CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP003425	Serratia sp. SCBI plasmid SCBI_Pl, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP003424	Serratia sp. SCBI, complete genome	1 crisprs	DEDDh,DinG,csa3,cas3,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003424_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003424_1

350762-350844

Orphan

Consensus_repeat	Method
CCGCCATCAACGCCAAGACCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003424_1

>merge|NZ_CP003424|1|350762-350844|CRISPRCasFinder
CCGCCATCAACGCCAAGACCGGCACGCTGTTCTTCGGCAACACCGTCAATAACTCGGTGACCGCCATCGACGCCAAGACCGGC

>NZ_CP003424|1|1|350762-350844|CRISPRCasFinder
CCGCCATCAACGCCAAGACCGGC	ACGCTGTTCTTCGGCAACACCGTCAATAACTCGGTGA
CCGCCATCGACGCCAAGACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003424.1\|WP_042783483.1\|333117_336018_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|380463
NZ_CP003424.1\|WP_042783492.1\|353899_354643_-\|CadC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP003424.1\|WP_042783489.1\|351662_352283_+\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|182124
NZ_CP003424.1\|WP_033644173.1\|340870_341077_+\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081
NZ_CP003424.1\|WP_080273360.1\|339516_340896_+\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NZ_CP003424.1\|WP_042783494.1\|355693_356236_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP003424.1\|WP_033641590.1\|349556_350417_+\|isochorismatase	unknown	unknown	gnl\|CDD\|238495
NZ_CP003424.1\|WP_042783485.1\|341109_345054_+\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
NZ_CP003424.1\|WP_042783496.1\|360198_360537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367583
NZ_CP003424.1\|WP_042783491.1\|352555_353344_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP003424.1\|WP_139375474.1\|358837_359593_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185185
NZ_CP003424.1\|WP_084587944.1\|353364_353817_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003424.1\|WP_042783495.1\|356282_358823_+\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185184
NZ_CP003424.1\|WP_042783486.1\|345230_346499_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP003424.1\|WP_042783487.1\|347924_349553_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP003424.1\|WP_042783484.1\|337518_339234_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NZ_CP003424.1\|WP_049866641.1\|346711_347917_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|184977
NZ_CP003424.1\|WP_156965079.1\|359734_360148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003424.1\|WP_042783493.1\|355058_355601_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP003424.1\|WP_033641583.1\|336065_337298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225926

Protein	Function_ID	Function_description	E-value
NZ_CP003424.1\|WP_042783483.1\|333117_336018_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|380463	cd19540, LCL_NRPS-like, LCL-type Condensation domain of nonribosomal peptide synthetases (NRPSs) and similar domains. LCL-type Condensation (C) domains catalyze peptide bond formation between two L-amino acids, ((L)C(L)). C-domains of NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). In addition to the LCL-type, there are various subtypes of C-domains such as the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. An HHxx[SAG]DGxSx(6)[ED] motif is characteristic of LCL-type C-domains.	4.35812e-59
NZ_CP003424.1\|WP_042783492.1\|353899_354643_-\|CadC-family-transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	2.60344e-13
NZ_CP003424.1\|WP_042783489.1\|351662_352283_+\|DUF2238-domain-containing-protein	gnl\|CDD\|182124	PRK09867, PRK09867, hypothetical protein; Provisional.	1.90281e-113
NZ_CP003424.1\|WP_033644173.1\|340870_341077_+\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	6.4782e-21
NZ_CP003424.1\|WP_080273360.1\|339516_340896_+\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NZ_CP003424.1\|WP_042783494.1\|355693_356236_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	3.64099e-16
NZ_CP003424.1\|WP_033641590.1\|349556_350417_+\|isochorismatase	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	6.78316e-126
NZ_CP003424.1\|WP_042783485.1\|341109_345054_+\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NZ_CP003424.1\|WP_042783496.1\|360198_360537_+\|hypothetical-protein	gnl\|CDD\|367583	pfam03628, PapG_C, PapG chaperone-binding domain. PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus and chaperone binding C-terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD.	1.29924e-05
NZ_CP003424.1\|WP_042783491.1\|352555_353344_+\|membrane-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	1.89291e-16
NZ_CP003424.1\|WP_139375474.1\|358837_359593_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185185	PRK15285, PRK15285, fimbrial chaperone StfD.	1.00448e-82
NZ_CP003424.1\|WP_042783495.1\|356282_358823_+\|outer-membrane-usher-protein	gnl\|CDD\|185184	PRK15284, PRK15284, putative fimbrial outer membrane usher protein StfC; Provisional.	0
NZ_CP003424.1\|WP_042783486.1\|345230_346499_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP003424.1\|WP_042783487.1\|347924_349553_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP003424.1\|WP_042783484.1\|337518_339234_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NZ_CP003424.1\|WP_049866641.1\|346711_347917_+\|isochorismate-synthase	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	9.2399e-175
NZ_CP003424.1\|WP_042783493.1\|355058_355601_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.07102e-27
NZ_CP003424.1\|WP_033641583.1\|336065_337298_+\|hypothetical-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.73187e-05

>NZ_CP003424.1|WP_033641590.1|349556_350417_+|isochorismatase
MAIPKLNDYALPTADELPQNKVTWQVEPQRAALLIHDMQQYFLNFWGEDSALIKQVVENIANLRRYCKQQGIPVFYTAQPNQQSDEDRALLNDMWGPGLNKHPEQQAVTAALAPDEDDTVLVKWRYSAFHRSPLQEILQESGRDQLIICGVYAHIGCLTTAIDAFMRNIQPFMVADGLADFSRDEHLMALRYTAGRCGRVVTTASLLPATGIASIDALRQQILPLLDEDSEDMGNDENLIDYGLDSVRIMELATRWRKIRGDIDFIALARNPTIDSWWALLSEEKA
>NZ_CP003424.1|WP_042783487.1|347924_349553_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MSIAFTPWPAEFASRYRERGYWIDKPLTEILDRQTNNDAPAIIDAQGSLTYRELQQRSDRLAAALLRRGVKSGDTALVQLGNVAEFYIVFFALLKIGVAPVNALFSHQRSELNAYAEQIKPALLIADRRHALFADDQFLNAFRDAHPSLRAVALRSQPEGELALAAWLEEASDGFVAQPSAADRVAFFQLSGGSTGTPKLIPRTHNDYYYSIRRSVEICRFDAQTRYLCALPVAHNYPMSSPGVLGVFYGAGLVVFAADPDAAQCFRLIEQHQINVTALVPPAVTLWLQAIEEWGGNAQLASLKLLQVGGAKLGETLAARIQNEIGCQLQQVFGMAEGLVNYTRLDDDERHILTTQGRPMSPDDEVWVADDDGNPLPAGEIGRLMTRGPYTFRGYYQSPAHNADAFDADGFYCSGDLISISEDGYITVQGRQKDQINRGGEKIAAEEIENLLLRHSDVINAALVSMPDALMGEKSCAYIIANAPLKPVVLRRHLREQGVADFKLPDRFIQVDSLPLTPVGKVDKKRLREQLDAQLQTQAQGD
>NZ_CP003424.1|WP_049866641.1|346711_347917_+|isochorismate-synthase
MVTAVNDINRKEMQEREEHRFAADFSPASGFFFTSPYRSLSTTGCFSRIRLPAADGADLNGEFQRRVRQAFAEARQAGIKKPLLCGAIPFDTRQPSALFVPQQSRWFDRAAFMAGVRPSANGPELAGVTELPPQQTFMNMVSDAVAAMKAGELDKVVLSRLLEIETRQPVDRHALMARVIAQNPHGFHFHVPLEQGALLGASPELLLRQDGGRFYSNPLAGSARREADPQRDREVGERLMASAKDRHEHRIVTESMRDVLAGRCRYLNVPHTPELLTTTTLWHLSTPIDGEAASPDENALSLACLLHPTPALCGMPTAEAHALIGKLEPFDRGLFGGIVGWCDDEGNGEWVVTIRCGTVDGNRVRLFAGAGIVEDSSPESEWHETGTKLSTILRAFGMNQG
>NZ_CP003424.1|WP_042783486.1|345230_346499_+|enterobactin-transporter-EntS
MSSKPSILLDFSLLKTHRAFRAVFCARFISIVALGLMAIAIPVQIQALTGSTLQVGLAVTLAGGGMFAGLLMGGVLADRYERRRLILFARSTCGIGFVGLCLNALLPSPSLAAIYLLAVWDGFFGAVGVTALLAATPALVGRENIVQAGAISMLTVRFGSILSPAIGGLVIAHMGIAWNYGLAAFGTLLTLLPLLSLPQLMPPPQPREHPLRALAGGFAFLFQNKVIGMVALIGALLTMASAVRVLYPAMAESWRIDAAHLGYMYAAVPLGATIGAFTSGRVAHVARPGWVMLLTAIAAFASIGLFGLMPWYSLALLCLVAFGYLSALNSLLQYGLIQGLTPDNFLGRINGLWTAQNVVGDALGALLLGAMGAFMLPAMSASGFGFGAALLGILLLFAMTGLRQVTLHKPEPQNEPQPASEK
>NZ_CP003424.1|WP_042783485.1|341109_345054_+|enterobactin-synthase-subunit-F
MSHTPNSLSGPALAGEWPLVAAQPGIWVADQISPHRNAYAVAHAIELNGPVAVEPLLRAITQGLGEVDMLRLRFAERDGVPVQWLDDSLAVHAPELVDLTTSPDPEAAARALMDIDLASDLRAGSGVPLYRHVVMRLADDCWFWYQRYHHLLVDGFSFTAIARRVAAIYTHLCRGDALEPTPFTAFSDVVAEYQAYRQAPAWQRDADFWREKARQLPPPATICPQPLAGQTPTPRIHRLEQRCDPQAFAELVQRGAQQKLNAADMAVALVALWVSRLSGQPSFSAGFIFMRRTGSAALCAAGPVINVLPMEMHLEPQATLYEAAARISRELKTVRRHQRYDAEQVQRDLGRIGDGEPLYGTVFNFKMFDYQLDFAGIEGITHDLASGPVRDLEIALFIDEHHQLKVELLANAERYSCQELQAHLQRLPLLLAQFAAQATLPIGEADMLTADDRALLARINDTAHPVPATTLSQLLAQQAQATPDAPALADAHFSFTYRETREQVTALARQLVAQGVRPGDIVAVALPRSVFLSLALMAIVEAGAAYLPLDTGYPDERLAMMLEDAAPRLIITHPTQQARFADKGDMLLYDAPLAADHAAGVAIAGPTPDHAAYIIFTSGSTGRPKGVLVGHQAIVNRLLWMQHQYPLGADDAVLQKTPCSFDVSVWEFFWPLMVGARLVMAPPEAHRDPQQLQQLIAQHRITTMHFVPSMLAAFVAALDDDAAVASCAALRQVFCSGEALPAELCRLWQSRTAVPLHNLYGPTEAAVDVTWHPAYGEALAKVTGANVPIGLPVWNTGLRILDARLRPVPPGVAGDLYLTGVQLAHGYLGRPDLTASRFVADPFGEGGRMYRTGDVARWLPDGAVEYLGRSDDQLKIRGQRIELSEIDHALLSLPGVRQAVTHARVLQGTPVDAGGDARQLVGYLVMQPGASWDAEALRAALADRLPPHMVPAALVEMRDLPLSANGKLDRKALPQPQGGERKAGRPPQAGLESEIAAVFARLLQREQVFADDDFFALGGHSLLAMRLAAELRRDLGKAVSVGQVMVASRVEQLAALLAEDRTQEEADRSGFDSVLPLRVTEGPTLFCLHPASGFSWQFSVLPRYLDQHWSLVGIQSPRPDGPLALSEDMDQVVEAHLQTVLQVQPHGPYHFIGYSLGGTLAQGIAARLQARGEQVAFLGLLDTYPAETQNWDVMLDDNVLKEVQREREQFLAVSQDTLDPALGETRTLMFDNIEANYADSVRLLSHTRTARFHGQATLFVAKRTLQAGMDVQQTWSQYVDALQAHELDCAHVDIVSPASFKVLGPLLNRILRTL
>NZ_CP003424.1|WP_033644173.1|340870_341077_+|MbtH-family-protein
MESLNPFDDQQQRSLVLRNVQQQYSLWPDFRAIPPDWTIVFGPAARTECAEWLEQHWQDILPVAARKA
>NZ_CP003424.1|WP_080273360.1|339516_340896_+|enterochelin-esterase
MNTELESESSRLLASSNAGSPGWWLTVARRGTPWVEPAGNGRWRTTFFWRDPQGCELTSAYRRVWININCLTDHHQPNPPQSLLRLAGTDVWYWQTELNGAWRGSYCFIPCFDERPPAFSDDDAHANMHNLRHWWHQVFACATPDLLNPYRSWQSASGHSVSGLHMPDAPPQPVWRSFDEYEIASGRCTPPLPARLQRHTWQSERLGNSRDVWIYTTGDSKPAERPLAILLDGQFWAKQMPVWAPLMQLTREGALPEAVYVLIDIIDLPHRARELTCKDDFWLAVQEELMPQLAEWAPHSDNPAETVVAGQSFGGLASLYAGLRWPQRFGAVITQSGSYWWPRRDMLQLPSIPDDACWLMQQVERHGLGNHGALKVFMEAGTQEKLVHQVSGQMAARLSEAGHRVHYRVVEGGHDALCWRSGLTDGLQAVWASAFATAYPASVTTAAQGTQDGKPESVR
>NZ_CP003424.1|WP_042783484.1|337518_339234_-|TonB-dependent-siderophore-receptor
MKSKLSRYSLATLIGLGLGASAFANAAQQTDTPTTEENSGAADKKPRGEDTIVVTAARQNLQAPGVSTITADEIKKRPPARDISELIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPASSRNSVRQGWRGERDSRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKAGDALHGSLNGYFNVPQHKQEGATKRTDFSLSGPLSDSLSFRLFGGYSKTQADAWDINESHKSERVGAYANSVPAGREGVVDKNIDALLHWDFAHLQSLEFEYAYGRQGNLYAGDTQNTNTNALVQSNYGKETNRIYRETFGLTHRGAWDNGVSTNNYVQFERTRNTRLNEGLAGGTEGIFDTKNTGFGTTKLDDFLAHSEVSVPFELGVAQTATLGTEWSQQRMKDGTSTSQTLMGGTIPGMTTGTRSPYASAHIFSLFAEDNIELTDTTMLTPGLRYDLHSESGNNWSPALNLSQELGDYFTLKMGIARSYKAPTLFQTNGNYLLYSKGQGCAGSDTRNGCYLLGNAQNVGDPNTGAINIAGAGAATYNEPGRTYYMSINTHF
>NZ_CP003424.1|WP_033641583.1|336065_337298_+|hypothetical-protein
MSGTLATPRALLSLLVAASLVVAGAAQADDAGIKPQDIKRQALSSAVVEMAYSTSQQALFVSAPDWKEEARSRVLRLDPNTLAIKAEIPLKVKGFGVALNDAGNRLYLTQAFNGEVGVVDTTTNHALDSIKLLDKAVLEQAYKQAGISGKRLDFLLAELKKFKITEDYLYRIREIKYDAQSGRLFLPGLGFGVDSVLYVVDTKAGKLEKVIPGFGYNAVGITLDEKGRRVFVSNMQGQVITLNADTLAIAATHEVQADQLLNLVYDPASNRLLGVDQGIDRDDYRNHHLGRDYVKRSSGHRVFALDADSGKVLASELTDEVPIGLLLDERSQRLYVANRKGVRVDHGAGTLTVFDAKTLKRLQTVDLPPHPNSLALDPKGDALFVTVKNDGAATKAGKAESVVRIQLHTK
>NZ_CP003424.1|WP_042783483.1|333117_336018_+|non-ribosomal-peptide-synthetase
MIGDFDSILSDEEAQRLESAFQALGAGAANGERPVSEAEERAWFAHLQQGDARGQRALAWRLTGEVDIAQLTAALQALVRETPGVNVHYVFDDENGLIKRAADSAPLPVSLRQVADEQHAMDCLLQAQAAPFELEGEAPLRFLLLLTPGGDVMLGAVLHDILAETLPWRHLPAMLSARYNGDAMPLPFAAEPAEPAEIPEPQLPWRRQAVSLQDYRSPAQRAEALPPVGERVVTRIARSLLPANDAPRALLAAVAARFAEFIAAQAGGQAVQLCVPTAETAECIGLELGLTAVPLMRLTVLHGEGDIGQRLLAQTVAEQPDPQRAQLLVAWRDDLAADWRMEGVHAERLLLPPLHTPFELALLLGLPEAETLTLELATDPRLSPHAAPFLLEQFSAFLAGQRITVALPAASPAMAAPAANGDADESVAPLILQAFREALAAPEMTLDEDFFDRGGHSLVATRVIGRLLSLHQIEININDLFSHPTARGLAGYAKRLNVAQPNAAPTTADDHDRAQAPLSLAQESLWKVYEAFGHDEIFNLPFSLRFFDEVDETALRQAFIDVMTRHTVLRSRFVEQQGEVAQVVVPAAELSDYQWFRFSQETPAGNAAALLADAGQHRFDLAAELPLRVTLLRDADNGQQLLSLLFHHVVLDEWSLNLMMDELGVAYRHRVVGQAPQWSGQPPQFHTFARQQRASGVQQQHLDYWLDALRGAPVGQPIFRQEPSTHPAVPAPADVNGGWLEFEVDPAVAEGLYQLARRNNASLFNVVYAGITSALRLLGGPADLLVGTSTSGRNDAEFFDTVGYFTTVVVHRVRFDEGLTVAGLVSQVKNTINGSLPYTDIPIDLVEEGLFGVDADRKNHMFEVFIQIHSRIKLNGEFRLQDGRAIAYRQVEPEKAESLLGLQFEVMEDDLAGKKSLRVMMTYRQDHYSREQATLIADGVQHVFTQFAQHIAGDIALAALPPGPQA
>NZ_CP003424.1|WP_042783489.1|351662_352283_+|DUF2238-domain-containing-protein
MPASCTPRLLSVITLLLLAALIHSGISPYDRTTWLMEVAPVLIVLPLLWLTHRRYPLTPLLYRLIFFHALILIFGGMYSYARVPLGFEVQQWLDLGRNPYDKLGHFFQGLVPALAAREILLRGGYVRGRKMLGFVVCCIALAISAVYELIEWWAALALGQGADEFLGTQGDPWDTQSDMFCALLGAIAGQWLFGGWQDRQLRRLKA
>NZ_CP003424.1|WP_042783491.1|352555_353344_+|membrane-protein
MRYIINNKIKYHEDRSELVDLNAELPPQPLTATLNRLLSALVRNNNLVVSRDTLLTQVWEAHGQVASGNNLNNTISILRKMFAAMGEDDIIVTLPRQGFMFTAASLKTTDSLAESLPEMPILAAADNPLPTRPLRVQRFKRFGLAALLLLAAGSGILAWQETGYPSASLMTVGKIGSCNVQFVTSYHNVGPGEIDLNHLKNMLQEKKTATCGEPATLLYYDSQALVPNASGRVRASYFYYCPQEAMTSGKVQCENYYESRGL
>NZ_CP003424.1|WP_084587944.1|353364_353817_+|hypothetical-protein
MRLPRRWPCWYAAFLLIFYFFKPQIPECTAVERFVNQYEGKMLERTLLISVVPDGVRHATILFNGSVFYDGKRYIIERSMGVDYRKWGGNYEFQVRENIRKPQDTLQDEALNRSLPIEGQTIHLRIERMDARHYLFVDNHAPYYVCVTSS
>NZ_CP003424.1|WP_042783492.1|353899_354643_-|CadC-family-transcriptional-regulator
MIFIINEDILFNEDEGTLSHIDNASNKIALLKPTGRLLSLFIRNNDKLLLRERLLNDVWVEHGLKASNNNLNNYVSGLRKSLAQFGVEDIIVTYPRQGFKFNAASIQQMDIKASDINNNDYSETEIASTPPPARTPNFRRSVQRLIMIMAACLVPFAAIVLYQNSTRISVYPLGNEQNCQIYTMRLGSGELANIKREIRQAGFDCQYRADVYYYDNIRNENAEKDEQWLTYCPRASNSPCINNYIKK
>NZ_CP003424.1|WP_042783493.1|355058_355601_+|type-1-fimbrial-protein
MKLNKIMLAAVMALGVSSLAHAADQGHGKVTFSGSIIDAPCSIAPESLDQTVELGAISNVALKNGGKSTPRNFQIKLENCELTTKNPGKNNTVALTFSGSSSEADSKLLGITGTAKGAGIAITDGAGTNIELGKPSKARELQSGANTLSFAAYLQGSSASTAVIVPGEFQSVADFTLAYQ
>NZ_CP003424.1|WP_042783494.1|355693_356236_+|type-1-fimbrial-protein
MNEKIKEIGAFCLLLAPFFISQQAMSAVQGEGRVNMQGAIIDTACAIATESREQIIDMDIMPVSDIARDGRGRTVPFSIELVNCVLERADKNLPDWKQFRITFDGNSDGEMFGISGNASGIALKITDADGNIATPGKSLPSVNILPGNYRLNYAMTLISNQRPLKAGDYFSSVRFKMDYY
>NZ_CP003424.1|WP_042783495.1|356282_358823_+|outer-membrane-usher-protein
MMFLPAGKPFRLHILSACVALVLGSLASKAGAVEDIQFNTDVLDVNDRKNIDLSQFSRGGYIMPGQYGMVVHVNKIDLPEQPVAFYAPDDDAGGSRACLSPELVAQLGIRDEALKKLTWWREGACLDEASLPGMEVRGELATSALYLSIPQAYLDYVSEDWDPPSRWDEGVPGVLLDYNINAQTQHQLQAGTRGYSVSGNGTAGANLGAWRLRADWQGNLNHQTGSGQSTDKQLDWSRYYAYRAIPALRSKLTLGEDYLDSGLFDSFRFGGVSLRSDDNMLPPNLRGYAPEVSGVAKSNAKVTVSQQGRVLYETTVAAGPFRIQDLNDAVSGDLDVRLEEQDGSVQEFKMSTASIPYLTRPGSLRYKLAAGKPSDMDHRYQGPMFGTGEFSWGVSNGWSLFGGALLGGDYNAAALGIGRDLMLLGALSFDVTQSRAKLPYNGETLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQNFMSMSEYLDARQYGQRFGNSKEMYTITYNQQLRDIGLSAYLNVSHQTYWDRPANDRYSLTMSRYFDLGDYKNLSLSLSAYRNRYNETNDDGMYLSLSLPWGNGATLSYNATLNRDDSTHRVGYYDRIDDRSNYQISAGGSRSGANLSGYYNRDGDLARMSANASYQQDRYSAIGGSLQGGMTLTAEGGALHRSNMAGGTRLLLDTEGVAGVPVRGYGSTMATNRWGKAVVVDVNSYYRNKASIDLDKLGDNAEATTSVVQATLTEGAIGYRKFAVIAGEKAMAVIKLADGGEPPFGATVLNARKQETGIVNDGGSVYLSGINAGDRMTVRWNGAEQCEVQMPTPLPAEMLTANLLLPCRALSAGTGGDEH
>NZ_CP003424.1|WP_139375474.1|358837_359593_+|fimbria/pilus-periplasmic-chaperone
MMSKRNAIGLLATTSLLAGALAPTAQAAIALDRTRVIFDGGVQSVSLSVSNQNKQLPYLAQGWLEDEQGNKIQSPLTVLPPVQRIEPGKPSQVKIQALPAAKMLPQDRETLYYFNLREIPPKSNKPNSLQIALQTRIKLFYRPAAIAPERNAAPWQEQLTLSKQGDKYVVNNPTPYYVTLVDAASRKGVEGAKGFEPLMVPPKGSLPLTVSAGSVGNSPVLTYINDYGGRPQLSFSCAGAVCKVVPEKKAS
>NZ_CP003424.1|WP_156965079.1|359734_360148_+|hypothetical-protein
MLKRMAFPFFIYFYSVNVFSAAWEMKTEYRPINATYGHFVAKIIAWDTEDKTPNPLYGCNSGQEYCYLAFVNGNTPFMNKVYFSGVTTSKTLGELGKKFIQNGLLNREYRSKDYDYPNQPHCIYFGYNTLQVIAHGG
>NZ_CP003424.1|WP_042783496.1|360198_360537_+|hypothetical-protein
MCELREPLVELDHGMLRAEVINGSTAEAQLTVACTFNFKVRIMSSDRSGTVYFNDKKQFRSELKLDGVNVGDGLLITATPAGKTLTLTSTLAGYDGSVGEFQGAKSIIISLP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2980184 : 3019378

Salmonella_phage(32.61%)

integrase,head,protease,capsid,lysis,tail,holin,portal

attL 2979898:2979919|attR 3019410:3019431

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2979898:2979919	attL	NA	NA	NA	NA
WP_049866686.1\|2980184_2982539_-	hypothetical protein	A0A249Y293	Serratia_phage	1.9e-145	42.9
WP_042784814.1\|2982946_2983198_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	2.0e-16	53.2
WP_084587987.1\|2983681_2986045_-	lytic transglycosylase domain-containing protein	B9UDL1	Salmonella_phage	2.2e-221	66.1
WP_042784816.1\|2986158_2987508_-	DNA injection protein	E7C9U5	Salmonella_phage	2.3e-50	40.0
WP_049866722.1\|2987507_2988161_-	hypothetical protein	I6S1K1	Salmonella_phage	4.0e-40	55.6
WP_042784817.1\|2988216_2988675_-	DUF2824 family protein	G5DA79	Enterobacteria_phage	2.6e-70	84.4
WP_049866687.1\|2988674_2989589_-\|tail	phage tail protein	Q9AYZ3	Salmonella_phage	9.2e-35	37.6
WP_042784818.1\|2989585_2991013_-	Packaged DNA stabilization protein gp10	I1TEJ1	Salmonella_phage	1.4e-207	70.3
WP_004940081.1\|2991020_2991503_-\|head	head DNA stabilization protein	Q716G8	Shigella_phage	7.4e-76	83.6
WP_004940084.1\|2991477_2991663_-	hypothetical protein	Q716G9	Shigella_phage	3.4e-21	80.3
WP_042784820.1\|2991702_2992977_-\|head	head protein	Q716H0	Shigella_phage	9.0e-222	92.2
WP_042784821.1\|2992988_2993876_-\|capsid	phage capsid scaffolding protein	Q716H1	Shigella_phage	1.1e-98	73.6
WP_042784823.1\|2993889_2996016_-\|portal	portal protein	Q9AYZ9	Salmonella_phage	0.0e+00	89.0
WP_042784824.1\|2996018_2997479_-	DNA packaging protein	Q2A0C1	Sodalis_phage	6.9e-234	76.9
WP_042784825.1\|2997429_2997951_-	hypothetical protein	F8TUR4	EBPR_podovirus	1.2e-26	50.0
WP_042784826.1\|2997959_2998292_-	hypothetical protein	NA	NA	NA	NA
WP_071883555.1\|2998418_2998979_-	hypothetical protein	A0A096XV31	Lactococcus_phage	2.4e-17	35.3
WP_049866723.1\|2998980_2999217_-	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	7.9e-15	56.8
WP_042784827.1\|2999410_2999857_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	9.1e-20	46.9
WP_042784828.1\|2999853_3000288_-	lysozyme	Q5G8R3	Enterobacteria_phage	3.3e-51	71.0
WP_042784830.1\|3000271_3000604_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.5e-43	72.5
WP_042784833.1\|3001390_3001882_-	DUF1133 family protein	I6S672	Salmonella_phage	1.8e-69	78.5
WP_042784834.1\|3002069_3002651_-	protein ninG	A0A2R2Z332	Escherichia_phage	6.5e-34	41.1
WP_042784835.1\|3002643_3002823_-	hypothetical protein	NA	NA	NA	NA
WP_042784838.1\|3002995_3003328_-	DUF2591 domain-containing protein	G8C7S4	Escherichia_phage	1.6e-45	79.2
WP_042784839.1\|3003324_3003549_-	hypothetical protein	R9W0Y3	Serratia_phage	4.7e-25	79.7
WP_156965105.1\|3003545_3003716_-	NinE family protein	NA	NA	NA	NA
WP_042784840.1\|3003712_3004150_-	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	6.5e-47	67.4
WP_156965106.1\|3004340_3004595_-	hypothetical protein	F1C5B5	Cronobacter_phage	1.9e-06	65.7
WP_042784841.1\|3004618_3005956_-	AAA family ATPase	A0A2I7S0U1	Vibrio_phage	7.3e-81	37.5
WP_084587966.1\|3006007_3006847_-	replication protein	I6PDJ3	Cronobacter_phage	5.3e-37	69.7
WP_004940137.1\|3007032_3007311_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	9.6e-20	56.7
WP_004940138.1\|3007420_3007651_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	1.4e-16	63.4
WP_084587967.1\|3007690_3008380_+	LexA family transcriptional regulator	A0A1R3Y604	Salmonella_virus	1.1e-19	29.5
WP_071883557.1\|3008988_3009237_+	hypothetical protein	Q9EYB0	Enterobacteria_phage	1.6e-05	36.7
WP_156965107.1\|3009251_3009527_+	hypothetical protein	NA	NA	NA	NA
WP_156965108.1\|3009691_3009943_+	DUF551 domain-containing protein	S4SIA3	Salmonella_phage	2.7e-13	55.7
WP_020827381.1\|3010095_3010230_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
WP_042784842.1\|3010339_3010540_+	hypothetical protein	NA	NA	NA	NA
WP_156965109.1\|3010536_3010704_+	hypothetical protein	NA	NA	NA	NA
WP_156965110.1\|3010713_3010998_+	hypothetical protein	A0A1W6JP21	Morganella_phage	1.0e-29	70.2
WP_042784847.1\|3012586_3013045_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	9.2e-52	77.2
WP_042784848.1\|3013072_3013405_+	hypothetical protein	NA	NA	NA	NA
WP_042784849.1\|3013589_3014072_+	hypothetical protein	R9W085	Serratia_phage	1.2e-06	35.9
WP_042784850.1\|3014068_3014317_+	hypothetical protein	A0A1B0VMD8	Pseudomonas_phage	1.3e-20	61.6
WP_049866690.1\|3014313_3014673_+	hypothetical protein	A0A2I7RVG6	Vibrio_phage	1.9e-15	56.2
WP_042784851.1\|3014665_3014869_+	hypothetical protein	R9VYJ0	Serratia_phage	4.8e-29	89.1
WP_042784852.1\|3014865_3015141_+	hypothetical protein	S4TW48	Salmonella_phage	1.8e-18	59.0
WP_042784853.1\|3015130_3015697_+	hypothetical protein	NA	NA	NA	NA
WP_042784854.1\|3015697_3015952_+	hypothetical protein	A0A2P0P958	Salmonella_phage	7.7e-16	51.7
WP_004940162.1\|3016591_3016852_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.0e-18	57.9
WP_042784855.1\|3016861_3017116_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.2e-23	64.3
WP_004940166.1\|3017186_3017408_+	hypothetical protein	NA	NA	NA	NA
WP_042784856.1\|3017400_3017610_+	hypothetical protein	E5AGD4	Erwinia_phage	4.7e-11	50.0
WP_042784857.1\|3017606_3017798_+	hypothetical protein	NA	NA	NA	NA
WP_071883560.1\|3017814_3018063_+	excisionase family protein	S4TND0	Salmonella_phage	1.5e-19	62.5
WP_042784859.1\|3018094_3019378_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	4.2e-150	59.1
3019410:3019431	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3462007 : 3482761

Klebsiella_phage(23.53%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071883568.1\|3462007_3464029_-\|tail	phage tail protein	A0A1I9SF20	Klebsiella_phage	2.3e-30	42.5
WP_042785073.1\|3464025_3465186_-\|tail	tail fiber domain-containing protein	A0A1V0E5M2	Salmonella_phage	1.1e-43	57.8
WP_042785074.1\|3465236_3468824_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	66.0
WP_042785075.1\|3468877_3469483_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	2.2e-53	56.4
WP_127554718.1\|3469516_3469849_-	hypothetical protein	NA	NA	NA	NA
WP_033652515.1\|3469886_3470591_-	C40 family peptidase	K7PGR2	Enterobacteria_phage	6.3e-108	76.2
WP_103086416.1\|3470600_3471350_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.0e-95	64.9
WP_019453671.1\|3471362_3471701_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.2e-34	60.9
WP_042785076.1\|3471700_3474040_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	3.8e-16	42.3
WP_025160180.1\|3474271_3474637_-\|tail	phage tail protein	Q7Y401	Yersinia_phage	6.5e-24	45.0
WP_033652513.1\|3474763_3475219_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	2.5e-57	75.5
WP_042785077.1\|3475259_3475652_-	hypothetical protein	Q7Y404	Yersinia_phage	2.3e-19	45.2
WP_042785078.1\|3475648_3476038_-	hypothetical protein	Q7Y405	Yersinia_phage	3.7e-25	42.1
WP_042785079.1\|3476095_3476536_-	lysozyme	A0A0M5M782	Salmonella_phage	3.4e-43	62.3
WP_033652509.1\|3476522_3476843_-\|holin	holin	F1C5D1	Cronobacter_phage	1.1e-40	81.0
WP_042785760.1\|3477744_3478107_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	6.0e-38	64.6
WP_042785081.1\|3478349_3479027_+	hypothetical protein	K7PK07	Enterobacteria_phage	3.2e-08	29.6
WP_004935874.1\|3479445_3479775_-	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_033643833.1\|3479902_3480370_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_033643834.1\|3480478_3481057_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_033651921.1\|3481050_3481467_-	glyoxalase	NA	NA	NA	NA
WP_033651922.1\|3481624_3482761_-	porin OmpC	Q1MVN1	Enterobacteria_phage	4.0e-104	53.8

DBSCAN-SWA_3

3755594 : 3762688

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033651533.1\|3755594_3755948_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-19	47.0
WP_033644019.1\|3756148_3756379_+	hypothetical protein	J9Q735	Salmonella_phage	4.2e-13	50.7
WP_033644020.1\|3756392_3756932_+	DNA-binding protein	J9Q7G7	Salmonella_phage	4.0e-46	56.6
WP_025159568.1\|3756945_3757647_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_016926729.1\|3757919_3758435_+	hypothetical protein	NA	NA	NA	NA
WP_016926728.1\|3758468_3758717_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_033651534.1\|3758764_3760054_-	uracil permease	Q9KX94	Enterobacteria_phage	6.0e-64	38.2
WP_004941642.1\|3760130_3760757_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_025303843.1\|3761012_3762050_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	3.8e-69	41.9
WP_033651535.1\|3762049_3762688_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-26	39.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage