CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009224	Weissella ceti strain WS105 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,csa3	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009224_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009224_1

83410-83501

Orphan

Consensus_repeat	Method
GGTGGTCGTGGTGGATACCGTGGCGGAAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009224_1

>merge|NZ_CP009224|1|83410-83501|CRISPRCasFinder
GGTGGACAAGGTGGTGGTCGTGGTGGATACCGTGGCGGAAACCGTAATGGTGGACGCGGTGGTGACCGTGGTGGAAACCGTCGTGAAGGTGG

>NZ_CP009224|1|1|83410-83501|CRISPRCasFinder
GGTGGACAAGGTGGTGGTCGTGGTGGATACCG	TGGCGGAAACCGTAATGGTGGACGCGGT
GGTGACCGTGGTGGAAACCGTCGTGAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009224.1\|WP_009495694.1\|70396_71713_+\|yycH-family-protein	unknown	unknown	gnl\|CDD\|276948
NZ_CP009224.1\|WP_038528001.1\|80595_81858_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP009224.1\|WP_009495674.1\|95922_97347_+\|dipeptidase-PepV	unknown	unknown	gnl\|CDD\|235988
NZ_CP009224.1\|WP_009495678.1\|89135_90068_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|274735
NZ_CP009224.1\|WP_009495687.1\|77962_78544_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|275360
NZ_CP009224.1\|WP_009495693.1\|71741_72548_+\|regulator-of-two-component-system,-YycI-family-protein	unknown	unknown	gnl\|CDD\|378229
NZ_CP009224.1\|WP_038528011.1\|98525_99113_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|223272
NZ_CP009224.1\|WP_009495680.1\|85728_88023_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP009224.1\|WP_038528008.1\|97486_98458_+\|DUF1002-domain-containing-protein	unknown	unknown	gnl\|CDD\|377628
NZ_CP009224.1\|WP_009495679.1\|88102_89119_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP009224.1\|WP_081895989.1\|73625_74801_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP009224.1\|WP_009495675.1\|94033_95737_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP009224.1\|WP_009495689.1\|75658_77023_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_CP009224.1\|WP_009495671.1\|99131_99512_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009224.1\|WP_038527995.1\|72594_73371_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NZ_CP009224.1\|WP_009495686.1\|78708_80322_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP009224.1\|WP_038528005.1\|90521_93422_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|227596
NZ_CP009224.1\|WP_009495690.1\|75054_75483_-\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378129
NZ_CP009224.1\|WP_009495681.1\|85308_85668_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP009224.1\|WP_009495688.1\|77052_77865_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182509

Protein	Function_ID	Function_description	E-value
NZ_CP009224.1\|WP_009495694.1\|70396_71713_+\|yycH-family-protein	gnl\|CDD\|276948	cd15787, YycH_N, N-terminal domain of YycH and similar proteins. This protein appears to be a member of a somewhat larger structural family conserved in Firmicutes. YycH plays a role in signal transduction and is found immediately downstream of the essential histidine kinase YycG. YycG forms a two-component system together with its cognate response regulator YycF. YycH functions as a modulator of YycG activity, possibly by interacting with YchI. All three molecules (YchG, YchH, and YchI) have been characterized as membrane proteins, and they may be able to form homodimers. This model describes the N-terminal domain of YycH.	3.35976e-15
NZ_CP009224.1\|WP_038528001.1\|80595_81858_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP009224.1\|WP_009495674.1\|95922_97347_+\|dipeptidase-PepV	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NZ_CP009224.1\|WP_009495678.1\|89135_90068_+\|exopolyphosphatase	gnl\|CDD\|274735	TIGR03706, exo_poly_only, exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. [Central intermediary metabolism, Phosphorus compounds].	5.26159e-77
NZ_CP009224.1\|WP_009495687.1\|77962_78544_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|275360	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit. Members of this family are the RNA polymerase delta subunit, as found in the Firmicutes and the Mollicutes. All members of the seed alignment have an extended C-terminal low-complexity region, consisting largely of Asp and Glu, that is not included in the model. Proteins giving borderline scores should be checked to confirm a similar acidic C-terminal domain. [Transcription, DNA-dependent RNA polymerase].	4.06991e-38
NZ_CP009224.1\|WP_009495693.1\|71741_72548_+\|regulator-of-two-component-system,-YycI-family-protein	gnl\|CDD\|378229	pfam09648, YycI, YycH protein. This domain is exclusively found in YycI proteins in the low GC content Gram positive species. These two domains share the same structural fold with domains two and three of YycH pfam07435. Both, YycH and YycI are always found in pair on the chromosome, downstream of the essential histidine kinase YycG. Additionally, both proteins share a function in regulating the YycG kinase with which they appear to form a ternary complex. Lastly, the two proteins always contain an N-terminal transmembrane helix and are localized to the periplasmic space as shown by PhoA fusion studies.	2.52151e-27
NZ_CP009224.1\|WP_038528011.1\|98525_99113_+\|guanylate-kinase	gnl\|CDD\|223272	COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism].	8.40605e-34
NZ_CP009224.1\|WP_009495680.1\|85728_88023_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	9.70788e-121
NZ_CP009224.1\|WP_038528008.1\|97486_98458_+\|DUF1002-domain-containing-protein	gnl\|CDD\|377628	pfam06207, DUF1002, Protein of unknown function (DUF1002). This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.	4.04418e-35
NZ_CP009224.1\|WP_009495679.1\|88102_89119_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP009224.1\|WP_081895989.1\|73625_74801_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.03278e-87
NZ_CP009224.1\|WP_009495675.1\|94033_95737_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	3.18622e-08
NZ_CP009224.1\|WP_009495689.1\|75658_77023_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.67403e-119
NZ_CP009224.1\|WP_038527995.1\|72594_73371_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.11364e-63
NZ_CP009224.1\|WP_009495686.1\|78708_80322_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP009224.1\|WP_038528005.1\|90521_93422_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|227596	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].	8.96351e-17
NZ_CP009224.1\|WP_009495690.1\|75054_75483_-\|DUF1934-domain-containing-protein	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	2.47895e-24
NZ_CP009224.1\|WP_009495681.1\|85308_85668_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	7.17015e-38
NZ_CP009224.1\|WP_009495688.1\|77052_77865_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	1.91423e-81

>NZ_CP009224.1|WP_038528001.1|80595_81858_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MKKLVIRGGRPLSGEVTIGGAKNSTVALIPAAILSEDPVRFDNVPDILDVYNLQVILESMNVKSDFTDGVLTIDPTQIVEAELPSTAIKSLRASYYFMGSLLGRFGRATVTFPGGDNIGPRPIDQHIKGFEALGATVTEENDTVHIVAENGLKGARIFLDMVSVGATMNIILAAVHAEGTTILENAAKEPEIIDLAMFLNNMGADVRGAGTDVIRIAGVEHLGSQATHTIIPDRIEAGTYLSIAAAQGEGVLVKNVIPEHMEAFISKMIEMGVELDVRDDSIYVPASKDLKPITVKTAPYPSFATDLQQPITPLLSRAQGESKIVETIYPARTRHVPELNSLGMVIESNESGLITIGHTDKMEGAVVKAAEIRAGAALVIAGLMSDGETIVEDAEHVLRGYDHIITKLTNLNADIEIVED
>NZ_CP009224.1|WP_009495686.1|78708_80322_+|CTP-synthase
MATKYIFVTGGVVSSLGKGIVAASLGRLLKNRGFKIAVQKFDPYINIDPGTMSPYQHGETFVTYDGLETDLDLGHYERFIDIAVNRYSNFTAGRIYSEVLEKERHGDYEGATVQVIPHITNMLKEKMMMAGKTTDADIVITEVGGTVGDIESLPFVEALRQMKREVGEENVFYIHTSLIPFLRAAGEAKTKPTQHSVSELRSLGIQPDMLVVRTENPISQDMRDKLALFTDVAPEAVIESLDVDILYQVVLNMQEQGMDDVVLKGLHLDAPTADMTDWTNMVDGIRNLSNKVKVALVGKYADLQDAYISVNEALRAGGYAIDTAVEINAINSELITDENVEEYLGDADAVMVPGGFGTRGTEGKLAAIKYARVNNVPFLGVCLGMQLATVEYARNVLGYEGANSIELDPETSHPIIALMNDQKAVTNIGGTLRLGLYSEMIKEGTKAFELYGQQEVQHRHRHRYEFNINFKDVFEEAGMVFSATSPDGTLMEMIELPENDFFMAAQAHPEFQSRPNHAEPLYAGLIKAALDQKMAKN
>NZ_CP009224.1|WP_009495687.1|77962_78544_+|DNA-directed-RNA-polymerase-subunit-delta
MAITQFEGQNKSELSMIEVARAILSDRHETMAFSDLLNEVQSFTGKTDDEIRARLAQFYTDLNIDGSFISLGDNVWGLRSWYPIDSIDEAVHLDLEEEEATAKPKKKRKKINAFLADVADDDDVIDYNDDDPEDDDFGAVETSKNEDEDAEAADDDSDDDSDDDFDEVAGGIGEEIGGIAPVDDDYGSGDIEK
>NZ_CP009224.1|WP_009495688.1|77052_77865_+|Cof-type-HAD-IIB-family-hydrolase
MIKLVTIDIDDTLVNSAKEITPRVKAAVQAATAAGVKIVLTTGRPITGVQAYLDELGLNNLEDQYVVTYNGAMIQTTAGTTIGGNPLNHAAYVKLADWAVEHDYYIQVESSAEAFTPSRKVNPAASGENYMINMPLNIVDVADMDPELAYVKFMFIEPAARLQEVRADLDKTDFAQEFTFVQSSTQFLEVLNQAASKGNALRTLAGHLNVDISETMAIGDQANDLTMIEAAGLGVAMGNAVPAIKAAAQEETTTQNEDGVGVALEKFVLA
>NZ_CP009224.1|WP_009495689.1|75658_77023_+|HD-domain-containing-protein
MAEVNKETIFRDPVLNSVVVKDQLILDLIGTTEFQRLRRIKQLGSANSVFHGAEHSRFSHSLGVYEIARRFSEQLAEFHATKVPGDGLWDPNERIVLLSAALLHDLGHGPYSHTFEHIFGTNHEDYTRAIITEPGTQINTVLKAYDPELPQKVADVINKTYANRQVVQLISSQIDADRMDYLLRDAYYTGATYGEFDLSRIIQMVRPYEGGIAFEEKGLYAIEDYVVSRYQMYVQVYFHPVSRSLEILLTHLLERAQYLFEEDAKSTRIDKNFISPALQVAFKHQDAIPVSEYLRLDDNVLLADISQWRFHSDAVLADLATRFIDRHPLKSIEVTDETRHLLPTLRALINDAGFEPRYYTAENDSFDQPYSDHQLQGKSPKTQIELIAQDGTLTDLSNGSAVVSTLMGRAFGDARFFFPKEMLQTDATGDLMADVYTDFQRYVRNGRLVVPTDK
>NZ_CP009224.1|WP_009495690.1|75054_75483_-|DUF1934-domain-containing-protein
MPQETAIALTAISKITQENQSETIETVTSGTATEMANATYIRYIEETSVDDTTLQTNVTIKLADDNTLQIRRSGAANARLTFDLTQPTTTHYRTAVGNFVFDIHTSALSINTTDGTCHVAYALKSGDDLIGHYDFALNYTTV
>NZ_CP009224.1|WP_081895989.1|73625_74801_+|PDZ-domain-containing-protein
MNSYETKGSGSDMKKTMKTVVIALLAGLIGGGLSVGLGAYYGVFEPKTEKVVNSSDTKVADTAVKDDSKATQAFKSVSGAIVSVINLQGSQNSDELLETASEGSGVIYKSSGRDAYVVTNNHVVDGSKKIQILMQDGTKEPAELVGTDVETDLAVLKISNKAVKDVAKFANSDQLKPGETALAIGSPLGSEYATSVTEGIISAPKREIETQAPNGQRLGKTTVIQTDAAINPGNSGGALVNLAGQVVGINSMKLSTSQSGTAVEGMGFAIPANTVVKIIEALEKDGKVTRPSLGVSLYDLSNISSVDQADVLKLPTKVKTGVVVIKTTRDGSAEKAGLKKFDVITKLNDISVSDANDLRNALYKFDVNEKITVTYYRDGKEQTVQLQLQSN
>NZ_CP009224.1|WP_038527995.1|72594_73371_+|MBL-fold-metallo-hydrolase
MLASSSTGNVTYVETPGRKVLLDAGLSGKKIEGLMQEVDRSLADVDSIFVSHEHSDHIAGVGILSRKYDMDIYANEETWAAMAPKIGKIAPEHIKICRPGEVIDLGDLEVESYSVSHDAANPQFYSFHHANKTFAALTDTGYVNDRMLSSLRNADALLFESNHDYEMLRMGSYAWSLKQRILGDKGHLSNEDGALALAEVIGSRTKNVFLGHLSQENNQQELAYLTVKGILEAKDFAVNHDFLMHNTEPLSASRLIDI
>NZ_CP009224.1|WP_009495693.1|71741_72548_+|regulator-of-two-component-system,-YycI-family-protein
MNIRKMLWTFLYLFLIVDGILLYQWVSVNDTVVDPASAKNIQQEIRMDGISFDSLDAHVPSGAYYSGEDGGSYLNKQKNQISDDWRVNVSGEKLRATPKEPVDLGDSMNSAKETLEKLVSDERNVISGEDYVYDPELSSNDNQDGLRVIVFSQKIGQETFVSSRGQIQFSFDEYFNLKSYTQTYVTGIQLLSEVPAILSERSAFFNAYQFNEIPNNSTLDWRKPGYATLMDVRGETIYIPVWTFSLTNAAGEKTMVRINALNGSLIKN
>NZ_CP009224.1|WP_009495694.1|70396_71713_+|yycH-family-protein
MNRRKWRALLKQYLLIVVLMILVAVSLMLSFGIWSSLGDRPLYIAPSESADSDKRLVSEKDIVSVYDFDNVVVNQKGKQQLVMNSRSITREVLAVMGDWQINTVTAEKLDEKQYLKLMNEKNTVLLGYPDQVVGSLVESRLNLGIGLTDDDRVDRVQLPLSGKGQVRFFNDRTRDVYTASIMTPGTSLDDIKWPKNMTDVNFEWRQNRLRMNYLSETKLKTKSYLLDESKRADVVATAFKSARVTPYLVDTPDDKVEYTDGDTRRLVLNKQSGNVEMTEYDSKTMPRAMSSNMTHAYDTLVALKQVPENMYYFEELEDGMKLSYRLYVEGLPMFMSENFDFGTISVTYESNRQTVDYSVYGIQVPLPDKNEKTITLDNTETVMEKLTDAGVDTKKVQGLTMGYSWLENDEEGYITLQPAWFVQMKDEWLPVTFYTGAV
>NZ_CP009224.1|WP_009495681.1|85308_85668_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MGKEVEVKRGDVFFINLDPVVGSEQGGQRPAVIIQNNVGNRYSPTVIVAPITARISKPKMPTHVALPAETKLTGVNRNSVILCEQIRTIDKQRLQDKIGMLPGKIVTELNKAIAVSVNV
>NZ_CP009224.1|WP_009495680.1|85728_88023_+|AAA-family-ATPase
MEEQEWQLERQRLVVVNEELATQLVDSELEYEKAHAETSAVERNYGANTSINTLEEDDSMETNAEIQQQRNIVARVTETENIMQKKLQTLKTLTGSPYFGRVNLVEDGYKEKLYIGLASLQGEDGDFLINDWRAPISGVYYNGVLGKVTYPTPVGEQEAFLEKKRQFTIEDGEIVNMFDTDVTIGDEMLQYTLGQQNDDTMHNIVATIQQEQNRIIRDTESDLLVVQGVAGSGKTSAILQRIAFLLFHAREELNSDQIVLFSPNRLFSSYIADVLPSLGERNMRQVTLHEFLSARLQGLQVQTLFERYEHADEVVQTARQAMTTAIEAPELYDCLVNYLSQVRPQEVRFADVYFDDEIWFSADEFKEVFASFPAAYSFVERMKMTQEVFLERLTEQYTELIHDEWVELGLDALSNQEYQALRLNQDGDLMDDEDTHAIHEEVAQRYVAERLRSVDDAVYNFAFVDVYAQYADFLVALGDMQYATLNADWWALKAERYSQQLELHKIDYEDAIPVLYLRDLMTGAGTNQYMQYIFVDEMQDYTQLQMLYLKHAFPRAKFTLLGDAEQALFRAVETPSELLGKYKTIFGDQRVSFVQLNKSYRSTTEIMDFAKALLPDGDEIVSFERHGAKPELSVLSMDDISEELATLIGDIQTRQQTVAVVTKTQQDAHIVGEALRRFEIQHQVIENEDRTRDEHVLVLPIYLAKGLEFDAVVGYDVSAENYPDDESVGLLYTLASRAMHELHLISKGPATPLLETVMSYITLK
>NZ_CP009224.1|WP_009495679.1|88102_89119_+|tryptophan--tRNA-ligase
MTNKKVLLTGDRPTGQLHIGHYVGSLKNRVAMQNSGDYTPFIMIADKQAFTDNARDPEKVHNSVLQVALDYLAIGIDPSKTTIFIQTSVPALSELTEYFLNLVTVARLQRNPTVKAEIQQKGFGSSIPAGFFTYPVSQAADIALFKGEVVPVGDDQEPMIEQSREIIRTFNNYYGDILVEPEAVFPPKGHGRIPGLDGDAKMSKSLGNAIYLADDEETLWTKVKSMYTDPTHLHVEDPGHVEGNMVFTYLDIFDPDTEKVAELKAQYQAGGLGDMKIKKYLFEVLNNELGPIRERRAKLAENPEAVMQMLAEGSAKARAAAEVTMQEVRDAMGINYWN
>NZ_CP009224.1|WP_009495678.1|89135_90068_+|exopolyphosphatase
MGSYLAIVDLGSNSTRMVVEELQGDGEFRELKRRKIDTRLAEGMQENAGALTTDAINRVLDALREFQDVYMQYPNVKVRGIATAAVREATNQSEFLAHVKQAINLDIQVLSGDEEAYYDYLGVVTSLPDVEDAWLLDTGGASVELADIVSQADQNLTSLPFGAVNLSEKFNLNLETVELSSVESAMKSVQQQYFDLGWIKPQGDRPVVLLGGANRVLARLDRERKGLSNSNDFHGYRMQAADIIQIFKEMVLMPCSERRVLLNKDANRADIMLGGLVPLVVLLNQTGAKEVLFSSSGVREGLLQEYKKQY
>NZ_CP009224.1|WP_038528005.1|90521_93422_+|LPXTG-cell-wall-anchor-domain-containing-protein
MINKMKISGRLMTVVVTVVLGLFVGTHVQANVIDASPFMDKVSTNVKEFHPRETGEITIEFSEKNGHTFKPGDEIVFKLPAELKGFGQNMWLDDFAQVRVLKDRVVVKFTGKIHDRKNTKIKISFGVKGSEDVARGSHRDVPLHLGTAMADYPSVLVHGYPEENNQQQGDVDFAYKGGSVNEDDARLIDWYIVVNPMNLQVADDVFIRDVLGFGHELVPGSIMIDGEPVPEKQDVLNAKKRSFDLVLSQSFVNGRGVGIFYQTRLNSVGESMKNLTNSFTADFQIKNARKDQITDSASVSNVLMSGSLGGDMVEHHANQDEEVIPDESGNLETLEDVESGNATETEVENHATENVETNQPEIHVDVREEEIPDESDKWEELEEIETNNATETEVENHATENVETNQPEIHVDVREEEKADESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENVDESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENVDESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENADESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENADESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENVDESDKLEEFDESGNLKDLEDYTTGEDDNLGVHLETHEELLDESDKLEELEEIETNNATETEVENHATENVETNQPEIHVDVREEENADESDKLEELEGIETNNATETEVENHATENVETNQPENHVDVREEENADESDKLEELEAIETNNATETEVENHATENVETNQPENHVDVREEENADESDKLEELEAIETNNATETEVENHTTENVETNQPEIHVDVREEENADESDKLEELEAIETNNTTETEVENHATENVETNQPEIHVDVREEDENVTGHEELPMTGSKSNYWIVLLGVLMMFGLLFKRRILK
>NZ_CP009224.1|WP_009495675.1|94033_95737_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKNAMITRPIWVVMAVFSFVIAMFVGVSAHASVIDSSPFVDKITSSQNVFQPREIGEISMEFSEKEGHEFQPGDELVFTLPEEFKGFANKMMLEDYAEVIVEANRVRVIFNDKVTKKNHIKGSLKFSIKATENIERGTSKEVNLDLGTKANPFPNVTVHGYPVANEGDGGNQTAPDFAYKGGNVNENDAELIDWYIVVNAGRLQVSGDTLVRDTLGKGHEFVEGSITINGQPLTAEQGKLVVNGNSFEMTLRDAAVSGNTIGINYQTRLTEDGKKQKTLSNDFKADYQILNESPTSIEGASSVKNVLMSGAIEGDEEEEKTPTEETEEIPFEEVEELEEVTPDHGNVTEEEDNMHNVDEPKKEEIHVDETEEEVPFEELEELEEVTPDHGNVTEEEDNMHNVDGSKEEEIHVDGTEENVPFEEVEELEEVTPENGNVTEQENNANESAEVTQPEVHVAPEETKPTPEVIEPKKEEKVTPKKENKTTPKVTAPKKENKTTPKTVKAIVPAKKEEKTVAPVSKKTVAKSETVKAAELPNTGSEDNKLFAVVGLVLMAFAGLLFRRRSAK
>NZ_CP009224.1|WP_009495674.1|95922_97347_+|dipeptidase-PepV
MTTEQGKWLSNSLKYEDALLTDLKEMLAIESVRDDAAATELAPLGPGPAAALDKFVALAERDGFRTGMFKNLVAYAEMGPEDAEESVAVIGHLDVMPAGDGWTKDPFTPTIEDGRLYARGASDDKGPTFTAYYAMKMLKDMGVPLKRKITFVVGIDEESDWTGMDEFFAEYGEPTMGFSPDAEFPIINGEKGNVSVVTRFSGENGSGDYLVSFAAGERPNMVPGTAIAVVKTDAAAAMVESMEAYLAAETRVTGEASVDGDQVTFKFFGRQVHGAKPETGLNAGTFLANFLQTKNFDADAAGFLALLGDKLHDDTVAEKIGAATHDDLMGDLSMNVGIQRFAANEDGFIDANFRYPQNITAAQIEADLRDALPAKFAASVAIEGHGMTPHYVPGNDPLVETLLRVYREQTGLPAGELVIGGGTFGRLLKRGVAFGAMFEGVPDTMHQADEFYPVADLTRSMAIFAQSMNDLANY
>NZ_CP009224.1|WP_038528008.1|97486_98458_+|DUF1002-domain-containing-protein
MWKKVGTIVLTTVVLGGLVGTSHVSAMATGEQQRALNKPYVVYGDAAQQKHQITQTLGVTSNYTQLTTKGSDAAYLGLQGVSDSVMISSVALAPGKAGAGTLVNIEAFEAKNNITQVTAQQYAMAATMAGVKDVIITVTANVPVSGEAALAGVYKALEADGVDLNNENTTAANDVLSSTSAAISENANDGKYAGKLTSAVTQTTSDLAADKQAGKNITINIIIDKLIVNLDKQGIKDQTGEANINAIANSIQLVNNAPISDSADFVKSANNLADTLSNSAGDLMAKAKDFANSQDAKEVANWFTINIWEPVKNFFSGLFGGNQ
>NZ_CP009224.1|WP_038528011.1|98525_99113_+|guanylate-kinase
MEREKVKNLQRRVFVVTGNTGTGKTTVTKYLNEFYEMPKVITHTTRPPREGEEDGVDYYFESNDSFDRNHFLEEVSYSGYKYGSSVEGLERAWEKNQLITIVLDPMGAVTYLQDLPEGEVVVIYLDVSERADLLERLEKRGDDVEAIAQRLNSEEYQRDLMILPGLKERAHVVMNDDWDAARSEIDEIVQSAIRV
>NZ_CP009224.1|WP_009495671.1|99131_99512_+|hypothetical-protein
MKKRTPPFITPVALLSLIIALSAGNAVVNVSTNTRNGAPVKETSEKKDTSSLSTESANEETTSNNTTSETSSAVSKSPNDISESESTVSGQSNSESSVLPSESSSSVTSSSSSSEVVADVAKKEAE

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Crispr_ID: NZ_CP009224_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009224_2

1348198-1348372

Orphan

Consensus_repeat	Method
TACCACTGTTTGCTTGTAGTTGGTTCAATCCACCAGCTAATGTTTGACCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009224_2

>merge|NZ_CP009224|2|1348198-1348372|PILER-CR
ACCACTATTGGCTTGTAGTTGGTTCAATCCACCAGCTAATGTTTGACTACCTGCATTCAACTTACCACTGTTTGCTTGTAGTTGGTTCAATCCACCAGCTAATGTTTGACCACCTGCATTCAGCTTACCACTGTTTGCTTGTAGTTGGTTCAATCCACCAGCCAATGTTTGACCA

>NZ_CP009224|2|1|1348198-1348372|PILER-CR
ACCACTATTGGCTTGTAGTTGGTTCAATCCACCAGCTAATGTTTGACTAC	CTGCATTCAACTTAC
CACTGTTTGCTTGTAGTTGGTTCAATCCACCAGCTAATGTTTGACCACCT	GCATTCAGCTTAC
CACTGTTTGCTTGTAGTTGGTTCAATCCACCAGCCAATGTTTGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009224.1\|WP_009765174.1\|1350017_1350473_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP009224.1\|WP_009765170.1\|1345368_1345854_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376324
NZ_CP009224.1\|WP_009765175.1\|1350683_1353317_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP009224.1\|WP_009765180.1\|1357099_1357312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009224.1\|WP_009765176.1\|1353577_1354639_+\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NZ_CP009224.1\|WP_009765167.1\|1340778_1341450_-\|beta-phosphoglucomutase	unknown	unknown	gnl\|CDD\|213672
NZ_CP009224.1\|WP_009765179.1\|1356225_1357107_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP009224.1\|WP_009765166.1\|1340242_1340641_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009224.1\|WP_009765164.1\|1337699_1338359_+\|NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|223140
NZ_CP009224.1\|WP_009765181.1\|1357324_1358227_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP009224.1\|WP_009765177.1\|1354714_1355680_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009224.1\|WP_009765183.1\|1359879_1361004_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP009224.1\|WP_081580100.1\|1346862_1347129_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009224.1\|WP_009765163.1\|1337096_1337315_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009224.1\|WP_009765168.1\|1341455_1343801_-\|glycoside-hydrolase-family-65-protein	unknown	unknown	gnl\|CDD\|224471
NZ_CP009224.1\|WP_009765165.1\|1338367_1340185_+\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|379196
NZ_CP009224.1\|WP_009765169.1\|1343849_1345352_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP009224.1\|WP_038528658.1\|1358365_1359712_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP009224.1\|WP_038528646.1\|1336848_1337076_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009224.1\|WP_009765178.1\|1355853_1356198_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009224.1\|WP_009765174.1\|1350017_1350473_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	9.43537e-21
NZ_CP009224.1\|WP_009765170.1\|1345368_1345854_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	7.39594e-56
NZ_CP009224.1\|WP_009765183.1\|1359879_1361004_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.49862e-61
NZ_CP009224.1\|WP_009765176.1\|1353577_1354639_+\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	3.99509e-70
NZ_CP009224.1\|WP_009765167.1\|1340778_1341450_-\|beta-phosphoglucomutase	gnl\|CDD\|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	8.36791e-81
NZ_CP009224.1\|WP_009765179.1\|1356225_1357107_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	3.34103e-31
NZ_CP009224.1\|WP_038528658.1\|1358365_1359712_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	4.50363e-178
NZ_CP009224.1\|WP_009765164.1\|1337699_1338359_+\|NAD(P)H-hydrate-epimerase	gnl\|CDD\|223140	COG0062, COG0062, Uncharacterized conserved protein [Function unknown].	4.71446e-55
NZ_CP009224.1\|WP_009765181.1\|1357324_1358227_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	5.08034e-23
NZ_CP009224.1\|WP_009765177.1\|1354714_1355680_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.44521e-16
NZ_CP009224.1\|WP_081580100.1\|1346862_1347129_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.46399e-15
NZ_CP009224.1\|WP_009765168.1\|1341455_1343801_-\|glycoside-hydrolase-family-65-protein	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	0
NZ_CP009224.1\|WP_009765165.1\|1338367_1340185_+\|FAD/NAD(P)-binding-protein	gnl\|CDD\|379196	pfam13454, NAD_binding_9, FAD-NAD(P)-binding.	1.91192e-32
NZ_CP009224.1\|WP_009765169.1\|1343849_1345352_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	6.39418e-126
NZ_CP009224.1\|WP_009765175.1\|1350683_1353317_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP009224.1|WP_081580100.1|1346862_1347129_+|helix-turn-helix-transcriptional-regulator
MNHTKLLRSLQKSLLPKSPHGMSQTSHFDKNMRYFRLQSQLRKKELAALLNVDTSTISNYERGRRRPNFDTLIQLSDIFDVTIDELLR
>NZ_CP009224.1|WP_009765170.1|1345368_1345854_-|PTS-glucose-transporter-subunit-IIA
MFGFGKKKDVVVDDKLYAPVNGTVIDLTVVPDPVFSGKLMGDGFAIEPTSARVVSPVSGEVTMVQGHALGFKRADGLEILMHMGIDTVSLDGAPFEMMVKEGDVVEAGEAVANVDWDQITAAGLPTTTMIVITNTADKLAALNVTTGDVTAGAIVGEATAN
>NZ_CP009224.1|WP_009765169.1|1343849_1345352_-|PTS-transporter-subunit-EIIC
MAKKDYSALVAEIIENVGGKDNVDNAIHCVTRLRFYLKDPSKAQTEKIEALDGVAGAVYNEQLGQYQVVIGQAVADVYEELAEQLGLSPDEEPEKTGDKKPHSIGGMFQALVGTITGSMIPIIGLLAAGGMINGLLTLMSEPTLLNWIDSGSDTYVILSSMAMAPFYFLPVLVGFSAAKQLKSDPYVVAAIGGFMIHPAVQALTTPHIAGDTIVKPEILGTLFGVPLNATYMGLSINIPNYAYTIFPIIFAAWLARPVGNFFKNHLPLALRPILQPMFTLFIVGSIVLIGVGPVISIVSSGIAALITGLINLNLAIASFIIGGLYQVLVIFGLHWMVIPILTQQIAETGQSNINMIVSFTMLAQGAGALAVFFKAKNAALKALAGSGALSAFAGVTEPAMYGVNLKYGRVFITSSIGAAFGAGLAGLLDLHMYGFSGSLIGFPNFASPADNPNNFMVFWLATAVTMIISFTLTYFFGFKNDGVVKEDVAKKNVFKDAVEK
>NZ_CP009224.1|WP_009765168.1|1341455_1343801_-|glycoside-hydrolase-family-65-protein
MAEKAWRLMYNGLETEKRAYGQESLLTLGNGYVGWRGASVFQSFDEHNYPGLYVAGVFNQTRTEVANKDVVNEDMVNLPNPQLFKLTLDDQPVVINHDTITHREAGVDFQNGLFTEELTVAVPQGQLTLRTVKAVDPKQYHMLGIQLAITADFSAQLQVESIIDGTLLNQNVARYRAFDSREFNVTEIAGDILTAKTRSTDIDIVVGAETTSDVMTFQNVEGPADMQVSTGEVTLQTNQTVQIDKLIAIGTSYELSEPLVFVQAALATHSVDKVIESSTAYWQEVWETADIQLDSDDPDMQLMIRMNIFHIRQAAQHEANKDLDASVGSRGLTGEGYRGHIFWDEIFVVPYYAANDPETARDILRYRIKRIDAAKKNAILDGEAGAMFPWQSGMYGDEQSQFIHLNTVNNEWEPDNSRLQRHVSLTIAYNIWVYTQITGDTSLLREGGLELLLETTKFWLNKAEEDADGRYHIAGVMGPDEYHEAYPGTEAGGIKDNAYTNLMLTWSLNWLLELAETQTEMFESVAHETDFGSDWLNLAKNVSKGLALEISPEGIIAQYAGYFDLEAVDFAAYEAKYGDIHRIDRLLKAEGLSPDDYQVAKQADTLMTIYNLGNRHMAKLVAQLGYDLPENWLALNKDYYLARTVHGSTTSRPVFAGIDVTLNNMDEALDYLTTAIGSDYYDIQGGTTAEGVHIGVMGETLEVIQNEFGGVMLRDGLVSIAPNLPTSWHRLAFTQKYRGTMLTFEMTPEAVTVMADAPLDVEVYGQPVSLAANTAQTFTKG
>NZ_CP009224.1|WP_009765167.1|1340778_1341450_-|beta-phosphoglucomutase
MTFENIKGFAFDMDGVLADTAKFHSIAWRQIAEEVGTTWTPELAENLKGIDRMGSLDLILTTGGMADEYDLAAREALATKKNDNYRNLISELTPDDALPGMREFLAELKAAGYKMSIASASKNAGFIVDRLGISDYFEAIVDPASVAAGKPDPAIFKAAADVLNLAPEEVIGLEDSGAGIQSINGAGEMSVGIGDADALSDADILFASTKDVTLANIKANWPK
>NZ_CP009224.1|WP_009765166.1|1340242_1340641_-|hypothetical-protein
MMIKKKWASLLPFQQNLVALVVGVFIVTLVSNIITGREVWYNMSFVIMLIGMYVTWMLLEKFTRTSVQRFVIPFVIVWVGLSISSFFDGSYCDYTTFIVTGAVAAFVAVMMMLGAKLVETQLAEHEKESNDD
>NZ_CP009224.1|WP_009765165.1|1338367_1340185_+|FAD/NAD(P)-binding-protein
MQIALIGAGPRNLILTERLITYANQSIMPVTITLFDPFPIGGRVWSPEQNPTFIANTIASHATLFSDDTIPSVYGGLRGPNWFDWLQTDAKAFIQDQNYTHAASFLETIDTITPNTYPARALFGAYSAWAFQQIKAHAKTHVNVEHRRISVSALNTTNTVFELTLDNGELFSADKVVLTPGQLPNAPTAEEINFATAAETNQLIYLPVGHPGEAALEELPAKAPVIMRGLGLSFFDYMAALTIGRGGKFIRQESGALTYEASGQEPHIIAGSRRGQLAHARGVNQKTAHVSYEPKIFTTARLTETVPASFDTFFRLIKAEMQLVYYTNLLREQPDIYSGNHANFLQTLIDSPDVEQAVKDFDFPVEYRYDWDHVFPHTTSSDALQMSQLLQLDIMDAKQGNAFGPYSASYEVVKDLRALIRKYLANGIFDGTNYEAFLTEFGPFNNTVAVGPPLERIEQLDALIQAEVMTITGPELKVSVQDNQYLAQDSTGEHWQAQALVEARLPTTNLNKVIDPLMSQLRETHAVQEYTMSREDGSTYQIPATDVNIQTLQVQTPTGQLDNFFIWGLPTEGKRWFTTFLPRPDDGDLNMRDAETIAQTMFQNS
>NZ_CP009224.1|WP_009765164.1|1337699_1338359_+|NAD(P)H-hydrate-epimerase
MVEAITAQEMQLLERYTIDEIGVSPLVLMERTAMSVIEVLGAGDFDLSNVLVLCGLGNNGGDGIAIARLLIQKGINVDLLILGDEKRASPRTLNQLNIARNYGIEVKQRASDFRSYTAIVDALFGIGLSKPVPAKLGDVIKRINSANVPVVSVDTPSGLDATTGEILGSSIRAAATVTFGYAKTGLLKNEGLKRAGNIYVKDIGVYKYPDFDAEQASAE
>NZ_CP009224.1|WP_009765163.1|1337096_1337315_+|hypothetical-protein
MKNPLIWPAAKLAFNNTSIALGWSFLIFLVASLFFPNVMMMVQKSNVFLIIFFIASFTGDFSRAYRKAKNEA
>NZ_CP009224.1|WP_038528646.1|1336848_1337076_+|hypothetical-protein
MEWRILAKTLLPQWLSLWLIQRLTLGVQDKIMFYIVVGLISTTTLTLVIHYMSYKARHTEAHQHSKLEHCSCFAD
>NZ_CP009224.1|WP_009765174.1|1350017_1350473_-|Rrf2-family-transcriptional-regulator
MQLKQSFEEAICIVLLLAAEKTRDRRMNSAEIVEKLGTSQSYIKKILGQLVHANIISSGAGKNGGFFINKALEELTLLDVYYAIEGRETMYRPKHIADRFVSDKHYIREKEADIVQIFNDAEQAYCEKLSTFKLSNILDVDGDVMKKVRQP
>NZ_CP009224.1|WP_009765175.1|1350683_1353317_-|cation-translocating-P-type-ATPase
MKEYQKPLNDVLVDYKVDPETGLDAQQVEMHRKEYGANTFVEPAKPSLARKILISLNDVATIILLVAAVISFITAYMENTGNYFESMLIIGIVIINSTLSIVQEGKAESSLAALQGLNKSKVKVLRNGKPEFIDGDDIVVGDILLIDNGSSIAADARLIDSAELQAEESPLTGESVPATKNADVVLSGDVDLGERANMVYRGTTIVNGHARAVVTGVGMQSEMGIIAGLLNSEAKTPLTPLQQRLVQLGKNISIIAVISAAFVMALGLYQGMDLMHIFLTAISLAVAVVPETLAVIVTMTLALGVQRMAKKHAIIRRLPAVETLGTTSVIASDKTGTLTQNKMTVREVWANENNHLTYLDNGMDASAENVLSIAAISTNVDVREVEGETVYDGLPTEVAIVRAMQPVKPRTELLKEWPVVDQIPFNSTKKRMTTVHQDPDGGFVAITKGAFDVLLPMVENGDKERALEINKGFGQDALRVLTITAKHFDEMPAEPTAEFYEQHLSLIGLIGIIDPPRPESAPAVAKAAAAGIKTVMITGDHLETASAIAREIGIMRDGDKGMTGAELAELSDDQLDERVKEYAVYARVTPTDKIRIVKSWQRNGAIIAMTGDGVNDAPALKAADVGISMGETGTDVARGASDIILTDDNFATIVDAVSEGRGVYVKVRKTINFLLSANMSEILVIIIAMLLGWGSPLLPVHLLFINLVSDGLPGFALSREPMLTNVMNQPPMDKDEKLFADGLGKQIGLNAILFMIVTLLAIWVGRDMTLGGMLPSAEIGQTMAFIVLSLTSIFHVFNIRSEKSLFTNKYSDNPTLVNMALLATVITLVIALIPLTAGLFGLTQLSIMHWVVVAILSLIPTVVLEVWKQIQPSFFRV
>NZ_CP009224.1|WP_009765176.1|1353577_1354639_+|tRNA-dihydrouridine-synthase
MVQAKSAYWQNIVDAAQNHPEVEGIETLPFFTLAPMEAVTDTVFRRVVAQAAAPEAFYTEFTNARSMSHPKAKFTVQGRLCFVPEEHSIPIAQLWGDRPIDFELGVADLKERGFEAVDINMGCPDSTVIKNGGGSDLIRNPEKAAELIQAAKLAGLPVSVKTRLGFNKIDTFREWLPFLLKQDVQVLTVHLRTRKEMSKVEAHYEYIDEILAMRDEISPNTLIQFNGDIKDRAQGLALAKEHPGIDGIMIGRGVFEDPYTFEDTPTEHTLEESLALLRLQLDLHDEFDKEFGPTNFQKLKRFFKIYVRGFSYASDLRVALMETKTTDDARDILAEFDEQWQERVKAEAENTPS
>NZ_CP009224.1|WP_009765177.1|1354714_1355680_-|helix-turn-helix-transcriptional-regulator
MSFDQDMKQLRKDKGMTQQDLADALHVSRQTVSTWETGKNYPSLDVLKSISDLFDVSFEHLLFGGHEEMVRKQENVAQAIDNDVKLKGRYKKTTIFLSTIISIVVIGLITLGVGYVKGIDTIDRVNPFLQYKTGYAKLPSEKYVKPFNKTNDGYWTEWFADDDMGTEWTKLTLATGMNPGIKDPYVMAYHKGSYVKEARIVPGAVISQMSKHNADTVREYFETGWGSKELKDESQKLNNQIHLGSVISQIRRLNVEKIREYFETGWNSKGWDYESQKLNNRIHLGSEISSAVFPGHMESDDEEQDNKDDFDKLEKKSSEKK
>NZ_CP009224.1|WP_009765178.1|1355853_1356198_-|hypothetical-protein
MKRKLLPLINRLFPKKVIHYLVNIVDDILNEDVEQLNLTDFERQKLREYKHALVDSKDYYLKSNLVFVQTMSPVILRGEANSEVQFLYSEILRLNPQLMSQRLGNELLLKKFFR
>NZ_CP009224.1|WP_009765179.1|1356225_1357107_-|YihY/virulence-factor-BrkB-family-protein
MDKVKAWLAPIQAKWEKFATWSHFPQFLTFVDRAQVGMVAPTVAYYTIVSLVPLIMSIGVILGFVGINVTEMNAFISQQLPDTIGDVLIPIVDSVLKGSVSVLSFSVIVVIWTASGILSTFRKIFNDIYGREQAENGLITRVMSFLWFMGFLVAAVIIGLFSSLFPAIMKNLPHVDGWIQTFAQQTWIYALVLVWIILTIFNYALPAVKIRWKSVIFGSGIAALGLSLLNAGFGLYAQFAMRNVDFYRSLGSLLALLIYFNLVATIIVMGQVFIAWFETFQTEKDAKKDSVTV
>NZ_CP009224.1|WP_009765180.1|1357099_1357312_-|hypothetical-protein
MLALKQSIFHATPRQLMFSLIVDALFLILLRPSTPLSITVYIIFLPGFDLVSAVVSYWNYVQAYKQASHG
>NZ_CP009224.1|WP_009765181.1|1357324_1358227_-|alpha/beta-hydrolase
MTERFIDLKYTHIPAKTEGITRKWLDVPYMDGERHGMDIYLPNTGEGPYPVIIDIYGGGLYRGEKSSMKLDASLKLLREHGYAVVSPNYSMLWQAPYPTQIHEVKAAIRFLRANAAEYQLDMSRVALVGESSGAQLAVTVAATANVDEMMDKTFGAYREESEKVDAVIALYGPYEFDQFEKQFAEEGITSKFPETGTAISFQGQLFGERAPKDVPELVEAYNPATYFAAGMPAILGFAGTADPVVPYHQTVNMMTSARAVLGEDKTPYHLIDGGVHGPANYMTPEWTAVKADFLAQELNQ
>NZ_CP009224.1|WP_038528658.1|1358365_1359712_-|amino-acid-permease
MNGEETKLERGLSARHVEMIALGGTIGTGLFLGAGRSISTAGPAILLVYIITGLFMFWMMRALGELLLTDPDKPTFVAFIEKYLGKRTGFVIGWTYWLGWITIAMAEVTAISAYMKYWFPDIPGWIWAIVFLAVLFSINIFAVGAFGETEFWFSMIKIVAILAMIATGAIMIATRAETSVGVTSLSNLWTHGFFANNGSGILSAFQMVFFAFLGIEFVGMTAAESKDPDYVIPKAINSIIIRILIFYIGSLIAIMSIQPWMNYNANESPFVQVFAGIGITAAAGIINFVVLTAAASALNSAIFTTGRMLFALTSQGESKSRFGRLNKRALPMNALVASTLLIGLAAVINFLFPSEAFEVITSVASAAFIGIYATLVFAHVKYRRTDDFKNGEKKFLMPLAPFSDYLTLGFMGMVFLVLLFTPATQVTTIFAIIWFVVMALLSRRYASK
>NZ_CP009224.1|WP_009765183.1|1359879_1361004_-|AI-2E-family-transporter
MQNVTHSKTFYWTLEILAIATLFWVLSQLGFILTPMGQFIGGVFVPLLISGFLYYLMNPIVELICKVPLGKYKVPRGISITIVMLLFLGIIVFAVGSFIPTLAEQVSRLLASVPQYVHKTQMWFDSLSRETWFRDYVQAIDMSKLQQTIEKYGETVVMGTASGFGSVLGTVTSVTIAAITIPVMTIYMLADGKKFVPFAQRVMPKRFSGDVAELLGRLNKTLSRYISGQALEMLFVGVFTTIGYMVIGQRYALLLGVIAGITNMIPYVGPYIGYIPALFIGLMQGPMEAVSITIVVLIVQQIDSNILYPRIIGSTLSIHPLTILVILLAAGNIAGIPGMILAVPLYAVVRTIVVYIAEVWKVDRQSKAEESITK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009224_1	1.1\|83442\|28\|NZ_CP009224\|CRISPRCasFinder	83442-83469	28	KY499642	Vibrio phage pVa-21, complete genome	167841-167868	6	0.786

1. spacer 1.1|83442|28|NZ_CP009224|CRISPRCasFinder matches to KY499642 (Vibrio phage pVa-21, complete genome) position: , mismatch: 6, identity: 0.786

tggcggaaaccgtaatggtggacgcggt	CRISPR spacer
atgcggaaaccgcaatggtggaagccat	Protospacer
  **********.********* ** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

561247 : 568593

Caulobacter_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009765412.1\|561247_563110_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.4e-51	35.8
WP_009765411.1\|563120_564254_+	RNA polymerase sigma factor RpoD	M4SMP8	Cyanophage	3.8e-38	34.8
WP_009765410.1\|564476_565700_+	MFS transporter	A0A2K5B2B5	Erysipelothrix_phage	8.6e-12	20.0
WP_009765409.1\|565799_566510_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-33	32.8
WP_009765408.1\|566520_567894_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	1.8e-18	28.8
WP_009765407.1\|567948_568593_+	uridine kinase	A0A1V0SAA3	Catovirus	3.3e-31	36.5

DBSCAN-SWA_2

688472 : 707466

Enterococcus_phage(29.41%)

tail,capsid,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038528259.1\|688472_691961_-	hypothetical protein	E3W8G7	Leuconostoc_phage	3.8e-145	59.7
WP_038528262.1\|692028_692691_-	hypothetical protein	E3W8G6	Leuconostoc_phage	7.7e-23	47.2
WP_038528265.1\|692690_695747_-	tape measure protein	A0A1S5S8I3	Streptococcus_phage	3.9e-29	52.1
WP_038528268.1\|695749_696037_-	hypothetical protein	NA	NA	NA	NA
WP_038528880.1\|696051_696408_-	hypothetical protein	D2J068	Enterococcus_phage	5.5e-20	40.4
WP_051956885.1\|696534_697170_-	hypothetical protein	D2J067	Enterococcus_phage	7.6e-36	46.5
WP_038528270.1\|697171_697537_-	hypothetical protein	D2J066	Enterococcus_phage	2.0e-25	42.1
WP_038528273.1\|697533_697944_-	HK97 gp10 family phage protein	A0A1P8BL43	Lactococcus_phage	3.1e-22	50.8
WP_038528276.1\|697933_698269_-\|head,tail	head-tail adaptor protein	A0A1P8BL24	Lactococcus_phage	4.4e-19	44.3
WP_038528279.1\|698273_698804_-	hypothetical protein	A0A1P8BL66	Lactococcus_phage	1.4e-43	45.2
WP_038528282.1\|698806_699703_-	hypothetical protein	A0A1P8VVM7	Streptococcus_phage	1.4e-75	51.4
WP_038528285.1\|699717_699942_-	hypothetical protein	NA	NA	NA	NA
WP_038528288.1\|699953_700541_-	hypothetical protein	A0A1P8BL29	Lactococcus_phage	3.6e-16	52.5
WP_051956887.1\|700681_702196_-\|capsid	minor capsid protein	D2J057	Enterococcus_phage	2.9e-49	42.9
WP_038528292.1\|702208_703621_-\|portal	phage portal protein	D2J056	Enterococcus_phage	1.7e-152	56.3
WP_038528295.1\|704880_705237_-	hypothetical protein	I3VYX1	Thermoanaerobacterium_phage	9.8e-09	35.1
WP_038528298.1\|705638_706040_-	hypothetical protein	Q8SDG5	Lactococcus_phage	2.6e-05	32.6
WP_038528301.1\|706057_706372_-	VRR-NUC domain-containing protein	A0A1W6JQP1	Staphylococcus_phage	7.0e-27	56.4
WP_038528303.1\|706368_706629_-	hypothetical protein	NA	NA	NA	NA
WP_038528306.1\|706618_706933_-	hypothetical protein	NA	NA	NA	NA
WP_158501064.1\|706936_707089_-	hypothetical protein	NA	NA	NA	NA
WP_051956889.1\|707091_707466_-	hypothetical protein	A0A1W6JQL4	Staphylococcus_phage	7.9e-09	33.6

DBSCAN-SWA_3

711088 : 722620

Lactobacillus_phage(44.44%)

integrase

attL 719700:719714|attR 730928:730942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051956891.1\|711088_712411_-	hypothetical protein	A0A0A1EL11	Lactobacillus_phage	6.5e-106	49.5
WP_038528332.1\|712403_713213_-	hypothetical protein	A0A1B0Y4T1	Lactobacillus_phage	3.2e-63	47.7
WP_038528335.1\|713234_713582_-	hypothetical protein	NA	NA	NA	NA
WP_038528338.1\|713539_713749_-	hypothetical protein	NA	NA	NA	NA
WP_038528341.1\|713774_714527_-	AAA family ATPase	A0A1B0YEB5	Lactobacillus_phage	1.5e-51	47.0
WP_038528343.1\|714523_715921_-	DEAD/DEAH box helicase	A0A0A1ENT0	Lactobacillus_phage	2.8e-152	58.1
WP_038528346.1\|715944_716181_-	hypothetical protein	NA	NA	NA	NA
WP_038528349.1\|716167_716359_-	hypothetical protein	NA	NA	NA	NA
WP_038528352.1\|716462_716843_-	hypothetical protein	NA	NA	NA	NA
WP_158501068.1\|716895_717054_-	hypothetical protein	NA	NA	NA	NA
WP_038528355.1\|717194_717467_-	hypothetical protein	NA	NA	NA	NA
WP_038528358.1\|717477_717951_-	siphovirus Gp157 family protein	W8CYU7	Bacillus_phage	3.9e-21	41.8
WP_158501069.1\|717980_718145_-	hypothetical protein	NA	NA	NA	NA
WP_051956893.1\|718271_718943_-	Rha family transcriptional regulator	W8CYS3	Bacillus_phage	3.5e-15	42.9
WP_038528361.1\|719194_719395_-	hypothetical protein	NA	NA	NA	NA
WP_038528364.1\|719405_719636_-	transcriptional regulator	E3W8C0	Leuconostoc_phage	1.9e-05	39.2
719700:719714	attL	NA	NA	NA	NA
WP_038528367.1\|719903_720257_+	helix-turn-helix transcriptional regulator	A0A1S5SDY5	Streptococcus_phage	3.7e-08	32.5
WP_038528370.1\|720257_720686_+	hypothetical protein	NA	NA	NA	NA
WP_038528373.1\|720724_720922_+	hypothetical protein	NA	NA	NA	NA
WP_144443364.1\|720939_721434_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_038528378.1\|721570_722620_+\|integrase	site-specific integrase	Q9ZXG6	Leuconostoc_phage	6.4e-40	31.2
730928:730942	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009224

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection