CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP008899	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-8a4, complete sequence	0 crisprs	RT,csa3	3
NZ_CP008900	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence	0 crisprs	NA	0
NZ_CP008898	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-576, complete sequence	0 crisprs	csa3	2
NZ_CP008897	Enterobacter hormaechei subsp. hoffmannii ECNIH3 chromosome, complete genome	3 crisprs	DEDDh,csa3,WYL,DinG,cas3,c2c9_V-U4	5
NZ_CP008901	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pKPC-47e, complete sequence	0 crisprs	NA	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59136 : 94658

Acinetobacter_phage(22.22%)

protease,transposase,integrase

attL 57439:57452|attR 75351:75364

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
57439:57452	attL	NA	NA	NA	NA
WP_000795949.1\|59136_60312_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001285422.1\|60481_60694_+	hypothetical protein	NA	NA	NA	NA
WP_001232447.1\|61054_62137_+	hypothetical protein	NA	NA	NA	NA
WP_001284318.1\|62302_63802_-	kinase	NA	NA	NA	NA
WP_000081059.1\|63827_65465_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_001253656.1\|65464_66505_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001253658.1\|66589_67228_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|67227_67869_-	TerD family protein	NA	NA	NA	NA
WP_001253657.1\|67891_68530_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|68992_69460_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_011152964.1\|69477_70686_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_011152965.1\|70696_71653_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001585166.1\|71652_72732_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_001040058.1\|72733_73507_-	hypothetical protein	NA	NA	NA	NA
WP_001280115.1\|73499_74642_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	6.5e-30	34.5
WP_012695441.1\|74651_75710_-	hypothetical protein	NA	NA	NA	NA
75351:75364	attR	NA	NA	NA	NA
WP_000254137.1\|76030_76612_+	tellurium resistance-associated protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054786.1\|76611_77769_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|77791_78247_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|78269_79310_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|79358_79937_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301247.1\|80005_80581_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053340.1\|81009_82251_+	tellurium resistance protein TerF	NA	NA	NA	NA
WP_001067855.1\|82360_83065_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000252081.1\|83374_84268_+	hypothetical protein	NA	NA	NA	NA
WP_001371935.1\|84439_84670_+	hypothetical protein	NA	NA	NA	NA
WP_000071366.1\|84848_85169_+	hypothetical protein	NA	NA	NA	NA
WP_001165367.1\|85685_85997_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001371932.1\|86001_86493_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_000781547.1\|87045_87249_+	hypothetical protein	NA	NA	NA	NA
WP_000551490.1\|87303_87528_+	hypothetical protein	NA	NA	NA	NA
WP_000814953.1\|87567_87768_+	hypothetical protein	NA	NA	NA	NA
WP_000633161.1\|87990_88302_+	hypothetical protein	NA	NA	NA	NA
WP_000703842.1\|88677_88959_+	hypothetical protein	NA	NA	NA	NA
WP_000137794.1\|89175_89781_+	hypothetical protein	NA	NA	NA	NA
WP_085949440.1\|90113_91482_+\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-108	95.5
WP_000589001.1\|91657_92998_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000219087.1\|93419_94658_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1

DBSCAN-SWA_2

139722 : 155376

uncultured_Caudovirales_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100185530.1\|139722_140637_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4
WP_000900745.1\|140802_141120_+	hypothetical protein	NA	NA	NA	NA
WP_001371904.1\|141170_141578_-	hypothetical protein	NA	NA	NA	NA
WP_000285959.1\|142035_142707_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_001100610.1\|142751_143057_-	hypothetical protein	NA	NA	NA	NA
WP_000785965.1\|143079_143397_-	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|143610_145014_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|145042_145675_-	hypothetical protein	NA	NA	NA	NA
WP_072034961.1\|145749_146151_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.9e-65	98.4
WP_013815099.1\|146152_147121_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_080470381.1\|147117_147462_+	MFS transporter	NA	NA	NA	NA
WP_022652343.1\|147483_148452_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
WP_000125668.1\|148671_150075_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000130816.1\|150107_150812_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000941305.1\|150898_151219_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000922628.1\|151264_152554_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000065802.1\|152566_152992_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_001066652.1\|153051_153879_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000927306.1\|153897_155376_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4

DBSCAN-SWA_3

169357 : 205915

Salmonella_phage(37.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072196614.1\|169357_170326_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_001572373.1\|170514_172134_+	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572372.1\|172210_172687_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_001067855.1\|172852_173557_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001287391.1\|173918_174323_+	H-NS histone family protein	NA	NA	NA	NA
WP_000784387.1\|174929_175787_-	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001224686.1\|175802_176111_-	hypothetical protein	NA	NA	NA	NA
WP_000278471.1\|176659_177085_-	hypothetical protein	NA	NA	NA	NA
WP_001166628.1\|177762_178218_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294656.1\|178289_178655_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|178670_178946_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|178973_179399_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|179437_181123_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|181140_181506_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|181502_181739_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|181722_181842_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|181804_182017_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000118563.1\|182025_183102_-	signal peptidase II	NA	NA	NA	NA
WP_012695446.1\|183098_185504_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.6e-141	46.0
WP_000405672.1\|185589_186024_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427623.1\|186114_187119_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001805097.1\|187300_187825_-	hypothetical protein	NA	NA	NA	NA
WP_000985909.1\|187837_188248_-	hypothetical protein	NA	NA	NA	NA
WP_000134171.1\|188348_188555_-	hypothetical protein	NA	NA	NA	NA
WP_012477377.1\|189934_190228_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012695445.1\|190628_192017_-	hypothetical protein	NA	NA	NA	NA
WP_000340139.1\|192021_192519_-	membrane protein	NA	NA	NA	NA
WP_000462754.1\|192721_193378_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_000341066.1\|194036_194429_-	hypothetical protein	NA	NA	NA	NA
WP_000211823.1\|195349_196336_+	hypothetical protein	NA	NA	NA	NA
WP_000166877.1\|196332_198372_+	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	1.7e-25	25.3
WP_000880375.1\|198374_198629_-	hypothetical protein	NA	NA	NA	NA
WP_001151572.1\|199615_199957_+	hypothetical protein	NA	NA	NA	NA
WP_000398479.1\|200048_200240_+	hypothetical protein	NA	NA	NA	NA
WP_000374058.1\|200480_200936_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|201040_201745_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001138070.1\|201865_204832_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|204910_205915_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP008898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23723 : 34178

uncultured_Caudovirales_phage(85.71%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118534.1\|23723_24098_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
WP_001549953.1\|24626_25823_+	MFS transporter	NA	NA	NA	NA
WP_004118529.1\|25894_26722_-	universal stress protein	NA	NA	NA	NA
WP_001549885.1\|26740_28219_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_001549886.1\|28702_29056_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549887.1\|29151_30435_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549888.1\|30484_30913_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_004118521.1\|30970_31693_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
WP_001549890.1\|31689_32022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099755463.1\|33139_33337_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_032722221.1\|33626_34178_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	8.1e-18	33.1

DBSCAN-SWA_2

52233 : 61673

Escherichia_phage(57.14%)

integrase,transposase

attL 48252:48266|attR 53696:53710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
48252:48266	attL	NA	NA	NA	NA
WP_000015958.1\|52233_53010_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000764642.1\|53067_53325_-	hypothetical protein	NA	NA	NA	NA
WP_032409716.1\|53453_53558_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|54092_54959_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
53696:53710	attR	NA	NA	NA	NA
WP_000339857.1\|55315_55585_-	hypothetical protein	NA	NA	NA	NA
WP_000368714.1\|56000_57206_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000064120.1\|57205_58180_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_004118291.1\|58261_59533_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_040119803.1\|59532_59964_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-28	52.5
WP_001067855.1\|60968_61673_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP008897

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008897_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008897_1

1543448-1543561

Orphan

Consensus_repeat	Method
GCCGGGTAAACGCAGTGTCACCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008897_1

>merge|NZ_CP008897|1|1543448-1543561|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAAAAAGCCCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAGGCCGGGTAAACGCAGTGCCACCCGGCAA

>NZ_CP008897|1|1|1543448-1543561|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAA	AAAGCCCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAG
GCCGGGTAAACGCAGTGCCACCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008897.1\|WP_022647603.1\|1541626_1543345_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP008897.1\|WP_038415758.1\|1531610_1532408_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP008897.1\|WP_022647609.1\|1551194_1552310_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP008897.1\|WP_022647599.1\|1536062_1537889_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP008897.1\|WP_038415757.1\|1531128_1531614_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP008897.1\|WP_038415759.1\|1532661_1535385_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|214753
NZ_CP008897.1\|WP_006174393.1\|1554806_1555127_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP008897.1\|WP_038415767.1\|1548423_1550082_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP008897.1\|WP_038417009.1\|1547436_1548132_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP008897.1\|WP_006174390.1\|1554317_1554539_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP008897.1\|WP_023305795.1\|1552306_1554247_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP008897.1\|WP_038415763.1\|1544562_1546215_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP008897.1\|WP_038415756.1\|1529998_1531132_+\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP008897.1\|WP_038415760.1\|1535487_1535928_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP008897.1\|WP_038415761.1\|1539139_1540576_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP008897.1\|WP_022647600.1\|1538033_1539047_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP008897.1\|WP_032624552.1\|1540586_1541588_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP008897.1\|WP_038418019.1\|1550078_1551035_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP008897.1\|WP_038415762.1\|1543583_1544552_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP008897.1\|WP_038415765.1\|1546359_1547259_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NZ_CP008897.1\|WP_022647603.1\|1541626_1543345_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP008897.1\|WP_038415758.1\|1531610_1532408_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.34145e-42
NZ_CP008897.1\|WP_022647609.1\|1551194_1552310_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP008897.1\|WP_022647599.1\|1536062_1537889_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	4.22012e-72
NZ_CP008897.1\|WP_038415757.1\|1531128_1531614_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	5.53384e-26
NZ_CP008897.1\|WP_038415759.1\|1532661_1535385_+\|glycoside-hydrolase	gnl\|CDD\|214753	smart00636, Glyco_18, Glyco_18 domain.	6.74379e-123
NZ_CP008897.1\|WP_006174393.1\|1554806_1555127_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP008897.1\|WP_038415767.1\|1548423_1550082_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP008897.1\|WP_038417009.1\|1547436_1548132_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.63287e-146
NZ_CP008897.1\|WP_006174390.1\|1554317_1554539_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.04122e-47
NZ_CP008897.1\|WP_023305795.1\|1552306_1554247_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP008897.1\|WP_038415763.1\|1544562_1546215_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP008897.1\|WP_038415756.1\|1529998_1531132_+\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.83174e-39
NZ_CP008897.1\|WP_038415760.1\|1535487_1535928_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	1.71444e-86
NZ_CP008897.1\|WP_038415761.1\|1539139_1540576_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.50683e-140
NZ_CP008897.1\|WP_022647600.1\|1538033_1539047_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.04343e-52
NZ_CP008897.1\|WP_032624552.1\|1540586_1541588_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP008897.1\|WP_038418019.1\|1550078_1551035_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	7.69713e-123
NZ_CP008897.1\|WP_038415762.1\|1543583_1544552_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP008897.1\|WP_038415765.1\|1546359_1547259_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.69004e-117

>NZ_CP008897.1|WP_022647603.1|1541626_1543345_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPADEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP008897.1|WP_032624552.1|1540586_1541588_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGNEHAAALGEFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP008897.1|WP_038415761.1|1539139_1540576_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAVARNTERLQKLHLPGVTCHNVDLNWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDTLLQTPVKQVIFLSSLQAPENEQSDHLRARQLTAETLRSALIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAAAHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLVPVPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRELRALIPQELIPFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLSALWDVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAAPYLNVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDKGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRESN
>NZ_CP008897.1|WP_022647600.1|1538033_1539047_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIISLDEGIVRTAAWLRDHGKLHR
>NZ_CP008897.1|WP_022647599.1|1536062_1537889_+|PKD-domain-containing-protein
MNKRTLLSVLVAGACVAPFMAQAASLQATTGEPYTMKASDLAKKEHELTNFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKEGDYSKCVQKFYNVNIVNDDGSSVTPDETPVTPTPTPSEDVTPAPTPAPVPDETPVEPVAVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDADGNKLTYTWRSQDGQTVTGEDKAVVTFKAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNSAPTYYEPGAGLAWAEAWTAL
>NZ_CP008897.1|WP_038415760.1|1535487_1535928_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQGALANCWDKAARYYHVDPYLLYAIANVESGMNPYAVGKKRDGTRDVGLMQINSSHFTALESRGIDEYRLMTEPCTSIMVGASILSGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARD
>NZ_CP008897.1|WP_038415759.1|1532661_1535385_+|glycoside-hydrolase
MKFMKPKYLALFIAAATSSAFAAAPGTPSITSGNDKFALVEVDQAAQDYNNLIKVHKEGVDVKVEWNVWSGDAPTSAKVLLDGKTVWTGAGSAAGSATFKVKKGGRYQEQVELCNDSGCTKSASKLIIVADTDGSHLLPLNTPLLENNKAFAQHTDKVVGAYFPEWGVYDRNFSADKIPVANINHLLYGFIPICGGDGINDSAKSSGALESLKRACAGRQDYTVAIHDPWAALQKPQKGVSNWDDPYKGNYGQLMAMKKAHPDLKILPSIGGWTLSDPFYQMDNKVLRDRFVASVKDFLTTWKVFDGVDIDWEFPGGGGENAKLGNPQTDKATYTALMHDLRQMLNELSAETGRTYELTTAIGAGKDKIEDVDYNTTQQYLDHIFLMSYDFYGAWSNTDLGHQTALYGASWKPDTNYTTDNAVKAMLEQGVKPGKIVVGAGMYGRGWTGVHGYTGDNPFTGTATGPIKGTWENGIVDYRQIVNQMLGKPGWEYKYDEAAEAPYVFNKSTGELVTYDNARSVMAKGKYVLNKNLGGLFAWSIESDNGDILNAMNESLLGGSSIPDLPVETNHAPVASAADQNVTGPATVTLDGSASSDQDDDALTYKWTQVSGPSVTIANSTKAKASFSVPAVTSDQNLVFRLTVTDAKGLSNAVDVQVVNKAPKANQAPVINAMEAVTVQSGEAISLHAQASDPDGDALTYSWSVPADMNATGTDSANVRITAPEVHNTSSYTLSVIVTDGKTSVQSDVQVTVEPKPADEVTPPADDVTPPVDDVTPPADDVTPPADDVTPPADDTTGSCDAPVDANASKYAAWDASKIYNNGDTVSFDHLVWKAKYWTQGNQPGFGMDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP008897.1|WP_038415758.1|1531610_1532408_+|prepilin-peptidase
MNTFTLMREACPLGFPMMSAILGGIMGSFLGVVAERVPGMVMDEEGSGNLLFPASHCPVCQHTLAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELFSALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAIDHTLPLRDALFGAVAGYLSLWLLYWAFRLIVGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFSGIVVFISQQFAFTF
>NZ_CP008897.1|WP_038415757.1|1531128_1531614_+|type-II-secretion-system-protein-M
MKERIVQLKSRYQNYSAREKIILKICAVAIVAAAVYYTGVIPLDNIIQNSKSTLKRQKETLNWMRSEIDKNHLQVQLVKTNNPRTVVENSAHEINLSLTDVRQEGQTLSFVVNRVNVYELKSWLREINQTSGVTLQKINLTPVDHLSDVKAQVQLTWSKSA
>NZ_CP008897.1|WP_038415756.1|1529998_1531132_+|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMCCESGSERVEVLDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLYKKGADVDAVAIDADRLRAALTRCHEAGLNVIQALPDAWLLPVAAGGSTLVVQDKGYWLRLSPHVAGEMEGTLLPLLMQKAGDGEVCCYGDAPADVHVDVQHAWQHPLVLIQPQWKTCRMNLLHGEFSLKAGHGQAAKSMKAAMIAAGLLSVGLLLGPRIAMTWMLVQQENRVQQEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLEELEKARQSVPAMEIDLLEYDAQQNTLTLSVSAQSQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP008897.1|WP_038415762.1|1543583_1544552_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIQQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSRWLTRDVKRGDYIWLSDAQGEFTCDDKKEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSREMLQSVPDIADRTVMTCGPAPYMEIVEKEVKALGVARFFKEQFFTPVAAAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP008897.1|WP_038415763.1|1544562_1546215_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGLVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLCA
>NZ_CP008897.1|WP_038415765.1|1546359_1547259_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLGTNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSMAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSMLVPILMAFFSA
>NZ_CP008897.1|WP_038417009.1|1547436_1548132_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGIMGGVLYRTLLEKRD
>NZ_CP008897.1|WP_038415767.1|1548423_1550082_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPNGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTTLPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP008897.1|WP_038418019.1|1550078_1551035_-|DUF535-domain-containing-protein
MSSIVDTPYSTLSQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQNTLDALDNHYQMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCKYQGKSTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQENGNFALPLTMPRKPMKEIASKKRSEYRRRYILLDSLHQQVSQATAR
>NZ_CP008897.1|WP_022647609.1|1551194_1552310_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLSRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSESLPGAAQ
>NZ_CP008897.1|WP_023305795.1|1552306_1554247_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAAKEALPAATGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTNVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSGLAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP008897.1|WP_006174390.1|1554317_1554539_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAEAVA
>NZ_CP008897.1|WP_006174393.1|1554806_1555127_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Crispr_ID: NZ_CP008897_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008897_2

3219923-3220031

Orphan

Consensus_repeat	Method
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008897_2

>merge|NZ_CP008897|2|3219923-3220031|CRISPRCasFinder
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGGGGAACACCCGGTCGATTGGGCTGCACTGCTGTCTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG

>NZ_CP008897|2|2|3219923-3220031|CRISPRCasFinder
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGG	GGAACACCCGGTCGATTGGGCTGCACTGCTGTC
TGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008897.1\|WP_000262116.1\|3226602_3227091_-\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP008897.1\|WP_022648839.1\|3213672_3214116_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP008897.1\|WP_023300639.1\|3227345_3228032_-\|cell-division-protein-DedD	unknown	unknown	gnl\|CDD\|236940
NZ_CP008897.1\|WP_006811404.1\|3221537_3222224_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185089
NZ_CP008897.1\|WP_023300632.1\|3215375_3215942_-\|NUDIX-hydrolase-YfcD	unknown	unknown	gnl\|CDD\|185291
NZ_CP008897.1\|WP_038416453.1\|3216605_3217250_-\|glutathione-transferase	unknown	unknown	gnl\|CDD\|185068
NZ_CP008897.1\|WP_038416456.1\|3218095_3218464_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP008897.1\|WP_015572254.1\|3224392_3224962_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP008897.1\|WP_023300631.1\|3214352_3215372_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NZ_CP008897.1\|WP_038416461.1\|3228021_3229290_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP008897.1\|WP_003861421.1\|3222312_3223095_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	unknown	unknown	gnl\|CDD\|185334
NZ_CP008897.1\|WP_003861447.1\|3213320_3213593_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP008897.1\|WP_003861424.1\|3220827_3221541_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185029
NZ_CP008897.1\|WP_038416460.1\|3223319_3224102_-\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	unknown	unknown	gnl\|CDD\|184972
NZ_CP008897.1\|WP_038416454.1\|3217390_3218020_+\|GSH-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|172475
NZ_CP008897.1\|WP_003861426.1\|3220044_3220818_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	unknown	unknown	gnl\|CDD\|182592
NZ_CP008897.1\|WP_023300635.1\|3218477_3219371_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP008897.1\|WP_017383437.1\|3211907_3213299_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|171824
NZ_CP008897.1\|WP_023300633.1\|3215997_3216549_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|181869
NZ_CP008897.1\|WP_008502595.1\|3225051_3226569_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427

Protein	Function_ID	Function_description	E-value
NZ_CP008897.1\|WP_000262116.1\|3226602_3227091_-\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	4.56596e-105
NZ_CP008897.1\|WP_022648839.1\|3213672_3214116_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.34099e-38
NZ_CP008897.1\|WP_023300639.1\|3227345_3228032_-\|cell-division-protein-DedD	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	1.61758e-123
NZ_CP008897.1\|WP_006811404.1\|3221537_3222224_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185089	PRK15135, PRK15135, histidine ABC transporter permease HisQ.	5.44036e-153
NZ_CP008897.1\|WP_023300632.1\|3215375_3215942_-\|NUDIX-hydrolase-YfcD	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	4.19565e-130
NZ_CP008897.1\|WP_038416453.1\|3216605_3217250_-\|glutathione-transferase	gnl\|CDD\|185068	PRK15113, PRK15113, glutathione transferase.	1.22672e-144
NZ_CP008897.1\|WP_038416456.1\|3218095_3218464_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	7.22606e-80
NZ_CP008897.1\|WP_015572254.1\|3224392_3224962_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	6.62312e-127
NZ_CP008897.1\|WP_023300631.1\|3214352_3215372_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.01675e-105
NZ_CP008897.1\|WP_038416461.1\|3228021_3229290_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP008897.1\|WP_003861421.1\|3222312_3223095_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	gnl\|CDD\|185334	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional.	0
NZ_CP008897.1\|WP_003861447.1\|3213320_3213593_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.34821e-35
NZ_CP008897.1\|WP_003861424.1\|3220827_3221541_-\|ABC-transporter-permease	gnl\|CDD\|185029	PRK15069, PRK15069, histidine ABC transporter permease HisM.	3.44404e-162
NZ_CP008897.1\|WP_038416460.1\|3223319_3224102_-\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	gnl\|CDD\|184972	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT.	7.30467e-174
NZ_CP008897.1\|WP_038416454.1\|3217390_3218020_+\|GSH-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	9.79872e-118
NZ_CP008897.1\|WP_003861426.1\|3220044_3220818_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	gnl\|CDD\|182592	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP.	0
NZ_CP008897.1\|WP_023300635.1\|3218477_3219371_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	2.53159e-171
NZ_CP008897.1\|WP_017383437.1\|3211907_3213299_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|171824	PRK12996, ulaA, PTS ascorbate transporter subunit IIC.	0
NZ_CP008897.1\|WP_023300633.1\|3215997_3216549_-\|phosphodiesterase	gnl\|CDD\|181869	PRK09453, PRK09453, phosphodiesterase; Provisional.	1.42984e-121
NZ_CP008897.1\|WP_008502595.1\|3225051_3226569_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0

>NZ_CP008897.1|WP_023300635.1|3218477_3219371_+|TIGR01777-family-protein
MKILLTGGTGLIGRHLIPRLQALHHDITVVTRSPEKARQVLGTGVEIWKGLAERQDLNGFDAVINLAGEPIADKRWTEEQKQRLCSSRWNMTERLVELIRNSEMPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCAQWERIACGAQSDNTRVCLLRTGVVLAPKGGILGKMLPPFKMGLGGPIGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVRNEQFAHALGHALHRPAVLRVPATAIRLLMGESSVLVLGGQRALPKRLEAAGFTFRWYDLEEALGDVVQ
>NZ_CP008897.1|WP_038416456.1|3218095_3218464_+|dihydroneopterin-triphosphate-2'-epimerase
MSQLDAIIRIKNLRLRTFIGIKEEEIANRQDIVVNVVIHYPADKARASEDINDALNYRTITKSIIQYVENNRFALLEKLTQDVLDIAREHHWVTYAEVEIDKLHALRYADSVSMTLSWQRQA
>NZ_CP008897.1|WP_038416454.1|3217390_3218020_+|GSH-dependent-disulfide-bond-oxidoreductase
MIDLYYAPTPNGHKITLFLEEAELDYRIIRVDISKGDQFRPVFLAISPNNKIPAIIDNLPSDGGKPLSLFESGEILLYLAEKTGKLLSGELRERHHTLQWLFWQSSGLGPMLGQNHHFTAYAPQTIPYAIERYQVETQRLYGVLNRRLEKSPWLGGEHYSIADIACWPWINTHERHRIDLATYPAVNNWFERIRTRPATERAMQKIHQT
>NZ_CP008897.1|WP_038416453.1|3216605_3217250_-|glutathione-transferase
MSQPVITLWSDANFFSPYVMSVYVALAEKGLTFSLKTVDLDSGEHLQPQWQGYALTRRVPVLEIDGFELSESSAIDEYLEDRFAPPEWERIYPHDLQKRARARQIQAWLRSDLVPIRTERSTDVVFAGVKKPALSEEGLSSARKLIDTASSLLSQGNPNLFGEWCIADTDLALMLNRLILNGDDVPQLLVDYATFQWQRASVQRYLALSAKRAG
>NZ_CP008897.1|WP_023300633.1|3215997_3216549_-|phosphodiesterase
MKLMFASDIHGSLPATERVLSLFAQSGAQWLVILGDVLNHGPRNALPEGYAPAQVAEKLNHFASRIIAVRGNCDSEVDQMLLQFPITAPWQQVLMENSRLFLTHGHLFGPDNLPSLAAGDVLVYGHTHIPVAEKRGAFYHFNPGSVSIPKGGNPASYGMYEDGTLSVIALNDQQVIAQIAINP
>NZ_CP008897.1|WP_023300632.1|3215375_3215942_-|NUDIX-hydrolase-YfcD
MVEQNHLASTEWVDIVSEENEVIAQASREQMRAERLRHRATYIVVHDGMGKILVQRRTDTKDFLPGMLDATAGGVVQADEVLLDSARREAEEELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWMTRNAKNESAKPENKPEKEEEAE
>NZ_CP008897.1|WP_023300631.1|3214352_3215372_+|LacI-family-DNA-binding-transcriptional-regulator
MSLTRKRRSTGKVTLADVAQLAGVGTMTVSRALRTPEQVSDKLREKIEAAVQELGYMPNLAASALASASSWTIAMVVPNLSEAGCSEMFAGLQQVLQPAGYQIMLAESQHRLEQEEKLLETLLASNIAAAILLSVEHSDTVRHWLKNASIPVMEMGAMRADPIDMNIGIDNVAAMYELTEMVIQRGYQNIGLLCANQEQWIFQQHLQGWYKAMLRHHLSPNRVINAAMPPSFSTGAAQLPEFLLAWPELDALVCVSDELACGALYECQRRRIKVPDDLAVVGFGDSDVSRVCQPPLTTMAVPHRKIGIEAGKALLERLNDGDWRDHKPIASSLCLRESC
>NZ_CP008897.1|WP_022648839.1|3213672_3214116_-|PTS-sugar-transporter-subunit-IIA
MLKKWIYDTTIILQDSVESWPQALELCAKPLLDLQVIAPEYVTAIIEQHHRLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLKQGVSFGAGEFDPVDVIVMLAAPDKHSHIEMISALAELFSSDEDMAELHRANTLEEIKTVINRF
>NZ_CP008897.1|WP_003861447.1|3213320_3213593_-|PTS-sugar-transporter-subunit-IIB
MKIMAICGSGLGSSFMVEMNIKKVLKKLEIEAEVEHSDLSSATPGAADLFVMAKDIAASASVPESQLVVINNIIDINELEAQLRAWFERQ
>NZ_CP008897.1|WP_017383437.1|3211907_3213299_-|PTS-ascorbate-transporter-subunit-IIC
MFILETLNFVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLGGMFEHAFNIQGIIPNNEAIVSIALEKYGASTALIMAFGMVANIIVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGVGLVFTGSLILGLIMAFFPAIAQRYMKRITGNDEIAFGHFGTLGYVLSGWIGSKVGKGSRSTEEMNLPKNLSFLRDSSISISLTMMIIYLIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLIGFLFSFLGGIVGLFICGQFSWVLILPGVVPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLPVLGAIGFANTTFSDADFGAVGIVLGNLARFLSPLAITGLVVVLFALLVAYNVFAKNKPASGNAQENPGAKS
>NZ_CP008897.1|WP_003861426.1|3220044_3220818_-|histidine-ABC-transporter-ATP-binding-protein-HisP
MAENKLNVIDLHKRYGEHEVLKGVSLEANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVSGQNINMVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPVQVLGLSKQEARERAVKYLAKVGIDERQQIKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQKLAEEGKTMVVVTHEMGFARNVSNHVIFLHQGKIEEQGHPDEVLANPQSPRLQQFLKGSLK
>NZ_CP008897.1|WP_003861424.1|3220827_3221541_-|ABC-transporter-permease
MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGILAVFLAIGRVSNNKFIQFPIWLFTYVFRGTPLYVQLLVFYSGMYTLEIVKGTEMLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSVKLYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFRKAEKRWLQHIKPSTH
>NZ_CP008897.1|WP_006811404.1|3221537_3222224_-|ABC-transporter-permease-subunit
MLYGFSGVILQGALVTLELAISSVVLAVLIGLAGAGAKLSANRPLALIFEGYTTLIRGVPDLVLMLLIFYGLQIALNGVTDAIGMDQIDIDPMVAGIITLGFIYGAYFTETFRGAYMAVPKGHIEAATAYGFTSSQTFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGVIYLVFTTVSNGVLLLLERRYSVGVKRADL
>NZ_CP008897.1|WP_003861421.1|3222312_3223095_-|histidine-ABC-transporter-substrate-binding-protein-HisJ
MKKLVLSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNAKGELVGFDIDLANELCKRIKAQCTYVENPLDALIPSLKAKKIDVIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKSSDIQPTLESLKGKRVGVLQGTTQETYGNEHWAPKGIEIVSYQGQENIYADLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSIKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYDKLAKKYFDFNVYGG
>NZ_CP008897.1|WP_038416460.1|3223319_3224102_-|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT
MKKTVLALSLLVGLSAAASSYAALPQTVRIGTDATYAPFSSKDAKGDFVGFDIDLGNEMCKRMEVKCTWVGSDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSEKLYAADSRLIAAKGSPIQPTVDSLKGKHVGVLQGSTQEGYANANWREKGVDVVAYQNQDLIYSDLAAGRLDAAFQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGIGLRKDDTELKAAFDKAFNELRKDGTYDKLAKKYFDFNVYGD
>NZ_CP008897.1|WP_015572254.1|3224392_3224962_-|UbiX-family-flavin-prenyltransferase
MKRLIVGISGASGAIYGVRLLQVLRDVAGVETHLVMSQAARQTLSLETDLSLRDVQALADVVHDARDIAASISSGSFKTAGMVILPCSIKTLSGIVNSYTDTLVTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAELGAVIMPPVPAFYHRPQTLDDVINQTVNRVLDQFDIDLPEDLFTRWQGA
>NZ_CP008897.1|WP_008502595.1|3225051_3226569_-|amidophosphoribosyltransferase
MCGIVGIAGFMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVNDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAVAATNRQIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDLGDGRSEYMVASESVALDTLGFEFLRDVAPGEAVYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWDDLDIDVVIPIPETSCDIALEIARILDKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGIYVTKDVDQQYLDYLDSLRNDDAKAVQLQNDLESLEMHNEG
>NZ_CP008897.1|WP_000262116.1|3226602_3227091_-|colicin-V-production-protein
MVWIDYAIIAVIGFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNYVIGQLVEKTGLSGTDRVLGICFGALRGVLIVAAILFFLDTFTGFSKSEDWQKSQLIPEFSFIIRWFFDYLQSSSSFLPRA
>NZ_CP008897.1|WP_023300639.1|3227345_3228032_-|cell-division-protein-DedD
MASKFQNRLTGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAATQALPAQPPEGAAEEVRAGDAAAPSLDPSRLATNNNIEIDPVPVEQPKPVEKPKPVEKPQPKPQRDKAAEQLAAASETPPPAKQDAAPTGKAYVVQLGALKNADKVNEIVSKLRGAGYRVYTSPTTPVQGKITRILVGPDASKDKLKGSLGELKQISGLSGVVMNYSAN
>NZ_CP008897.1|WP_038416461.1|3228021_3229290_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MENKSIPQATSPLAAWLSYLENLHSKTIDMGLERVSQVAARLDVLKPAPFVFTVAGTNGKGTTCRTLESVLMAAGYKVGVYSSPHLVRYTERVRVQNTELAESAHTASFAAIEAARGDTSLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRANKPAVVGEPDMPHTIADVAKEKGARLLRRGVDWQYEVQDNGWRFSDAQGVLENLPLPQVPQPNAATALAALRASGLAVSEQAIRDGIQNALLPGRFQIVSESPRLILDVAHNPHAAAYLAGRLKSLPKTGRVLAVIGMLHDKDIGGTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKGEIYSSVVSAWRAAMAEAKPEDTVLVCGSFHTVAHVMEVMDAGRTGGE

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Crispr_ID: NZ_CP008897_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008897_3

4153257-4153342

Orphan

Consensus_repeat	Method
CAGCCCCTCTCCCACAGGGAGAGGGTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008897_3

>merge|NZ_CP008897|3|4153257-4153342|CRISPRCasFinder
CAGCCCCTCTCCCACAGGGAGAGGGTAGCGTTTGTTAAGGCCTGGTGCCCTTACCCACAGCCCCTCTCCCACGGGGAGAGGGTAGC

>NZ_CP008897|3|3|4153257-4153342|CRISPRCasFinder
CAGCCCCTCTCCCACAGGGAGAGGGTAGC	GTTTGTTAAGGCCTGGTGCCCTTACCCA
CAGCCCCTCTCCCACGGGGAGAGGGTAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008897.1\|WP_017382714.1\|4160632_4162087_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP008897.1\|WP_022649554.1\|4154658_4155057_+\|DUF1043-family-protein	unknown	unknown	gnl\|CDD\|236953
NZ_CP008897.1\|WP_032622090.1\|4150712_4151210_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|225517
NZ_CP008897.1\|WP_003860438.1\|4151215_4151854_-\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP008897.1\|WP_038416806.1\|4162173_4164141_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	unknown	unknown	gnl\|CDD\|182600
NZ_CP008897.1\|WP_003860428.1\|4159142_4159613_+\|transcriptional-regulator-ArgR	unknown	unknown	gnl\|CDD\|179922
NZ_CP008897.1\|WP_003860436.1\|4152161_4152554_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP008897.1\|WP_022649549.1\|4148088_4148760_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236632
NZ_CP008897.1\|WP_003860430.1\|4156687_4157755_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	unknown	unknown	gnl\|CDD\|182820
NZ_CP008897.1\|WP_032622087.1\|4144448_4145120_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|368970
NZ_CP008897.1\|WP_038416802.1\|4145149_4145680_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
NZ_CP008897.1\|WP_022649557.1\|4160314_4160587_-\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|225346
NZ_CP008897.1\|WP_022649556.1\|4157806_4158745_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235340
NZ_CP008897.1\|WP_038416803.1\|4145676_4148064_-\|fimbrial-biogenesis-usher-protein	unknown	unknown	gnl\|CDD\|237937
NZ_CP008897.1\|WP_038416805.1\|4159991_4160255_+\|peroxide/acid-stress-response-protein-YhcN	unknown	unknown	gnl\|CDD\|369322
NZ_CP008897.1\|WP_022649555.1\|4155227_4156595_+\|serine-endoprotease-DegQ	unknown	unknown	gnl\|CDD\|182262
NZ_CP008897.1\|WP_022649551.1\|4149703_4150444_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP008897.1\|WP_022649550.1\|4148907_4149654_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP008897.1\|WP_038416804.1\|4153344_4154469_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP008897.1\|WP_003860434.1\|4152569_4152998_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703

Protein	Function_ID	Function_description	E-value
NZ_CP008897.1\|WP_017382714.1\|4160632_4162087_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP008897.1\|WP_022649554.1\|4154658_4155057_+\|DUF1043-family-protein	gnl\|CDD\|236953	PRK11677, PRK11677, DUF1043 family protein.	2.13867e-86
NZ_CP008897.1\|WP_032622090.1\|4150712_4151210_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|225517	COG2969, SspB, Stringent starvation protein B [General function prediction only].	2.70721e-84
NZ_CP008897.1\|WP_003860438.1\|4151215_4151854_-\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	7.17807e-157
NZ_CP008897.1\|WP_038416806.1\|4162173_4164141_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	gnl\|CDD\|182600	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional.	0
NZ_CP008897.1\|WP_003860428.1\|4159142_4159613_+\|transcriptional-regulator-ArgR	gnl\|CDD\|179922	PRK05066, PRK05066, transcriptional regulator ArgR.	2.58591e-114
NZ_CP008897.1\|WP_003860436.1\|4152161_4152554_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.49838e-83
NZ_CP008897.1\|WP_022649549.1\|4148088_4148760_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	1.12499e-99
NZ_CP008897.1\|WP_003860430.1\|4156687_4157755_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	gnl\|CDD\|182820	PRK10898, PRK10898, serine endoprotease DegS.	0
NZ_CP008897.1\|WP_032622087.1\|4144448_4145120_-\|DUF1120-domain-containing-protein	gnl\|CDD\|368970	pfam06551, DUF1120, Protein of unknown function (DUF1120). This family consists of several hypothetical bacterial proteins of unknown function.	1.94554e-29
NZ_CP008897.1\|WP_038416802.1\|4145149_4145680_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	9.28193e-21
NZ_CP008897.1\|WP_022649557.1\|4160314_4160587_-\|ribonuclease-inhibitor	gnl\|CDD\|225346	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription].	2.55307e-27
NZ_CP008897.1\|WP_022649556.1\|4157806_4158745_-\|malate-dehydrogenase	gnl\|CDD\|235340	PRK05086, PRK05086, malate dehydrogenase; Provisional.	0
NZ_CP008897.1\|WP_038416803.1\|4145676_4148064_-\|fimbrial-biogenesis-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
NZ_CP008897.1\|WP_038416805.1\|4159991_4160255_+\|peroxide/acid-stress-response-protein-YhcN	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	1.41906e-16
NZ_CP008897.1\|WP_022649555.1\|4155227_4156595_+\|serine-endoprotease-DegQ	gnl\|CDD\|182262	PRK10139, PRK10139, serine endoprotease DegQ.	0
NZ_CP008897.1\|WP_022649551.1\|4149703_4150444_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	8.35447e-35
NZ_CP008897.1\|WP_022649550.1\|4148907_4149654_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	5.63392e-32
NZ_CP008897.1\|WP_038416804.1\|4153344_4154469_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	0
NZ_CP008897.1\|WP_003860434.1\|4152569_4152998_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.93949e-106

>NZ_CP008897.1|WP_003860434.1|4152569_4152998_-|50S-ribosomal-protein-L13
MKTFTAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
>NZ_CP008897.1|WP_003860436.1|4152161_4152554_-|30S-ribosomal-protein-S9
MAENQYYGTGRRKSSAARVFIKPGSGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
>NZ_CP008897.1|WP_003860438.1|4151215_4151854_-|stringent-starvation-protein-A
MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPSQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMQRIEKDWYSLMNVIVNGSSSEADAARKQLREELLAIAPVFGQKPFFLSDEFSLVDCYLAPLLWRLPTLGVEFSGPGAKELKGYMTRVFERDSFLASLTEPEREMRLGRG
>NZ_CP008897.1|WP_032622090.1|4150712_4151210_-|ClpXP-protease-specificity-enhancing-factor
MEMSQLSPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEEVASLNDDGTSDERESDTVMSVIDGDKPDHHDDNDPDDDPPPRGGRPALRVVK
>NZ_CP008897.1|WP_022649551.1|4149703_4150444_-|DUF1120-domain-containing-protein
MNITFKKLFSSAAICAALAMSNAHAANDVTLKVIGNIVPGSCVPSLPNGGVVDYGTMPASTINPTGTANTLVQLGAKSITLTITCDSDTSVGVTSTDNRHDTRVGLGSAAYIENGFFDNVNANASGNAYGLGKTSAGVNIGSYVIAADPVNTTTDGVVADLIAATGTDTSNYTWVKSSTGAFAPVNSGTGQTRVFTAAASGTTTPKAFKVMNMPLRITTALQDNTVLGTGDTITLDGNATLSLVYL
>NZ_CP008897.1|WP_022649550.1|4148907_4149654_-|DUF1120-domain-containing-protein
MEFKKVLSAATVAVAFGLSAFAAQAANDVTLKVVGTINPAACTPTLPDGGVVDYGTVLNQNIAPTGATNKLVQLGQKSITLNISCESNMSVAFTSTDNRLDSRVNLSSTAFIAGSGTDKSDFSNTAGAFGLGKTTAGVSIGAYTVAINTEAVTADGANVDTLVTGSITEGQRSWEKVAPGLGYLCSLNGCTGYQKANTVATAGTTQPKAFKQLSVPLLVTSAVQDNSVLGTTDVITLDGNATISLVYL
>NZ_CP008897.1|WP_022649549.1|4148088_4148760_-|fimbria/pilus-periplasmic-chaperone
MKKILYLALLAVATKCCATGMVPETSVLLVDAQKGEASMNVKNTDSQPALLYTNIVDLPDSDKSIRLIVSQPVVRVDAGETQRMRFLLQTSKPMKYEELKRVTFEGIPPKEKGEDKVALTIRQDLPVVIHPAGLPEETQPWKFLTWNKKGDGLVINNPSDYVVRITASFKTLPSGKAGVLDKTYILPHTSIKTTLPNFSDNKVEFYPASRYGYKGDRFTTDLK
>NZ_CP008897.1|WP_038416803.1|4145676_4148064_-|fimbrial-biogenesis-usher-protein
MQQKTLLACLIGLVCSGQAMAQQMETAAINFDQETLRSLGINPDVSNYFSRKTKYLPGSVSVALKVNGDNKGNVIARFDNNGDLCFDKPFMEQAGLKVPSDYESGCYDYTGHIPSAIVEASPAQESLSLVVPADRIANSESDIGAYTSGGTAALLNYSLLSSRNEFGDGHSDYSQAMLDGGVNFDDWILRTQQLLSRSDGEFESNNSSTYLQHTFVPLKSTLRAGEVNINNSLLQGTGIYGIELSPESALQQGGSGVSVSGIANTPQARIEVRQQNVLVYSTLVPVGPFNLTDVPVRNGVSDLNVTVVETDGSQHSYVVPAALYNQSAGAPSGYHFALGRVSDSYSETPWVASLSGGWKLSERVNVNAGSIVGEDYQAVATSLDTVPLPAWLVSLQANQSNDSKDSLKGQRYTLSATWSSDPAFGMGANASVTHKSQDYRELFEALDDDFDSGNKNEYSAGLTWSVPYLGTLSTSYYQTQGYDKSDDSRFISAGWNKSFKYATISMNWQHQLSADEENEDDGDLFYVNFSIPFGASNSVSLYSRHDDHKTRYGASALGVVSDTTSWSLGAEHDQATNRDNVNGGISSNLHYTQLGLSASSDNENSRSYSGSLQGGIAVHGQGVTFSPWAIRDTFAIAALDKPVSGVRIDTPQGPVWTDFRGQAVVPSVGAWRPARVEVDTETLPKNMDIGNGTRVVTLGKGAVGHLDFTALTQRRALVNVTLANGKKLPKGIALEDSHGNYLTTSVDDGVVFFNDVEPAQQVVAKLDNGTCAFGLKLPKEANTDTFYETVNEVCK
>NZ_CP008897.1|WP_038416802.1|4145149_4145680_-|hypothetical-protein
MKALFLAVCAMAFSLHAMADCQLVSSQQKLSYGRMSAAERQAEGNTLIEMPEKQIVLNVICDEPSRIRLFLGSNVPKGHEFGFGDNGVMRITAAQATVDDRTVNLAAIHAGDPWVTNGGVREIAPALNEGIAFINGQELRGKTASVTLTIKPRFKSNHITDREVWRGNLRVRMDVQ
>NZ_CP008897.1|WP_032622087.1|4144448_4145120_-|DUF1120-domain-containing-protein
MSAASAVWATDTVNIDVDVTVDAAACTPALSNGGVADFGTRYAGSLSSSAFTQLGTRDLTLSVTCESSTGVAITARDTRASSVVVGKDKSGQEGVKFQINNGAYVRDTTRLFGLGLTSEQKPIGSYGVQINAAGVTAADESAAVQVEIAGAATKNGPWTRTTLLPLPTQQDFFYTFVQKGTDIPQPISSAVVPLQVSAAVANGLGSGQEIKLDGEAVITLVYL
>NZ_CP008897.1|WP_038416804.1|4153344_4154469_-|cell-division-protein-ZapE
MQNLSPSSRYQLALSEGTHQPDDVQREAVNRLDTIYQELLAKPADAVQSSGLKAAFGRLLGKKEPTVNAPVRGLYMWGGVGRGKTWLMDMFYQSLPGTRKQRLHFHRFMLRVHEELTALQGETDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVTTSNIPPDELYRNGLQRARFLPAIDAIKQYCDIMNVDAGVDYRLRTLTQAHLWLSPLNADTSREMDKLWLALAGAPRDNAPALEINHRPLPTLGVENQTLAVSFATLCVDARSQHDYIALSRLFHTVMLWDVPVMTPLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHMP
>NZ_CP008897.1|WP_022649554.1|4154658_4155057_+|DUF1043-family-protein
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQSLQYELEKNKAELEEYREELVSHFARSAELLDNMATDYRQLYQHMAKSSSSLLPEMTAESNPFRNRLADSEAGNDQAPVQMPRDYSDGASGLLRGGVKRD
>NZ_CP008897.1|WP_022649555.1|4155227_4156595_+|serine-endoprotease-DegQ
MKKKNQLLSALALSVGLSLSASFPASAALPSQVPGQEAIPSLAPMLEKVLPAVVSVQVEGTARQSQRIPEELKKYFGEEAPDQQAQPFEGLGSGVIIDAAKGYILTNNHVISQADKISVQLNDGREFDAKLIGGDDQSDIALLQVQNPSNLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSIGIGFAIPSNMAKTLSQQLIQFGEVKRGLLGIKGMEMSADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIVSLNDKPLSSFAELRSRIATTEPGAKVKLGLIREGKPLTVEVTLDKSTSSSASAEQISPALQGATLSDGQLKDGTKGISVTAVEKSSPAAQAGLHQDDVIVGVNRTRVQSIAEMRKVLESKPAVIALQIIRGNDTLYILLR
>NZ_CP008897.1|WP_003860430.1|4156687_4157755_+|outer-membrane-stress-sensor-serine-endopeptidase-DegS
MLLKLFRSIVIGLIVAGLLLVAMPSLRQFNKLSAPQFDSTDETPATYNQAVRRAAPAVVNVYNRGLNSSAHNQLEIRTLGSGVIMDDRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINRKRTPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPSGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPMHTQGGGIDQIQGIVVNEVAPGGPAANAGIQVNDVILSVNGTPAVSALETMDQVAEIRPGSIIPVEVMRNDKKLTIQVTIQEYPATN
>NZ_CP008897.1|WP_022649556.1|4157806_4158745_-|malate-dehydrogenase
MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDARPALQNADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKNVVECAYVEGDGEHARFFSQPLLLGKNGVEERKSIGTLSAFEQNAMEGMLDTLKKDITLGEEFVNK
>NZ_CP008897.1|WP_003860428.1|4159142_4159613_+|transcriptional-regulator-ArgR
MRSSSKQEELVKAFKALLKEEKFSSQGEIVQALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFSVKDLYEAILVLFEQEL
>NZ_CP008897.1|WP_038416805.1|4159991_4160255_+|peroxide/acid-stress-response-protein-YhcN
MKIRTTVAALSVLSALSFGAFAADTINAEQAQSRQAIGTVSVGAIGTSPMDMHEMLNKKAEEQGASSYRIIEARSGDHWHATAELYK
>NZ_CP008897.1|WP_022649557.1|4160314_4160587_-|ribonuclease-inhibitor
MKIYTFDFDEIDSQEDFYREFIRAFDLERGSVNNLDMLWDVVTGDRLPLPLEIEFTHLPEKLRRRFGALILLFDEAEEELEGQLRFNVRQ
>NZ_CP008897.1|WP_017382714.1|4160632_4162087_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MTTQALQDSILFQTGYLVNGIWKTLDTTFDVLNPATGEVVAKVAKAGKAETEEAIAAATKAFPAWRAKTAKERSTILYRWYELIIENKSWLGRLMTTEQGKPLKEAEGEVDYAASFIQWFAEQAKRANGEIIPPVKPGSRILATREPVGVVAAITPWNFPMAMLTRKLGPALAAGCTGVIKPANNTPLSAFALLTLAKQAGVPDGVLNAVAGSTSEISDAIMASHDVRKISFTGSTAVGKTLVRNSAETMKKVSMELGGNAPYIVFEDADIEAAVKGAIANKFRNAGQVCVSVNRFYIQETVYDKFVNQLADAVKALKVGNGLDEGVVVGPLIEPSAVEKVREHVEDAVAKGATVLAGGKPHELGGNFWMPTVLGDCHEGMKLAEEETFGPVAACFRFTSEDEVVMRANNTPYGLAAYFYTQNLSRVFRVSQAIESGMIGINECAVSTELGPFGGVKESGLGREGSVLGLEEFLEVKTLHIGGL
>NZ_CP008897.1|WP_038416806.1|4162173_4164141_-|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB
MGIFSIASQHIRFAVKLACAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALTIIILMIRTPLLMLIVCCIWAGFCTWVSSLVKVENSYAWGLAGYTALIIIITIQSEPLLAPQFAVERCSEIVIGIVCAIVADLLFSPRSIKQEVDRELDALIVAQYQLMQLCIKHGDSEEVDKAWSALVRRTQALEGMRSNLNMESSRWERANRRLKAINTVSLTLITQACETYLIQNTRPEVVTDTFRELFDEPVETVQDVHRQLKRMRRVIAWTGERDTPVTIYTWVGAATRYLLLKRGVISNTKISAAEEEVLQGEVVIKPESAERHHAMVNFWRTTLACILGTLFWLWTGWTSGSGAMVMIAVVTALAMRLPNPRMVAIDFLYGTIAALPIGALYFLVIIPSTQQSMLLLCISLAVMAFFIGIEVQKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQLVGCFLAMMVILLVRDNSQARTGRVLLNQFVSAAVSSLTTNTARRKQNHLPALYQQLFLLLNKFPGDVARFRLALTMIIAHQRLRNAPVPINDDLSAFHRQLRRTADHVISASSDDKRRRYFKQLLEELDIYQEKLRFWEAPPQVTEPVERLVFMLHRYQNALTDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

939395 : 955173

Streptococcus_phage(16.67%)

terminase,integrase,holin

attL 937660:937674|attR 954308:954322

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
937660:937674	attL	NA	NA	NA	NA
WP_038415406.1\|939395_940499_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.9e-60	39.9
WP_038415408.1\|940510_941764_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.2e-97	46.6
WP_038415410.1\|942104_943277_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.2e-111	50.0
WP_000189281.1\|943273_943462_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_038415413.1\|943458_944859_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.6e-211	73.2
WP_038415415.1\|944970_945504_+	hypothetical protein	NA	NA	NA	NA
WP_038415416.1\|946749_947091_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	3.7e-21	51.8
WP_038415418.1\|947087_948698_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	1.4e-224	70.1
WP_051979813.1\|948718_951124_+	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	5.0e-56	42.6
WP_038415420.1\|951166_952639_-	hypothetical protein	NA	NA	NA	NA
WP_038415422.1\|952631_953555_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.8e-162	92.8
WP_038415424.1\|953551_953914_-	GtrA family protein	B9UDL8	Salmonella_phage	3.5e-46	75.8
WP_038415426.1\|954063_954288_+\|holin	holin	A5LH82	Enterobacteria_phage	2.8e-22	71.0
WP_038415428.1\|954274_954814_+	lysozyme	H6WRZ4	Salmonella_phage	3.8e-89	86.0
954308:954322	attR	NA	NA	NA	NA
WP_038415429.1\|954810_955173_+	hypothetical protein	R9TPM9	Aeromonas_phage	2.2e-16	47.9

DBSCAN-SWA_2

2076937 : 2086285

Morganella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038415989.1\|2076937_2078401_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.9e-46	30.5
WP_003857405.1\|2078445_2078649_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	4.4e-14	56.7
WP_023300013.1\|2078936_2079368_+	universal stress protein	A0A1W6JNV4	Morganella_phage	1.5e-16	35.2
WP_003857403.1\|2079403_2080090_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_038415990.1\|2080180_2080927_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_038415991.1\|2081070_2083104_+	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	4.9e-20	21.9
WP_071881491.1\|2083718_2083946_-	hypothetical protein	NA	NA	NA	NA
WP_038415992.1\|2084506_2084725_-	cold shock domain-containing protein	A0A1W6JNX5	Morganella_phage	1.4e-18	61.2
WP_038415993.1\|2085092_2085782_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.7e-81	60.5
WP_038415994.1\|2086045_2086285_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.1e-32	91.1

DBSCAN-SWA_3

2510163 : 2519741

Cronobacter_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038416168.1\|2510163_2510835_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.0e-79	58.6
WP_038416169.1\|2510844_2511162_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.4e-22	50.0
WP_038416170.1\|2511161_2511401_-	hypothetical protein	K7P7E2	Enterobacteria_phage	3.5e-26	69.2
WP_006808936.1\|2511513_2511876_+	GtrA family protein	U5P0S6	Shigella_phage	2.6e-49	83.3
WP_038416171.1\|2511872_2512814_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	9.5e-160	91.1
WP_038416172.1\|2512810_2514292_+	hypothetical protein	NA	NA	NA	NA
WP_051979825.1\|2514321_2516346_-	hypothetical protein	F1C5A8	Cronobacter_phage	8.9e-38	59.8
WP_038416173.1\|2516404_2518882_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.2
WP_045621603.1\|2518868_2519261_-	C40 family peptidase	F1C5F2	Cronobacter_phage	3.7e-65	89.5
WP_038416174.1\|2519270_2519741_-	hypothetical protein	F1C5F1	Cronobacter_phage	1.8e-79	92.9

DBSCAN-SWA_4

2583466 : 2651254

uncultured_Caudovirales_phage(13.33%)

transposase,tRNA,integrase,plate

attL 2592971:2592985|attR 2608614:2608628

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003856666.1\|2583466_2584723_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_003856665.1\|2584924_2585536_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_032624093.1\|2585532_2586402_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003856663.1\|2586527_2587475_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	3.9e-44	37.8
WP_038416189.1\|2587599_2589279_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	6.7e-23	24.3
WP_038416190.1\|2589264_2590323_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_022648382.1\|2590443_2590719_-	stress-induced protein YchH	NA	NA	NA	NA
WP_006810922.1\|2590993_2591578_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010432886.1\|2591704_2592799_+	redox-regulated ATPase YchF	NA	NA	NA	NA
2592971:2592985	attL	NA	NA	NA	NA
WP_038416191.1\|2593013_2594171_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.8e-72	39.4
WP_038416192.1\|2595439_2596369_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	6.1e-10	28.1
WP_038416193.1\|2596415_2596868_-	DNA repair protein RadC	NA	NA	NA	NA
WP_038416194.1\|2596869_2597331_-	hypothetical protein	NA	NA	NA	NA
WP_051979839.1\|2597451_2597844_-	DUF2787 family protein	NA	NA	NA	NA
WP_022645563.1\|2598113_2598488_-	helix-turn-helix transcriptional regulator	A0A1W6JNW5	Morganella_phage	6.3e-06	40.8
WP_038416196.1\|2598678_2599206_+	hypothetical protein	NA	NA	NA	NA
WP_038416197.1\|2599220_2599580_+	hypothetical protein	NA	NA	NA	NA
WP_038416198.1\|2599610_2599946_+	hypothetical protein	NA	NA	NA	NA
WP_038416199.1\|2600316_2602116_-	hypothetical protein	NA	NA	NA	NA
WP_038416200.1\|2602108_2605081_-	histidine kinase	A0A1B5FPD5	Escherichia_phage	5.8e-78	33.2
WP_005284720.1\|2605077_2606289_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	3.9e-33	28.2
WP_130951939.1\|2606569_2607193_+	hypothetical protein	NA	NA	NA	NA
WP_088581786.1\|2607253_2608400_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_038416202.1\|2608760_2609054_-	hypothetical protein	NA	NA	NA	NA
2608614:2608628	attR	NA	NA	NA	NA
WP_038416203.1\|2609153_2609519_-	hypothetical protein	NA	NA	NA	NA
WP_038416204.1\|2609535_2609916_-	hypothetical protein	NA	NA	NA	NA
WP_038416205.1\|2609997_2610474_-	hypothetical protein	NA	NA	NA	NA
WP_038416206.1\|2611127_2611373_-	hypothetical protein	NA	NA	NA	NA
WP_038416207.1\|2611939_2612146_-	hypothetical protein	NA	NA	NA	NA
WP_023300305.1\|2614205_2614403_-	hypothetical protein	NA	NA	NA	NA
WP_038416211.1\|2615639_2615969_-	hypothetical protein	NA	NA	NA	NA
WP_051979826.1\|2615965_2616868_-	RHS repeat-associated core domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.7e-28	45.2
WP_038416213.1\|2617798_2618278_-	hypothetical protein	NA	NA	NA	NA
WP_045335064.1\|2619863_2620241_-	hypothetical protein	NA	NA	NA	NA
WP_038416215.1\|2620353_2621106_-	Appr-1-p processing protein	A0A2L1IVW3	Streptomyces_phage	8.4e-18	34.6
WP_038416216.1\|2621880_2622363_-	hypothetical protein	NA	NA	NA	NA
WP_038417044.1\|2623150_2623627_-	hypothetical protein	NA	NA	NA	NA
WP_038416218.1\|2625412_2625778_-	hypothetical protein	NA	NA	NA	NA
WP_023300298.1\|2625794_2626175_-	hypothetical protein	NA	NA	NA	NA
WP_023300299.1\|2626351_2626756_-	hypothetical protein	NA	NA	NA	NA
WP_038416219.1\|2631117_2631558_-	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_023306446.1\|2631765_2632284_-	hypothetical protein	NA	NA	NA	NA
WP_038416220.1\|2632273_2634856_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	5.6e-45	27.5
WP_048966918.1\|2634920_2635370_-	hypothetical protein	NA	NA	NA	NA
WP_038416222.1\|2635722_2636793_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	3.1e-58	43.0
WP_038416223.1\|2636789_2638124_-	membrane protein	NA	NA	NA	NA
WP_038416224.1\|2638126_2638921_-	DcrB-related protein	NA	NA	NA	NA
WP_038416225.1\|2638932_2640861_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-45	27.2
WP_038416226.1\|2640945_2641401_-	hypothetical protein	NA	NA	NA	NA
WP_023300316.1\|2641414_2642176_-	hypothetical protein	NA	NA	NA	NA
WP_038416227.1\|2642172_2643639_-	hypothetical protein	NA	NA	NA	NA
WP_038416228.1\|2643664_2645098_-	serine/threonine protein kinase	M1HKB5	Acanthocystis_turfacea_Chlorella_virus	6.1e-09	27.0
WP_038416229.1\|2645122_2647738_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	3.8e-81	31.7
WP_038416230.1\|2647776_2648820_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_023300321.1\|2648816_2650688_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_015570336.1\|2650690_2651254_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

2957130 : 2966379

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038416354.1\|2957130_2957742_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	2.7e-14	29.3
WP_038416355.1\|2957781_2958762_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_038416356.1\|2958954_2959959_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	1.1e-33	29.0
WP_038416357.1\|2960008_2961175_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.8e-112	54.2
WP_038416358.1\|2961428_2962835_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	2.3e-37	28.5
WP_023295000.1\|2962970_2963519_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
WP_038416359.1\|2963529_2964420_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	5.3e-27	31.0
WP_032609646.1\|2964432_2965299_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-110	66.3
WP_038416360.1\|2965314_2966379_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-104	54.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP008901

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9073

Burkholderia_phage(50.0%)

integrase,transposase

attL 2606:2623|attR 9790:9807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001749988.1\|2132_2702_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
2606:2623	attL	NA	NA	NA	NA
WP_000845048.1\|3094_4108_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|4263_4737_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|4957_5224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|5366_6131_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|6391_7606_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|7639_9073_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
9790:9807	attR	NA	NA	NA	NA

DBSCAN-SWA_2

22119 : 22653

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000792636.1\|22119_22653_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9

DBSCAN-SWA_3

26670 : 34524

Staphylococcus_prophage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152397.1\|26670_27990_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|28239_29121_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_001067855.1\|29645_30350_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012561167.1\|30922_31288_-	hypothetical protein	NA	NA	NA	NA
WP_012561166.1\|31287_34524_-	conjugative relaxase	U5J9B0	Bacillus_phage	2.4e-05	27.3

DBSCAN-SWA_4

46238 : 47932

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861760.1\|46238_46679_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_001749980.1\|46666_47932_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	2.2e-119	53.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP008898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP008897

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP008901

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection