	NA
WP_038541571.1\|13642_15109_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	6.7e-19	30.8

DBSCAN-SWA_2

1630415 : 1674661

Bacillus_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144243006.1\|1630415_1632668_+\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
WP_038537532.1\|1632881_1633103_+	hypothetical protein	NA	NA	NA	NA
WP_038537534.1\|1633215_1634475_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_038537536.1\|1634666_1634936_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_038537539.1\|1634949_1637061_-	BglG family transcription antiterminator	NA	NA	NA	NA
WP_051968223.1\|1637549_1638068_+	hypothetical protein	NA	NA	NA	NA
WP_038537541.1\|1638151_1639030_+	hypothetical protein	NA	NA	NA	NA
WP_038537544.1\|1639034_1639640_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.5e-17	29.0
WP_038537548.1\|1639632_1640826_+	ABC transporter permease	NA	NA	NA	NA
WP_038538187.1\|1640938_1642300_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	9.3e-124	52.5
WP_038537550.1\|1642673_1643153_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_038537552.1\|1643615_1644086_+	hypothetical protein	NA	NA	NA	NA
WP_038537554.1\|1644298_1644520_-	hypothetical protein	NA	NA	NA	NA
WP_038537556.1\|1645134_1645860_-	lactate utilization protein C	NA	NA	NA	NA
WP_038537558.1\|1645862_1647290_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_038537560.1\|1647317_1648034_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_038537562.1\|1648278_1649007_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_038537564.1\|1649350_1651057_+	lactate permease LctP family transporter	NA	NA	NA	NA
WP_038537566.1\|1651264_1652677_+	glycolate oxidase subunit GlcD	NA	NA	NA	NA
WP_038537569.1\|1652673_1654002_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_038537571.1\|1654529_1654772_+	glutaredoxin family protein	NA	NA	NA	NA
WP_038537574.1\|1654845_1655778_+	S8 family peptidase	A0A127AWU5	Bacillus_phage	4.0e-70	49.0
WP_038537577.1\|1655867_1656125_+	hypothetical protein	NA	NA	NA	NA
WP_038537579.1\|1656264_1657047_-	hypothetical protein	NA	NA	NA	NA
WP_158332809.1\|1657142_1657313_-	hypothetical protein	NA	NA	NA	NA
WP_038537582.1\|1657598_1658189_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_038541957.1\|1658544_1658775_+	hypothetical protein	NA	NA	NA	NA
WP_038537586.1\|1660197_1660416_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_038537588.1\|1660454_1660673_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_038537591.1\|1660896_1661853_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_038537593.1\|1661962_1663909_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_158332810.1\|1664015_1665935_-	PRD domain-containing protein	NA	NA	NA	NA
WP_038537599.1\|1666204_1667083_-	ROK family protein	NA	NA	NA	NA
WP_038537601.1\|1667645_1667930_+	DUF2651 family protein	NA	NA	NA	NA
WP_038537603.1\|1667954_1668965_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_038536220.1\|1670741_1671302_-	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	1.2e-08	31.5
WP_051968224.1\|1671463_1671991_+\|transposase	transposase	Q9MBP7	Staphylococcus_prophage	1.2e-23	39.6
WP_038537606.1\|1672762_1674256_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_038537608.1\|1674409_1674661_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2230571 : 2240477

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038538843.1\|2230571_2231870_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.5e-19	27.0
WP_038538846.1\|2232090_2232804_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	4.8e-47	44.1
WP_038538849.1\|2232796_2233051_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_038538851.1\|2233047_2233731_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_038538854.1\|2233714_2235940_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-169	42.8
WP_038538858.1\|2235915_2237325_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	6.4e-51	30.5
WP_038538860.1\|2237330_2238365_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	3.3e-65	45.7
WP_038538863.1\|2238361_2238964_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.1e-23	34.8
WP_038538866.1\|2238938_2240477_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.4e-75	50.6

DBSCAN-SWA_4

2749047 : 2805743

Bacillus_phage(33.33%)

transposase,integrase,tRNA

attL 2782138:2782195|attR 2793468:2793525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038538187.1\|2749047_2750409_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	9.3e-124	52.5
WP_038539917.1\|2750560_2752045_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_038539920.1\|2752041_2752245_-	DUF3311 domain-containing protein	NA	NA	NA	NA
WP_038539923.1\|2752736_2753405_-	SDR family oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	6.6e-14	30.6
WP_038539926.1\|2753477_2753816_+	YfhH family protein	NA	NA	NA	NA
WP_038539929.1\|2753874_2754030_-	small, acid-soluble spore protein K	NA	NA	NA	NA
WP_038539932.1\|2754161_2754428_+	hypothetical protein	NA	NA	NA	NA
WP_038539934.1\|2754471_2755452_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_038539936.1\|2755614_2756721_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_038539939.1\|2756758_2756950_-	hypothetical protein	NA	NA	NA	NA
WP_038539942.1\|2757065_2757815_+	enoyl-[acyl-carrier-protein] reductase FabL	NA	NA	NA	NA
WP_038539947.1\|2757889_2758102_+	gamma-type small acid-soluble spore protein	NA	NA	NA	NA
WP_038539950.1\|2758269_2758527_+	hypothetical protein	NA	NA	NA	NA
WP_038539952.1\|2758689_2759220_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_038539954.1\|2759411_2761181_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-52	30.2
WP_038539956.1\|2761356_2762427_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_038542151.1\|2762624_2767094_-	glutamate synthase	NA	NA	NA	NA
WP_144242985.1\|2767391_2768693_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_038539961.1\|2768855_2769869_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	2.2e-21	29.7
WP_038539964.1\|2769861_2770653_+	daunorubicin ABC transporter permease	NA	NA	NA	NA
WP_038539966.1\|2770659_2771445_+	ABC transporter permease	NA	NA	NA	NA
WP_051968357.1\|2771600_2771951_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_038539972.1\|2772033_2772501_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_038539974.1\|2772789_2773341_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_038539977.1\|2773448_2773901_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_038539980.1\|2774204_2774555_-	YgzB family protein	NA	NA	NA	NA
WP_038539983.1\|2774706_2775582_+	hypothetical protein	NA	NA	NA	NA
2782138:2782195	attL	NA	NA	NA	NA
WP_038539986.1\|2782325_2783285_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.6e-75	49.3
WP_038539988.1\|2783478_2784249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038539991.1\|2784698_2785046_+	hypothetical protein	NA	NA	NA	NA
WP_038539994.1\|2785396_2785960_+	recombinase family protein	A0A1J1J8Z4	Escherichia_phage	2.7e-45	52.2
WP_038539996.1\|2786327_2786531_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038539999.1\|2786686_2786881_+	hypothetical protein	NA	NA	NA	NA
WP_038540002.1\|2786877_2788005_+	DNA translocase FtsK	A0A1B1P7T5	Bacillus_phage	8.9e-64	38.8
WP_038540005.1\|2787997_2788627_+	hypothetical protein	Q0H249	Geobacillus_phage	4.4e-52	51.5
WP_038540008.1\|2788623_2788845_-	helix-turn-helix transcriptional regulator	A0A076G7N2	Bacillus_phage	1.0e-11	52.2
WP_038540010.1\|2788994_2789180_+	hypothetical protein	NA	NA	NA	NA
WP_038540013.1\|2789505_2789712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038540016.1\|2789725_2790217_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081905138.1\|2790468_2790921_+	hypothetical protein	NA	NA	NA	NA
WP_038540018.1\|2791007_2791223_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038540021.1\|2791268_2791877_+	hypothetical protein	A6M961	Geobacillus_virus	1.9e-07	38.0
WP_158332817.1\|2792499_2792673_+	hypothetical protein	NA	NA	NA	NA
WP_038540027.1\|2792673_2793210_+	hypothetical protein	Q331Y6	Clostridium_botulinum_C_phage	3.3e-08	36.1
WP_038537718.1\|2794045_2795260_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
2793468:2793525	attR	NA	NA	NA	NA
WP_038540030.1\|2795308_2796031_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.8e-32	39.1
WP_038540033.1\|2796030_2797539_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_051968282.1\|2797702_2798434_+	hypothetical protein	NA	NA	NA	NA
WP_038540036.1\|2798586_2799024_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	8.9e-12	33.6
WP_038540042.1\|2799742_2799991_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_038540045.1\|2800311_2800584_+	DUF4190 domain-containing protein	NA	NA	NA	NA
WP_038540048.1\|2801095_2801767_-\|tRNA	tRNA synthetase subunit beta	NA	NA	NA	NA
WP_038540051.1\|2801873_2803019_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_051968283.1\|2803062_2804355_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.8e-28	34.3
WP_087946637.1\|2804626_2805743_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-103	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008855

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection