CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008920	Providencia stuartii strain ATCC 33672 chromosome, complete genome	6 crisprs	csa3,DEDDh,cas3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,cas14j	1	27	6	0
NZ_CP008919	Providencia stuartii strain ATCC 33672 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008920_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_1

67536-68043

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTACAC	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTACAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTACAC	CRT

8 spacers

csa3

The CRISPR arrays of NZ_CP008920_1

>merge|NZ_CP008920|1|67536-68043|PILER-CR,CRISPRCasFinder,CRT
TTTTTAGGCTACCTATACGGCAGTACACTTTGTGTTCCACAATCAGAATGCAGACATGCCTTTCTAAGCTGCCTATACGGCAGTACACATATTTCAGGGTGGGTACCGAGCAAACCGCAATTTCTAAGCTGCCTATACGGCAGTACACTAATCCGATGCTGGTTATTACGCTTGCAGAGTTTTCTAAGCTGCCTATACGGCAGTACACACGCGAGTCACATCTTCTGCGCTATCTGTTGCTTTCTAAGCTGCCTATACGGCAGTACACATGTCATAATTAATTCATTAGTGACATGATTTTTTCTAAGCTGCCTATACGGCAGTACACTAAGTCATAAAGCGCTTTTTGATTCTCTTTGATTTCTAAGCTGCCTATACGGCAGTACACATTATTTTCGTGTTCGTGTATTCTCAAATATCTTTCTAAGCTGCCTATACGGCAGTACACATTTTGCTATTCAAGCACCACCTGCGCCGATATTTCTAAGCTGCCTATACGGCAGTACAC

>NZ_CP008920|1|1|67536-68043|PILER-CR
TTTTTAGGCTACCTATACGGCAGTACAC	TTTGTGTTCCACAATCAGAATGCAGACATGCC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATATTTCAGGGTGGGTACCGAGCAAACCGCAA
TTTCTAAGCTGCCTATACGGCAGTACAC	TAATCCGATGCTGGTTATTACGCTTGCAGAGT
TTTCTAAGCTGCCTATACGGCAGTACAC	ACGCGAGTCACATCTTCTGCGCTATCTGTTGC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATGTCATAATTAATTCATTAGTGACATGATTT
TTTCTAAGCTGCCTATACGGCAGTACAC	TAAGTCATAAAGCGCTTTTTGATTCTCTTTGA
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTATTTTCGTGTTCGTGTATTCTCAAATATC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTTTGCTATTCAAGCACCACCTGCGCCGATA
TTTCTAAGCTGCCTATACGGCAGTACAC

>NZ_CP008920|1|1|67536-68043|CRISPRCasFinder
TTTTTAGGCTACCTATACGGCAGTACAC	TTTGTGTTCCACAATCAGAATGCAGACATGCC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATATTTCAGGGTGGGTACCGAGCAAACCGCAA
TTTCTAAGCTGCCTATACGGCAGTACAC	TAATCCGATGCTGGTTATTACGCTTGCAGAGT
TTTCTAAGCTGCCTATACGGCAGTACAC	ACGCGAGTCACATCTTCTGCGCTATCTGTTGC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATGTCATAATTAATTCATTAGTGACATGATTT
TTTCTAAGCTGCCTATACGGCAGTACAC	TAAGTCATAAAGCGCTTTTTGATTCTCTTTGA
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTATTTTCGTGTTCGTGTATTCTCAAATATC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTTTGCTATTCAAGCACCACCTGCGCCGATA
TTTCTAAGCTGCCTATACGGCAGTACAC

>NZ_CP008920|1|1|67536-68043|CRT
TTTTTAGGCTACCTATACGGCAGTACAC	TTTGTGTTCCACAATCAGAATGCAGACATGCC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATATTTCAGGGTGGGTACCGAGCAAACCGCAA
TTTCTAAGCTGCCTATACGGCAGTACAC	TAATCCGATGCTGGTTATTACGCTTGCAGAGT
TTTCTAAGCTGCCTATACGGCAGTACAC	ACGCGAGTCACATCTTCTGCGCTATCTGTTGC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATGTCATAATTAATTCATTAGTGACATGATTT
TTTCTAAGCTGCCTATACGGCAGTACAC	TAAGTCATAAAGCGCTTTTTGATTCTCTTTGA
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTATTTTCGTGTTCGTGTATTCTCAAATATC
TTTCTAAGCTGCCTATACGGCAGTACAC	ATTTTGCTATTCAAGCACCACCTGCGCCGATA
TTTCTAAGCTGCCTATACGGCAGTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_040132266.1\|57202_58633_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP008920.1\|WP_040132271.1\|64916_65345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040133356.1\|70345_72097_-\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NZ_CP008920.1\|WP_040132262.1\|52791_54672_+\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|236675
NZ_CP008920.1\|WP_014656465.1\|63422_63995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004922311.1\|73477_74335_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP008920.1\|WP_040132264.1\|54664_55762_+\|heme-lyase-NrfEFG-subunit-NrfF	unknown	unknown	gnl\|CDD\|182415
NZ_CP008920.1\|WP_113742863.1\|68420_68537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288524
NZ_CP008920.1\|WP_040132281.1\|69000_70290_-\|arsenic-transporter	unknown	unknown	gnl\|CDD\|185342
NZ_CP008920.1\|WP_040132277.1\|67034_67382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004922246.1\|55997_56414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004922269.1\|60948_62364_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP008920.1\|WP_014656528.1\|76197_78798_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP008920.1\|WP_040132275.1\|66713_67034_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040132283.1\|75029_76172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040132278.1\|68564_68990_-\|glutaredoxin-dependent-arsenate-reductase	unknown	unknown	gnl\|CDD\|182200
NZ_CP008920.1\|WP_004922304.1\|72523_72859_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|236654
NZ_CP008920.1\|WP_004922301.1\|72110_72476_-\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP008920.1\|WP_014656527.1\|74352_74565_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP008920.1\|WP_040132273.1\|65512_66436_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181200

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_040132266.1\|57202_58633_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP008920.1\|WP_004922311.1\|73477_74335_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP008920.1\|WP_040132264.1\|54664_55762_+\|heme-lyase-NrfEFG-subunit-NrfF	gnl\|CDD\|182415	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional.	2.52668e-77
NZ_CP008920.1\|WP_113742863.1\|68420_68537_+\|hypothetical-protein	gnl\|CDD\|288524	pfam11682, zinc_ribbon_11, Probable zinc-ribbon. This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.	0.00972157
NZ_CP008920.1\|WP_040132262.1\|52791_54672_+\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|236675	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional.	0
NZ_CP008920.1\|WP_040133356.1\|70345_72097_-\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NZ_CP008920.1\|WP_004922269.1\|60948_62364_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.62431e-43
NZ_CP008920.1\|WP_014656528.1\|76197_78798_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP008920.1\|WP_040132281.1\|69000_70290_-\|arsenic-transporter	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
NZ_CP008920.1\|WP_040132278.1\|68564_68990_-\|glutaredoxin-dependent-arsenate-reductase	gnl\|CDD\|182200	PRK10026, PRK10026, arsenate reductase (glutaredoxin).	2.68563e-86
NZ_CP008920.1\|WP_004922304.1\|72523_72859_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|236654	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional.	2.98221e-44
NZ_CP008920.1\|WP_004922301.1\|72110_72476_-\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	7.15471e-61
NZ_CP008920.1\|WP_014656527.1\|74352_74565_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	5.318e-32
NZ_CP008920.1\|WP_040132273.1\|65512_66436_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181200	PRK08025, PRK08025, kdo(2)-lipid IV(A) palmitoleoyltransferase.	3.31019e-165

>NZ_CP008920.1|WP_040132277.1|67034_67382_-|hypothetical-protein
MKLLNKTIYTLIVAFISTAAMAEECIGDSTYQACTRSSTNAQGDNIIESYDTDGNSYSITSGSRDYANGSSEVFSVDSEGNEYSIKSWCDSSGCHTSDSEGNTCTITNTGEMIGC
>NZ_CP008920.1|WP_040132275.1|66713_67034_-|hypothetical-protein
MIKKILIIFIVLISAISVFAYNKLTIFTVQPIGAIPDGVTVVMWKKGDMRFFESPDGLCMQRVGKVNLLCRMTMLGSAIEKDNIIIRLPYSEYAYLKSTNGRKFDR
>NZ_CP008920.1|WP_040132273.1|65512_66436_-|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MYAKNLFSLKLLHPKYATTWLGIVILFLLVQLPYKWLVRLGAFLGVNSKYFIKRRVSIIKRNLELCFPNKNRKEIDDLVIENLRSLGIALFETGIAWFWSDKRIKKLFQVKGISNYQEAIAKNKGVIIVGVHFMSLELGGRIMGLCFPVNAMYRPHNNKAMEYIQTKGRCRSGKGMIDRKNLRFMVQELKSGKAIWFAPDQDFGRKGTVFAPFFSVKNTSTSKGTSTLAQLSHSPTLTVTLLRNRNGISYDLVLGKEIVNYPTSDALHDAATINSVLEKEIMKAPEQYLWAHRRFKTRPDGEPSLYI
>NZ_CP008920.1|WP_040132271.1|64916_65345_+|hypothetical-protein
MPISVNSYLKYYPSFLLSDLSLTLDSYKQGTNMGVSIYYSATKKTPFNFEEKNTFETMVNQLNQAFPYKEDAETLYFYEEPSDQFLLQGSTKLPLDDESILLESIDYWLDCLSQLTLAFSTAQWSVSIEDSEATWVDDHWEM
>NZ_CP008920.1|WP_014656465.1|63422_63995_-|hypothetical-protein
MKKHILSITVLSAATLLVTGCSSNNDMWGEFANILSDANPVVQESEEWEAYSIKTTQQGVTYASASSADQQFVSKKMDAEYADALYRVSSPFARSDKTKEQLAKDNQGYRFKYNEIMVVKDKKTANTIGYCVNYDSDQIENGQVKPVKEKDKIRNHFIYVDKVKPLSVMTVGSDFTKVMCGEEFYNKYKK
>NZ_CP008920.1|WP_004922269.1|60948_62364_-|FAD-binding-oxidoreductase
MAITRRKFLIGGAVVAVAGGAGILTPMLTREGRFVPGTPRHGFVEGTAGPLPKQADVVVIGAGILGIMTAINLVERGLSVVIVEKGNIAGEQSSRFYGQVITYKMPDETFLLHHIGKQRWREMNAKVGVDTSYRTQGRVEVPLDEEDLDHVRKWIDTRSKNVGSDIPFKTRIIEGDELNQRLRGATSNWTIAGFEEDSGSLDAEIATFVMAEYAKKIGVKIYTNCAARGLETQAGAISDVVTEKGAIKTSRVVVAGGVWSRLFMQNLNVDVPTLPAYQSQQLISGSPTAPGGNVALPGNIFFREQADGTYATSPRVIVAPVVKESFIYGYKYLPLLSMPDFPVHISLNEQLINSFTQPTHWELDEVSPFEKNRNMTALPDIPELNSSLEKLKAEFPAFKDSKLIDQWSGAMAIAPDENPIISQVNEYPGLVINTATGWGMTESPVSSEITADLLLGKEPSLDVKPFSLYRF
>NZ_CP008920.1|WP_040132266.1|57202_58633_-|6-phospho-beta-glucosidase
MPGSLFPQDFLWGGAIAANQAEGACFEGGKGLSIADVIPYGANRHPVKMGIEKRFKLRDDEYYPSHLAIDFYHQYKRDIALMAEMGFSVFRTSIAWSRLFPRGDEVTPNPEGIAYYLDLFNECKKYHIEPLVTLCHFDVPMHLVTEYGSWRDRKMIDFFVTYAKACFEAFDGIVKYWLTFNEINLLLHTPFSSSGLVFEAGENSEQVKYQAAHHQLVASALATKIAHEVNAQNQVGCMLAGGGYYPWSPKPEDVWAAMEKDRENLFFIDVQVRGYYPAYAQRVFRENKVTLLVTEEDEQILKNTVDFVSFSYYASRCASADMGDGTNPSINAAQSLSSPYIKQSEWGWGIDPLGLRLTANMLYDRYQKPLFLVENGLGAHDKLNEDGEIIDDYRIDYHRSHIQALGDAIADGIPIMGYISWGCIDLVSASTGEMSKRYGFVYVDKDDQGAGSLTRIRKKSFWWYKKVIASHGNDLC
>NZ_CP008920.1|WP_004922246.1|55997_56414_+|hypothetical-protein
MKKNIFSYLIIALIAGGSFVAGMMANYTPDLDIVKKSQKAVEDFLTFPETAEYKNVHYYEIRQTLDHGILGYVCGEVLVFKSENSFGYKRFLVKTYMHQDGRNVVSIPLIERSGNIFPNDNFNIIWDQFCREQSDKKE
>NZ_CP008920.1|WP_040132264.1|54664_55762_+|heme-lyase-NrfEFG-subunit-NrfF
MNKLLHYVVLTLLLMATNIAKADIVDTWQFATAEQQTTSLQIAAQLRCPQCQNQNLLESNAPTAVSMRHQVYKMVAEGKTEAEIRSYMTERYGDFVLYNPPLHMGTIVLWSLPFIGFIFVIALLYYLIKKRASVPRTNQHNSTEATITPTSKLSIQLTHEIPSQHAEVKRNDTLSYYAIHLCVALLLLLTIAGYFFLPRFSATYHEYQRISDPLHILTPLQQQQSDLIRLQNNIRQSPQNGDLWAILGEYYLYQNSYDNALIAYNQALKYTGENAQLYSAIATVLYYQAGQQMTEDTMQVIEHALSIDKHEVTALMLLASDAFMHANYEKAISLWRQLLDSNSPRINRSQLIEAINMATIMKNNH
>NZ_CP008920.1|WP_040132262.1|52791_54672_+|heme-lyase-CcmF/NrfE-family-subunit
MELILPEIGFISLLLTLCITNFHALFGLVSTYKHTQKSRLLGVYWSTLQFIFLVIAFLCLTISFIQSDFSVVYVAQHSHRLSPLLIKIAAVWGGHEGSLLLWVLLLSTWHLLFAWRYRKQDHPFFALTLAILAAMSAALLWFIVLYSDPFMRIFPPAIEGRDLNPMLQHWGLILHPPLLYLGYSGLMVVTSCVLASLIAGNFSQTIAWVCWRWAVPSWCILTMGITLGSWWAYSELGWGGWWFWDPVENASLLPWLAATALLHSLAASRKQGSYRHWSMILAIVTFILSLLGTLIVRSGILVSVHAFALDNVRAIPLFLLFISMSIVALLIYGCKAKPAASASKRALTLREIYLQMTLILFVVVLFIVLVGTLYPMLYSLLGWGKISVGAPYFNQTLLPFGLIMLMVIGAWAVGSLKSSTRSFFRWRLSVSIIAAVIALLLRWSDAKFIASATAIMVGLLLLLWLRPLNEIQKRLASLLAHTGVIIFATGIAFSTVSKQEISANMTVNHTVSLAGYQFNFKQLQLDTQSNYTTEKALIAVYQKDTFITYLETERRFYTARQQIMIEPGMHWGWMRNWYAVLGEKTGNNRYALRFYVQDGIQWIWGGAFIMCIGLFIGWFKGRSQHE
>NZ_CP008920.1|WP_113742863.1|68420_68537_+|hypothetical-protein
MDWFCVPCHDDFTNNQKYCPTCHKGIWSIPTKNVADKH
>NZ_CP008920.1|WP_040132278.1|68564_68990_-|glutaredoxin-dependent-arsenate-reductase
MNEITIYHNPNCGTSRNTLAMIRNSGIEPAIIHYLETPPTRDVLVKLIADMKITVRALLRKNVEPYEQLNLEQDSYTDDQLIDFMLQYPILINRPIVVTPLGVKLCRPSEVVLDILPNQQQNEFIKEDGEVVVDKQGCRIK
>NZ_CP008920.1|WP_040132281.1|69000_70290_-|arsenic-transporter
MFIAALIFVLTITFVIWQPKGLGIGWSATVGAVLALIFGVISFQDIPIVWNIVWNATATFVAVIIISLLLDESGFFEWAALHVAKWGGGKGRLLFSYIVLLGATVAALFANDGAALILTPIVIAMLLALGFNKGTMLAFVMAAGFIADTASLPLIVSNLVNIVSADFFNIGFTEYASIMVPVDIAAIIATLVMLHWFFRKDIPKQYDMTKLSEPALAIKDMTTFKAGWLVLVLLLIGFFVLEPLGIPVSAIAAIGALILWVIAARGHTINTKKVLRGAPWQIVIFSLGMYLVVYGLRNAGLTDYLSETLNYLADKGLWVATLGTGFITAFLSSIMNNMPTVLIGALSIEGSEASGVIQQAMVYANVIGADLGPKITPIGSLATLLWLHVLSQKNMTITWGYYFKTGIIMTIPVLIVTLVALVLRLSLLN
>NZ_CP008920.1|WP_040133356.1|70345_72097_-|arsenical-pump-driving-ATPase
MNFLDSTPNYLFFTGKGGVGKTSISCATAIKLAEEGKKVLLVSTDPASNVGQVFSQSIGNNIQPITLVPNLFAIEIDPQAAAEEYRNKIINPIKESLPEAVIQSITEQLSGACTTEIAAFDEFTGLLTNTEITRQFDHIIFDTAPTGHTIRLLQLPSAWSDFINDNPDGATCLGPMSGLEKQREQYSMAVQALSDNSLTRLVLVARPQSAALREVARTYSELSSLGIKNQQLIINGVFPETAMTENDKLSHALYSREQAALKSLPEALRSLPIDILYLQNINMVGVDALKQLLSNDMPQFSTITPTKQPISLPSLSELVGEISQQQHGLIMLMGKGGVGKTTIAASIAVKLAEKGLDVHLTTSDPAAHVESTLDGVLPNLQVSRIDPIAETERYRNYVLETKGKDLDAEGRALLEEDLRSPCTEEIAVFQAFSRIIRDAGKRFVVMDTAPTGHTLLLLDATGAYHKEIAKKMGKKGHFLTPMMQLQDPERTKVIITTLAETTPVLEAENLQNDLIRADIHPWAWVINNSLSITETTSPLLLSRTEQEVVQIEKVASTLAKRVAIVPLLETEPVGISALSQLAE
>NZ_CP008920.1|WP_004922301.1|72110_72476_-|arsenite-efflux-transporter-metallochaperone-ArsD
MKKLEVFDPALCCSTGVCGTEVDQALVDFATDADWLKKQGANVKRFNLAQEPMAFVNNIKVKTFLETAGAESLPLFILDGEIVLTGRYPKRHELARWFGIRLNIEKVETVKSCCGNDKTCC
>NZ_CP008920.1|WP_004922304.1|72523_72859_-|metalloregulator-ArsR/SmtB-family-transcription-factor
MEPLQLFKILGDQTRLDIVLLLKASGELCVCDIYTALNLSQPKTSRHLAMLREAGLLLDSKHGKWVHYRLSPALLPWVKSIIDVTYATEKNRVADLLKSLEKKESANRCSI
>NZ_CP008920.1|WP_004922311.1|73477_74335_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MLAKIIDGKTIAQTIRQEVAQKVQQRIEQGKRAPGLAVILVGANPASQIYVGSKRRACEEVGFLSRSYDLPDTTTEAELLKLIDDLNQDTEIDGILVQLPLPAGIDNVKVIERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLDRYGINTYGLNAVIIGASNIVGRPMSLELLLAGCTTTVTHRFTKDLEQHVRNADLLVVAVGKPNFIPGEWVKPGAIVIDVGINRLENGKVTGDVDFDEASKYASWITPVPGGVGPMTVATLIQNTLQACEEYHDI
>NZ_CP008920.1|WP_014656527.1|74352_74565_+|ribosome-associated-protein-YbcJ
MDIFRLEGHPHIELCDLLKIEGWAESGAMAKAMIAEGLVQVDGVIETRKRCKIAAGKVVSMGDQKIKVQD
>NZ_CP008920.1|WP_040132283.1|75029_76172_-|hypothetical-protein
MKYYYFKYKTMMSSVFNKYMTSTVIAFGFIHPVALAANFNAMPGQEIISLGNVNAEITLTKISAVNSSSAIRADGFGINTSSSKVDCLPSSYEMTVGKMKGYRVDQDIIIGFRSTNATGVASVGAGASTSGPFHDVTVKGAWDNYGNYTPSPVQNASTMWCGSAWPEATQHQWNTNRKNNKASIRGELFLYVGNNAKPGSYTLPSLYLIKSASSGDLVSHLIFPSGTVTVSYPPCSISTPTEVSFDTKKGLPVINPTSSISVNCGANDGRAFQIAISGQPVAPSTAVGNHAISLHYSDGTIGGLVRGYIGSNAAADAVGCVDRTSSIPFSVNNEGLNFMQIGAQTASSSQSQPLVWSLCPNKTEKPGKATGAAQLDIIFK
>NZ_CP008920.1|WP_014656528.1|76197_78798_-|fimbrial-biogenesis-outer-membrane-usher-protein
MNRNKHTLPACVSPAKFTWHPIALCLMLSIHSATAEDYFDPAFLQAMGETDQVDLSVYSKKGSIAPGEYLVSVYINKVGIGQLPITFKENKQGVVSPVLTPELLEKHGVNIKQLPTTKDLPLDYPIDNLPALIPDASTHFDISILELEISIPQIAMKSSHTEVLDPDLLDYGIPALIANYNLSYGHTENSSRYSSDRKTDNFFATVRAGLNAGAWRLRSTITHSQIKTDGGDNQDNNQHYTRFTNTYLYRELFPLRSVLLVGENNTGSDVFDSVPFRGIKLSSSEEMLPSQLRGYAPPIEGVANSNARVTVRQNGNIIYETYVAPGAFYINDIQEAGLSGDYDVTITEANGTERKFIVPYSSLPVMLRPGGWKYEVTVGRYDGNVTNQSREADFLLGTAVYGLPYDTTVYGGVLAAEDYQAANVGTGISLGNVGAISLDITASAAKLNHNSRKTGQSYRLRYSKSMMNTGTSVDLTALRYSTRNYYNFSEFNSEGYQLEDGVYPWSMQRRRSSFQTQVSQRMGEWGTIYLRATRDDYWGSSRTQTGGSIGYSNSYKGITYGSNFTIDRVKDDNGNWPENRQISFNISIPFSVFGYSDSLQSIYSTSYYTRDNNGKSQIQTGINGSLMDGDFTYSASQSWENKDGANSSNINAGYQGSKGSITAGYSYSSQMKTFNMNANGGMLLHSGGLTLTKNMGESVALVYLPDAPNVSINNGSSYSDWRGYGIAPYLSDYKRNSISIDPTTLPDDVDVAQTNINIYPSKGAVVPVKFATKRGYQVLMTLIKNNVNVPFGAIASLQNTSDSYSSIVGDSGLVYLTGLPEKGKLLVKWGESTEKQCEVRFDLANIELEADQPIRQVTYTCTPVKL

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Crispr_ID: NZ_CP008920_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_2

2822915-2823303

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

6 spacers

cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP008920_2

>merge|NZ_CP008920|2|2822915-2823303|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACGTATCTCTTGCGGGTTTCTTTTTAAAATCACGTTCACTGCCGTATAGGCAGCTTAGAAAAAGCGAAATAACGTTGAGCCGATGATTGAAAAGTTCACTGCCGTATAGGCAGCTTAGAAATTATCTTCGTTTCTGTGTGCTACCTGAGTACCGTTCACTGCCGTATAGGCAGCTTAGAAATTTTATTCGTCCAGCCCTCGATTACAACCAACGTTCACTGCCGTATAGGCAGCTTAGAAATTACCTCTTTTCGCATCACCGCAGGTTAGAAAGTTCACTGCCGTATAGGCAGCTTAGAAAAAAGGAATTGCGTGATAGATGGCAAACTCCCCTGTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|2|2|2822915-2823303|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTATCTCTTGCGGGTTTCTTTTTAAAATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGCGAAATAACGTTGAGCCGATGATTGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTATCTTCGTTTCTGTGTGCTACCTGAGTACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTTATTCGTCCAGCCCTCGATTACAACCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACCTCTTTTCGCATCACCGCAGGTTAGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAAGGAATTGCGTGATAGATGGCAAACTCCCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|2|2|2822915-2823303|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTATCTCTTGCGGGTTTCTTTTTAAAATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGCGAAATAACGTTGAGCCGATGATTGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTATCTTCGTTTCTGTGTGCTACCTGAGTACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTTATTCGTCCAGCCCTCGATTACAACCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACCTCTTTTCGCATCACCGCAGGTTAGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAAGGAATTGCGTGATAGATGGCAAACTCCCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|2|2|2822915-2823303|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTATCTCTTGCGGGTTTCTTTTTAAAATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGCGAAATAACGTTGAGCCGATGATTGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTATCTTCGTTTCTGTGTGCTACCTGAGTACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTTATTCGTCCAGCCCTCGATTACAACCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACCTCTTTTCGCATCACCGCAGGTTAGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAAGGAATTGCGTGATAGATGGCAAACTCCCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_040133005.1\|2813163_2814003_+\|basal-body-rod-modification-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NZ_CP008920.1\|WP_004918612.1\|2816044_2816827_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP008920.1\|WP_040133006.1\|2817725_2818829_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP008920.1\|WP_014658062.1\|2820053_2821694_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP008920.1\|WP_004918626.1\|2823574_2823955_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP008920.1\|WP_040133008.1\|2827759_2828737_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP008920.1\|WP_040133009.1\|2828733_2832282_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP008920.1\|WP_004918619.1\|2818828_2819809_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP008920.1\|WP_040133010.1\|2832432_2833704_+\|CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP008920.1\|WP_004918643.1\|2834650_2835676_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP008920.1\|WP_014658060.1\|2816952_2817684_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP008920.1\|WP_004918608.1\|2814033_2815254_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP008920.1\|WP_014658063.1\|2821721_2822657_+\|flagellar-hook-filament-junction-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP008920.1\|WP_071881669.1\|2824154_2824328_-\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP008920.1\|WP_014658070.1\|2833700_2834648_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP008920.1\|WP_004918654.1\|2838947_2839730_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP008920.1\|WP_004918605.1\|2812746_2813151_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP008920.1\|WP_014658066.1\|2826273_2826456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918610.1\|2815269_2816025_+\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|183642
NZ_CP008920.1\|WP_040133011.1\|2835684_2836320_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_040133005.1\|2813163_2814003_+\|basal-body-rod-modification-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	1.47764e-46
NZ_CP008920.1\|WP_004918612.1\|2816044_2816827_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	9.58869e-155
NZ_CP008920.1\|WP_040133006.1\|2817725_2818829_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP008920.1\|WP_014658062.1\|2820053_2821694_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP008920.1\|WP_004918626.1\|2823574_2823955_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.47902e-35
NZ_CP008920.1\|WP_040133008.1\|2827759_2828737_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.17748e-177
NZ_CP008920.1\|WP_040133009.1\|2828733_2832282_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP008920.1\|WP_004918619.1\|2818828_2819809_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	5.3169e-144
NZ_CP008920.1\|WP_040133010.1\|2832432_2833704_+\|CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.20738e-121
NZ_CP008920.1\|WP_004918643.1\|2834650_2835676_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP008920.1\|WP_014658060.1\|2816952_2817684_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	8.44649e-98
NZ_CP008920.1\|WP_004918608.1\|2814033_2815254_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	2.17475e-153
NZ_CP008920.1\|WP_014658063.1\|2821721_2822657_+\|flagellar-hook-filament-junction-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	5.50916e-99
NZ_CP008920.1\|WP_071881669.1\|2824154_2824328_-\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	1.22613e-05
NZ_CP008920.1\|WP_014658070.1\|2833700_2834648_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	2.02062e-132
NZ_CP008920.1\|WP_004918654.1\|2838947_2839730_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.64892e-68
NZ_CP008920.1\|WP_004918605.1\|2812746_2813151_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	2.38262e-72
NZ_CP008920.1\|WP_004918610.1\|2815269_2816025_+\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	2.0995e-111
NZ_CP008920.1\|WP_040133011.1\|2835684_2836320_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.15939e-53

>NZ_CP008920.1|WP_014658063.1|2821721_2822657_+|flagellar-hook-filament-junction-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRVNQSENRNQQYVASRGFAKTGMLLQMSVLTQMTEVTTQIDTTIIQASNQGSLSDSDRMSLAEQLSGLKDQLVALGNTTDGNGRYIFAGYKSDKPPFEVNAAGDVIYKGGDKAIMQNVSSDREMTTYFTGAQVFATDSNNVVNVFKALNEGIAALKTPQDQATQSEKEAAQKALDSANTAVKSALDKISNIESKQGLQLQEIDQLNFLADTRSIQNSQRISELLDTNWTGVTTDYYKEMAMFQASQDIFKDLNSMSLFGGR
>NZ_CP008920.1|WP_014658062.1|2820053_2821694_+|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIEDISSNIGSFFTALDAASSDASDKTLIDVFLGKSNALVGQFKEADRRLQEMERDVNRQIETKVKDINTYAEKIAGLNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLIGVKVIEQNGNYNVTFANGLPLVTGENANRLEAVPSSQDDSRFSIGFVGANGQVREIADDAFRGGELSGVLRSRKEVIDPAYQKLNKLALVFASKFNEVHKKGFDANGNPGKDFFEIGKGNVVSNTFNRGKAEFDFNYSDVSQVTGNNYEMRFDGKEWNVTRLPEGFAVTVDRSTPDTLKFDGIELKITQNNAQSGDSFLVKPVNGVINGMQSLISDAANFAAAGEKGSGPGDNDNLKELVKLQDQKLIGGTSTFSDYYATIVNDVGNQTKQAQIDSETQNKMTESFYQQEQAVSGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP008920.1|WP_004918619.1|2818828_2819809_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNDMQLMQGAAFDLQSLSHLKRELTDSPDKGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTQMQGDTSSEDVPVKPFNMDDRLIDSLPNQAMAQIVRRFAPLGDALSSSMQKVKSLSLNSQNFISRLIEPAKVASQKSGISHLLVLAQAALESGWGRREILTAEGKTSHNLFGIKAGKSWQGPVTNIMTTEVINGKSIKMRDDFRVYGSYEEAIADYINLLTENPRYRDVKHAQSPEVAARRLHQAGYATDPNYADKLITLINQIRGYQTADKAASRAVQAYTVDLSDIF
>NZ_CP008920.1|WP_040133006.1|2817725_2818829_+|flagellar-basal-body-P-ring-protein-FlgI
MNKLVTLLLTLLCLFATSAYSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLSNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARAGQAVDVVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASAGGSSIKVNQLAGGRITGGATIERELPTSFGQNGIINLQLNDDSFTLAQDISDAINRLRGAGTATPLDSRTVQLRVPMNNSDQVRFLAQIQELNVRTPIAEAKVILNSRTGSVVINRSVTLESCAVAHGSLSVMVERQTQVSQPNTPFAGGQTVVTRNTNIGVREQGGALQKVNASVQLNQVIQALNALGATPTDLMSILQAMESAGCLRAKLEII
>NZ_CP008920.1|WP_014658060.1|2816952_2817684_+|flagellar-basal-body-L-ring-protein-FlgH
MTKNGFTPEIKGDSFFSPSKVLVIALVLATSGCAYVKPRPLVDTQTSALPTAPTAPAPNGAIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRSGKTGFLAAILPGFMQGWLGGSNTELDVKGSSDFSGKGGANANNTFRGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGADNNVSSTQVADARIEYVGDGYINESQTMGWLQRFFLNVSPY
>NZ_CP008920.1|WP_004918612.1|2816044_2816827_+|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQTSLPSGLQLGTGSRPVATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGALQPNQDGQLVTSSGYQIVPAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>NZ_CP008920.1|WP_004918610.1|2815269_2816025_+|flagellar-hook-basal-body-complex-protein
MDHVIYTAMGGARHALENQAIVSNNIANVSTSGFKAQLAAMRAVPIHGDSEQTRTLVVASTPGADMSQGPLNYTGRPMDVALNDKHFLAVELADGSEAYTRNGNIQISPDGELVIGERRLQGDGGPINVPPNAELTIGEDGTVTALLATDPPTMLGQIGRLKVVEAQPQDLIRGEDGLFHLSPQAAAANGNGLAQSERASVTSGVIEGSNVNAAEAMVSMIANARYFEMQMKVVRSADENAQKANQLLAVS
>NZ_CP008920.1|WP_004918608.1|2814033_2815254_+|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQDQNGDIFYSRDGQFIRDKSGNLVNNQGMTVTGYPAGLDENGNVVVQSGGVPQGLNIPTDMMDAQASDLAKLTINLNSEDKVKSKPFDINNPDDTGSYNFSTTMTAFDSQGNTHEISVYFVKTDDNKWTAYAKDAGDKVAKKLGDMEFDGNGRLNSPTNAVFAFDYQGLNGANNGTLQIDLNKTRQQKVSESSVSAIDVNGYPAGEYTNFKVEDNGLIVANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWAPSNASGNPMDGVPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNLR
>NZ_CP008920.1|WP_040133005.1|2813163_2814003_+|basal-body-rod-modification-protein-FlgD
MGIAATMYDSLDNTTAGPEPLKSNIPNKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEIVLAPLKTQNDSDNTAISKPTNPLPDDETSRALSAANDNGGNDDASQGDYISSPFGFFLPKMADSVEITIRDKNRAIIRTISYDTEVKPDIYDMSWDGRDDNGKLVADTNSKYFFDVRAVSNGAEIEVTKLGYTRVNGVTPGTDAPLLDVGIGQSVPLSSIFKVYPSS
>NZ_CP008920.1|WP_004918605.1|2812746_2813151_+|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDGEPFRAKQVVFQMTPQGRNGVGGVRVSQLIEDPTPPRMEYKPGHPLADEKGYVRMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ
>NZ_CP008920.1|WP_004918626.1|2823574_2823955_-|DUF805-domain-containing-protein
MNWYLEVIKNNYANFNGRARRKEYWIFSLINFIIIIPLYLVVLASTNDYTGDINGLGIVALVLLMIYCVAILIPSLAVTVRRLHDIDKSGWWYLLTFIPFGGLVIFVFTCLDGTPGNNRFGSNPKE
>NZ_CP008920.1|WP_071881669.1|2824154_2824328_-|DinI-like-family-protein
MVTIKIRFNENKKNQLPISTLEALKNEVTKRLSAKYSDLRVDINWGTQDNVSIDGLG
>NZ_CP008920.1|WP_014658066.1|2826273_2826456_+|hypothetical-protein
MTGGIVTGALISYALYKLDDEFGISESIINALKSKRPNKPVPLGHPQQMFTTWGLCSRGF
>NZ_CP008920.1|WP_040133008.1|2827759_2828737_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPADLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQSEYRPTEYLQDWMRFWFDDKKRLAAAKTLQRSRISYLQKTWQSSRELQNEGFIYNDTLIQNALETFHTRTEAADDPQTLLLTEAQLTKALYKYAANNTGQKNFTRQHQAMDKANAFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWSFICAKEGASEQEFRQQILQSFIDNHALDFLFDTVKTIALQTGSEQQIQEPKL
>NZ_CP008920.1|WP_040133009.1|2828733_2832282_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEDGLQTVKKMLRQSASRNTAVSCHWIRSRSRSQLLWVVGNRNKFNSQGHVPVNRTEKSFLGSEFENDWKYLSLIAAVARLAALFHDWGKASRLFQDKLNPAVKMPFKGDPVRHEWVSSILFSSLVKIHSAEGSEEKWLDALIHQEWDESQLQQCVNDNCLASNPLAELPDAAALLTWLILTHHKLPFLDEQELCNWQDKAINLHTQLLAKIKQSWGYRNGNDDAQFQQRIKMCFEFPNGLLSNSKAWVQAVQQAATDLKNQLPLFQQAMADGSWRVIAHYARLCLMLGDHNYSSQGNDPQWHSDIALYANTHKIRNINNIPQVTFKQKLDEHLVKVAETARDIAETLPYFESEPPFASDVPKLAYDKNSTGKFSWQEDAVNSIYQYRKERNDDIKGYFIVNMASTGCGKTRANAKIMQALSEDKQSLRYILALGLRTLTLQTGDEYKDQNKIGLGERDLAVLIGSKAVAQLHQNAKENENASEASNDTSSHQTNSESNDLKPHQTGSESQEMLFDENEEMLRWDENKWSGILPEEVLSTVLTREKDRALLYAPVLACTIDHIIGATETIRGGRYILPCLRLMSSDLVIDEVDDFIEADSAAIARLIHMVGLLGRKVMISSATITPDTALAYFHAYQSGWHAHAKSRQQSLEIGCMWIDEGEYDPVKEKCKSSTLAATLVVNDENTPYFYQQYHGKFIDKRAKVLGQQPARRKALIVPTPKDNTQESQQCYFNHILNAVLTQHHYHAFLDKRTGIQVSFGVIRVANILPCIDLTRFLLECECPDEVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEKSGEEPDALNDAIIRQHLAQVSAEGKAKHLIFILVATPVEEVGRDHDFDWAVVEPSSWRSIIQIAGRVRRHREGEVAQPNMALLQYNLKGFEEGNDNPFSRPGYENRYINLGLSTHDLYELVDEQQLNKSVDAIPRIQKQANYESKKHTNLACLEHAAIKYTFKIEHIFPPKRAENSATSSRRTTRRSNHQTIPSNAASHIWGYTHGNWWMTAISQQIASFRSGAPSFRLVLEILPRGEMQFSEYHRENGWVNVGAQNGIHFIEFPESMKKRLWLVRDYAKSLESQTEEAEQITSLSRFYGEITFLKCLNVHDGYRYDDQMGVYPIKR
>NZ_CP008920.1|WP_040133010.1|2832432_2833704_+|CRISPR-associated-protein-Csy1
MLDPAIEAFFAERKEGWLKKNLKASMSEAEVQQIEQQCEDTFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGYVSAIIANAKQANDGFLRSSNVAVEPDALGNAAALDVYKFLTLQMQDGATLLAHIEAETQLAKTLLTLNNESYQEIRNGFLAMSATDDSVVTSSKIKQVYFPVWLDDEDYHLLSILTPSGLLFEMRRRIDDIRFSEQTKTLRDLKRKGEYSEVGFKEIYGLTTIGFGGTKPQNISVLNNQNAGKAHLLLSLPPVLNIRETRLPKTNFFTDAINPWHTKETFQAFHGLINLPKDKRGNRFIEYRDNRIQEYVDYIIVMTWKVRRALEQENITLPNKISNYQKTWLFPDNQEQRDNTDDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNAIVDVVARYKELLR
>NZ_CP008920.1|WP_014658070.1|2833700_2834648_+|type-I-F-CRISPR-associated-protein-Csy2
MNNSMNLIKLSHLKVHNANALSSPFTIGFPAMTAWLGFMHALELKLRKIGFLELQLESIAVISHECNLQTYKGPSDFVSSIVGTGNPLDKEGNRSAFIEEARCHLDVSLLIEFSDRNDEYGNVLTDKSIVDRIYELIPMMKLAGGDILSVDLPQMHYLPANDDMGKYRRSLFNSLMPGYALIERRDLMVSAMEDGQDAMDALLDYVTVHNQCVEVDSQNESKNKHYEWKVQRKTAGWIVPIATGYQGISPLGQAKNQRDPNVPHRFAESLVTLGQFVMVNKIGHPNEILWKYSNNLENSLYLCQQVESKYFTSGE
>NZ_CP008920.1|WP_004918643.1|2834650_2835676_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWDHKSQCTPLVLQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNASFKESYTKAAKEYIAREGFRELGRRYAHNIANARFLWRNRVGAEKIEVEVKVLNKGQEQQWTFDATQYSIRSFEKQDDKVNELGAKIAAALANSEGALLLEITTYAQLGQSQEVYPSEELVLDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYNDEVNSAGAIAIEPYGAVTNLGRAYRTPSDKQDFYTHFDKWARGEKLARLEDEHYVMAVLVRGGVFGESDK
>NZ_CP008920.1|WP_040133011.1|2835684_2836320_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDYYQEITLLPDSTIPLDFLWQKVYQQIHIALVENKSEAGDSEVAVAFPEYGSVGFRLGKKLRLLAKTEKTLTQLNISHWLMRLADYVHIKSIQTVPEHATPISYVRQHVKGAKRFELDRYKKAQLYSVKSGQPIEVCLSAIKEPQTRSRLPFIWMESQQTKSKTEGDGHRPFPLFIRCVAAKEAKAGTFNCYGLSQSMGKGEEVATVPHF
>NZ_CP008920.1|WP_004918654.1|2838947_2839730_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLLGG

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Crispr_ID: NZ_CP008920_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_3

2836461-2837509

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGNATAGGCAGCTTAGAAA	CRT

17 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP008920_3

>merge|NZ_CP008920|3|2836461-2837509|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAAGGTCAGAAAAAAATCACTCATGACAGCAATCCGTTCACTGCCGTATAGGCAGCTTAGAAACGTTACCGAACTACATAATGGATATTAGATATGTTCACTGCCGCATAGGCAGCTTAGAAATTACTCAGAGCATCTTGAAGCAGGGCGTTTTGGTTCACTGCCGCATAGGCAGCTTAGAAATGTATTAGCATGAGTAATACATATCCGATTATGTTCACTGCCGCATAGGCAGCTTAGAAATACATCATAGAACATGCAGAACTACTTGCTGAGTTCACTGCCGCATAGGCAGCTTAGAAAGATCAGAGCTGAAATAAGGAAGAAAGCAAGGGGTTCACTGCCGCATAGGCAGCTTAGAAAAATGCTAAATAAATCACTAGGGGGGCTATTCCCGTTCACTGCCGCATAGGCAGCTTAGAAAATTAGTACCAATTGTGTTAGCAAGACCAGTCAGTTCACTGCCGCATAGGCAGCTTAGAAATTGGCACAGGCGCTTCCTTCGTATTTGCTGGCGTTCACTGCCGCATAGGCAGCTTAGAAAATCAACCTGTACAGCTGGGAATAAAAACGTATGTTCACTGCCGCATAGGCAGCTTAGAAATTCATTTATTCGCTTCTGCTCCATTAAATACAGTTCACTGCCGCATAGGCAGCTTAGAAATGTATTTGCATTCATACCGGCATATTTCATTGGTTCACTGCCGCATAGGCAGCTTAGAAAATCTTTATCCCACTTGCGTAGGACGACGACTTGTTCACTGCCGCATAGGCAGCTTAGAAAACGATTTGAACGTGTGATGAAACAGTATGAATGTTCACTGCCGTATAGGCAGCTTAGAAATTAACTCTCTGTATGGAACCTAATTTATTTTCGTTCACTGCCGTATAGGCAGCTTAGAAACGCCCACTCTCACCGTCCAGCGAAGCCATAAGGTTCACTGCCGTATAGGCAGCTTAGAAAATCTCCCCGAGCAAAATAGGCACAGGGCGCCCGTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|3|3|2836461-2837509|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGTCAGAAAAAAATCACTCATGACAGCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTTACCGAACTACATAATGGATATTAGATAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTACTCAGAGCATCTTGAAGCAGGGCGTTTTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTAGCATGAGTAATACATATCCGATTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TACATCATAGAACATGCAGAACTACTTGCTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATCAGAGCTGAAATAAGGAAGAAAGCAAGGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	AATGCTAAATAAATCACTAGGGGGGCTATTCCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATTAGTACCAATTGTGTTAGCAAGACCAGTCA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCAACCTGTACAGCTGGGAATAAAAACGTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTCATTTATTCGCTTCTGCTCCATTAAATACA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTTGCATTCATACCGGCATATTTCATTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCTTTATCCCACTTGCGTAGGACGACGACTT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGATTTGAACGTGTGATGAAACAGTATGAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTAACTCTCTGTATGGAACCTAATTTATTTTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCCCACTCTCACCGTCCAGCGAAGCCATAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTCCCCGAGCAAAATAGGCACAGGGCGCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|3|3|2836461-2837509|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGTCAGAAAAAAATCACTCATGACAGCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTTACCGAACTACATAATGGATATTAGATAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTACTCAGAGCATCTTGAAGCAGGGCGTTTTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTAGCATGAGTAATACATATCCGATTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TACATCATAGAACATGCAGAACTACTTGCTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATCAGAGCTGAAATAAGGAAGAAAGCAAGGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	AATGCTAAATAAATCACTAGGGGGGCTATTCCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATTAGTACCAATTGTGTTAGCAAGACCAGTCA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCAACCTGTACAGCTGGGAATAAAAACGTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTCATTTATTCGCTTCTGCTCCATTAAATACA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTTGCATTCATACCGGCATATTTCATTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCTTTATCCCACTTGCGTAGGACGACGACTT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGATTTGAACGTGTGATGAAACAGTATGAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTAACTCTCTGTATGGAACCTAATTTATTTTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCCCACTCTCACCGTCCAGCGAAGCCATAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTCCCCGAGCAAAATAGGCACAGGGCGCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|3|3|2836461-2837509|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGTCAGAAAAAAATCACTCATGACAGCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGTTACCGAACTACATAATGGATATTAGATAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTACTCAGAGCATCTTGAAGCAGGGCGTTTTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTAGCATGAGTAATACATATCCGATTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TACATCATAGAACATGCAGAACTACTTGCTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATCAGAGCTGAAATAAGGAAGAAAGCAAGGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	AATGCTAAATAAATCACTAGGGGGGCTATTCCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATTAGTACCAATTGTGTTAGCAAGACCAGTCA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCAACCTGTACAGCTGGGAATAAAAACGTAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTCATTTATTCGCTTCTGCTCCATTAAATACA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGTATTTGCATTCATACCGGCATATTTCATTG
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATCTTTATCCCACTTGCGTAGGACGACGACTT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGATTTGAACGTGTGATGAAACAGTATGAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTAACTCTCTGTATGGAACCTAATTTATTTTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCCCACTCTCACCGTCCAGCGAAGCCATAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTCCCCGAGCAAAATAGGCACAGGGCGCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_014658072.1\|2840011_2840755_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP008920.1\|WP_014658066.1\|2826273_2826456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918680.1\|2845106_2846471_-\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP008920.1\|WP_040133011.1\|2835684_2836320_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP008920.1\|WP_014658063.1\|2821721_2822657_+\|flagellar-hook-filament-junction-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP008920.1\|WP_004918654.1\|2838947_2839730_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP008920.1\|WP_040133009.1\|2828733_2832282_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP008920.1\|WP_004918676.1\|2844652_2845096_-\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP008920.1\|WP_004918672.1\|2842642_2843125_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP008920.1\|WP_004918669.1\|2841629_2842637_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP008920.1\|WP_004918626.1\|2823574_2823955_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP008920.1\|WP_004918643.1\|2834650_2835676_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP008920.1\|WP_040133008.1\|2827759_2828737_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP008920.1\|WP_040133010.1\|2832432_2833704_+\|CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP008920.1\|WP_071881669.1\|2824154_2824328_-\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP008920.1\|WP_004918662.1\|2840767_2841196_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP008920.1\|WP_004918656.1\|2839732_2840002_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP008920.1\|WP_004918665.1\|2841220_2841637_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP008920.1\|WP_040133012.1\|2843290_2844652_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP008920.1\|WP_014658070.1\|2833700_2834648_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_014658072.1\|2840011_2840755_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	6.0386e-124
NZ_CP008920.1\|WP_004918669.1\|2841629_2842637_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	9.30166e-164
NZ_CP008920.1\|WP_040133011.1\|2835684_2836320_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.15939e-53
NZ_CP008920.1\|WP_014658063.1\|2821721_2822657_+\|flagellar-hook-filament-junction-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	5.50916e-99
NZ_CP008920.1\|WP_004918654.1\|2838947_2839730_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.64892e-68
NZ_CP008920.1\|WP_040133009.1\|2828733_2832282_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP008920.1\|WP_004918676.1\|2844652_2845096_-\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	7.31435e-35
NZ_CP008920.1\|WP_004918672.1\|2842642_2843125_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.92257e-60
NZ_CP008920.1\|WP_040133012.1\|2843290_2844652_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	3.04661e-28
NZ_CP008920.1\|WP_004918626.1\|2823574_2823955_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.47902e-35
NZ_CP008920.1\|WP_004918643.1\|2834650_2835676_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP008920.1\|WP_040133008.1\|2827759_2828737_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.17748e-177
NZ_CP008920.1\|WP_040133010.1\|2832432_2833704_+\|CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.20738e-121
NZ_CP008920.1\|WP_071881669.1\|2824154_2824328_-\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	1.22613e-05
NZ_CP008920.1\|WP_004918662.1\|2840767_2841196_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	1.92193e-30
NZ_CP008920.1\|WP_004918656.1\|2839732_2840002_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	7.28415e-33
NZ_CP008920.1\|WP_004918665.1\|2841220_2841637_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.57005e-76
NZ_CP008920.1\|WP_004918680.1\|2845106_2846471_-\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP008920.1\|WP_014658070.1\|2833700_2834648_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	2.02062e-132

>NZ_CP008920.1|WP_040133011.1|2835684_2836320_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDYYQEITLLPDSTIPLDFLWQKVYQQIHIALVENKSEAGDSEVAVAFPEYGSVGFRLGKKLRLLAKTEKTLTQLNISHWLMRLADYVHIKSIQTVPEHATPISYVRQHVKGAKRFELDRYKKAQLYSVKSGQPIEVCLSAIKEPQTRSRLPFIWMESQQTKSKTEGDGHRPFPLFIRCVAAKEAKAGTFNCYGLSQSMGKGEEVATVPHF
>NZ_CP008920.1|WP_004918643.1|2834650_2835676_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWDHKSQCTPLVLQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNASFKESYTKAAKEYIAREGFRELGRRYAHNIANARFLWRNRVGAEKIEVEVKVLNKGQEQQWTFDATQYSIRSFEKQDDKVNELGAKIAAALANSEGALLLEITTYAQLGQSQEVYPSEELVLDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYNDEVNSAGAIAIEPYGAVTNLGRAYRTPSDKQDFYTHFDKWARGEKLARLEDEHYVMAVLVRGGVFGESDK
>NZ_CP008920.1|WP_014658070.1|2833700_2834648_+|type-I-F-CRISPR-associated-protein-Csy2
MNNSMNLIKLSHLKVHNANALSSPFTIGFPAMTAWLGFMHALELKLRKIGFLELQLESIAVISHECNLQTYKGPSDFVSSIVGTGNPLDKEGNRSAFIEEARCHLDVSLLIEFSDRNDEYGNVLTDKSIVDRIYELIPMMKLAGGDILSVDLPQMHYLPANDDMGKYRRSLFNSLMPGYALIERRDLMVSAMEDGQDAMDALLDYVTVHNQCVEVDSQNESKNKHYEWKVQRKTAGWIVPIATGYQGISPLGQAKNQRDPNVPHRFAESLVTLGQFVMVNKIGHPNEILWKYSNNLENSLYLCQQVESKYFTSGE
>NZ_CP008920.1|WP_040133010.1|2832432_2833704_+|CRISPR-associated-protein-Csy1
MLDPAIEAFFAERKEGWLKKNLKASMSEAEVQQIEQQCEDTFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGYVSAIIANAKQANDGFLRSSNVAVEPDALGNAAALDVYKFLTLQMQDGATLLAHIEAETQLAKTLLTLNNESYQEIRNGFLAMSATDDSVVTSSKIKQVYFPVWLDDEDYHLLSILTPSGLLFEMRRRIDDIRFSEQTKTLRDLKRKGEYSEVGFKEIYGLTTIGFGGTKPQNISVLNNQNAGKAHLLLSLPPVLNIRETRLPKTNFFTDAINPWHTKETFQAFHGLINLPKDKRGNRFIEYRDNRIQEYVDYIIVMTWKVRRALEQENITLPNKISNYQKTWLFPDNQEQRDNTDDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNAIVDVVARYKELLR
>NZ_CP008920.1|WP_040133009.1|2828733_2832282_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEDGLQTVKKMLRQSASRNTAVSCHWIRSRSRSQLLWVVGNRNKFNSQGHVPVNRTEKSFLGSEFENDWKYLSLIAAVARLAALFHDWGKASRLFQDKLNPAVKMPFKGDPVRHEWVSSILFSSLVKIHSAEGSEEKWLDALIHQEWDESQLQQCVNDNCLASNPLAELPDAAALLTWLILTHHKLPFLDEQELCNWQDKAINLHTQLLAKIKQSWGYRNGNDDAQFQQRIKMCFEFPNGLLSNSKAWVQAVQQAATDLKNQLPLFQQAMADGSWRVIAHYARLCLMLGDHNYSSQGNDPQWHSDIALYANTHKIRNINNIPQVTFKQKLDEHLVKVAETARDIAETLPYFESEPPFASDVPKLAYDKNSTGKFSWQEDAVNSIYQYRKERNDDIKGYFIVNMASTGCGKTRANAKIMQALSEDKQSLRYILALGLRTLTLQTGDEYKDQNKIGLGERDLAVLIGSKAVAQLHQNAKENENASEASNDTSSHQTNSESNDLKPHQTGSESQEMLFDENEEMLRWDENKWSGILPEEVLSTVLTREKDRALLYAPVLACTIDHIIGATETIRGGRYILPCLRLMSSDLVIDEVDDFIEADSAAIARLIHMVGLLGRKVMISSATITPDTALAYFHAYQSGWHAHAKSRQQSLEIGCMWIDEGEYDPVKEKCKSSTLAATLVVNDENTPYFYQQYHGKFIDKRAKVLGQQPARRKALIVPTPKDNTQESQQCYFNHILNAVLTQHHYHAFLDKRTGIQVSFGVIRVANILPCIDLTRFLLECECPDEVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEKSGEEPDALNDAIIRQHLAQVSAEGKAKHLIFILVATPVEEVGRDHDFDWAVVEPSSWRSIIQIAGRVRRHREGEVAQPNMALLQYNLKGFEEGNDNPFSRPGYENRYINLGLSTHDLYELVDEQQLNKSVDAIPRIQKQANYESKKHTNLACLEHAAIKYTFKIEHIFPPKRAENSATSSRRTTRRSNHQTIPSNAASHIWGYTHGNWWMTAISQQIASFRSGAPSFRLVLEILPRGEMQFSEYHRENGWVNVGAQNGIHFIEFPESMKKRLWLVRDYAKSLESQTEEAEQITSLSRFYGEITFLKCLNVHDGYRYDDQMGVYPIKR
>NZ_CP008920.1|WP_040133008.1|2827759_2828737_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPADLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQSEYRPTEYLQDWMRFWFDDKKRLAAAKTLQRSRISYLQKTWQSSRELQNEGFIYNDTLIQNALETFHTRTEAADDPQTLLLTEAQLTKALYKYAANNTGQKNFTRQHQAMDKANAFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWSFICAKEGASEQEFRQQILQSFIDNHALDFLFDTVKTIALQTGSEQQIQEPKL
>NZ_CP008920.1|WP_014658066.1|2826273_2826456_+|hypothetical-protein
MTGGIVTGALISYALYKLDDEFGISESIINALKSKRPNKPVPLGHPQQMFTTWGLCSRGF
>NZ_CP008920.1|WP_071881669.1|2824154_2824328_-|DinI-like-family-protein
MVTIKIRFNENKKNQLPISTLEALKNEVTKRLSAKYSDLRVDINWGTQDNVSIDGLG
>NZ_CP008920.1|WP_004918626.1|2823574_2823955_-|DUF805-domain-containing-protein
MNWYLEVIKNNYANFNGRARRKEYWIFSLINFIIIIPLYLVVLASTNDYTGDINGLGIVALVLLMIYCVAILIPSLAVTVRRLHDIDKSGWWYLLTFIPFGGLVIFVFTCLDGTPGNNRFGSNPKE
>NZ_CP008920.1|WP_014658063.1|2821721_2822657_+|flagellar-hook-filament-junction-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRVNQSENRNQQYVASRGFAKTGMLLQMSVLTQMTEVTTQIDTTIIQASNQGSLSDSDRMSLAEQLSGLKDQLVALGNTTDGNGRYIFAGYKSDKPPFEVNAAGDVIYKGGDKAIMQNVSSDREMTTYFTGAQVFATDSNNVVNVFKALNEGIAALKTPQDQATQSEKEAAQKALDSANTAVKSALDKISNIESKQGLQLQEIDQLNFLADTRSIQNSQRISELLDTNWTGVTTDYYKEMAMFQASQDIFKDLNSMSLFGGR
>NZ_CP008920.1|WP_004918654.1|2838947_2839730_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLLGG
>NZ_CP008920.1|WP_004918656.1|2839732_2840002_-|flagellar-biosynthesis-protein-FliQ
MTPESVMALGTEAMKIALMLAAPLLLAALVAGLTISLLQAATQVNEMTLSFIPKILSVIAVIIIAGPWMLNLLLDYMRTLFSNLPFIIG
>NZ_CP008920.1|WP_014658072.1|2840011_2840755_-|flagellar-type-III-secretion-system-pore-protein-FliP
MFSVKSPAMIASLLLMLPMQALASLPPVISRTLPDGGQSWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKISLETALERGTAPFRTFMLGQTRESDLALFARIAKVGEIQEAKDVPMRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP008920.1|WP_004918662.1|2840767_2841196_-|flagellar-biosynthetic-protein-FliO
MKTTPFISQTEQPSSQISPAISNSDSLVQVSGALGGIILLILAGAWLVKKLGFAPRNLGKPSLIKVKSSCSLGNKERVVVVEMNNEWLVLGVTAQSVNLLHQCPAKNETALTSVTEPLTFQSILKKKQDAANHAASNLSNYN
>NZ_CP008920.1|WP_004918665.1|2841220_2841637_-|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>NZ_CP008920.1|WP_004918669.1|2841629_2842637_-|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPSSNESATQPKDKEQVRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIIHRMLKLALSAYRDAWRPIADIDVEYVRSEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKPDRLIVSVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDEESTNE
>NZ_CP008920.1|WP_004918672.1|2842642_2843125_-|flagellar-basal-body-associated-protein-FliL
MSSSSNTSKNSNKGLLVLFALLAIAGAGFGGYTWWTTQQTANSVNEEEKSPKLSQPIFMDLEPFTVNLPGLNESPDRVLYINITLRLANEKSRKQLHDFLPEVRSRLLLLLSEQKPKALSTHDGKLQLMQAIKKTLSPTVIPGENDQEITDVLFTTFILR
>NZ_CP008920.1|WP_040133012.1|2843290_2844652_-|flagellar-hook-length-control-protein-FliK
MDVNNTGSPAITAANGAKNGHTQPNQSRADDNQEAVVPFQAALESQQPTPQKASTSEPTMDKQANQKPTSADERLTTKAHEPSTGKEKEQAEQAIEQLNYSRHLRNGSEQPALQSQLLAQSDAVEQVWLANLKNAVDQQTLSSATTKFADGQRAALVPFAQKTQPLNDSLVAMATMDEPIDLSAQMQLAGEEESPSLGAFIKNEREPRKDQPLFSLNEGRESLTKNLSSDFMPLNKKLADKEAPSSIVPTFATADNGALIKGAFTPTTGSDAIQMAPSSPTQTVSLTPLPNSSQIVSTNVPVIPMQPGVPLGSEAWQQQLNQHMLFFSRQGVSHAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSQVRAAMETMMPILRNALQESGIHLAQGSVGQDNFSGQSNADTHSEQGHEKNLYGGQTLSSVTSTEMAAVSPTTSTIRTRGGIDTFA
>NZ_CP008920.1|WP_004918676.1|2844652_2845096_-|flagella-biosynthesis-chaperone-FliJ
MSKNNALDTLLSLAVEASEEAAKVLAQVRQTQVQMTQQLNMLENYQAEYRQKLNQTLHSGIDADKWQNYQQFLVTLELTIEQQQQQLSLWEQRVSEANRHWQEKQQRVNAFDTLIQRAEQTKNQRLNRLEQKQMDEYAQRAMLRRNQ
>NZ_CP008920.1|WP_004918680.1|2845106_2846471_-|flagellum-specific-ATP-synthase-FliI
MTVRMSRWIAALEGFESRMKGIPMIRRYGRLTKITGLVMEAEGIKMPLGATCFVERAINDRHDEVVCEVVGFNGPRMLLMPLADLEGIAPGARVYAQTNGDDGQTSRLLPLGDELLGRILDAQGTPLDGKGPLDAKQRAPLITPPINPLERTPIHSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGAEGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDLGKNVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIDKQHYRQIQRFKQLTSSYQRNRDLINVGAYATGSDPLLDMAIQYYPRMSKFLQQDIDERCDYQSACEQLVHAVPNE

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Crispr_ID: NZ_CP008920_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_4

2910211-2910838

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR

10 spacers

The CRISPR arrays of NZ_CP008920_4

>merge|NZ_CP008920|4|2910211-2910838|CRISPRCasFinder,CRT,PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAAATGACAGAGTTCGTCATGATGCTAAAAGCTAAGTTCACTGCCGTATAGGCAGCTTAGAAAATCGACTTTAATGCCATAATTGGTTTGGTAACGTTCACTGCCGTATAGGCAGCTTAGAAATAAAGGCCGAGGGATTTTAAATTCGAGGCTTTGTTCACTGCCGTATAGGCAGCTTAGAAATTCGAGATATGCTCTATAGCTAGCGCCTCCCCGTTCACTGCCGTATAGGCAGCTTAGAAAACGTTGTTTGGCCAACTTGGCATGCGTTGAAAGTTCACTGCCGTATAGGCAGCTTAGAAAATTTAACCAAGCCCCATTTTATGGCGACTTTGGTTCACTGCCGTATAGGCAGCTTAGAAAACGCACCGGAGATATCAGCCATTTTCGTCACAGTTCACTGCCGTATAGGCAGCTTAGAAAACAACAATTAATGATTGTTTCTGGAAATGCTTGTTCACTGCCGTATAGGCAGCTTAGAAATTTGATGTGTCGGGGAACCTTGCTATTGCATCGTTCACTGCCGTATAGGCAGCTTAGAAAAATACAATTATTGATATCGCAAGTAGCATAAAGTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|4|4|2910211-2910838|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGACAGAGTTCGTCATGATGCTAAAAGCTAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCGACTTTAATGCCATAATTGGTTTGGTAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAAAGGCCGAGGGATTTTAAATTCGAGGCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCGAGATATGCTCTATAGCTAGCGCCTCCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGTTGTTTGGCCAACTTGGCATGCGTTGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATTTAACCAAGCCCCATTTTATGGCGACTTTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCACCGGAGATATCAGCCATTTTCGTCACA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAATTAATGATTGTTTCTGGAAATGCTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATGTGTCGGGGAACCTTGCTATTGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATACAATTATTGATATCGCAAGTAGCATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|4|4|2910211-2910838|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGACAGAGTTCGTCATGATGCTAAAAGCTAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCGACTTTAATGCCATAATTGGTTTGGTAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAAAGGCCGAGGGATTTTAAATTCGAGGCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCGAGATATGCTCTATAGCTAGCGCCTCCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGTTGTTTGGCCAACTTGGCATGCGTTGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATTTAACCAAGCCCCATTTTATGGCGACTTTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCACCGGAGATATCAGCCATTTTCGTCACA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAATTAATGATTGTTTCTGGAAATGCTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATGTGTCGGGGAACCTTGCTATTGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATACAATTATTGATATCGCAAGTAGCATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP008920|4|4|2910331-2910838|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAAAGGCCGAGGGATTTTAAATTCGAGGCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCGAGATATGCTCTATAGCTAGCGCCTCCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGTTGTTTGGCCAACTTGGCATGCGTTGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATTTAACCAAGCCCCATTTTATGGCGACTTTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCACCGGAGATATCAGCCATTTTCGTCACA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAATTAATGATTGTTTCTGGAAATGCTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATGTGTCGGGGAACCTTGCTATTGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATACAATTATTGATATCGCAAGTAGCATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_014658101.1\|2896145_2898935_+\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP008920.1\|WP_040133030.1\|2914893_2915223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040132423.1\|2916866_2917901_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP008920.1\|WP_040133031.1\|2915261_2915531_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_014658106.1\|2907845_2908394_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP008920.1\|WP_004918792.1\|2905302_2905989_+\|response-regulator	unknown	unknown	gnl\|CDD\|236538
NZ_CP008920.1\|WP_040133027.1\|2911589_2912363_+\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP008920.1\|WP_040133032.1\|2915605_2916619_+\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|377071
NZ_CP008920.1\|WP_014658102.1\|2900595_2900862_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_105874340.1\|2913529_2913778_+\|holin	unknown	unknown	gnl\|CDD\|374352
NZ_CP008920.1\|WP_040133025.1\|2903848_2905081_+\|peptidase-T	unknown	unknown	gnl\|CDD\|237371
NZ_CP008920.1\|WP_040133028.1\|2913770_2914163_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP008920.1\|WP_014658104.1\|2902259_2903813_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP008920.1\|WP_014658133.1\|2912677_2913010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040133029.1\|2914181_2914559_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918794.1\|2905955_2907788_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP008920.1\|WP_120752678.1\|2913198_2913318_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918779.1\|2898921_2900394_+\|DUF3999-family-protein	unknown	unknown	gnl\|CDD\|372507
NZ_CP008920.1\|WP_004918784.1\|2900935_2901340_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP008920.1\|WP_014658103.1\|2901548_2901965_+\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_014658101.1\|2896145_2898935_+\|DUF2339-domain-containing-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	7.14631e-86
NZ_CP008920.1\|WP_040132423.1\|2916866_2917901_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.65209e-51
NZ_CP008920.1\|WP_014658106.1\|2907845_2908394_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	4.25255e-102
NZ_CP008920.1\|WP_004918792.1\|2905302_2905989_+\|response-regulator	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.01836e-52
NZ_CP008920.1\|WP_040133027.1\|2911589_2912363_+\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	2.93313e-36
NZ_CP008920.1\|WP_040133032.1\|2915605_2916619_+\|terminase-small-subunit	gnl\|CDD\|377071	pfam03592, Terminase_2, Terminase small subunit. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site.	1.65414e-18
NZ_CP008920.1\|WP_040133028.1\|2913770_2914163_+\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	3.64471e-40
NZ_CP008920.1\|WP_040133025.1\|2903848_2905081_+\|peptidase-T	gnl\|CDD\|237371	PRK13381, PRK13381, peptidase T; Provisional.	0
NZ_CP008920.1\|WP_014658104.1\|2902259_2903813_+\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP008920.1\|WP_004918794.1\|2905955_2907788_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP008920.1\|WP_105874340.1\|2913529_2913778_+\|holin	gnl\|CDD\|374352	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III. Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.	4.96675e-08
NZ_CP008920.1\|WP_004918779.1\|2898921_2900394_+\|DUF3999-family-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	8.7517e-51
NZ_CP008920.1\|WP_004918784.1\|2900935_2901340_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.58541e-26
NZ_CP008920.1\|WP_014658103.1\|2901548_2901965_+\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	7.8663e-52

>NZ_CP008920.1|WP_014658106.1|2907845_2908394_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKLNIPTWLTLFRVILIPFFVLAFYLPVSWGPFVCALIFVIAAVTDWFDGYLARLWKQTTKFGAFLDPVADKVMVATALVLVTESFDVWYVTLPAATMIAREIIISSLREWMAEIGKRSSVAVSWIGKFKTTAQMISLVGLLWRPNLLIENLAIALLYVAAILTFWSMYQYLKAAWSDLSEA
>NZ_CP008920.1|WP_004918794.1|2905955_2907788_+|excinuclease-ABC-subunit-UvrC
MSEQFEPKAFLKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRTNVSSRKTEQLVKNIASIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSKETHPRLSMHRGAKHAKGEYFGPFPNSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVKGLVSDEEYEQQVNYVRLFLTGKDQQVLTGLIERMEKASQALRFEEAARFRDQIQAVRAVTEQQFVSGDSDDLDVIGVAFEAGLACIHVLFIRQGKVLGSRSYYPKIPADTLLEEVVQTFLGQFYLQGSENRTLPGEILLDFALPEKTLLADSLSHIAGRKIQIQTQPRGARARYLKLARTNASTALLTKLAQQSTIHQRMSSLAKTVGLDSIARMECFDISHTMGEQTVASCVVFDKNGPVKSEYRRYNITGITPGDDYAAMHQVLTRRYGKHIDESKVPDIIFIDGGKGQLGQAKDVFNSLDVDWDKNRPLLIGVAKGSDRKAGLETLFFKPEGEGVALPPDSPALHVIQHIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLKNASIEEIAKVPSISYALAEKIYNALKQ
>NZ_CP008920.1|WP_004918792.1|2905302_2905989_+|response-regulator
MINIIIIDNNNILIRGLEAIFSRHKRCHIVASFPLIEQAISWNRQQKASIILINNDNCQFESLKALQTLRRTQPDVGIIIYNIHAHYSFLLKALDLGIQGILSAKIEVNEFLEAIQVVNARSKIISPDIAQSIALKRINQHEQTDLYELLSTRELEIMLLITQGIPTKQIAQVLNLSPKTVNTYRYRMFGKLNIRSDVELTHIAISYGLIVAKQGLLGCQNSLNQKLS
>NZ_CP008920.1|WP_040133025.1|2903848_2905081_+|peptidase-T
MNKLGKQLEQRFFRYLAIESQSDAAATVVPSTEGQRDLAKLLAKELESYGLKEIYIDEHAILYAVRPGNKPSAPKIGFVTHLDTVDVGLSPVIKPQTLKYEGKDLCLNAQEDIWFKASEHPEAAPYIGEEIIFSDGTSVLGADNKAAVTVVMELMDKLQQADFDCGDIYVAFVPDEEIGLRGSKIMDLSRFKVDFAYTIDCCDLGEVVYETFNAASIEVTIKGVTAHPMSAKNVLLNPIRVAHDFIGCFDRFDTPEHTEQREGYFYVTDLVANPDNAKIKMAIRDFDRNSYEARKRYIGEAIELIRARHPRAKIDFKIEDVYSNISDSLGDDRTAIDLIFEALKIQNVEPKVIPMRGGTDGSALSARGILTPNYFTGALNFHSRFEFLPLSSFEKSYLVSESICRLVGQK
>NZ_CP008920.1|WP_014658104.1|2902259_2903813_+|AbgT-family-transporter
MTTNTLPKKKGFLNRVERIGNVMPDVTMLFIYALIICWFLSYLLSFVDFNYYHPVSKEKITVINMFNYEEIILFITAAVKNFINFPPLGITIVATLGIGIAESSGFINTALKKMLSFITPKMLTPTVVFVGIVSHIASDSAYVILMPVAAMMFYASGRHPLAGIAAAFAGLAGGFTASYTPSIIDPIMQSFTQDAAQMMAPGYSVNVLCNYFFSLGGTFGVIFTCWFITEKIVEPWLNKNCPITTKDVDTDADQDLGKITPLENRAFRVSGLVVLALAAGLFALLWPENSLLRGPDGSLTSPKAPIMQIVVPLLFIFFALPGIVYGYMTKSFTSTKDVVKAMENITKSLIPFIVFAFFAAQFLYSFQHSNLGTLLALSGAELLRTLDMPSGLTVFGVILLTAILNIMITSATSKWAIMAPVLVPMLMAVGISPELTQAAFRVSDSAMNVSTPMFPFYPLILMYCQKYYKNAGIGTLCSMMIPFTVGLLITLTATLYLFWAFDIPIGFDSGYTWQPTP
>NZ_CP008920.1|WP_014658103.1|2901548_2901965_+|phosphate-starvation-inducible-protein-PsiE
MNSMRNMRHASNIAWVLQWVLNIGLIALAIVLVFFLAKETYTMASLMFSGQKEATAYELLEGIVIYFLYFEFIALITKYFLSGYHFPLRYFIYIGITAVIRLIIVDHSDPLTTLLHSAAILVLVVALYIANTEKLKRE
>NZ_CP008920.1|WP_004918784.1|2900935_2901340_+|GFA-family-protein
MYQGQCLCGAVKISTHQPIDKISVCHCGMCQRWNGGPGFSVDCHDDVVIEGEEAVTRFASSQWGERAFCQRCGTHLFYHLHSPSSYYVSAALFEESQHAEMAMQIFVESKPKYYNFIEKTPMLTEQDIMKLMAK
>NZ_CP008920.1|WP_014658102.1|2900595_2900862_+|hypothetical-protein
MRTRFFSKLFIAIALLTSASLFAEAAETVTSYEQVNVKIEHPLKQNKMQDLGDIESMREQAEVRRVELTETTTDRRFNGRQFRIGDKQ
>NZ_CP008920.1|WP_004918779.1|2898921_2900394_+|DUF3999-family-protein
MKLTKSKGKWLTFVYLSFSFLLSSFVHAQEQKALTPYDFYQGIELKYSSDNSSFAWLELPSEAYINSAYPQTLQDVRVFNGTGQEVPSALFYDTEERRKISQVSFALQRLIIRADQVNSKEETHDDQQYLLIETQPSKLTRIELPAMQQAKDAVYQSYLLTRQNNNQEDFPIQTLSLQWMNNQQDWQGKVFIYASDNKQDWVNISAYQPVMSLNSNSGGIYSNTIKLLEGHYVALRAPYLMVIIVAAKETKIPDLTMAQGTSMVVHSTRRQETCHFITNNEGVSLNQLIYRLPSPQPLSAIVIQLRQANRVLPLHIEYTSTSGEEWLPLTNIVAYNQIQNGQEIRNPELVLNDLMVKKLRITALKGSWDDKPPYIEGKRDAVNLMFNVQGASPYLLVWGSQLAGIDNISYQELLGQPLTIDELMHRYPKLYVPEEIIELGGEEQLTSNDFVINEFDWMTITLWVLLGVGIIVLLYFCWYLLKEVNAKSSE
>NZ_CP008920.1|WP_014658101.1|2896145_2898935_+|DUF2339-domain-containing-protein
MDGLILIGLIIAILAAVSPILAIIAIVFVQRVKYQLFQQNQRILSLEQTLKRYQDREINQQTELSPPETIVASEKPQQYQSASEELSHYSNELEPLPTAPPVLNSQVTEEVPQRQFQPTVDVNRVAQSSNNVGHPSNNKVSGQNNEVVPLFSHFFSWIWKGNPLAKIGILLLFFGIAYLLKFSIQNNMLSPQVRLIASAVACLALLGVGWYLRHKKSLFALILQGGSIGCFYITVFAAFKLYTMLPYSMAFVAMILICAASILLALLQRAISLAVLASLGGYLAPILLSTGGGNHILLFSYYLMLSIAILVISVWQAWRPLNLVGMFMTYAVALLWGVQYYQIDYYVSSQLFLIANLIVFNVLTQLFALRYPHEKQLVVDYTLLLVPPFISMAMQCAISWQISFAPAFSALLLGLLYLLAGLRIHKRYAVVGKNLALGNIIIGIGFVTLAIPLALTYEWTSILWSVEGLLLLYYGFSQQNKKLIVIGPWLISVSALILLAGFSFNIWSRTSTYLVPVLLAACFSAGAIFHVKRGTSENYKVLSYAFLILGLMIWIVWLPVITDILSWSGESESFIIMALVIISAWLWRMLAIKTDWVPLLLCQSFIWLIGYYYLALDFINDQNPMGRGDGSLIWPVMLGSSILFVIHAQKARNIWLQRILHGATFWLILAFIATQVNWFVAILPWGMNELGYFIYVMAITLTILVMYWLQSQKMPPMKRNGIIYWYSFLPVIVVLIGLSFIANFEDGKLTFWNYVPLINPLDEAGLFSIASLLLMRRGLIQKLKKIREFDLWIIRGLGFSAIVLSGVWFNGIIIRIISDFAEINWNVDALFNSRLVQTVLSISWSLVALGFMIFASIKQNRMSWFLGAGIFACVIAKLFLVDIYGQDGLSRAISFIVVAVLILVVGYFSPLPPKTAQHKGTNEVEDEAN
>NZ_CP008920.1|WP_040133027.1|2911589_2912363_+|antitermination-protein
MENVLKNFHPKSPTFGNVAGCTSPDRITGTDIMAAMGITESQAKFGMTAFLAKNDISEEDKFSTVEALTQYALKVAPKLVRKAAGKELGCCLIILAKMAFEDYARSAGSVFPCSACSGKGLIYKRKDVVKHPGITRLDGTVVIEPWIENEKVDELCVSCNGKGQIAHRCRCKGRGKVLDDIQTKLQGVPVFKDCPRCAGKGFNRVPSSVAYNAIKHLVPDLTQSSWSRNWKPFYDKLSRKCLIEESIAEQAFSKVTK
>NZ_CP008920.1|WP_014658133.1|2912677_2913010_-|hypothetical-protein
MERRRYIVFNVKGFSSIYNDFAGEDIPFRLMLERASGGTEVVNLNLHSKLDMMFYQTLLSYCYGSPSFSNPNNLLGPKYLRAGISLDDSGLIGFDMSNNIIPDNDVYDDN
>NZ_CP008920.1|WP_120752678.1|2913198_2913318_+|hypothetical-protein
MGVKKQEITRLFNLQHSTKIDTINQAIIAMGHRLTLSLL
>NZ_CP008920.1|WP_105874340.1|2913529_2913778_+|holin
MTMLGVAASYAYKVLNGERFSWRTFILQAIVAVFAGAIVFLASSYYQWVPEIAGGAAGFAGWSGAELIKTIEKRFLRKVSGE
>NZ_CP008920.1|WP_040133028.1|2913770_2914163_+|M15-family-metallopeptidase
MSKFKFSKRSEENLRGVHPDLVKVTRRAIELTNIDFMVIEGKRTEARQRQLVKNGASQTMNSRHLTGHAVDCAPLVNREIPWNDWSKFKLVADAMLQAAKELGVDLEWGGNWKSFKDGPHFQLTHKSYPA
>NZ_CP008920.1|WP_040133029.1|2914181_2914559_+|hypothetical-protein
MKFDKSFWLFVMVVMLGWWIVTEHDTRVKAQNENKQLRQDNNNLSEIISKQSLQFNRFNQIASVAYRNGIQAETKAQEKIIEYRTILKKESVCDPLVPQPIANGLYEYTNELRSSAMHTDTSNIN
>NZ_CP008920.1|WP_040133030.1|2914893_2915223_+|hypothetical-protein
MEFSVLVTFDLAYCGSSDYLLVKRKLEDMGFTAKSHRSGLTLPSNTYLAKIEEQCDGSVSEMLTVANMVVYRVYNSIKATTTDAQIASKVYVIASPMTVTTDSCSIDIK
>NZ_CP008920.1|WP_040133031.1|2915261_2915531_+|hypothetical-protein
MAEIKINPIQLVTVGNYNAVINTIVTDSYDFLGGVVIEKNGQERSTWWGDSGIARDSPSDYNIRLPAGFIGGILHLLSPEIQEYVNRYL
>NZ_CP008920.1|WP_040133032.1|2915605_2916619_+|terminase-small-subunit
MAKSDWGTLQQQFLAEHAISGISPKEWCEEQGLKYSTAKRYIKIANGGANSQKKSANKTANSQKKKCVKEPVRKSDIPTAQSSEQDNAHDDESTFNLRNYGLSDLQAKFVNEYLVDLNRTAAYKRAGGKCEGNSAYVSASRMFRNVKVNRAITDALAERERRTEITQDAVLKMWWDIATADVNELTEYRRLCCRHCWGFGFNYQWRDAVEYDDAVKKAMAASKAPPQDVGGYGYDDTLDPNPDCPRCNGAGIGRAHFHDTRDLTGAARRLFAGVKEGKFGVEVITRNQDDALKMVAQHLGMVKTRTELTGKDGEPIKTEVANMTSQEAADAYKKLMG
>NZ_CP008920.1|WP_040132423.1|2916866_2917901_+|IS110-family-transposase
MTVITIGIDLAKNVFQIHGVDENGKCQLKKRLKRSQMTTFFANMKPCLIGMEACAGAHHWARILIAQGHSVKLMPPQFVKPYVKTNKNDMADAEAICEAVSRPNMRFVSIKTSEQQSLLSVHRARTGFVKARTAQINQIRGLLAEFGIVLPQGAVAINRHVPELLEDADNGLPMSFRHLLSSLYKNIKQLSEHIETLEAAINEQFRQDELCKKIAAIPGVGVLTATAIVSTVGDGKGFKNGRQLAAWLGLVPLQHSSGGKNVLGRISKRGDVYIRTLLIHGARSVIVARKHKLLPGSWLSRLLTRRNKNVAAVALANKNARMLWVLLTTDKEFSPDQTIGAVYM

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Crispr_ID: NZ_CP008920_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_5

2931630-2932558

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATGCGGCAGTACAC	PILER-CR
GTGTACTGCCGCATAGGCAGCTTAGAAA	CRISPRCasFinder
GTGTACTGCCGCATAGGCAGCTTAGAAA	CRT

15 spacers

The CRISPR arrays of NZ_CP008920_5

>merge|NZ_CP008920|5|2931630-2932558|PILER-CR,CRISPRCasFinder,CRT
GTGTACTGCCGCATAGGCAGCTTAGAAATGAATATAACAATGGTGACAATCTAAGCGAAAGTGTACTGCCGCATAGGCAGCTTAGAAATTGCCTGATTTACTGTCCTCAGGGTAAATCCAGTGTACTGCCGCATAGGCAGCTTAGAAATTGTTAGCGGGAATACCCACCAACACATCCATGTGTACTGCCGCATAGGCAGCTTAGAAATTTAGCTCTACGTTTCTGTAGCGTTGCTTCTGGTGTACTGCCGCATAGGCAGCTTAGAAAAAAGTATGCTTTAGCTGAGTTCGCTAGTTTTGTGTGTACTGCCGCATAGGCAGCTTAGAAAAAAAAGAACATCCGCAGCACTGCGAGCGTTTTGTGTACTGCCGCATAGGCAGCTTAGAAACAGCGCAAGCAGGCAGACGAAGAACAACAAAATGTGTACTGCCGCATAGGCAGCTTAGAAATTTCATCAAGAAAGGTTTATGTTGGTATTATTGTGTACTGCCGCATAGGCAGCTTAGAAAAACCATCAACACCAACAACTGGAACTATTCCCGTGTACTGCCGCATAGGCAGCTTAGAAAACGTAAACCCGCTACGCTGAACGCTTGGCATGGTGTACTGCCGCATAGGCAGCTTAGAAAACGTAACAGAAAAGATGCTGGGGCATGAACTGTGTACTGCCGCATAGGCAGCTTAGAAATCATCTTTCATTCCTGTATATGTAAAAGGCCAGTGTACTGCCGCATAGGCAGCTTAGAAAATTAGCCTGCTTCCTTGCTCTGCAACTGAGTTGTGTACTGCCGCATAGGCAGCTTAGAAAAGTGGCTTCATTTGTTCAACGGTATCACCCGCGTGTACTGCCGCATAGGCAGCTTAGAAAAAATCCTTAATGGCGAATGAGAACGTGATTACGTGTACTGCCGCATAGGCAGCTTAGAAA

>NZ_CP008920|5|5|2931630-2932558|PILER-CR
GTGTACTGCCGCATAGGCAGCTTAGAAA	TGAATATAACAATGGTGACAATCTAAGCGAAA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGCCTGATTTACTGTCCTCAGGGTAAATCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGTTAGCGGGAATACCCACCAACACATCCAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTAGCTCTACGTTTCTGTAGCGTTGCTTCTG
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAGTATGCTTTAGCTGAGTTCGCTAGTTTTGT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAAAGAACATCCGCAGCACTGCGAGCGTTTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	CAGCGCAAGCAGGCAGACGAAGAACAACAAAAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTCATCAAGAAAGGTTTATGTTGGTATTATT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AACCATCAACACCAACAACTGGAACTATTCCC
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAAACCCGCTACGCTGAACGCTTGGCATG
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAACAGAAAAGATGCTGGGGCATGAACT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TCATCTTTCATTCCTGTATATGTAAAAGGCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	ATTAGCCTGCTTCCTTGCTCTGCAACTGAGTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AGTGGCTTCATTTGTTCAACGGTATCACCCGC
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAATCCTTAATGGCGAATGAGAACGTGATTAC
GTGTACTGCCGCATAGGCAGCTTAGAAA

>NZ_CP008920|5|5|2931630-2932558|CRISPRCasFinder
GTGTACTGCCGCATAGGCAGCTTAGAAA	TGAATATAACAATGGTGACAATCTAAGCGAAA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGCCTGATTTACTGTCCTCAGGGTAAATCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGTTAGCGGGAATACCCACCAACACATCCAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTAGCTCTACGTTTCTGTAGCGTTGCTTCTG
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAGTATGCTTTAGCTGAGTTCGCTAGTTTTGT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAAAGAACATCCGCAGCACTGCGAGCGTTTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	CAGCGCAAGCAGGCAGACGAAGAACAACAAAAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTCATCAAGAAAGGTTTATGTTGGTATTATT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AACCATCAACACCAACAACTGGAACTATTCCC
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAAACCCGCTACGCTGAACGCTTGGCATG
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAACAGAAAAGATGCTGGGGCATGAACT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TCATCTTTCATTCCTGTATATGTAAAAGGCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	ATTAGCCTGCTTCCTTGCTCTGCAACTGAGTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AGTGGCTTCATTTGTTCAACGGTATCACCCGC
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAATCCTTAATGGCGAATGAGAACGTGATTAC
GTGTACTGCCGCATAGGCAGCTTAGAAA

>NZ_CP008920|5|5|2931630-2932558|CRT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TGAATATAACAATGGTGACAATCTAAGCGAAA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGCCTGATTTACTGTCCTCAGGGTAAATCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTGTTAGCGGGAATACCCACCAACACATCCAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTAGCTCTACGTTTCTGTAGCGTTGCTTCTG
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAGTATGCTTTAGCTGAGTTCGCTAGTTTTGT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAAAAGAACATCCGCAGCACTGCGAGCGTTTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	CAGCGCAAGCAGGCAGACGAAGAACAACAAAAT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TTTCATCAAGAAAGGTTTATGTTGGTATTATT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AACCATCAACACCAACAACTGGAACTATTCCC
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAAACCCGCTACGCTGAACGCTTGGCATG
GTGTACTGCCGCATAGGCAGCTTAGAAA	ACGTAACAGAAAAGATGCTGGGGCATGAACT
GTGTACTGCCGCATAGGCAGCTTAGAAA	TCATCTTTCATTCCTGTATATGTAAAAGGCCA
GTGTACTGCCGCATAGGCAGCTTAGAAA	ATTAGCCTGCTTCCTTGCTCTGCAACTGAGTT
GTGTACTGCCGCATAGGCAGCTTAGAAA	AGTGGCTTCATTTGTTCAACGGTATCACCCGC
GTGTACTGCCGCATAGGCAGCTTAGAAA	AAATCCTTAATGGCGAATGAGAACGTGATTAC
GTGTACTGCCGCATAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_040133040.1\|2930734_2931385_+\|DUF4431-domain-containing-protein	unknown	unknown	gnl\|CDD\|373092
NZ_CP008920.1\|WP_004918840.1\|2923020_2923254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040133041.1\|2935576_2936209_-\|chitin-binding-protein	unknown	unknown	gnl\|CDD\|237309
NZ_CP008920.1\|WP_072197223.1\|2925643_2925910_+\|death-on-curing-family-protein	unknown	unknown	gnl\|CDD\|273687
NZ_CP008920.1\|WP_040133039.1\|2929008_2930004_-\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP008920.1\|WP_004918906.1\|2936512_2936677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_071881670.1\|2938278_2938821_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP008920.1\|WP_040133038.1\|2927619_2928222_+\|thiamine-biosynthesis-protein-ThiJ	unknown	unknown	gnl\|CDD\|153229
NZ_CP008920.1\|WP_040133037.1\|2924280_2924937_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP008920.1\|WP_014658144.1\|2923283_2923478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918910.1\|2939008_2939305_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP008920.1\|WP_104011696.1\|2937060_2938241_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP008920.1\|WP_014658146.1\|2926685_2927024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918889.1\|2933607_2934387_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177010
NZ_CP008920.1\|WP_004918913.1\|2940863_2941229_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP008920.1\|WP_004918896.1\|2934960_2935188_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP008920.1\|WP_154598717.1\|2925916_2926054_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273687
NZ_CP008920.1\|WP_004918885.1\|2932718_2933213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_036943812.1\|2940264_2940738_+\|membrane-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP008920.1\|WP_014658143.1\|2921834_2922224_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_040133040.1\|2930734_2931385_+\|DUF4431-domain-containing-protein	gnl\|CDD\|373092	pfam14485, DUF4431, Domain of unknown function (DUF4431).	3.19303e-14
NZ_CP008920.1\|WP_040133041.1\|2935576_2936209_-\|chitin-binding-protein	gnl\|CDD\|237309	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA.	3.30103e-85
NZ_CP008920.1\|WP_072197223.1\|2925643_2925910_+\|death-on-curing-family-protein	gnl\|CDD\|273687	TIGR01550, Protein_kinase_doc, death-on-curing family protein. The characterized member of this family is the death-on-curing (DOC) protein of phage P1. It is part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison (e.g. this protein) and a more abundant but shorter lived antidote. Members of this family have a well-conserved central motif HxFx[ND][AG]NKR. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family. [Unknown function, General].	5.10632e-06
NZ_CP008920.1\|WP_071881670.1\|2938278_2938821_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.88098e-34
NZ_CP008920.1\|WP_004918889.1\|2933607_2934387_+\|hypothetical-protein	gnl\|CDD\|177010	CHL00071, tufA, elongation factor Tu.	3.64528e-08
NZ_CP008920.1\|WP_040133037.1\|2924280_2924937_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.82816e-14
NZ_CP008920.1\|WP_014658143.1\|2921834_2922224_+\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	3.42039e-05
NZ_CP008920.1\|WP_004918910.1\|2939008_2939305_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	4.55236e-22
NZ_CP008920.1\|WP_104011696.1\|2937060_2938241_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.65807e-106
NZ_CP008920.1\|WP_040133039.1\|2929008_2930004_-\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	9.45298e-165
NZ_CP008920.1\|WP_004918913.1\|2940863_2941229_-\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.16602e-22
NZ_CP008920.1\|WP_154598717.1\|2925916_2926054_+\|hypothetical-protein	gnl\|CDD\|273687	TIGR01550, Protein_kinase_doc, death-on-curing family protein. The characterized member of this family is the death-on-curing (DOC) protein of phage P1. It is part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison (e.g. this protein) and a more abundant but shorter lived antidote. Members of this family have a well-conserved central motif HxFx[ND][AG]NKR. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family. [Unknown function, General].	4.72083e-05
NZ_CP008920.1\|WP_004918896.1\|2934960_2935188_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.29088e-06
NZ_CP008920.1\|WP_036943812.1\|2940264_2940738_+\|membrane-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	0.00396084
NZ_CP008920.1\|WP_040133038.1\|2927619_2928222_+\|thiamine-biosynthesis-protein-ThiJ	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	4.9437e-18

>NZ_CP008920.1|WP_040133040.1|2930734_2931385_+|DUF4431-domain-containing-protein
MIKLFLFLIFVFPSITYAASFDCAKAQSNVEKLICNTPELSKADDELYVDYLQAKLVTGNSDEFKRLVKKNWELRVKNCDTKSCLLDWYHRSTIIYRNIAASQPVDEQDISEFNYYYNSPVKLRGVIRLEKPDGFLTLRTDNIISVSSKEPEDSEGEPTEWGIGALHLAPRNSDQFNQLKEIQGKKVDITCDLYHATNIHHKTPVLCSVEHYVLVK
>NZ_CP008920.1|WP_040133039.1|2929008_2930004_-|chitinase
MSSDNIINTQVVDDATAMPDISNKKIMMGFWHNWAAGASDGYQQGQCANMNLTDIPEEYNVVAVAFMKGEGIPTFKPYNLSDAEFRRQVGVLNSQGRAVLISLGGADAHIQLKTGDEDKLTNEIIRLVETYGFDGLDIDLEQTAISSANNKTVLPAALKKVKEHYAAEGKNFIISMAPEFPYLRINGAYLDYINALEGYYDFIAPQYYNQGGDGIWVDEITSGKGAWLTQNSDAMKEDFLYYLTESLVTGTRGYTKIPPSKFVIGLPANNDAAGSGYVIDKQAVYNAFARLDAKNLSIKGLMTWSVNWDNGKSKTGVAYNWEFKTRYAALL
>NZ_CP008920.1|WP_040133038.1|2927619_2928222_+|thiamine-biosynthesis-protein-ThiJ
MFNVAIIIFDEFTDIDYFLMRDIFGRCREDWNVSVLGTKPFHTSTLGQKVETDGHVSLANQADVVLFSSGQQGVPNALADESFMQSFKFNSQQQIIGSICAGSFILHKLGLLNDIQATTHPDARNAFINMGADVEDKPLVIRGNIGTAGGCLSALYLTGWIAEKLFDSDKRRQMHRQILPANQHELYEQIIVNAITEAQH
>NZ_CP008920.1|WP_014658146.1|2926685_2927024_-|hypothetical-protein
MKNKHTTQDYMQKFMIKQNEVIVPYLRQVIHPTELKSVFCIYEMIEQGENIYTYLVNGEMVVIFEISRIDHSITHDRTLPIREYAQEIKGRQWHRYIRELQAFAEQEDSQVN
>NZ_CP008920.1|WP_154598717.1|2925916_2926054_+|hypothetical-protein
MMASCVYLLLNGYELTTPKNEVIEMANGMATKEYSLIELDGWLSF
>NZ_CP008920.1|WP_072197223.1|2925643_2925910_+|death-on-curing-family-protein
MLNISEKFVAGITYLSVDDLKSINSVLIVLQTLNEPIEVEVLNFNDLSLSQSSSSHVNYYQQTDDMFVLVSSLIKSWIRNHPVTNANK
>NZ_CP008920.1|WP_040133037.1|2924280_2924937_-|CPBP-family-intramembrane-metalloprotease
MISMDRVLHSLVCVSFFVGWYLIQYALLAFPGITTYNDALAAWPLFTILFILPYSLFSRAYYQKRTGLMPFGTVRFSDLRLPIIAMVILSVATMFYGEDETSILEMLTLSPLHQFILVVSVVFAAPIIEEIIFRGFLLNAGMGYGPNGKHVMIIITSVLFAMIHHQYNSPATFIMIFVMSVIFCHVRIQTNSLMAPIILHMINNAVAMLLLFLLNDTP
>NZ_CP008920.1|WP_014658144.1|2923283_2923478_-|hypothetical-protein
MADLGAALFTAFIVSFISFTAIALYMDHKYKGDTSMSGCLYSFFASFFIPLIIFVTVFLYNFSL
>NZ_CP008920.1|WP_004918840.1|2923020_2923254_-|hypothetical-protein
MALVPIVLGITTLILGPVLLLIIWLSFKGISSKPINKNDNKSSIAIDLLNMFRVLVGLSAIFLLIFIIFFLITSLNY
>NZ_CP008920.1|WP_014658143.1|2921834_2922224_+|VOC-family-protein
MNFQHFRIARPVSNLTKSREMYCGGLGLEIIGSFSNHDGFSGCMLGKVELGWHIEFTECHEHPVSPSPTNEDLLVLYIPNREEWLDVCLKMDNAGFNRVRSFNPYWDIEGVTFSDCDGYRVVLQNGKWG
>NZ_CP008920.1|WP_004918885.1|2932718_2933213_-|hypothetical-protein
MSKFQCSCGHIIRDNTDYLSYKAYYISDQDFYDFLDELEGESRDNFASVAYKYVRDIYQCTKCNNIFIFRGDFFHEFQATQPDSHSLLISNMRDKWPGFLRGYFIKGKGEIYWETNQQSDYLTGLTREQVESTYYHKLNEFQSLGILRDAFLHVDGVMLHEYNR
>NZ_CP008920.1|WP_004918889.1|2933607_2934387_+|hypothetical-protein
MKAIYLLLGLLFSSFAFSAENSVMILGDDYRHTLVKELEGATFVTHGKNDSLIQQVKQAFNQDSIILVINMADGPTQNLRESILIARQSGHNSVQVYYHGKHLPKEMLNDDDFKKLMTLVVKEVNELLDLYEIQITGAYYDWERDFPEKFQLQKNIMAKFSPEPNTLMTEIHSYAYVFTKEEASNNTIITDGTVLAFACQDVIGNATVRSQDPIKRGGNYSHIVLELEKPTLIPLHARCLGTLNNTLAMAFITLLENEK
>NZ_CP008920.1|WP_004918896.1|2934960_2935188_-|HEAT-repeat-domain-containing-protein
MNHSRQKIILNTLIQLTQGTNNEVKLTAISILGDYKYAIQNEETLNRLIELCFDPNKEVAITALKSLGKLSIHFQ
>NZ_CP008920.1|WP_040133041.1|2935576_2936209_-|chitin-binding-protein
MKNLIIPLIYPSILGTVLTLFSFYASAHGYIRMPESRAYLCSFNDYLKEPKTPLNNDCGLGPEYEPQSIETQKGFPESGPPDGLIASGGGIERFSPLDVQTPTRWHKIDMKTGLNTFTWYLTMAHATDNWRFFITKNGWDQSAPLTRSAFELTPFCQRDDHGAMPLIEVDINFICDVPADHEGYHVILATWDVDNTQNAFYQVIDVNLSN
>NZ_CP008920.1|WP_004918906.1|2936512_2936677_-|hypothetical-protein
MKKLLFIISILCSSAYATNTVTWCSPEPNPVTGKPDCITYTPGMGGIDSGGEGP
>NZ_CP008920.1|WP_104011696.1|2937060_2938241_+|IS3-family-transposase
MAKRIRRLFSAEFKLEAAQLVLDQSYSVVEAANAMGVGKSTMDKWVRQLKLERKGISPKASPMTPEQVEIRELKKKIARLEEHNENLKKGYSAGDVGLSEQFSLIEKLSRRFSIKQLCNVFSVHRSSYQYWRHRSKTPSVEQTRLRALVREAHESSHGSAGARTIADIVSNTKQVPLTRYRATKLMKLLGLVSCQTSKHRYKKTTQEHVEIPNHLRRQFAVTEPNQVWVGDVTYIWSGNRWMYLAVVMDLFARKPIGWAMSFSPDSQLTGKALSMAFESRGKPRNILFHSDQGSHYTSRQYRQLLWRYQIKQSLSRRGNCWDNAPMERFFRSLKTEWVPILGYRNSIEAQQEITRYIIGYYSQLRPHQYNGGLTPNESERLYWENSKTVTNFC
>NZ_CP008920.1|WP_071881670.1|2938278_2938821_-|sulfatase-like-hydrolase/transferase
MPKFIESIDNPAKKKLIVVHLIGSHSPFCKRISNKYDKFYKSKDLSCYVQSIKNTDLQLSLLHGILSKSKNSWSMLYFSDHGLSFIDNQQDLIHGDKHRQNFETPLFITSSDSNTREIISAQRSGLNLFHLLAEWLGIHEKNIQSSCKIISNNECKDQNIAIDFDQKIIYFNELLDDSIK
>NZ_CP008920.1|WP_004918910.1|2939008_2939305_+|antibiotic-biosynthesis-monooxygenase
MLKVIAEDFIQLEAINIVLPLYRELVEATKREPLCIAYDLYVDQKDRGHFIFIEEWPDQAALDAHCKSEHFQRLVPMINQYQRKEPSFIFMDDALAKI
>NZ_CP008920.1|WP_036943812.1|2940264_2940738_+|membrane-protein
MNKLFRMCNLLLLTASFSMVSLSSYADPNGGHGHGQGKEHQKNKPNKGHNGNGKEKADHLSLNKSNSISVSLTYNEARALALDSGITGYHALPPGIAKNLARGKPLPPGIAKKVVPPSMLVQLPHYPGYEWSIVGNDLVLIALSTAVVTSIINNVFD
>NZ_CP008920.1|WP_004918913.1|2940863_2941229_-|DUF305-domain-containing-protein
MKKMLPIAAILTISIASFSSFANSNHSMHAQAPASNEMQKELNQSMDKMHADMAKGMNEENADIAFAQGMIAHHLGAIDMAKIELKYGTDPEMRKLAEEIINAQGPEIEQMQKWLEKNKTK

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Crispr_ID: NZ_CP008920_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008920_6

2939769-2940036

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

4 spacers

The CRISPR arrays of NZ_CP008920_6

>merge|NZ_CP008920|6|2939769-2940036|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACTTACGCCCCACTTCTAAGTGCCAAGCCGCAGGTTCACTGCCGTATAGGCAGCTTAGAAATGACTAACTGCGAAAATACAATATCGTATTTAGTTCACTGCCGTATAGGCAGCTTAGAAAAGTCGCTCGATGTGTCTGTACGCAGTTGCACTGTTCACTGCCGTATAGGCAGCTTAGAAAATAATCACCGCAATCAAAGAACCCTCCGTTTAGCTCACTGCCGTATAGGCAGCTTAAAAA

>NZ_CP008920|6|6|2939769-2940036|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTACGCCCCACTTCTAAGTGCCAAGCCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTAACTGCGAAAATACAATATCGTATTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCGCTCGATGTGTCTGTACGCAGTTGCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAATCACCGCAATCAAAGAACCCTCCGTTTA
GCTCACTGCCGTATAGGCAGCTTAAAAA

>NZ_CP008920|6|6|2939769-2940036|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTACGCCCCACTTCTAAGTGCCAAGCCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTAACTGCGAAAATACAATATCGTATTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCGCTCGATGTGTCTGTACGCAGTTGCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAATCACCGCAATCAAAGAACCCTCCGTTTA
GCTCACTGCCGTATAGGCAGCTTAAAAA

>NZ_CP008920|6|6|2939769-2940036|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTACGCCCCACTTCTAAGTGCCAAGCCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTAACTGCGAAAATACAATATCGTATTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCGCTCGATGTGTCTGTACGCAGTTGCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAATCACCGCAATCAAAGAACCCTCCGTTTA
GCTCACTGCCGTATAGGCAGCTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008920.1\|WP_040133040.1\|2930734_2931385_+\|DUF4431-domain-containing-protein	unknown	unknown	gnl\|CDD\|373092
NZ_CP008920.1\|WP_036943823.1\|2949766_2950105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_040133041.1\|2935576_2936209_-\|chitin-binding-protein	unknown	unknown	gnl\|CDD\|237309
NZ_CP008920.1\|WP_036943816.1\|2942588_2943338_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP008920.1\|WP_071881670.1\|2938278_2938821_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP008920.1\|WP_004918928.1\|2947931_2948687_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP008920.1\|WP_040133046.1\|2951874_2953344_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143432
NZ_CP008920.1\|WP_004918906.1\|2936512_2936677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_004918910.1\|2939008_2939305_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP008920.1\|WP_004918889.1\|2933607_2934387_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177010
NZ_CP008920.1\|WP_004918913.1\|2940863_2941229_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP008920.1\|WP_036943812.1\|2940264_2940738_+\|membrane-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP008920.1\|WP_104011696.1\|2937060_2938241_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP008920.1\|WP_040133039.1\|2929008_2930004_-\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP008920.1\|WP_014658157.1\|2944883_2947883_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP008920.1\|WP_040133044.1\|2943405_2944866_+\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NZ_CP008920.1\|WP_004918896.1\|2934960_2935188_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP008920.1\|WP_004918885.1\|2932718_2933213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008920.1\|WP_036943825.1\|2950162_2951806_-\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|180820
NZ_CP008920.1\|WP_040133045.1\|2948706_2949138_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008920.1\|WP_040133040.1\|2930734_2931385_+\|DUF4431-domain-containing-protein	gnl\|CDD\|373092	pfam14485, DUF4431, Domain of unknown function (DUF4431).	3.19303e-14
NZ_CP008920.1\|WP_040133041.1\|2935576_2936209_-\|chitin-binding-protein	gnl\|CDD\|237309	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA.	3.30103e-85
NZ_CP008920.1\|WP_036943816.1\|2942588_2943338_+\|hypothetical-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	4.16213e-05
NZ_CP008920.1\|WP_071881670.1\|2938278_2938821_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.88098e-34
NZ_CP008920.1\|WP_004918928.1\|2947931_2948687_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	7.0707e-23
NZ_CP008920.1\|WP_004918910.1\|2939008_2939305_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	4.55236e-22
NZ_CP008920.1\|WP_004918889.1\|2933607_2934387_+\|hypothetical-protein	gnl\|CDD\|177010	CHL00071, tufA, elongation factor Tu.	3.64528e-08
NZ_CP008920.1\|WP_004918913.1\|2940863_2941229_-\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.16602e-22
NZ_CP008920.1\|WP_036943812.1\|2940264_2940738_+\|membrane-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	0.00396084
NZ_CP008920.1\|WP_104011696.1\|2937060_2938241_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.65807e-106
NZ_CP008920.1\|WP_040133039.1\|2929008_2930004_-\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	9.45298e-165
NZ_CP008920.1\|WP_014658157.1\|2944883_2947883_+\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.06025e-18
NZ_CP008920.1\|WP_040133044.1\|2943405_2944866_+\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	4.46828e-39
NZ_CP008920.1\|WP_004918896.1\|2934960_2935188_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.29088e-06
NZ_CP008920.1\|WP_040133046.1\|2951874_2953344_-\|aldehyde-dehydrogenase	gnl\|CDD\|143432	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.	0
NZ_CP008920.1\|WP_036943825.1\|2950162_2951806_-\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|180820	PRK07064, PRK07064, thiamine pyrophosphate-binding protein.	0

>NZ_CP008920.1|WP_004918910.1|2939008_2939305_+|antibiotic-biosynthesis-monooxygenase
MLKVIAEDFIQLEAINIVLPLYRELVEATKREPLCIAYDLYVDQKDRGHFIFIEEWPDQAALDAHCKSEHFQRLVPMINQYQRKEPSFIFMDDALAKI
>NZ_CP008920.1|WP_071881670.1|2938278_2938821_-|sulfatase-like-hydrolase/transferase
MPKFIESIDNPAKKKLIVVHLIGSHSPFCKRISNKYDKFYKSKDLSCYVQSIKNTDLQLSLLHGILSKSKNSWSMLYFSDHGLSFIDNQQDLIHGDKHRQNFETPLFITSSDSNTREIISAQRSGLNLFHLLAEWLGIHEKNIQSSCKIISNNECKDQNIAIDFDQKIIYFNELLDDSIK
>NZ_CP008920.1|WP_104011696.1|2937060_2938241_+|IS3-family-transposase
MAKRIRRLFSAEFKLEAAQLVLDQSYSVVEAANAMGVGKSTMDKWVRQLKLERKGISPKASPMTPEQVEIRELKKKIARLEEHNENLKKGYSAGDVGLSEQFSLIEKLSRRFSIKQLCNVFSVHRSSYQYWRHRSKTPSVEQTRLRALVREAHESSHGSAGARTIADIVSNTKQVPLTRYRATKLMKLLGLVSCQTSKHRYKKTTQEHVEIPNHLRRQFAVTEPNQVWVGDVTYIWSGNRWMYLAVVMDLFARKPIGWAMSFSPDSQLTGKALSMAFESRGKPRNILFHSDQGSHYTSRQYRQLLWRYQIKQSLSRRGNCWDNAPMERFFRSLKTEWVPILGYRNSIEAQQEITRYIIGYYSQLRPHQYNGGLTPNESERLYWENSKTVTNFC
>NZ_CP008920.1|WP_004918906.1|2936512_2936677_-|hypothetical-protein
MKKLLFIISILCSSAYATNTVTWCSPEPNPVTGKPDCITYTPGMGGIDSGGEGP
>NZ_CP008920.1|WP_040133041.1|2935576_2936209_-|chitin-binding-protein
MKNLIIPLIYPSILGTVLTLFSFYASAHGYIRMPESRAYLCSFNDYLKEPKTPLNNDCGLGPEYEPQSIETQKGFPESGPPDGLIASGGGIERFSPLDVQTPTRWHKIDMKTGLNTFTWYLTMAHATDNWRFFITKNGWDQSAPLTRSAFELTPFCQRDDHGAMPLIEVDINFICDVPADHEGYHVILATWDVDNTQNAFYQVIDVNLSN
>NZ_CP008920.1|WP_004918896.1|2934960_2935188_-|HEAT-repeat-domain-containing-protein
MNHSRQKIILNTLIQLTQGTNNEVKLTAISILGDYKYAIQNEETLNRLIELCFDPNKEVAITALKSLGKLSIHFQ
>NZ_CP008920.1|WP_004918889.1|2933607_2934387_+|hypothetical-protein
MKAIYLLLGLLFSSFAFSAENSVMILGDDYRHTLVKELEGATFVTHGKNDSLIQQVKQAFNQDSIILVINMADGPTQNLRESILIARQSGHNSVQVYYHGKHLPKEMLNDDDFKKLMTLVVKEVNELLDLYEIQITGAYYDWERDFPEKFQLQKNIMAKFSPEPNTLMTEIHSYAYVFTKEEASNNTIITDGTVLAFACQDVIGNATVRSQDPIKRGGNYSHIVLELEKPTLIPLHARCLGTLNNTLAMAFITLLENEK
>NZ_CP008920.1|WP_004918885.1|2932718_2933213_-|hypothetical-protein
MSKFQCSCGHIIRDNTDYLSYKAYYISDQDFYDFLDELEGESRDNFASVAYKYVRDIYQCTKCNNIFIFRGDFFHEFQATQPDSHSLLISNMRDKWPGFLRGYFIKGKGEIYWETNQQSDYLTGLTREQVESTYYHKLNEFQSLGILRDAFLHVDGVMLHEYNR
>NZ_CP008920.1|WP_040133040.1|2930734_2931385_+|DUF4431-domain-containing-protein
MIKLFLFLIFVFPSITYAASFDCAKAQSNVEKLICNTPELSKADDELYVDYLQAKLVTGNSDEFKRLVKKNWELRVKNCDTKSCLLDWYHRSTIIYRNIAASQPVDEQDISEFNYYYNSPVKLRGVIRLEKPDGFLTLRTDNIISVSSKEPEDSEGEPTEWGIGALHLAPRNSDQFNQLKEIQGKKVDITCDLYHATNIHHKTPVLCSVEHYVLVK
>NZ_CP008920.1|WP_040133039.1|2929008_2930004_-|chitinase
MSSDNIINTQVVDDATAMPDISNKKIMMGFWHNWAAGASDGYQQGQCANMNLTDIPEEYNVVAVAFMKGEGIPTFKPYNLSDAEFRRQVGVLNSQGRAVLISLGGADAHIQLKTGDEDKLTNEIIRLVETYGFDGLDIDLEQTAISSANNKTVLPAALKKVKEHYAAEGKNFIISMAPEFPYLRINGAYLDYINALEGYYDFIAPQYYNQGGDGIWVDEITSGKGAWLTQNSDAMKEDFLYYLTESLVTGTRGYTKIPPSKFVIGLPANNDAAGSGYVIDKQAVYNAFARLDAKNLSIKGLMTWSVNWDNGKSKTGVAYNWEFKTRYAALL
>NZ_CP008920.1|WP_036943812.1|2940264_2940738_+|membrane-protein
MNKLFRMCNLLLLTASFSMVSLSSYADPNGGHGHGQGKEHQKNKPNKGHNGNGKEKADHLSLNKSNSISVSLTYNEARALALDSGITGYHALPPGIAKNLARGKPLPPGIAKKVVPPSMLVQLPHYPGYEWSIVGNDLVLIALSTAVVTSIINNVFD
>NZ_CP008920.1|WP_004918913.1|2940863_2941229_-|DUF305-domain-containing-protein
MKKMLPIAAILTISIASFSSFANSNHSMHAQAPASNEMQKELNQSMDKMHADMAKGMNEENADIAFAQGMIAHHLGAIDMAKIELKYGTDPEMRKLAEEIINAQGPEIEQMQKWLEKNKTK
>NZ_CP008920.1|WP_036943816.1|2942588_2943338_+|hypothetical-protein
MKNLSLTALTIVLSSVAFSTSGETVSGQSQAYDSNGVEVNVGKTQFAQGTHSGVIGDPGVGLKTIANGTRIGFSGFKSLAPENEQGVNVLPASSGGHGGAMGEFHFTQVANAEVYFGDWSKTGSVGDQTHTAFFSGKEATESVPTAGQAEYTIAGINQFDGPGKLSGVFNADFGSKKYTGALNGQSLNITMNGNIQDKGQFSGSAIANGSIQGKSSGQFFGKNADVVAGITTFDSDHTKDTSFGGSKVQ
>NZ_CP008920.1|WP_040133044.1|2943405_2944866_+|DUF560-domain-containing-protein
MGLFRAGILWLLLYSSVAIGEISDIDNYRFLLKDKAEFSRKSPVIENNKPFIKDDIKINFDGKEYQVSNTLNEMGMAIYIALNRGQYDDVERLLSYYQQLSGYDVLLVEFAKAQMARANHDYAQAIFHYQTILALKPDFLRVELELARTYFEDQQNNEASSQFKRVLEKYQQQLPQSVLATISQFTTELSKRNSWSGSFSVGYGYNSNINQVPGDKRQRCYRNAVQQFCYGAGLADKGTKFIYDGDIKRTFSLYQHHSLLFKAYTYGNKYDGAAEYNENTSHIRVYYQYQDAKKSFAIGPISEFKWVGERRHYYGVGVGMEAEYRFLPQFSLSTVIDHQKINYRSPYQSQDGNKSQAYITGIYALSSDAVIFGGVDSGYVNKVYDSDSYKQYGIRGGIFKDVSQYYHLLGIASYKQTRFNAPQYALGSQNRMDDEQLYLAKLSLPKYSIATMTPSISYRYRVNKSNIDALYSYQQSEIEIRLEKRF
>NZ_CP008920.1|WP_014658157.1|2944883_2947883_+|TonB-dependent-receptor
MKIKKIITMNIVTGISLTLISGLVLAKEQEDLGTIIVKDNAETIKERDQKGYDDQYDKNESNIYLGKDLVERYKGTNPADVLNSAVGVYSGDARNSGALDPNIRGIQGQGRVPVTVDGTEQAQTVWRGYNGANNRNYVDPNMISSITIQKSASLNPNVKTSVGGGIAIKTLNIDDVVAPDETFGFDLKLETSSNSTKPRVPNLDYGHDYRDDPAIMDNIKNGNKARMLFNDPGLLVTPKSRGDANFFNFKDNAVRVAVGTRQSRFDIMAAYSYRDQGNYFAGKRGANRYKDDVFSYDPKNPSKPVDPYLPFAANVFAPGKEVTNTSSEMESYLVKTNLFLSDSQKVSLGYTHTTNHYGEIMPSRISFMELDGKVPQWTLAKFNIQAFHADYYLNPEDNPYVNMKLGYWMTKTTSDTNTSGGFPREPKERDMGFEYGWMPRNPNIDGTLVPGASLNSTNKRQGLNLSNQMALTDSLDLTLMGSFSKETVDTEDDIFEYSGSSTSTIFRAVPREGERQENTFAFNFEWRPTDWLNVTAGAQRTSYWSKDHLLDKRRDAKDVNFARPHQLLSKNYDISRTITQNEYDTLTRFTNAEGQKLDDVMDSPYYLERFVEEALNLQKHSLDYAGFRSANGQGEFRIDEKNKAKWRPDGKNKLTRETNPFYNGTIDTKAQTVDPFTGKVVNQYIPNQSRSSDEQEDIRYLSEEERFRHQGKKKAHAWAPSFSASAYLTDNDRVYASYTETVRMPSIFEDTVGFSGSRGYASLTEKFEPERGKTVEVGYVRNLQSLLGAERFADVRINYYHTVIENAFERDIYLKFTQVDKHKTSGIELQARYDNGNYFGDIGLDYRLQNEVCDSASIAALDPTNKFNMSECVDAGFPGGFLRTQLQPKYSINANLGMRFLDERLEIGSRMRYHSRAENNDEKKMMDKYPANYAPLNNSPMRWEPVFVADAYVSYGISDNVKMELLATNILDEYYVDPLTRTMMPAPGRTLRLNFTSHF
>NZ_CP008920.1|WP_004918928.1|2947931_2948687_+|energy-transducer-TonB
MKKTRFLTVTLSVLLHAVIIMGFIHLAQEEKNQQHQAVMDAPVMSIALTHAIEETAPTDSDMTPMVEPEAEIVPPVVVETAQVVLPKKEKKIERPKKKVKEPNKRLSEKKEVEQQKVSTNKITKSAITPQQSQQGETAASSPSMGKVGQPKNGMSNLADTQQINAYREKLRQEVERHKRYPRRAKSMKKQGVAQVQFRLTETGEITSARIVSSSGSELLDNAALAAVEKSQSVGKPPSGFAHIVTFKIEFK
>NZ_CP008920.1|WP_040133045.1|2948706_2949138_-|hypothetical-protein
MKKYLLPISLFVNVVLLITIIVVGALFFNLKSKIDSTVEQIKNGQYAELVKDNTANLIPEGLKNFKKIEPNQSQCDYFYQQIDSLIGYLEENPTIAGSEKYVKQLNNLKKSAEKNPSTLKETACEKGISTINFIGEKISTATE
>NZ_CP008920.1|WP_036943823.1|2949766_2950105_+|hypothetical-protein
MNKVLFSIIATFFFCSSAVAQSQAHDKVRTHENALIALSFTENSTSQANQIAMARHAEKANIEKPTINGLSKTFSNMDAHEKAATALSFTENSQSYAVQRVINQHMARSQTK
>NZ_CP008920.1|WP_036943825.1|2950162_2951806_-|thiamine-pyrophosphate-binding-protein
MYETITVGEAIARTLEQYQVSTVYGVISIHNLPIADAIGRRGVIDFTPSRGEAGAVTMADAHGRFTGLGVALTSTGAGAGNAVGSMIEAMNACSPIIHITGQVEKAYLDMDAGFIHETRDQLGFLKASSKQAFRVHSAEQAVAVLHKAIQVAQTVPCGPVSIEIPIDIQSAQVPLSLLSAPLTVQPLPEATADQVDAIWQKLQHAQRPLLWIGGGALHASDAIKKLADQGVAVISSTHGRGILSDEHPFSLRAFHNADAIDKLMRSCDITLVAGSRLRSNETKTWSLPLPQPLIQIDIDPLAANRNYRADLVVTADCHSILNALASKLEQAKRTISPQWQQQVQEATQQAEAQLRAQCGPYSQLSDAVEQALPDHGIFVRDITVSGSLWGSRLLKATQPLHNIHSLAGAIGLGLAMAIGSAKANPQTPVIGLVGDGGLMLGIGELATMAQEQLPIVLLIMNDHGYGVMRGIQEKYFADRQYYNELLTPSFTRLAESMGIKALTVDKAEDFKSTLQRAVELKQPVVVEVLMENIGKMNFSGPPQKKLF
>NZ_CP008920.1|WP_040133046.1|2951874_2953344_-|aldehyde-dehydrogenase
MKKLDIFVGGRWQQGRGNEMCSRFPGDQHIIATLNSASVSDVEEAVQAAERAWRAPSWRNMPPHQRATILHNVSMLIEEQADELTRLQTLDNGKPWAEARGLVMSAAATARYFAAVCEVSGGELPPRRQPDMMTLSTYQPLGVIAAITPWNSPIASDMQKIAPALAAGNAVILKPAEATPLISLKLAELFEQAGLPSGLLSVLPGKGSIVGDALVRHPLVKKISFTGGTNTGRQLAHIAAEKLITTSLELGGKSPTIVLEDADLNLAAHGVCYGIFSSMGQACIAGSRLFVSRAVYEPFMEKLTALTQQLIIGDPRQERVHVGPLISPEHRESVIRYVNQAIAEGGTIRLGGAIPQDPNLQAGNYYLPTIIEGLNNQASVCQEEIFGPVLVVIPFDNEAQLIEEANDSIYGLAAGIWTQDYTRAFKLADALDVGTVWINTYKVFSISTPFGGFKESGLGREKGLESLKAYMQQKSIFLALNPQPNRWCE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP008920_6	6.1\|2939797\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2939797-2939828	32	NZ_CP008920.1	438359-438390	0	1.0

1. spacer 6.1|2939797|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to position: 438359-438390, mismatch: 0, identity: 1.0

cttacgccccacttctaagtgccaagccgcag	CRISPR spacer
cttacgccccacttctaagtgccaagccgcag	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008920_2	2.6\|2823243\|33\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823243-2823275	33	MW145137	Providencia phage PSTNGR2lys, complete genome	2090-2122	0	1.0
NZ_CP008920_2	2.6\|2823243\|33\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823243-2823275	33	MK047640	Phage NV18, complete genome	27695-27727	0	1.0
NZ_CP008920_3	3.4\|2836669\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836669-2836700	32	MK047640	Phage NV18, complete genome	25738-25769	0	1.0
NZ_CP008920_3	3.4\|2836669\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836669-2836700	32	MK047643	Phage NGI136, complete genome	2655-2686	0	1.0
NZ_CP008920_3	3.4\|2836669\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836669-2836700	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	16415-16446	0	1.0
NZ_CP008920_5	5.3\|2931778\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931778-2931809	32	MW057855	Providencia phage PSTCR3, complete genome	1198-1229	0	1.0
NZ_CP008920_5	5.4\|2931838\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931838-2931869	32	MW057855	Providencia phage PSTCR3, complete genome	1523-1554	0	1.0
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	NZ_CP047287	Proteus cibarius strain G11 plasmid p52, complete sequence	24515-24546	1	0.969
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	NZ_CP053373	Proteus cibarius strain G32 plasmid pG32-51, complete sequence	20826-20857	1	0.969
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	NZ_CP047341	Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence	12325-12356	1	0.969
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	NZ_CP045009	Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence	29655-29686	1	0.969
NZ_CP008920_2	2.1\|2822943\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2822943-2822974	32	MW057855	Providencia phage PSTCR3, complete genome	16414-16445	1	0.969
NZ_CP008920_2	2.5\|2823183\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823183-2823214	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	39520-39551	1	0.969
NZ_CP008920_2	2.6\|2823243\|33\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823243-2823275	33	MK047643	Phage NGI136, complete genome	2835-2867	1	0.97
NZ_CP008920_3	3.4\|2836669\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836669-2836700	32	MK047641	Phage NV21, complete genome	38248-38279	1	0.969
NZ_CP008920_5	5.5\|2931898\|33\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931898-2931930	33	MW145137	Providencia phage PSTNGR2lys, complete genome	39296-39328	1	0.97
NZ_CP008920_1	1.3\|67684\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67684-67715	32	MW057862	Providencia phage PSTCR7lys, complete genome	10716-10747	2	0.938
NZ_CP008920_2	2.3\|2823063\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823063-2823094	32	MW057862	Providencia phage PSTCR7lys, complete genome	10839-10870	2	0.938
NZ_CP008920_4	4.1\|2910239\|32\|NZ_CP008920\|CRISPRCasFinder,CRT	2910239-2910270	32	MW145137	Providencia phage PSTNGR2lys, complete genome	37271-37302	2	0.938
NZ_CP008920_4	4.7\|2910599\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910599-2910630	32	MW057855	Providencia phage PSTCR3, complete genome	3195-3226	2	0.938
NZ_CP008920_2	2.5\|2823183\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823183-2823214	32	LR597645	Escherichia phage Fraca genome assembly, chromosome: 1	43599-43630	3	0.906
NZ_CP008920_2	2.5\|2823183\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823183-2823214	32	NC_019708	Enterobacteria phage mEp235, complete genome	37516-37547	4	0.875
NZ_CP008920_4	4.10\|2910779\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910779-2910810	32	MW057855	Providencia phage PSTCR3, complete genome	30813-30844	4	0.875
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP028945	Vibrio sp. dhg plasmid unnamed1, complete sequence	13869-13900	4	0.875
NZ_CP008920_2	2.5\|2823183\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823183-2823214	32	LR597645	Escherichia phage Fraca genome assembly, chromosome: 1	122-153	5	0.844
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019082	Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome	27653-27684	5	0.844
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019094	Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome	27472-27503	6	0.812
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019156	Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome	27472-27503	6	0.812
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019054	Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome	27472-27503	6	0.812
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019089	Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome	26769-26800	6	0.812
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	AP014357	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C89, * SEQUENCING IN PROGRESS *	6455-6486	6	0.812
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP016764	Citrobacter freundii strain B38 plasmid pOZ181, complete sequence	229294-229324	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_KX810825	Salmonella enterica subsp. enterica serovar Typhimurium strain MU1 plasmid pIMP4-SEM1, complete sequence	200634-200664	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP035215	Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence	102997-103027	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP027678	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-1, complete sequence	220055-220085	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP042506	Leclercia adecarboxylata strain E1 plasmid pE1_001, complete sequence	121220-121250	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP020529	Enterobacter cloacae strain 174 plasmid unnamed1, complete sequence	330602-330632	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	LC556211	Enterobacter cloacae CC32 plasmid pCC32 DNA, complete sequence	240258-240288	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	234512-234542	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP022696	Citrobacter farmeri strain AUSMDU00008141 plasmid pAUSMDU8141-1, complete sequence	214359-214389	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	CP049309	Salmonella enterica subsp. enterica serovar Johannesburg strain CVM N58011 plasmid p58011, complete sequence	259503-259533	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP042494	Leclercia adecarboxylata strain E61 plasmid pE61_001, complete sequence	121220-121250	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP039271	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.1, complete sequence	122728-122758	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP023570	Enterobacter hormaechei strain BW plasmid unnamed2, complete sequence	122057-122087	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP029248	Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_D, complete sequence	152448-152478	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP017451	Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence	313631-313661	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP043927	Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence	353745-353775	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP042525	Citrobacter freundii strain E11 plasmid pE11_001, complete sequence	121220-121250	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP022533	Enterobacter hormaechei strain MS7884A plasmid pMS7884A, complete sequence	27572-27602	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP024910	Enterobacter hormaechei subsp. xiangfangensis strain OSUKPC4_L plasmid pOSUKPC4, complete sequence	151223-151253	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP018017	Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence	241624-241654	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP042489	Enterobacter hormaechei strain C15 plasmid pC15_001, complete sequence	124787-124817	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_MG845200	Klebsiella oxytoca strain TJ11 plasmid pNDM-TJ11, complete sequence	219172-219202	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_MG845201	Klebsiella pneumoniae strain TJ03 plasmid pNDM-TJ03, complete sequence	219256-219286	6	0.806
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_MF344582	Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence	192340-192370	6	0.806
NZ_CP008920_1	1.5\|67804\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67804-67835	32	MH321493	Salmonella phage Skate, complete genome	13152-13183	7	0.781
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	NZ_CP014328	Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence	1223-1254	7	0.781
NZ_CP008920_3	3.5\|2836729\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836729-2836760	32	NZ_CP013927	Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence	58489-58520	7	0.781
NZ_CP008920_4	4.7\|2910599\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910599-2910630	32	NZ_CP031295	Escherichia coli strain EC17GD31 plasmid pGD31-F1928, complete sequence	24625-24656	7	0.781
NZ_CP008920_4	4.7\|2910599\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910599-2910630	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	376117-376148	7	0.781
NZ_CP008920_4	4.7\|2910599\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910599-2910630	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	31005-31036	7	0.781
NZ_CP008920_5	5.3\|2931778\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931778-2931809	32	MN098327	Klebsiella phage Mulock, complete genome	7120-7151	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_LT853886	Xanthomonas fragariae strain PD5205 plasmid pPD5205-30, complete sequence	16968-16999	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP016831	Xanthomonas fragariae isolate Fap21 plasmid pFap21-1, complete sequence	5047-5078	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP040603	Xanthomonas oryzae pv. oryzae strain IXO704 plasmid pIXO-704, complete sequence	11845-11876	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP016834	Xanthomonas fragariae isolate Fap29 plasmid pFap29-1, complete sequence	18556-18587	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NC_017555	Xanthomonas albilineans str. GPE PC73, plasmid, complete genome	12153-12184	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP033203	Xanthomonas oryzae pv. oryzae strain BXO1 plasmid pBXO1-2, complete sequence	12136-12167	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_LT853883	Xanthomonas fragariae strain PD885 plasmid pPD885-29, complete sequence	15731-15762	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KJ019069	Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome	26694-26725	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NC_031900	Synechococcus phage S-CAM4 isolate 0809SB33, complete genome	26694-26725	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KU686202	Synechococcus phage S-CAM4 isolate 1010NB23, complete genome	26773-26804	7	0.781
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	KU686200	Synechococcus phage S-CAM4 isolate 0309CC44, complete genome	26692-26723	7	0.781
NZ_CP008920_5	5.10\|2932200\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932200-2932231	32	MK448881	Streptococcus phage Javan240, complete genome	9187-9218	7	0.781
NZ_CP008920_5	5.11\|2932260\|31\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932260-2932290	31	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	44104-44134	7	0.774
NZ_CP008920_1	1.3\|67684\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67684-67715	32	NC_007603	Enterobacteria phage RTP, complete genome	38413-38444	8	0.75
NZ_CP008920_1	1.3\|67684\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67684-67715	32	NC_047810	Escherichia phage vB_EcoS-IME253, complete genome	572-603	8	0.75
NZ_CP008920_1	1.3\|67684\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67684-67715	32	AM156909	Bacteriophage RTP, complete genome	38413-38444	8	0.75
NZ_CP008920_1	1.3\|67684\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67684-67715	32	MT511058	Escherichia phage vB_EcoD_SU57, complete genome	36978-37009	8	0.75
NZ_CP008920_3	3.1\|2836489\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836489-2836520	32	MH617614	Microviridae sp. isolate ctbj654, complete genome	4679-4710	8	0.75
NZ_CP008920_3	3.2\|2836549\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836549-2836580	32	NC_023570	Acinetobacter phage Petty, complete genome	16278-16309	8	0.75
NZ_CP008920_3	3.12\|2837150\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2837150-2837181	32	MK250029	Prevotella phage Lak-C1, complete genome	479751-479782	8	0.75
NZ_CP008920_3	3.12\|2837150\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2837150-2837181	32	MK250016	Prevotella phage Lak-A1, complete genome	515954-515985	8	0.75
NZ_CP008920_3	3.12\|2837150\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2837150-2837181	32	MK250019	Prevotella phage Lak-A2, complete genome	432339-432370	8	0.75
NZ_CP008920_4	4.7\|2910599\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910599-2910630	32	NZ_CP006993	Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence	105672-105703	8	0.75
NZ_CP008920_4	4.10\|2910779\|32\|NZ_CP008920\|CRISPRCasFinder,CRT,PILER-CR	2910779-2910810	32	HM035024	Shigella phage Shfl1, complete genome	46252-46283	8	0.75
NZ_CP008920_5	5.10\|2932200\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932200-2932231	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	6659-6690	8	0.75
NZ_CP008920_1	1.6\|67864\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	67864-67895	32	KF623293	Vibrio phage SHOU24, complete genome	53770-53801	9	0.719
NZ_CP008920_3	3.5\|2836729\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836729-2836760	32	NZ_CP024792	Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence	127541-127572	9	0.719
NZ_CP008920_3	3.5\|2836729\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836729-2836760	32	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	68904-68935	9	0.719
NZ_CP008920_3	3.5\|2836729\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836729-2836760	32	NZ_CP025811	Sulfitobacter sp. SK025 plasmid unnamed3, complete sequence	132444-132475	9	0.719
NZ_CP008920_3	3.6\|2836789\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836789-2836820	32	NZ_CP016891	Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence	63163-63194	9	0.719
NZ_CP008920_5	5.3\|2931778\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931778-2931809	32	KT588074	Acinetobacter phage Ab105-1phi, complete genome	22641-22672	9	0.719
NZ_CP008920_5	5.3\|2931778\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931778-2931809	32	MK340941	Acinetobacter phage AbTJ, complete genome	22995-23026	9	0.719
NZ_CP008920_5	5.6\|2931959\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931959-2931990	32	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	129420-129451	9	0.719
NZ_CP008920_5	5.6\|2931959\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931959-2931990	32	NZ_CP029174	Methylobacterium sp. DM1 plasmid pLVM1, complete sequence	229479-229510	9	0.719
NZ_CP008920_2	2.5\|2823183\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2823183-2823214	32	LN997844	Streptomyces reticuli genome assembly TUE45, plasmid : III	93222-93253	10	0.688
NZ_CP008920_3	3.3\|2836609\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836609-2836640	32	NZ_CP029540	Aquitalea sp. USM4 plasmid unnamed, complete sequence	29478-29509	10	0.688
NZ_CP008920_5	5.1\|2931658\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931658-2931689	32	AP013478	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62	16543-16574	10	0.688
NZ_CP008920_5	5.6\|2931959\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2931959-2931990	32	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	217991-218022	10	0.688
NZ_CP008920_5	5.8\|2932080\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932080-2932111	32	MN693652	Marine virus AFVG_250M189, complete genome	14498-14529	10	0.688
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	NZ_CP014581	Burkholderia sp. OLGA172 plasmid pOLGA2, complete sequence	81168-81199	10	0.688
NZ_CP008920_5	5.14\|2932439\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932439-2932470	32	NZ_CP025132	Planococcus sp. MB-3u-03 plasmid unnamed9	270-301	10	0.688
NZ_CP008920_3	3.1\|2836489\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2836489-2836520	32	NZ_CP051739	Escherichia coli strain SCU-105 plasmid pSCU-105-1, complete sequence	129095-129126	11	0.656
NZ_CP008920_5	5.9\|2932140\|32\|NZ_CP008920\|PILER-CR,CRISPRCasFinder,CRT	2932140-2932171	32	MH494197	Escherichia phage CMSTMSU, complete genome	267839-267870	11	0.656

1. spacer 2.6|2823243|33|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 0, identity: 1.0

aaaggaattgcgtgatagatggcaaactcccct	CRISPR spacer
aaaggaattgcgtgatagatggcaaactcccct	Protospacer
*********************************

2. spacer 2.6|2823243|33|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 0, identity: 1.0

aaaggaattgcgtgatagatggcaaactcccct	CRISPR spacer
aaaggaattgcgtgatagatggcaaactcccct	Protospacer
*********************************

3. spacer 3.4|2836669|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 0, identity: 1.0

tgtattagcatgagtaatacatatccgattat	CRISPR spacer
tgtattagcatgagtaatacatatccgattat	Protospacer
********************************

4. spacer 3.4|2836669|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK047643 (Phage NGI136, complete genome) position: , mismatch: 0, identity: 1.0

tgtattagcatgagtaatacatatccgattat	CRISPR spacer
tgtattagcatgagtaatacatatccgattat	Protospacer
********************************

5. spacer 3.4|2836669|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 0, identity: 1.0

tgtattagcatgagtaatacatatccgattat	CRISPR spacer
tgtattagcatgagtaatacatatccgattat	Protospacer
********************************

6. spacer 5.3|2931778|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW057855 (Providencia phage PSTCR3, complete genome) position: , mismatch: 0, identity: 1.0

ttgttagcgggaatacccaccaacacatccat	CRISPR spacer
ttgttagcgggaatacccaccaacacatccat	Protospacer
********************************

7. spacer 5.4|2931838|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW057855 (Providencia phage PSTCR3, complete genome) position: , mismatch: 0, identity: 1.0

tttagctctacgtttctgtagcgttgcttctg	CRISPR spacer
tttagctctacgtttctgtagcgttgcttctg	Protospacer
********************************

8. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047287 (Proteus cibarius strain G11 plasmid p52, complete sequence) position: , mismatch: 1, identity: 0.969

taagtcataaagcgctttttgattctctttga	CRISPR spacer
taagccataaagcgctttttgattctctttga	Protospacer
****.***************************

9. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053373 (Proteus cibarius strain G32 plasmid pG32-51, complete sequence) position: , mismatch: 1, identity: 0.969

taagtcataaagcgctttttgattctctttga	CRISPR spacer
taagccataaagcgctttttgattctctttga	Protospacer
****.***************************

10. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047341 (Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence) position: , mismatch: 1, identity: 0.969

taagtcataaagcgctttttgattctctttga	CRISPR spacer
taagccataaagcgctttttgattctctttga	Protospacer
****.***************************

11. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045009 (Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence) position: , mismatch: 1, identity: 0.969

taagtcataaagcgctttttgattctctttga	CRISPR spacer
taagccataaagcgctttttgattctctttga	Protospacer
****.***************************

12. spacer 2.1|2822943|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW057855 (Providencia phage PSTCR3, complete genome) position: , mismatch: 1, identity: 0.969

cgtatctcttgcgggtttctttttaaaatcac	CRISPR spacer
cgcatctcttgcgggtttctttttaaaatcac	Protospacer
**.*****************************

13. spacer 2.5|2823183|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 1, identity: 0.969

ttacctcttttcgcatcaccgcaggttagaaa	CRISPR spacer
ttacctcttttcacatcaccgcaggttagaaa	Protospacer
************.*******************

14. spacer 2.6|2823243|33|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK047643 (Phage NGI136, complete genome) position: , mismatch: 1, identity: 0.97

aaaggaattgcgtgatagatggcaaactcccct	CRISPR spacer
aaatgaattgcgtgatagatggcaaactcccct	Protospacer
*** *****************************

15. spacer 3.4|2836669|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 1, identity: 0.969

tgtattagcatgagtaatacatatccgattat	CRISPR spacer
tgtattagtatgagtaatacatatccgattat	Protospacer
********.***********************

16. spacer 5.5|2931898|33|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 1, identity: 0.97

aaagtatgctttagctgagttcgctagttttgt	CRISPR spacer
aaagtatgctttggctgagttcgctagttttgt	Protospacer
************.********************

17. spacer 1.3|67684|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW057862 (Providencia phage PSTCR7lys, complete genome) position: , mismatch: 2, identity: 0.938

taatccgatgctggttattacgcttgcagagt	CRISPR spacer
taatccgatgttggttattgcgcttgcagagt	Protospacer
**********.********.************

18. spacer 2.3|2823063|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MW057862 (Providencia phage PSTCR7lys, complete genome) position: , mismatch: 2, identity: 0.938

ttatcttcgtttctgtgtgctacctgagtacc	CRISPR spacer
ttatcttcgtttctatgtgctacctgagtgcc	Protospacer
**************.**************.**

19. spacer 4.1|2910239|32|NZ_CP008920|CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 2, identity: 0.938

atgacagagttcgtcatgatgctaaaagctaa	CRISPR spacer
atgaccgagttcgtcatgatgttaaaagctaa	Protospacer
***** ***************.**********

20. spacer 4.7|2910599|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to MW057855 (Providencia phage PSTCR3, complete genome) position: , mismatch: 2, identity: 0.938

acgcaccggagatatcagccattttcgtcaca	CRISPR spacer
acgcaccggagatatctgccattttcgccaca	Protospacer
**************** **********.****

21. spacer 2.5|2823183|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to LR597645 (Escherichia phage Fraca genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.906

ttacctcttttcgcatcaccgcaggttagaaa	CRISPR spacer
taacctcttttcacatcgccgcaggttagaaa	Protospacer
* **********.****.**************

22. spacer 2.5|2823183|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_019708 (Enterobacteria phage mEp235, complete genome) position: , mismatch: 4, identity: 0.875

ttacctcttttcgcatcaccgcaggttagaaa	CRISPR spacer
tagcctcttttcacatcgccgcaggttagaaa	Protospacer
* .*********.****.**************

23. spacer 4.10|2910779|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to MW057855 (Providencia phage PSTCR3, complete genome) position: , mismatch: 4, identity: 0.875

aatacaattattgatatcgcaagtagcataaa	CRISPR spacer
aaagcaattattgatatcgcaagcagcatgaa	Protospacer
** .*******************.*****.**

24. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028945 (Vibrio sp. dhg plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.875

aaccatcaacaccaacaactggaactattccc	CRISPR spacer
atccatcaacaccaacaattggaattattcca	Protospacer
* ****************.*****.******

25. spacer 2.5|2823183|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to LR597645 (Escherichia phage Fraca genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.844

ttacctcttttcgcatcaccgcaggttagaaa	CRISPR spacer
gatcctcttttcacatcgccgcaggttagaaa	Protospacer
   *********.****.**************

26. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019082 (Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome) position: , mismatch: 5, identity: 0.844

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
aaccatcaccaccaacaactgtaa-tattctgg	Protospacer
******** ************ ** *****.

27. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019094 (Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome) position: , mismatch: 6, identity: 0.812

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
aaccatcaccaccaacaactgtaa-tgttctgg	Protospacer
******** ************ ** *.***.

28. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019156 (Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome) position: , mismatch: 6, identity: 0.812

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
aaccatcaccaccaacaactgtaa-tgttctgg	Protospacer
******** ************ ** *.***.

29. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019054 (Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome) position: , mismatch: 6, identity: 0.812

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
aaccatcaccaccaacaactgtaa-tgttctgg	Protospacer
******** ************ ** *.***.

30. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019089 (Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome) position: , mismatch: 6, identity: 0.812

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
aaccatcaccaccaacaactgtaa-tgttctgg	Protospacer
******** ************ ** *.***.

31. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to AP014357 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
caccatcaccaccaacaactgtaa-tattctgg	Protospacer
 ******* ************ ** *****.

32. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016764 (Citrobacter freundii strain B38 plasmid pOZ181, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

33. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX810825 (Salmonella enterica subsp. enterica serovar Typhimurium strain MU1 plasmid pIMP4-SEM1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

34. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035215 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

35. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027678 (Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

36. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042506 (Leclercia adecarboxylata strain E1 plasmid pE1_001, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

37. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020529 (Enterobacter cloacae strain 174 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

38. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to LC556211 (Enterobacter cloacae CC32 plasmid pCC32 DNA, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

39. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

40. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022696 (Citrobacter farmeri strain AUSMDU00008141 plasmid pAUSMDU8141-1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

41. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to CP049309 (Salmonella enterica subsp. enterica serovar Johannesburg strain CVM N58011 plasmid p58011, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

42. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042494 (Leclercia adecarboxylata strain E61 plasmid pE61_001, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

43. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039271 (Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

44. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023570 (Enterobacter hormaechei strain BW plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

45. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029248 (Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_D, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

46. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017451 (Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

47. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043927 (Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

48. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042525 (Citrobacter freundii strain E11 plasmid pE11_001, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

49. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022533 (Enterobacter hormaechei strain MS7884A plasmid pMS7884A, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

50. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024910 (Enterobacter hormaechei subsp. xiangfangensis strain OSUKPC4_L plasmid pOSUKPC4, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

51. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018017 (Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

52. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042489 (Enterobacter hormaechei strain C15 plasmid pC15_001, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

53. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG845200 (Klebsiella oxytoca strain TJ11 plasmid pNDM-TJ11, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

54. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG845201 (Klebsiella pneumoniae strain TJ03 plasmid pNDM-TJ03, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

55. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF344582 (Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence) position: , mismatch: 6, identity: 0.806

-acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
cacct-gcggaaaagatgctggcgcaggaact	Protospacer
 ** * .*.************* *** *****

56. spacer 1.5|67804|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MH321493 (Salmonella phage Skate, complete genome) position: , mismatch: 7, identity: 0.781

-atgtcataattaattcattagtgacatgattt	CRISPR spacer
tgtgtt-ttgttaattcattaatgacatcattt	Protospacer
 .***. * .***********.****** ****

57. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014328 (Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

taagtcataaagcgctttttgattctctttga	CRISPR spacer
ccaatcacaaaacgctttttgattctcttggt	Protospacer
. *.***.***.***************** *

58. spacer 3.5|2836729|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013927 (Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence) position: , mismatch: 7, identity: 0.781

tacatcata-gaacatgcagaactacttgctga	CRISPR spacer
-aaaccaagtgaacatgcagaattatttgctga	Protospacer
 * *.** . ************.**.*******

59. spacer 4.7|2910599|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031295 (Escherichia coli strain EC17GD31 plasmid pGD31-F1928, complete sequence) position: , mismatch: 7, identity: 0.781

acgcaccggagatatcagccattttcgtcaca-	CRISPR spacer
tcgcaccggatttatcagccatttt-gtgattg	Protospacer
 *********  ************* ** *.

60. spacer 4.7|2910599|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgcaccggagatatcagccattttcgtcaca-	CRISPR spacer
cagcaccggatttatcagccatttt-gtcattg	Protospacer
  ********  ************* ****.

61. spacer 4.7|2910599|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 7, identity: 0.781

acgcaccggagatatcagccattttcgtcaca-	CRISPR spacer
cagcaccggatttatcagccatttt-gtcattg	Protospacer
  ********  ************* ****.

62. spacer 5.3|2931778|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 7, identity: 0.781

ttgttagcgggaatacccaccaacacatccat	CRISPR spacer
ttatccgcaggaattcccaccaacacatcagt	Protospacer
**.*. **.***** ************** .*

63. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT853886 (Xanthomonas fragariae strain PD5205 plasmid pPD5205-30, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

64. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016831 (Xanthomonas fragariae isolate Fap21 plasmid pFap21-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

65. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040603 (Xanthomonas oryzae pv. oryzae strain IXO704 plasmid pIXO-704, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

66. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016834 (Xanthomonas fragariae isolate Fap29 plasmid pFap29-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

67. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_017555 (Xanthomonas albilineans str. GPE PC73, plasmid, complete genome) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

68. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033203 (Xanthomonas oryzae pv. oryzae strain BXO1 plasmid pBXO1-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

69. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT853883 (Xanthomonas fragariae strain PD885 plasmid pPD885-29, complete sequence) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaact----attccc	CRISPR spacer
atccatcatcatcaacaactggaacttgagat----	Protospacer
* ****** **.**************    **

70. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KJ019069 (Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
taccatcaccaccaacaactgtaa-tgttctgg	Protospacer
 ******* ************ ** *.***.

71. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_031900 (Synechococcus phage S-CAM4 isolate 0809SB33, complete genome) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
taccatcaccaccaacaactgtaa-tgttctgg	Protospacer
 ******* ************ ** *.***.

72. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KU686202 (Synechococcus phage S-CAM4 isolate 1010NB23, complete genome) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
taccatcaccaccaacaactgtaa-tgttctgg	Protospacer
 ******* ************ ** *.***.

73. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KU686200 (Synechococcus phage S-CAM4 isolate 0309CC44, complete genome) position: , mismatch: 7, identity: 0.781

aaccatcaacaccaacaactggaactattccc-	CRISPR spacer
taccatcaccaccaacaactgtaa-tgttctgg	Protospacer
 ******* ************ ** *.***.

74. spacer 5.10|2932200|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK448881 (Streptococcus phage Javan240, complete genome) position: , mismatch: 7, identity: 0.781

acgtaaacccgctacgctgaacgcttggcatg	CRISPR spacer
tcgttttcccgcaacgctgaaagcttggcacg	Protospacer
 ***   ***** ******** ********.*

75. spacer 5.11|2932260|31|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgtaacagaaaagatgctggggcatgaact	CRISPR spacer
tcccagcaaaaaagatgctgggacatgaatt	Protospacer
 * .*.**.*************.******.*

76. spacer 1.3|67684|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_007603 (Enterobacteria phage RTP, complete genome) position: , mismatch: 8, identity: 0.75

taatccgatgctggttattacgcttgcagagt	CRISPR spacer
tatcaaggtgatggttattacggttgcagaga	Protospacer
** .  *.** *********** ********

77. spacer 1.3|67684|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_047810 (Escherichia phage vB_EcoS-IME253, complete genome) position: , mismatch: 8, identity: 0.75

taatccgatgctggttattacgcttgcagagt	CRISPR spacer
tatcaaggtgatggttattacggttgcagaga	Protospacer
** .  *.** *********** ********

78. spacer 1.3|67684|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to AM156909 (Bacteriophage RTP, complete genome) position: , mismatch: 8, identity: 0.75

taatccgatgctggttattacgcttgcagagt	CRISPR spacer
tatcaaggtgatggttattacggttgcagaga	Protospacer
** .  *.** *********** ********

79. spacer 1.3|67684|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MT511058 (Escherichia phage vB_EcoD_SU57, complete genome) position: , mismatch: 8, identity: 0.75

taatccgatgctggttattacgcttgcagagt	CRISPR spacer
tatcaaggtgatggttattacggttgcagaga	Protospacer
** .  *.** *********** ********

80. spacer 3.1|2836489|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MH617614 (Microviridae sp. isolate ctbj654, complete genome) position: , mismatch: 8, identity: 0.75

ggtcagaaaaaaatcactcatgacagcaatcc	CRISPR spacer
catgatcaaaaaagcactcacgacagcaatcg	Protospacer
 .* *  ****** ******.**********

81. spacer 3.2|2836549|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_023570 (Acinetobacter phage Petty, complete genome) position: , mismatch: 8, identity: 0.75

cgttaccgaactacataatggatattagatat	CRISPR spacer
gcttaccgaagtacataatggatatgcactac	Protospacer
  ******** **************  . **.

82. spacer 3.12|2837150|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 8, identity: 0.75

tgtatttgcattcataccggcatatttcattg-	CRISPR spacer
ctgatttgcagtcatacctgcatattt-ataat	Protospacer
.  ******* ******* ******** ** .

83. spacer 3.12|2837150|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 8, identity: 0.75

tgtatttgcattcataccggcatatttcattg-	CRISPR spacer
ctgatttgcagtcatacctgcatattt-ataat	Protospacer
.  ******* ******* ******** ** .

84. spacer 3.12|2837150|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 8, identity: 0.75

tgtatttgcattcataccggcatatttcattg-	CRISPR spacer
ctgatttgcagtcatacctgcatattt-ataat	Protospacer
.  ******* ******* ******** ** .

85. spacer 4.7|2910599|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006993 (Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence) position: , mismatch: 8, identity: 0.75

acgcaccggagatatcagccattttcgtcaca	CRISPR spacer
tttcgggggacataccagccattttcgtcaca	Protospacer
 . *.  *** ***.*****************

86. spacer 4.10|2910779|32|NZ_CP008920|CRISPRCasFinder,CRT,PILER-CR matches to HM035024 (Shigella phage Shfl1, complete genome) position: , mismatch: 8, identity: 0.75

-aatacaattattgatatcgcaagtagcataaa	CRISPR spacer
caaca-aattattgagatcgcaaatagcactgg	Protospacer
 **.* ********* *******.*****. ..

87. spacer 5.10|2932200|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacccgctacgctgaacgcttggcatg	CRISPR spacer
ttgatagcccgctatactgaacgcttggcaag	Protospacer
 .*  *.*******..************** *

88. spacer 1.6|67864|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KF623293 (Vibrio phage SHOU24, complete genome) position: , mismatch: 9, identity: 0.719

taagtcataaagcgctttttgattctctttga	CRISPR spacer
gccagcagtaagcgctttttcattttctttga	Protospacer
   . **  *********** ***.*******

89. spacer 3.5|2836729|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024792 (Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence) position: , mismatch: 9, identity: 0.719

tacatcatagaacatgcagaactacttgctga	CRISPR spacer
aaccctcaagaaaatgctgaactacttgctgc	Protospacer
 ** ..  **** **** *************

90. spacer 3.5|2836729|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 9, identity: 0.719

tacatcatagaacatgcagaactacttgctga	CRISPR spacer
aaccctcaagaaaatgctgaactacttgctgc	Protospacer
 ** ..  **** **** *************

91. spacer 3.5|2836729|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025811 (Sulfitobacter sp. SK025 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tacatcatagaacatgcagaactacttgctga	CRISPR spacer
tgctgagatgagcatgcagaacgacttgctga	Protospacer
*.*   .  **.********** *********

92. spacer 3.6|2836789|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gatcagagctgaaataaggaagaaagcaaggg	CRISPR spacer
gctcagagcttacataaggaagaaatgacaaa	Protospacer
* ******** * ************  * ...

93. spacer 5.3|2931778|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to KT588074 (Acinetobacter phage Ab105-1phi, complete genome) position: , mismatch: 9, identity: 0.719

ttgttagcgggaatacccaccaacacatccat	CRISPR spacer
tccccatgtggaatacctaccaaaacatccat	Protospacer
*. ..*   ********.***** ********

94. spacer 5.3|2931778|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MK340941 (Acinetobacter phage AbTJ, complete genome) position: , mismatch: 9, identity: 0.719

ttgttagcgggaatacccaccaacacatccat	CRISPR spacer
tccccatgtggaatacctaccaaaacatccat	Protospacer
*. ..*   ********.***** ********

95. spacer 5.6|2931959|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaagaacatccgcagcactgcgagcgtttt	CRISPR spacer
gaggggaacatccgcatcacggcgagcgcgta	Protospacer
.*...*********** *** *******. *

96. spacer 5.6|2931959|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029174 (Methylobacterium sp. DM1 plasmid pLVM1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaagaacatccgcagcactgcgagcgtttt	CRISPR spacer
gaggggaacatccgcatcacggcgagcgcgta	Protospacer
.*...*********** *** *******. *

97. spacer 2.5|2823183|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to LN997844 (Streptomyces reticuli genome assembly TUE45, plasmid : III) position: , mismatch: 10, identity: 0.688

ttacctcttttcgcatcaccgcaggttagaaa	CRISPR spacer
acaaacggtttcgcatcaccgcaggtcaaaac	Protospacer
 .*  .  ******************.*.**

98. spacer 3.3|2836609|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029540 (Aquitalea sp. USM4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ttactcagagcatcttgaagcagggcgttttg	CRISPR spacer
cggatatcagcatcttgaagcaggccggtttt	Protospacer
. . *   **************** ** ***

99. spacer 5.1|2931658|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to AP013478 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62) position: , mismatch: 10, identity: 0.688

tgaatataacaatggtgacaatctaagcgaaa	CRISPR spacer
ggaatttaacaatggtgacaatatagcaactg	Protospacer
 **** **************** **.  .  .

100. spacer 5.6|2931959|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 10, identity: 0.688

aaaaagaacatccgcagcactgcgagcgtttt	CRISPR spacer
gccgggaacatccgcatcacggcgagcgcgta	Protospacer
.  ..*********** *** *******. *

101. spacer 5.8|2932080|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MN693652 (Marine virus AFVG_250M189, complete genome) position: , mismatch: 10, identity: 0.688

tttcatcaagaaaggtttatgttggtattatt	CRISPR spacer
acagatcaagaacagtttatgttggtagaaga	Protospacer
 .  ******** .*************  *

102. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014581 (Burkholderia sp. OLGA172 plasmid pOLGA2, complete sequence) position: , mismatch: 10, identity: 0.688

aaccatcaacaccaacaactggaactattccc	CRISPR spacer
ctccatcaacacaaacaaccggaacaaccggt	Protospacer
  ********** ******.***** *..  .

103. spacer 5.14|2932439|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025132 (Planococcus sp. MB-3u-03 plasmid unnamed9) position: , mismatch: 10, identity: 0.688

agtggcttcatttgttcaacggtatcacccgc	CRISPR spacer
ccgtgcttcaattgttcaacggcatcaatgcc	Protospacer
    ****** ***********.**** .  *

104. spacer 3.1|2836489|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051739 (Escherichia coli strain SCU-105 plasmid pSCU-105-1, complete sequence) position: , mismatch: 11, identity: 0.656

ggtcagaaaaaaatcactcatgacagcaatcc	CRISPR spacer
aacaccaaaaaaagcagtcatgacagcaaaaa	Protospacer
...   ******* ** ************

105. spacer 5.9|2932140|32|NZ_CP008920|PILER-CR,CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 11, identity: 0.656

aaccatcaacaccaacaactggaactattccc	CRISPR spacer
ggtgtacaaaaccaacaactggtactattagt	Protospacer
...   *** ************ ******  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2322897 : 2333489

Mycobacterium_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004917599.1\|2322897_2324100_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	6.4e-28	36.8
WP_004917602.1\|2324826_2325798_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.6e-133	72.8
WP_071599640.1\|2325811_2327944_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.4e-213	52.2
WP_004917606.1\|2327954_2328368_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	5.3e-14	41.9
WP_004917608.1\|2328377_2328605_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.6e-17	56.2
WP_004917609.1\|2328895_2329366_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EL10	Moumouvirus	7.6e-17	35.7
WP_014657708.1\|2329572_2329782_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	7.7e-22	79.7
WP_004917612.1\|2329924_2330890_-	lipoyl synthase	NA	NA	NA	NA
WP_014657709.1\|2331013_2331658_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_004917614.1\|2331917_2332181_-	YbeD family protein	NA	NA	NA	NA
WP_004917615.1\|2332280_2333489_-	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	8.8e-110	50.9

DBSCAN-SWA_2

2507306 : 2515260

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040132936.1\|2507306_2509727_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	1.5e-140	38.6
WP_040132937.1\|2509723_2510365_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	8.1e-62	57.0
WP_040132938.1\|2510361_2511264_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_040132939.1\|2511275_2511848_+	hypothetical protein	A0A077SLS7	Escherichia_phage	9.2e-17	39.2
WP_040132940.1\|2512066_2512318_+	uridine kinase	NA	NA	NA	NA
WP_052038355.1\|2512566_2513100_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.7e-20	33.9
WP_004917981.1\|2513982_2514627_+	uridine kinase	A0A1V0SAA3	Catovirus	1.4e-37	41.2
WP_004917983.1\|2514678_2515260_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	7.4e-30	41.1

DBSCAN-SWA_3

2560014 : 2570710

Paramecium_bursaria_Chlorella_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040132953.1\|2560014_2560860_+	hydrolase	M1I6H3	Paramecium_bursaria_Chlorella_virus	7.0e-21	29.3
WP_004918066.1\|2560856_2561606_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_014657829.1\|2561749_2562688_+	DUF1177 domain-containing protein	NA	NA	NA	NA
WP_004918068.1\|2562791_2563043_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-15	56.7
WP_004918070.1\|2563426_2563747_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.7e-15	48.4
WP_004918072.1\|2563777_2566063_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.4e-170	42.9
WP_004244560.1\|2566129_2566348_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_004918075.1\|2566488_2567190_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_040132954.1\|2567198_2568941_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	5.9e-22	24.9
WP_040132955.1\|2568943_2570710_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	F2Y302	Organic_Lake_phycodnavirus	1.4e-15	32.8

DBSCAN-SWA_4

2862243 : 2924937

Cronobacter_phage(28.57%)

terminase,holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004918722.1\|2862243_2864286_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.2e-21	28.2
WP_014658086.1\|2864497_2865094_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_004918726.1\|2865128_2866607_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_004918727.1\|2866646_2868314_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	5.2e-52	30.7
WP_004918729.1\|2868545_2868893_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_040133019.1\|2869570_2871043_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_004918732.1\|2871099_2871309_-	hypothetical protein	NA	NA	NA	NA
WP_004918734.1\|2871634_2872507_+	DMT family transporter	NA	NA	NA	NA
WP_004918736.1\|2872667_2872988_+	hypothetical protein	NA	NA	NA	NA
WP_040133020.1\|2873036_2874131_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_014658090.1\|2874727_2876044_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_040133451.1\|2876421_2877126_+	RNA ligase family protein	A0A292GKV8	Xanthomonas_phage	4.2e-19	32.1
WP_040133021.1\|2877122_2878250_+	AAA family ATPase	NA	NA	NA	NA
WP_036943769.1\|2878306_2879362_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_004918749.1\|2879539_2880973_-	anion permease	NA	NA	NA	NA
WP_040133022.1\|2881209_2882115_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_004918752.1\|2882095_2882641_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_004918753.1\|2882645_2884172_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_004918754.1\|2884182_2885079_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_004918755.1\|2885078_2885375_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_036943776.1\|2885371_2886448_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_014658097.1\|2886819_2888457_+	sensor histidine kinase DpiB	NA	NA	NA	NA
WP_004918761.1\|2888449_2889133_+	two-component response regulator DpiA	NA	NA	NA	NA
WP_040133023.1\|2889198_2890230_-	sel1 repeat family protein	NA	NA	NA	NA
WP_004918766.1\|2891268_2892744_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_014658099.1\|2892884_2893373_-	DUF4822 domain-containing protein	NA	NA	NA	NA
WP_004918770.1\|2893553_2894537_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_040133024.1\|2894664_2895588_-	transporter	NA	NA	NA	NA
WP_014658101.1\|2896145_2898935_+	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_004918779.1\|2898921_2900394_+	DUF3999 family protein	NA	NA	NA	NA
WP_014658102.1\|2900595_2900862_+	hypothetical protein	NA	NA	NA	NA
WP_004918784.1\|2900935_2901340_+	GFA family protein	NA	NA	NA	NA
WP_014658103.1\|2901548_2901965_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_014658104.1\|2902259_2903813_+	AbgT family transporter	NA	NA	NA	NA
WP_040133025.1\|2903848_2905081_+	peptidase T	NA	NA	NA	NA
WP_004918792.1\|2905302_2905989_+	response regulator	NA	NA	NA	NA
WP_004918794.1\|2905955_2907788_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_014658106.1\|2907845_2908394_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_040133027.1\|2911589_2912363_+	antitermination protein	F1C595	Cronobacter_phage	4.1e-68	49.2
WP_014658133.1\|2912677_2913010_-	hypothetical protein	NA	NA	NA	NA
WP_120752678.1\|2913198_2913318_+	hypothetical protein	NA	NA	NA	NA
WP_105874340.1\|2913529_2913778_+\|holin	holin	F1C5D1	Cronobacter_phage	1.0e-20	56.1
WP_040133028.1\|2913770_2914163_+	M15 family metallopeptidase	A0A1P8DTE2	Proteus_phage	3.6e-44	86.2
WP_040133029.1\|2914181_2914559_+	hypothetical protein	NA	NA	NA	NA
WP_040133030.1\|2914893_2915223_+	hypothetical protein	NA	NA	NA	NA
WP_040133031.1\|2915261_2915531_+	hypothetical protein	NA	NA	NA	NA
WP_040133032.1\|2915605_2916619_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.0e-34	35.8
WP_040132423.1\|2916866_2917901_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_040133033.1\|2918179_2918800_-	sel1 repeat family protein	NA	NA	NA	NA
WP_040133034.1\|2919550_2920129_+	hypothetical protein	NA	NA	NA	NA
WP_040133035.1\|2921020_2921242_-	hypothetical protein	NA	NA	NA	NA
WP_040133036.1\|2921313_2921589_+	MafI family immunity protein	NA	NA	NA	NA
WP_014658143.1\|2921834_2922224_+	VOC family protein	NA	NA	NA	NA
WP_004918840.1\|2923020_2923254_-	hypothetical protein	NA	NA	NA	NA
WP_014658144.1\|2923283_2923478_-	hypothetical protein	NA	NA	NA	NA
WP_040133037.1\|2924280_2924937_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

3498714 : 3507911

Cafeteria_roenbergensis_virus(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004920153.1\|3498714_3500748_+	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	8.2e-100	33.7
WP_004920157.1\|3500995_3501520_-	superoxide dismutase	Q9MC02	Salmonella_phage	1.2e-42	50.6
WP_040133195.1\|3501875_3504470_-	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.2e-90	34.9
WP_004920169.1\|3504760_3505009_+	DUF2498 family protein	NA	NA	NA	NA
WP_004924658.1\|3505224_3506394_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	1.3e-190	86.6
WP_004924660.1\|3506450_3506876_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	5.2e-25	50.4
WP_052038367.1\|3506903_3507911_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.9e-21	33.1

DBSCAN-SWA_6

3848457 : 3859704

Haemophilus_phage(40.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040133267.1\|3848457_3849075_-\|tail	tail assembly protein	K7PMH7	Enterobacteria_phage	1.8e-34	42.5
WP_040133268.1\|3849074_3850721_-	histidine kinase	K7P7Q7	Enterobacteria_phage	2.3e-36	51.7
WP_040133269.1\|3850707_3851364_-	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	1.3e-35	43.3
WP_040133270.1\|3851356_3852481_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	2.9e-78	41.1
WP_040133271.1\|3852464_3852827_-	hypothetical protein	A0A2H5BFY4	Vibrio_phage	1.9e-12	38.3
WP_004920997.1\|3852826_3853483_-	hypothetical protein	Q7Y5S7	Haemophilus_phage	2.1e-33	50.7
WP_040133272.1\|3853479_3854304_-	hypothetical protein	Q7Y5S8	Haemophilus_phage	8.5e-72	48.4
WP_014656229.1\|3854278_3854617_-	hypothetical protein	NA	NA	NA	NA
WP_040133273.1\|3854613_3855345_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	5.7e-27	34.0
WP_040133274.1\|3855427_3857212_-	hypothetical protein	D0UII2	Aggregatibacter_phage	2.4e-10	32.6
WP_014656233.1\|3857356_3857749_-	hypothetical protein	NA	NA	NA	NA
WP_004921015.1\|3857748_3858183_-	DUF3277 family protein	NA	NA	NA	NA
WP_040133275.1\|3858192_3859704_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	5.7e-98	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008920

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection