CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007207	Flavobacterium psychrophilum FPG3 chromosome, complete genome	8 crisprs	DEDDh,cas3,PD-DExK,RT	3	0	4	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007207_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_1

10967-11084

Orphan

Consensus_repeat	Method
CTTTGTGTTCTTTGTGGTTAAAATACAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007207_1

>merge|NZ_CP007207|1|10967-11084|CRISPRCasFinder
CTTTGTGTTCTTTGTGGTTAAAATACAATCGATATAAGTGACAATAGTTTTCAATGAACTCACAAAACTTTGTGTTCATCGTGCATTTCTTTGTGTTCTTTGTGGTTAAAATAGAATC

>NZ_CP007207|1|1|10967-11084|CRISPRCasFinder
CTTTGTGTTCTTTGTGGTTAAAATACAATC	GATATAAGTGACAATAGTTTTCAATGAACTCACAAAACTTTGTGTTCATCGTGCATTT
CTTTGTGTTCTTTGTGGTTAAAATAGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_034097085.1\|4884_6972_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP007207.1\|WP_034097105.1\|22155_22707_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP007207.1\|WP_034097087.1\|7967_8222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_011962188.1\|19034_21308_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|350795
NZ_CP007207.1\|WP_011964581.1\|7284_7614_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP007207.1\|WP_034097076.1\|553_2728_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP007207.1\|WP_011962191.1\|23308_23692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_034097099.1\|18294_18858_+\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NZ_CP007207.1\|WP_011964584.1\|8243_9227_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259805
NZ_CP007207.1\|WP_034097092.1\|11188_14521_+\|glutamyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|224117
NZ_CP007207.1\|WP_038465749.1\|15146_17018_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP007207.1\|WP_034097088.1\|9388_10894_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP007207.1\|WP_034097107.1\|22762_23272_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP007207.1\|WP_034097079.1\|2736_3408_+\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NZ_CP007207.1\|WP_034097094.1\|14513_14936_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|272871
NZ_CP007207.1\|WP_011964582.1\|7613_7964_+\|competence-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_034097083.1\|4421_4781_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP007207.1\|WP_034097097.1\|17181_18030_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|372616
NZ_CP007207.1\|WP_011962192.1\|23821_24970_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NZ_CP007207.1\|WP_011964578.1\|3516_4200_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_034097085.1\|4884_6972_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP007207.1\|WP_034097105.1\|22155_22707_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	3.57189e-11
NZ_CP007207.1\|WP_034097107.1\|22762_23272_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.11946e-12
NZ_CP007207.1\|WP_011962188.1\|19034_21308_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.0336e-49
NZ_CP007207.1\|WP_011964581.1\|7284_7614_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	6.93277e-12
NZ_CP007207.1\|WP_034097076.1\|553_2728_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP007207.1\|WP_034097099.1\|18294_18858_+\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	2.16289e-20
NZ_CP007207.1\|WP_011964584.1\|8243_9227_-\|SPFH-domain-containing-protein	gnl\|CDD\|259805	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	1.85492e-129
NZ_CP007207.1\|WP_034097092.1\|11188_14521_+\|glutamyl-tRNA-synthetase	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	3.65056e-14
NZ_CP007207.1\|WP_038465749.1\|15146_17018_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP007207.1\|WP_034097088.1\|9388_10894_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP007207.1\|WP_034097079.1\|2736_3408_+\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	2.62225e-42
NZ_CP007207.1\|WP_034097094.1\|14513_14936_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|272871	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY. This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other].	1.04397e-29
NZ_CP007207.1\|WP_034097083.1\|4421_4781_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.02105e-33
NZ_CP007207.1\|WP_034097097.1\|17181_18030_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.7883e-27
NZ_CP007207.1\|WP_011962192.1\|23821_24970_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	9.98537e-54
NZ_CP007207.1\|WP_011964578.1\|3516_4200_+\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	2.11667e-13

>NZ_CP007207.1|WP_034097088.1|9388_10894_-|glutamate--tRNA-ligase
MSKQVRVRFAPSPTGALHIGGVRTALFNYLFAKKHNGVFYLRIEDTDQNRFVPGAEEYILEALKWLGISPDETIGKNEKFGPYRQSERKHLYKQYADLLINSGWAYYAFDTSESLDTLRKITEAAGNTFIYNHTVRETLDNSLTNSPEKVAERIANGEDYVIRFKTPVNETLHLKDIIRGDIKFETNLLDDKVLFKSDGMPTYHLANIVDDHLMETSHVIRGEEWLPSMPLHVLLYRAFGWEAPEFAHLPLILKPVGNGKLSKRDGEKLGFPVFPLQWKTNEGTSLGYKENGFFPETVINFLAMLGWNDGTQQEIFSLEELVQKFDLNRIHKAGAKFDPEKNKWFNHQYLVKKEDSTLAELFLPILASKGIVTNLDYTTKVVALVKERAHFVNELWDLSDYFFIAPTSYDEKATKNWKEETPELMKQLIVVLNGIEDFTSLNIETIVKDWMTQNEIGMGKVMQPFRLSLVGKMMGPHLFDIIEMIGKKETINRIEKAIATL
>NZ_CP007207.1|WP_011964584.1|8243_9227_-|SPFH-domain-containing-protein
MSTIFIITIVIGLFILLSSFFTVKQQTAVVIERFGKFTGIRQSGLQLKLPVIDNIAGRVNLKIQQLDVMIETQTKDNVFIKMKVSVQFKVIPEHVYEAFYKLEYPHDQITAYVFDVVRAEVPKLILDDVFVRKDDVAIAVKRELNEAMTTYGYDIINTLVTDIDPDIQVKNAMNRINAAEREKTAAMFESEAQRIRIVAKAKAEAESKKLQGQGIADQRREIARGLVESVAVLNEVGINSQEASALIVITQHYDTLQAIGADTNSNLILLPNSPQAASDMLNTMVTSFAATNIIGEQMKKQTPRVKSKNHTSTDYNPSDTSEANETK
>NZ_CP007207.1|WP_034097087.1|7967_8222_+|hypothetical-protein
MEKKKYSSYTEIERDLEILKLEKEIYYEKILLSIDKTKESILPSKSVTLIGNVYQKVFSGTYVSILKMFIPYVYNWYLKRKRGN
>NZ_CP007207.1|WP_011964582.1|7613_7964_+|competence-protein
MAFEDLKENAEAIQENSKAYLESSMAYYKLWGFKVAMKSTTLLLKFFLIAICLSVVLLFVSIAAAFTLGNLLDSYSLGFLCIAGIYLLLAILLFLVKDKIVEGTILEKFSEIFFND
>NZ_CP007207.1|WP_011964581.1|7284_7614_+|YtxH-domain-containing-protein
MSNKNGNNVLALLLGAAIGVGAGILFAPNKGSKTREKIKGNLNDWKIDLNNKLADYEEDIREKFSGSKEDLKQSVDNLLSNSSYKAEETILFLEEKLAELKKQNAKLQK
>NZ_CP007207.1|WP_034097085.1|4884_6972_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MSTEEKSLNFIEQIIEDSLASGFPQDKLRFRFPPEPNGYLHIGHAKSICLNFGLGLRYNAPVNLRFDDTNPAKEEQEYVDAIKEDLQWLGFNWAEERYASDYFQQLYDWAVVMIKNGKAYIDSQSSSAMAIQKGTPTQPGVDGPFRNRSVAENLTLFEGMKNGDFEEGTHVLRAKIDMSSKNMLMRDPLMYRVLHRHHHRTGNDWKIYPMYDFAHGQSDYIEQISHSICTLEFVMHRELYNWFLDQIYDTTKVRPNQYEFARLNLNYTVMSKRKLLQLVQDKVVNGWDDPRMPTISGLRRRGYTAKSIRNFCETIGVAKRENVIDVSLLDFCLREDLNKTAPRVMAVLDPVKLVITNYPEGKEEWLEAENNQEDESAGFRKVPFSRELYIEREDFLEVAPAKFFRLSIGNEVRLKNGYIIKAESVTKDLEGNITQIEASYDTDSLSGSGTEASKRKVAGTLHWVSVSHAIEAEVRLYDRLFIDEAPDAHKEKNFLDFMNKTSLEIVNGFVEPSLINVKVNDKFQFQRLGYFTVDKESSTSKLVFNKTVGLKDAWEEKGKKEENLLMNMLKEINKYVKEKDENTAKNTLIPIIENIKSIDNYSLVINTIVKNIKNDNNALLFANLVLKHSDKVATKDIETEQITKLYTMSLKSQLVAVRILAIQNLKNDSENFSNFQTQLAELKNSEKNSNVLELL
>NZ_CP007207.1|WP_034097083.1|4421_4781_-|dihydroneopterin-aldolase
MGIIKLKNIRTFSYHGCLVEESKIGSNYKVDLEIKTDLRKSSLSDNLCDTVDYVLLNQIVVEEMAVRSQLLEHVAYRIIKRIFAESASVSRIIVAVSKLNPPISGDVEAVTIEIEEYRN
>NZ_CP007207.1|WP_011964578.1|3516_4200_+|LysE-family-transporter
MIQYILGNGIPLGIFLSFMIGPVFFVLLEISITKGFRAALIFDLGVILADIFFISIAYLGSYRLIQSLKDDPALFILGGIIMVTYGLISFFRLRKAHKAADEEEVVELIKKDYLNLFIKGFLLNFINIGVLGFWLLIIITFVPKLQSEVPNVIWFFTTVILTYIVTDICKILLSKQLRNKLTTENIIKVKKISSILLIIFGAFLLSQGWFPSDKTFVTNTIEKIEKK
>NZ_CP007207.1|WP_034097079.1|2736_3408_+|DUF2807-domain-containing-protein
MKKLFIIPFLVVTNLITAQVTKNVGNFIKVTAFDKISVQLIQSTENKIELKGKFENEAILINNNGELKIRLPLGNFLNGDDLVAKVYFTKLEGLEANEGSYVSCDTEIKALDFSLIAKEGSQIKAIVNAQRISIKSSNGSIIKLSGNAQNLDAVTNSGGKLEAEKCLTSQAKISVNAGGFADIYATDLVDAKTRAGGTITIYGNPKQINQKTILGGHIIISKR
>NZ_CP007207.1|WP_034097076.1|553_2728_+|ribonuclease-R
MSKMPKKFGKKEKDFSTKILKVLSQNANKPFNYKQISALLEVDDTKSRNEIIKDLKILASQKKIVETEPGKYLVKGISQDYYEGKIDMTSRKTAYFVCPDFGEDVFIPTNNLNHALDKDIVKVYVYNRRKGKRPEGEVIEVVERAKTDFVGVIDIQKNFAFVSTANPKMYTDIFIPLAKIAEAQQGDVVLVHIEDWPKKADSPFGAVTKVLGKPGEHNTEIHAILAEYGLPSEFPVEVEIFAQKIDTSIQESEIAKRRDMRQTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVSHYLQEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAIFEIDEKATVINQWFGRTVIDSNQRFAYEEAQYIIETKDNTIPVETSITGSSYIVSDEIVAATLKLDELAKIMRRKRMNDGAISFDKVEVKFNLSQDGEPEGVFFKVSKDANHLIEEFMLLANRKVAEYIGKQKKTFIYRIHDEPNEDKLFAMQAVIAKFGYKIDFRGGEISKSLNALMAEVNGTKEQNLIDTLAIRTMSKAKYSTENIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGGKSVDQETYETKCQHTSNMESLATNAERDSIKYMQVKYMQNHQDQEFLGVISGVTEWGIYVEIIENKCEGMVRIRDIKDDYYTFDEKQYALVGEISKSLLQLGDQVWVKVKNADLVKKQLDFNFLRKQ
>NZ_CP007207.1|WP_034097092.1|11188_14521_+|glutamyl-tRNA-synthetase
MDSKKLIFQKLEDFIKKFYTNELLRGTIFFVGLGLLYLFATSFIEYFLWLKPRGRTFLFILFVLVELFLLVRFIAFPIFQLFKLKKGIDYTDASKIIGNHFAQVNDKLTNFLQLTEDKNKSELLLASIHQKANALQPIPFSNAIDFNKNKKFLPLALIPLFFVLFLMLSGQQKLITESMNRVVNYKQQFLPPAPFSFTLVNKKLQTEQNKDFILKVKTVGKVVPEKAMIFIGDESYFMENTKQGEFEFVVTKPMQNIDFHIEANQVSSADYTLNVITVPAIANFEMLLNFPNYLNKKSEIIKGTGNAIVPEGTQITWRINTVATQNINLIEANKSYLFVNVGNTFNLSKNIFQNTEYQIFTSNKVVKNYEKLNYAINVVKDQFPTIKVEMAADSLKGSKEYILGQISDDYGFSKLSVVYFPKDNPKASKRGTIAVKQNNFDQFVFSFPSTLPIVDGVAYEYYFEVSDNDAIHHYKSTKSSEFSYREATAQEKENENLQQQNENINALEKSLSKQDKQLSELQKLQKTNKEKNDLDYKDKQKLDDFIKRQKQQDEMMKEFSEKIKDNLEKFKAEDNDPKKKILQERLEKSKEELEKNQKLLDELKRLNEKLDQDEIQEKLEKFEQKSKNQTKTLAQLVELTKRYYVEKKAEQLADKLDKLSEKEDKLADDKKENSEEKQNEVNKEFDKIEKELKDLDKENKELKSPLAIPHDKEKEESISKDLQKASEELQKKQQDKASAKQKNAAKKMKEMSQKMTQEMEGGEKEQLEEDVAMLRQVLDNLLAFSFSQEALIKNFKAITNTSNAFSKHLKTQQDLKQQFKHVDDSLFAMSLRQPKISEQITTEIGKVYYNIDKSIDLLSDNQIPRGTSSQQFSLTSANNLANYLSDVLNSMQMSLSGMGKGKPKQGKGKGQGSGMQLPDIIQKQQDLGEKMKGGKSKKPGDKPGEGKAGKLGKDGKTGKGSNGNSNGENGDDGEGEAKSVLEILKQQQQLREALQKELEKNGLGGMGQNALEQMKQVEKQLINKGFSNDAIQKALSLKYELLKLEKAIQEQNQDSKRQSIANKRGFNNTTNPLPQKLQEYLNSIEILNRQTLPLRSNFNRKVQEYFKKND
>NZ_CP007207.1|WP_034097094.1|14513_14936_+|rRNA-maturation-RNase-YbeY
MISFNYEIDFEIQEETSYINWVSSVILSENKSEGEINYIFCDDNYLLEINQQYLNHDTLTDVISFDYSLGDEIHGDIYISIERVRENADDFKVPFEEELKRVMIHGVLHYCGYKDKSDADELLMRSKEDEKLKLFHVKQN
>NZ_CP007207.1|WP_038465749.1|15146_17018_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MFLEEYDVIVVGAGHAGCEAAAASANLGCSTLLVTMSLQNIAQMSCNPAMGGIAKGQIVREIDALGGYSGIVSDNTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLEGTPNLDFYQEMVSGMVIENNKVLGIKTSLGLTIRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGESAAYGITEDLVKAGFESGRMKTGTPPRVDGRSLDYSKMNVEAGDINPSKFSYSDVTKPLLHQRDCHMTYTSLLVHDILREGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEGWNTCEVYVNGFSTSLPEDIQFKALRSVVGFEKVKFFRAGYAIEYDYFPPTQLKHTLETKLISGLYFAGQINGTTGYEEAASQGLMAGINAALKVKEKEPLILKRDEAYIGVLIDDLITKGTEEPYRMFTSRAEFRTLLRQDNADFRLTPMSNKIGLASDARLRRMEHKLNESEKMVAFFKETSITPTEANPVLIAKKTAEVNQTDKIFKILSRPQIDLSDVLKFENVANYVANNNVDQEILEQAEIQVKYSGYIDKERANAEKLTRLEDLKIPEKFDYHQIKSMSIEAKQKLSKIRPVTISQASRISGVSPSDISVLLVFLGR
>NZ_CP007207.1|WP_034097097.1|17181_18030_+|class-I-SAM-dependent-methyltransferase
MNFQTHSVFIKVKDNSISKESFELLIDEELQLLKTHPQPLLDILPKYYESEDYISHTDGKRSLFEKMYQIVKSYSLNKKVSLINTLHLQKGSLLDIGAGTGDFLATAKKQGWQITGIEPNEKAKIISISKGVSFAENLESISSHSFDVITMWHVLEHVPDLENQIKLLKRLLKPNGTIIIAVPNYKSFDAKYYGEFWAAYDVPRHLWHFSKTAIEKLFANENMKLIKMLPMIFDSFYVSLLSEKYKNGKMNFIKAFYIGLKSNMKAKRNLEYSSHIYVIKNS
>NZ_CP007207.1|WP_034097099.1|18294_18858_+|OmpH-family-outer-membrane-protein
MKKVVLLAAIVFSIISCDKKTEAKEYKTAYVDTQKMMEDYTELKELQDKYKTKGEVMGRELEVAAKRLKAEEAGFQQNAQIKGQAWAQQKAAEFQQREQQLQYAQQAMMQQLQGESGGKMDTIVKSMKQIIKDYGKEKGYDYIYGTGAEATVLYAKDSYDITKEVVKLLNDKYAAKPKTEEKAADKK
>NZ_CP007207.1|WP_011962188.1|19034_21308_+|helix-turn-helix-domain-containing-protein
MENISAEANYTLQFINQTQRNIFLTGKAGTGKTTLLREIIQTTHKNCVVVAPTGIAALNAGGVTIHSMFQLPFGGFIPDNTVPQFSEYIKFESKATLNRNFRMSGLKKSVIKNMELLIIDEVSMLRADLLDGIDFMLQSIRKKKIAFGGVQVLFIGDLLQLPPVIKDEEWKTLRNYYKGKFFFHSHVIQQNPPLYIELSKIFRQTDEIFISILNNLRNNRISPQDIENLNQYVKPNFDLKANKGYITLTTHNAKADGMNAKALDDLEGKQYQYKPEITGDFPEKIYPIDQHLQLKIGAQVMFVKNDLSLEKRYFNGKMGIIKSLSEAEILVHFPDEDVTIEVEKYEWQNIRYSVNNLTKEIEEETLGTFVHYPIKLAWAITVHKSQGLTFDKAALDVSQVFQPGQAYVALSRLRSLEGLVLLSPLQMNGISNDADVMDYAENKATQEKLEKSLQQETTKFLHNYLKSTFDWADLAQEWRNHLYSYSEKDESATKSKHSLWAKKQTDIVTKIQEPARKFLSQLDKLFSAEPFDIHFIKERIDAAYTYFFAQMDGIVYDILWKIEEVKRIKKAKMMFDELSVLEEVQIKAVFKLMKAKLLVKTIASGDIISKENLTSNDIKSYKTNKIDAIHEEFKRLNITLIDDNLDVERYAKKKKEVKEVKKSTVQETYELWQQKNTIKEIAALRKLTPQTIGGHLAKLIESGTIAITDVLPADKISALAEAFFGYKEETLNPLKEKYGDEFTWDELKMYKSSLNAG
>NZ_CP007207.1|WP_034097105.1|22155_22707_-|DinB-family-protein
MKTQSETLIFNLIETTKQNINFVELLKQKNDAQLNWKQNPESWSVLECLEHLNLYGYFYIPEIEKTISKAKYKNETIFKSGVLGNHFAISMLPKQKLNKMKTFKDKNPLNSNLERKVIDEFINQQRKTIDLLNKSRSVNLNKEKVKISVTKWIKLNLGDTFRFTTNHNIRHLKQIENNINLQS
>NZ_CP007207.1|WP_034097107.1|22762_23272_-|Crp/Fnr-family-transcriptional-regulator
MTEIKDLSEKTLVLERNQYLKVKGSIDTNIYFVESGSLRIFVSDDYEEQIIRFGYENDLIASLDSFLTEKPSDFCIQAIKKTIVKIIPKQKIIALINLNEANKQTWTKLLENIVLQQIEREKDILTSSPKLRFQRVLKRSPKLFQEIPNKHIANYLRMSPETLSRLKKS
>NZ_CP007207.1|WP_011962191.1|23308_23692_-|hypothetical-protein
MENLASLFVLFFLAITFLQSGYDKYTDWNGNVSWLTQHFSGTIFANKIPLALKTLLAFEIIAGILCVVGMIEMSISGGTTFGKYGACLSCVTLLMLLFGQRIAKDYDGARTIVIYFIPAIMGVYWLS
>NZ_CP007207.1|WP_011962192.1|23821_24970_-|DNA-polymerase-III-subunit-delta'
MQFSQIVGHEHIKNHLIQSATAGRIPHAQLFVGPEGAGVLQTAIAYAQYVLCNNIGNENQGGNESCNLKFEHFSHPDLHFVYPTVTTDEVKTKPKSLDFITDWRKFLAQKPYGSIFDWYNILDVKNKQGEIRVEDAQEVLKSLSLKAYEGGYKIMIVWMADKMNIAASNKLLKLLEEPTEKTLFILITENEEDIIQTIRSRCQVLHFSALSENAITEALITNENIEAKKAQKIAHKSQGNYNKALQFCHEINEDLPFEEWFVTWVRAAFRAKGNAAAIQDLILWSEQIAGLGRETQKKFLHFCIEMFRQALLLNYQTQKLVYLETTVEKFSLEKFAPFVNGNNINDIFKEISDAIYHIERNGNAKIILTDLSIKLTRLIHKK

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Crispr_ID: NZ_CP007207_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_2

17080-17183

Orphan

Consensus_repeat	Method
TTAATCTATATTCAAAAATCAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007207_2

>merge|NZ_CP007207|2|17080-17183|CRISPRCasFinder
TTAATCTATATTCAAAAATCAAATTGTTCCACGTGAAACGTAAATAAATTTTTTAGTTTCAAAACTTAAATTAAAAATCGTTAATCTACATTCAAAAATCAAAT

>NZ_CP007207|2|2|17080-17183|CRISPRCasFinder
TTAATCTATATTCAAAAATCAAAT	TGTTCCACGTGAAACGTAAATAAATTTTTTAGTTTCAAAACTTAAATTAAAAATCG
TTAATCTACATTCAAAAATCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_034097109.1\|25398_25836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_034097085.1\|4884_6972_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP007207.1\|WP_034097087.1\|7967_8222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_011962188.1\|19034_21308_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|350795
NZ_CP007207.1\|WP_011964581.1\|7284_7614_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP007207.1\|WP_034097107.1\|22762_23272_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP007207.1\|WP_034097099.1\|18294_18858_+\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NZ_CP007207.1\|WP_038465758.1\|28730_32459_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	unknown	unknown	gnl\|CDD\|371704
NZ_CP007207.1\|WP_011964584.1\|8243_9227_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259805
NZ_CP007207.1\|WP_034097092.1\|11188_14521_+\|glutamyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|224117
NZ_CP007207.1\|WP_038465749.1\|15146_17018_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP007207.1\|WP_052079066.1\|27295_28729_+\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639
NZ_CP007207.1\|WP_011962194.1\|25870_27163_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_034097105.1\|22155_22707_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP007207.1\|WP_034097088.1\|9388_10894_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP007207.1\|WP_034097094.1\|14513_14936_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|272871
NZ_CP007207.1\|WP_011962191.1\|23308_23692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_034097083.1\|4421_4781_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP007207.1\|WP_011962192.1\|23821_24970_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NZ_CP007207.1\|WP_011964582.1\|7613_7964_+\|competence-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_034097085.1\|4884_6972_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP007207.1\|WP_011962188.1\|19034_21308_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.0336e-49
NZ_CP007207.1\|WP_011964581.1\|7284_7614_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	6.93277e-12
NZ_CP007207.1\|WP_034097107.1\|22762_23272_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.11946e-12
NZ_CP007207.1\|WP_034097099.1\|18294_18858_+\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	2.16289e-20
NZ_CP007207.1\|WP_038465758.1\|28730_32459_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	gnl\|CDD\|371704	pfam11751, PorP_SprF, Type IX secretion system membrane protein PorP/SprF. This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.	3.34449e-66
NZ_CP007207.1\|WP_011964584.1\|8243_9227_-\|SPFH-domain-containing-protein	gnl\|CDD\|259805	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	1.85492e-129
NZ_CP007207.1\|WP_034097092.1\|11188_14521_+\|glutamyl-tRNA-synthetase	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	3.65056e-14
NZ_CP007207.1\|WP_038465749.1\|15146_17018_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP007207.1\|WP_034097088.1\|9388_10894_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP007207.1\|WP_034097105.1\|22155_22707_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	3.57189e-11
NZ_CP007207.1\|WP_034097094.1\|14513_14936_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|272871	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY. This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other].	1.04397e-29
NZ_CP007207.1\|WP_034097083.1\|4421_4781_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.02105e-33
NZ_CP007207.1\|WP_011962192.1\|23821_24970_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	9.98537e-54
NZ_CP007207.1\|WP_052079066.1\|27295_28729_+\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	5.40773e-12

>NZ_CP007207.1|WP_038465749.1|15146_17018_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MFLEEYDVIVVGAGHAGCEAAAASANLGCSTLLVTMSLQNIAQMSCNPAMGGIAKGQIVREIDALGGYSGIVSDNTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLEGTPNLDFYQEMVSGMVIENNKVLGIKTSLGLTIRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGESAAYGITEDLVKAGFESGRMKTGTPPRVDGRSLDYSKMNVEAGDINPSKFSYSDVTKPLLHQRDCHMTYTSLLVHDILREGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEGWNTCEVYVNGFSTSLPEDIQFKALRSVVGFEKVKFFRAGYAIEYDYFPPTQLKHTLETKLISGLYFAGQINGTTGYEEAASQGLMAGINAALKVKEKEPLILKRDEAYIGVLIDDLITKGTEEPYRMFTSRAEFRTLLRQDNADFRLTPMSNKIGLASDARLRRMEHKLNESEKMVAFFKETSITPTEANPVLIAKKTAEVNQTDKIFKILSRPQIDLSDVLKFENVANYVANNNVDQEILEQAEIQVKYSGYIDKERANAEKLTRLEDLKIPEKFDYHQIKSMSIEAKQKLSKIRPVTISQASRISGVSPSDISVLLVFLGR
>NZ_CP007207.1|WP_034097094.1|14513_14936_+|rRNA-maturation-RNase-YbeY
MISFNYEIDFEIQEETSYINWVSSVILSENKSEGEINYIFCDDNYLLEINQQYLNHDTLTDVISFDYSLGDEIHGDIYISIERVRENADDFKVPFEEELKRVMIHGVLHYCGYKDKSDADELLMRSKEDEKLKLFHVKQN
>NZ_CP007207.1|WP_034097092.1|11188_14521_+|glutamyl-tRNA-synthetase
MDSKKLIFQKLEDFIKKFYTNELLRGTIFFVGLGLLYLFATSFIEYFLWLKPRGRTFLFILFVLVELFLLVRFIAFPIFQLFKLKKGIDYTDASKIIGNHFAQVNDKLTNFLQLTEDKNKSELLLASIHQKANALQPIPFSNAIDFNKNKKFLPLALIPLFFVLFLMLSGQQKLITESMNRVVNYKQQFLPPAPFSFTLVNKKLQTEQNKDFILKVKTVGKVVPEKAMIFIGDESYFMENTKQGEFEFVVTKPMQNIDFHIEANQVSSADYTLNVITVPAIANFEMLLNFPNYLNKKSEIIKGTGNAIVPEGTQITWRINTVATQNINLIEANKSYLFVNVGNTFNLSKNIFQNTEYQIFTSNKVVKNYEKLNYAINVVKDQFPTIKVEMAADSLKGSKEYILGQISDDYGFSKLSVVYFPKDNPKASKRGTIAVKQNNFDQFVFSFPSTLPIVDGVAYEYYFEVSDNDAIHHYKSTKSSEFSYREATAQEKENENLQQQNENINALEKSLSKQDKQLSELQKLQKTNKEKNDLDYKDKQKLDDFIKRQKQQDEMMKEFSEKIKDNLEKFKAEDNDPKKKILQERLEKSKEELEKNQKLLDELKRLNEKLDQDEIQEKLEKFEQKSKNQTKTLAQLVELTKRYYVEKKAEQLADKLDKLSEKEDKLADDKKENSEEKQNEVNKEFDKIEKELKDLDKENKELKSPLAIPHDKEKEESISKDLQKASEELQKKQQDKASAKQKNAAKKMKEMSQKMTQEMEGGEKEQLEEDVAMLRQVLDNLLAFSFSQEALIKNFKAITNTSNAFSKHLKTQQDLKQQFKHVDDSLFAMSLRQPKISEQITTEIGKVYYNIDKSIDLLSDNQIPRGTSSQQFSLTSANNLANYLSDVLNSMQMSLSGMGKGKPKQGKGKGQGSGMQLPDIIQKQQDLGEKMKGGKSKKPGDKPGEGKAGKLGKDGKTGKGSNGNSNGENGDDGEGEAKSVLEILKQQQQLREALQKELEKNGLGGMGQNALEQMKQVEKQLINKGFSNDAIQKALSLKYELLKLEKAIQEQNQDSKRQSIANKRGFNNTTNPLPQKLQEYLNSIEILNRQTLPLRSNFNRKVQEYFKKND
>NZ_CP007207.1|WP_034097088.1|9388_10894_-|glutamate--tRNA-ligase
MSKQVRVRFAPSPTGALHIGGVRTALFNYLFAKKHNGVFYLRIEDTDQNRFVPGAEEYILEALKWLGISPDETIGKNEKFGPYRQSERKHLYKQYADLLINSGWAYYAFDTSESLDTLRKITEAAGNTFIYNHTVRETLDNSLTNSPEKVAERIANGEDYVIRFKTPVNETLHLKDIIRGDIKFETNLLDDKVLFKSDGMPTYHLANIVDDHLMETSHVIRGEEWLPSMPLHVLLYRAFGWEAPEFAHLPLILKPVGNGKLSKRDGEKLGFPVFPLQWKTNEGTSLGYKENGFFPETVINFLAMLGWNDGTQQEIFSLEELVQKFDLNRIHKAGAKFDPEKNKWFNHQYLVKKEDSTLAELFLPILASKGIVTNLDYTTKVVALVKERAHFVNELWDLSDYFFIAPTSYDEKATKNWKEETPELMKQLIVVLNGIEDFTSLNIETIVKDWMTQNEIGMGKVMQPFRLSLVGKMMGPHLFDIIEMIGKKETINRIEKAIATL
>NZ_CP007207.1|WP_011964584.1|8243_9227_-|SPFH-domain-containing-protein
MSTIFIITIVIGLFILLSSFFTVKQQTAVVIERFGKFTGIRQSGLQLKLPVIDNIAGRVNLKIQQLDVMIETQTKDNVFIKMKVSVQFKVIPEHVYEAFYKLEYPHDQITAYVFDVVRAEVPKLILDDVFVRKDDVAIAVKRELNEAMTTYGYDIINTLVTDIDPDIQVKNAMNRINAAEREKTAAMFESEAQRIRIVAKAKAEAESKKLQGQGIADQRREIARGLVESVAVLNEVGINSQEASALIVITQHYDTLQAIGADTNSNLILLPNSPQAASDMLNTMVTSFAATNIIGEQMKKQTPRVKSKNHTSTDYNPSDTSEANETK
>NZ_CP007207.1|WP_034097087.1|7967_8222_+|hypothetical-protein
MEKKKYSSYTEIERDLEILKLEKEIYYEKILLSIDKTKESILPSKSVTLIGNVYQKVFSGTYVSILKMFIPYVYNWYLKRKRGN
>NZ_CP007207.1|WP_011964582.1|7613_7964_+|competence-protein
MAFEDLKENAEAIQENSKAYLESSMAYYKLWGFKVAMKSTTLLLKFFLIAICLSVVLLFVSIAAAFTLGNLLDSYSLGFLCIAGIYLLLAILLFLVKDKIVEGTILEKFSEIFFND
>NZ_CP007207.1|WP_011964581.1|7284_7614_+|YtxH-domain-containing-protein
MSNKNGNNVLALLLGAAIGVGAGILFAPNKGSKTREKIKGNLNDWKIDLNNKLADYEEDIREKFSGSKEDLKQSVDNLLSNSSYKAEETILFLEEKLAELKKQNAKLQK
>NZ_CP007207.1|WP_034097085.1|4884_6972_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MSTEEKSLNFIEQIIEDSLASGFPQDKLRFRFPPEPNGYLHIGHAKSICLNFGLGLRYNAPVNLRFDDTNPAKEEQEYVDAIKEDLQWLGFNWAEERYASDYFQQLYDWAVVMIKNGKAYIDSQSSSAMAIQKGTPTQPGVDGPFRNRSVAENLTLFEGMKNGDFEEGTHVLRAKIDMSSKNMLMRDPLMYRVLHRHHHRTGNDWKIYPMYDFAHGQSDYIEQISHSICTLEFVMHRELYNWFLDQIYDTTKVRPNQYEFARLNLNYTVMSKRKLLQLVQDKVVNGWDDPRMPTISGLRRRGYTAKSIRNFCETIGVAKRENVIDVSLLDFCLREDLNKTAPRVMAVLDPVKLVITNYPEGKEEWLEAENNQEDESAGFRKVPFSRELYIEREDFLEVAPAKFFRLSIGNEVRLKNGYIIKAESVTKDLEGNITQIEASYDTDSLSGSGTEASKRKVAGTLHWVSVSHAIEAEVRLYDRLFIDEAPDAHKEKNFLDFMNKTSLEIVNGFVEPSLINVKVNDKFQFQRLGYFTVDKESSTSKLVFNKTVGLKDAWEEKGKKEENLLMNMLKEINKYVKEKDENTAKNTLIPIIENIKSIDNYSLVINTIVKNIKNDNNALLFANLVLKHSDKVATKDIETEQITKLYTMSLKSQLVAVRILAIQNLKNDSENFSNFQTQLAELKNSEKNSNVLELL
>NZ_CP007207.1|WP_034097083.1|4421_4781_-|dihydroneopterin-aldolase
MGIIKLKNIRTFSYHGCLVEESKIGSNYKVDLEIKTDLRKSSLSDNLCDTVDYVLLNQIVVEEMAVRSQLLEHVAYRIIKRIFAESASVSRIIVAVSKLNPPISGDVEAVTIEIEEYRN
>NZ_CP007207.1|WP_034097099.1|18294_18858_+|OmpH-family-outer-membrane-protein
MKKVVLLAAIVFSIISCDKKTEAKEYKTAYVDTQKMMEDYTELKELQDKYKTKGEVMGRELEVAAKRLKAEEAGFQQNAQIKGQAWAQQKAAEFQQREQQLQYAQQAMMQQLQGESGGKMDTIVKSMKQIIKDYGKEKGYDYIYGTGAEATVLYAKDSYDITKEVVKLLNDKYAAKPKTEEKAADKK
>NZ_CP007207.1|WP_011962188.1|19034_21308_+|helix-turn-helix-domain-containing-protein
MENISAEANYTLQFINQTQRNIFLTGKAGTGKTTLLREIIQTTHKNCVVVAPTGIAALNAGGVTIHSMFQLPFGGFIPDNTVPQFSEYIKFESKATLNRNFRMSGLKKSVIKNMELLIIDEVSMLRADLLDGIDFMLQSIRKKKIAFGGVQVLFIGDLLQLPPVIKDEEWKTLRNYYKGKFFFHSHVIQQNPPLYIELSKIFRQTDEIFISILNNLRNNRISPQDIENLNQYVKPNFDLKANKGYITLTTHNAKADGMNAKALDDLEGKQYQYKPEITGDFPEKIYPIDQHLQLKIGAQVMFVKNDLSLEKRYFNGKMGIIKSLSEAEILVHFPDEDVTIEVEKYEWQNIRYSVNNLTKEIEEETLGTFVHYPIKLAWAITVHKSQGLTFDKAALDVSQVFQPGQAYVALSRLRSLEGLVLLSPLQMNGISNDADVMDYAENKATQEKLEKSLQQETTKFLHNYLKSTFDWADLAQEWRNHLYSYSEKDESATKSKHSLWAKKQTDIVTKIQEPARKFLSQLDKLFSAEPFDIHFIKERIDAAYTYFFAQMDGIVYDILWKIEEVKRIKKAKMMFDELSVLEEVQIKAVFKLMKAKLLVKTIASGDIISKENLTSNDIKSYKTNKIDAIHEEFKRLNITLIDDNLDVERYAKKKKEVKEVKKSTVQETYELWQQKNTIKEIAALRKLTPQTIGGHLAKLIESGTIAITDVLPADKISALAEAFFGYKEETLNPLKEKYGDEFTWDELKMYKSSLNAG
>NZ_CP007207.1|WP_034097105.1|22155_22707_-|DinB-family-protein
MKTQSETLIFNLIETTKQNINFVELLKQKNDAQLNWKQNPESWSVLECLEHLNLYGYFYIPEIEKTISKAKYKNETIFKSGVLGNHFAISMLPKQKLNKMKTFKDKNPLNSNLERKVIDEFINQQRKTIDLLNKSRSVNLNKEKVKISVTKWIKLNLGDTFRFTTNHNIRHLKQIENNINLQS
>NZ_CP007207.1|WP_034097107.1|22762_23272_-|Crp/Fnr-family-transcriptional-regulator
MTEIKDLSEKTLVLERNQYLKVKGSIDTNIYFVESGSLRIFVSDDYEEQIIRFGYENDLIASLDSFLTEKPSDFCIQAIKKTIVKIIPKQKIIALINLNEANKQTWTKLLENIVLQQIEREKDILTSSPKLRFQRVLKRSPKLFQEIPNKHIANYLRMSPETLSRLKKS
>NZ_CP007207.1|WP_011962191.1|23308_23692_-|hypothetical-protein
MENLASLFVLFFLAITFLQSGYDKYTDWNGNVSWLTQHFSGTIFANKIPLALKTLLAFEIIAGILCVVGMIEMSISGGTTFGKYGACLSCVTLLMLLFGQRIAKDYDGARTIVIYFIPAIMGVYWLS
>NZ_CP007207.1|WP_011962192.1|23821_24970_-|DNA-polymerase-III-subunit-delta'
MQFSQIVGHEHIKNHLIQSATAGRIPHAQLFVGPEGAGVLQTAIAYAQYVLCNNIGNENQGGNESCNLKFEHFSHPDLHFVYPTVTTDEVKTKPKSLDFITDWRKFLAQKPYGSIFDWYNILDVKNKQGEIRVEDAQEVLKSLSLKAYEGGYKIMIVWMADKMNIAASNKLLKLLEEPTEKTLFILITENEEDIIQTIRSRCQVLHFSALSENAITEALITNENIEAKKAQKIAHKSQGNYNKALQFCHEINEDLPFEEWFVTWVRAAFRAKGNAAAIQDLILWSEQIAGLGRETQKKFLHFCIEMFRQALLLNYQTQKLVYLETTVEKFSLEKFAPFVNGNNINDIFKEISDAIYHIERNGNAKIILTDLSIKLTRLIHKK
>NZ_CP007207.1|WP_034097109.1|25398_25836_+|hypothetical-protein
MKKIVLFSLFILFTVSDANAQKTNKPLGIISSGASLKKFYEKTELDGMNKGLLLELYIERIKVLVNTLPYIALTTKPGVTMQDVGVPASSENDKTLSLQKQNTETFLNSTVDFQRAMTPYADKGNLVSSILYYEAMLKALEQINE
>NZ_CP007207.1|WP_011962194.1|25870_27163_+|hypothetical-protein
MKNLLQIKWMLLFVVFTASAQQEKGIIGASNWLSNWTEFKPANATYNETNQILYGKITANTTLFKKNTYLLQGPVYVTNNAILTIEPGTVIKGDYETNGALIITKGSQIVANGLETDPIVFTSNRPQPKPGDWGGVAILGDAPMNKFGGASSLNFDLDPSQTIYGGTNPQSNSGIVRFLRIEFAGKKIKGFKDYNAFSLASVGSKTVIENVMCSFAAGNSFEILGGDVTVSKLVSLRSSSDDFKFTQGAQCKIDNSLAIRHSVYSSSTRSRCMNVTSYEKKEEADLSKNQTNVTAINCSLVNTTLNLSDDIAKGLVKEAIYVGNNASFSIKRSVVSGFYPAAILSSEIKLEASAFKKIKFEEIYFNNCKGNIFVENTTTNDDLEDYYGSGSYYNLYQNTDNKEMFLDIYNTKNNPDFRIKISKITASNSK
>NZ_CP007207.1|WP_052079066.1|27295_28729_+|gliding-motility-associated-C-terminal-domain-containing-protein
MKNKITTLINKCVFVFVLMAFFSTAKTFGQIGIPTYPFSQICASPSFNTFTLNFTFSTANTYVLEMSDANGSFATLTGITILSSQTSTSPGSFTFKVPTTTAGENYRFRVRGGTTTGPQSSPALAAYYKAFNADFTLNGGISPINICGSGIFQLLIDNGPASNDSPVDFPSLKYKWKKNGVFVPGETGSFLNINSSGDYQAFVDYGNCSTLDDGQIEKSVKVTVNIVAAGSTFTIASSSGNTICPPATSILSVTAGYSYQWSRDGVAISGAQANTYVASQAGSYTVIVNQGGCSSTSTPFVLSTEGFNSSIDVQQEPLANIISAGETKTITVTTDAVSPTFEWYLNGTLIPLATTNSYTTSDVGNYKVKIKQTSGCNTFKEFFFLLKEGINPKQVPNLISPNADGVNDTWVIPQDYVNANTEVLIIDPQGNVDFQTVNYQNNWPVKEIVFKSTNPVYYYIISKDGSPVKKGSITIIK
>NZ_CP007207.1|WP_038465758.1|28730_32459_+|PorP/SprF-family-type-IX-secretion-system-membrane-protein
MKKEFINLLLILGFILPNHAQTGGVVSFDVPAKNSLKFNKFLINPTFSFVREDESFVSMYNKRQFSGLENAPQAYFASYSGKFREDNAIGFGLFQRNYGVLTTFGIVGNFARNVELSNNSNFTFGLNLAYINSGLNTGKIVTGEAEPLLQTVPKNSLVTINPGLNYSTGFIDFGIAANNIFTYNFSGSDLVSDDPAKSFVGHVMYTGYLYNNSGLFENGKFSMIVKGEAAKEKTIFSTNLLLNAPKAGWVQAGYNSLYGISAGIGFTVAKKLSIGYTLEKGIGNLSNLGLSHEITLAYKLKGYGDFEDYKPIVKATKKTNPGTKNATVNKKTPADLQKERAEALALKTEKDKARAEAEKVRKAKELADAKEKAEVLAALRKAQADKLLALQGKDKAVLEAERQRKLKEAADSRANNANAARLKAEQDKANALAESQRLRNEKAAADAKAKTDAQRLRTEKAIADAKALADAKAQARTNAAKALADAANAKAEAERLRKEKADADAKALADAKAQARTNAAKALADAANAKAEAERLRKEKADADAKALADAKVQAKAEADKLKANQAEAERLRKEKAIAEAKALADAKVQAKSEADKLKSNQAEAERLRKEKADAEAKALADAKVQAKSEADKLKANQAEAERLRKEKADADAKALADAKAQAKAEADKLKANQAEAERLRKEKADADAKALADAKAQAKSEADKLKANQAEAERLRKEKADADAKALADAKAQAKSEADKLKANQAEAERLRKEKAIADAKALADAKAQAKSEADKLKANQAEAELLRKEKADADAKALADAKAQAKSEADKLKANQAEAERLRKEKADADAKALADAKAQAKAEADKLKANQAEAERLRKEKADADAKAQAKSEADKLKANQAEAERLRKEKADADAKAQAKAEADKLKANQAEAERLRKEKAEADAKALADETTERLRKEADAKAKIDEAKTTEDKELDNLSQVLEDSKKNQKQSLSRLDSITKAKDNELKELRRVNDLSDKGIVSEAKDFQNTSAANRALESLKSEIAESSKNQNNFIKEFETLTNERLKKVPNRNDIVNQSNLKSLEKLKLDKLNSDKQNADLLTKLETIKAETVIEKSRRIKRAQFDSDDAKYQKDRETLKEIKTSTAPTGQTYKPTDFDFGEEQAGTQIIKNNDNIPEGYYIVIAIHKDVAKRDAFVKKAIQAGQKDIDFFYNASNGNYYIYYDRQNQIQEATTAMESKGSKPYNGKMVIVKVEK

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Crispr_ID: NZ_CP007207_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_3

233394-233694

Unclear

Consensus_repeat	Method
CAATAGAAGTTACAGAATTAGGAAT	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP007207_3

>merge|NZ_CP007207|3|233394-233694|CRISPRCasFinder
CAATATCAGTCACCGAATTAGGAATGGTAACCGATGTCAAACTTGTACAAAAATAAAAGCAATGACTTCCAATAGTAGTCAAAGCATTAGGAAAGGTAACAGATGTTAAACCAAGGCATTCGCTAAAAGCTTTCTTTCCAATAACAGTCACAGAATTAGGAATTGTAATTGATATTAAACCTGTACAGAAGGAAAAAGTCCCTTCTTCAATAGAAGTTACAGAATTAGGAATGCTAATCGATATTAATCTCTCACAACTATAAAAAGCAAACTTTCCAATAGCAGTTACAGAATTAGGAAT

>NZ_CP007207|3|3|233394-233694|CRISPRCasFinder
CAATATCAGTCACCGAATTAGGAAT	GGTAACCGATGTCAAACTTGTACAAAAATAAAAGCAATGACTTC
CAATAGTAGTCAAAGCATTAGGAAA	GGTAACAGATGTTAAACCAAGGCATTCGCTAAAAGCTTTCTTTC
CAATAACAGTCACAGAATTAGGAAT	TGTAATTGATATTAAACCTGTACAGAAGGAAAAAGTCCCTTCTT
CAATAGAAGTTACAGAATTAGGAAT	GCTAATCGATATTAATCTCTCACAACTATAAAAAGCAAACTTTC
CAATAGCAGTTACAGAATTAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_038465870.1\|224719_225985_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_011962366.1\|241577_242894_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|214963
NZ_CP007207.1\|WP_011962358.1\|234522_235188_+\|DUF4271-domain-containing-protein	unknown	unknown	gnl\|CDD\|379465
NZ_CP007207.1\|WP_038465873.1\|225998_227195_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_034097335.1\|240710_241352_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP007207.1\|WP_052079070.1\|220389_221517_-\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_011962360.1\|236023_236794_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP007207.1\|WP_034097333.1\|239345_239978_-\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NZ_CP007207.1\|WP_011962364.1\|239977_240700_-\|geranylgeranylglyceryl/heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|235237
NZ_CP007207.1\|WP_074460277.1\|231946_232936_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_011962362.1\|237270_239385_-\|DUF4301-family-protein	unknown	unknown	gnl\|CDD\|372920
NZ_CP007207.1\|WP_011962361.1\|236866_237271_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP007207.1\|WP_038465867.1\|223780_224704_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_034097337.1\|243027_243636_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038465879.1\|228937_229927_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_038465876.1\|227208_228612_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_011962359.1\|235208_235958_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP007207.1\|WP_080731705.1\|221842_223246_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_052079071.1\|229941_230862_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP007207.1\|WP_038465882.1\|230876_231932_-\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275383

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_038465870.1\|224719_225985_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	7.9575e-47
NZ_CP007207.1\|WP_011962366.1\|241577_242894_+\|adenosylhomocysteinase	gnl\|CDD\|214963	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_CP007207.1\|WP_011962358.1\|234522_235188_+\|DUF4271-domain-containing-protein	gnl\|CDD\|379465	pfam14093, DUF4271, Domain of unknown function (DUF4271). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 221 and 326 amino acids in length.	3.66454e-24
NZ_CP007207.1\|WP_038465873.1\|225998_227195_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.52725e-43
NZ_CP007207.1\|WP_034097335.1\|240710_241352_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	5.02635e-11
NZ_CP007207.1\|WP_052079070.1\|220389_221517_-\|leucine-rich-repeat-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.15732e-40
NZ_CP007207.1\|WP_011962360.1\|236023_236794_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	2.03108e-37
NZ_CP007207.1\|WP_034097333.1\|239345_239978_-\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	9.66588e-51
NZ_CP007207.1\|WP_011962364.1\|239977_240700_-\|geranylgeranylglyceryl/heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|235237	PRK04169, PRK04169, heptaprenylglyceryl phosphate synthase.	3.89076e-83
NZ_CP007207.1\|WP_074460277.1\|231946_232936_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.31577e-37
NZ_CP007207.1\|WP_011962362.1\|237270_239385_-\|DUF4301-family-protein	gnl\|CDD\|372920	pfam14134, DUF4301, Domain of unknown function (DUF4301). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 505 and 516 amino acids in length.	0
NZ_CP007207.1\|WP_011962361.1\|236866_237271_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	4.25344e-40
NZ_CP007207.1\|WP_038465867.1\|223780_224704_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	6.82337e-33
NZ_CP007207.1\|WP_038465879.1\|228937_229927_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.02931e-37
NZ_CP007207.1\|WP_038465876.1\|227208_228612_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	7.53612e-44
NZ_CP007207.1\|WP_011962359.1\|235208_235958_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	2.92044e-33
NZ_CP007207.1\|WP_080731705.1\|221842_223246_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.13168e-46
NZ_CP007207.1\|WP_052079071.1\|229941_230862_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.9293e-32
NZ_CP007207.1\|WP_038465882.1\|230876_231932_-\|leucine-rich-repeat-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	9.49989e-37

>NZ_CP007207.1|WP_074460277.1|231946_232936_-|leucine-rich-repeat-domain-containing-protein
MRKLLFVILMPFLGIAQNFTANGINYTVTSSVAPFTVSVSDNTRFSGVAVIPETVAYNSENYAVTAITASAFKSCSGLTSVTIGNFITSIERDAFRDSTNLTTVTIGNSVNSIERFAFNNCSRLTSITIPDSVTAIRNSAFASCTGLTSVTFPNSVSFIDAFAFSRCTNLTSVTIPNSVTHIGGYAFNNCSSLTTVNCYITTPLAINVTTFRKVNKSTCALNVPAGTEAAYQAAAVWKDFSPISGSLLSNHSFAIESALKIYPNPVSEILNIALQEDLQLEKVNFYNTLGQLIKTTNHSGINVSSFAKGNYFVEIMTNQGKVTKTIIVQ
>NZ_CP007207.1|WP_038465882.1|230876_231932_-|leucine-rich-repeat-protein
MRKLLFIILMPFLGIAQDFTENGINYTITSSTAPFTASVASNTRFSGDAVIPETVVYNSENYAVTAIADEAFKGNYNLTSVSIGDAVTSVGESAFNNCVALTSVTIGNSVISIGNSAFIGSSLTSLTIGNSVASIGSLAFFGCFGLTSLTIPSSVTSIANQAFSMCSGLTSVTIPNFVTSIGDGAFSMCSGLISVTIPNAVTSIGDYTFMNCTSLTTVNSYATIPLVINENAFHNLDKSICALNVPAGTEAAYQAAAVWKDFSPISGSLLSNHSFAIESNLKIYPNPVSEILNIALQENLQLQKVNFYNTLGQLIKTTNHSEINISSFAKGIYFVEVMTNQGKATKTIIVQ
>NZ_CP007207.1|WP_052079071.1|229941_230862_-|leucine-rich-repeat-domain-containing-protein
MKKLLFFILIPFLGIAQDFTANGINYTITSSVAPFTVSVDKNPGFTGVAEIPETVAYNSENYTVTSIRDYAFAYCNRLTSVTIPNSVTSIGEATFFQCTGLTSITIPNALTAIGKDVLYKCSSLTSITIPNSVISIEESAFDSCSGLTSVNIPNSVTDIRKHAFRKCTGLTTINCHITEPLIINSNVFKQVNQSNCALNVPAGTEAAYQAAAVWKDFSPISGSLLSNHSFAIESNLKIYPNPVSEILNIALQENLQLQKVNFYNTLGQLIKTTNHSEINISSFAKGIYFVEVMTNQGKATKTIIVQ
>NZ_CP007207.1|WP_038465879.1|228937_229927_-|leucine-rich-repeat-domain-containing-protein
MKKLLFFILIPFLGIAQDFTANGINYNVTSSVAPFTVSVAKNPGFTGVAEIPETVAYNSENYAVTDIVNYAFEDCIRLTSIRIGNAVTSIGVSALLNCTGLTSIRIGDAVTSIGDFAFNACTGLTSVTIPNSVTTIGIAAFGACAGLTSITIPNSVTTIKHNAFFNCAALKTVTIPNSVTSIGDYAFNLCPSLTTINCHTTTPLVINPNVFGDTNQSACTLNVPAGTEAVYQATEIWQDFSPITGGFLSSNSFAIKSNLKIYPNPVSEILNIALQEGLQLEKVNFYNTLGQLIKTTNHSEINISSFAKGNYFVEVMTNQGKATKTIIVQ
>NZ_CP007207.1|WP_038465876.1|227208_228612_-|leucine-rich-repeat-domain-containing-protein
MKKLLFFILIPFLGIAQDFTANGIKYTVTSSTAPFTVKVARNANFTGAAEIPETVAYNSENYAVTAIGESAFEHCNNLTSVTIPNSATSIGRYAFNMCSRLTSVTIPNRVTTIEIETFNNCIGLTSVTIPNSVTYIANSAFSGCAGLTSVIIPNSVTQIGHNSFSSCTGLTSVTIPDSVTAIGDRAFNKCSRLKSLTIGNSVTAIGIDAFNECSSLTSVIIPNSMTYIDKSAFRDCTSLTSITIPNSVTFIGDSAFYNCNSLTSVTIPNSVTFIGDHTFSNCSRLVSVTIPNTVTTIRGYAFSNCSRLTSVTIPNSVTTIENAAFYNCKRLTTVKCYITMPLAINADVFGNVTQSNCALTVPTGTQAVYQAAAVWRNFSPISANLLSNHSFAIESALKIYPNPVSEILNIVLQEGLQLEKVNFYNTLGQLIKTTNHSEINISSFAKGNYFVEVITNQGKATKTIIIQ
>NZ_CP007207.1|WP_038465873.1|225998_227195_-|leucine-rich-repeat-domain-containing-protein
MKKLLFFILIPFLGIAQTFTANRINYTVTSSTAPFTVKVTRNLNFTGAAEIPETVTYNSKNYIVTAIGENAFQECNTLTSVSIPNSVTTIGNGAFERCSSLISVTIPNSVTTIGNGAFADCSDLRSVTIPNSVTTIRGNAFADCSGLTSVTIPNSVTTIRENAFAACSGLTSVTIPNSVTTIGGGSFAECSGLTSVTISNSVTTIKNGAFFNCSGLTSVTIPNSVTTIENFAFERCSGLTSVTIPNSLTTIGDEAFAGCSSLRTVNCHITSPLVINANVFGNVTRSNCALNVPAGTEAAYQAAAVWRNFSPISGNLLSNHSFSIETNLKIYPNPVSEILNIALQEGLQLEKVNFYNTLGQLIKTTNHSEINVSSFAKGNYFVEVITNQGKATKTIIVQ
>NZ_CP007207.1|WP_038465870.1|224719_225985_-|leucine-rich-repeat-domain-containing-protein
MKKLLFFILIPFLGIAQDFTANGINYTITSRTAPFTISVTDNPNFTGAAEIPETVAYNGNRYIVTAITRGAFMHCNNLTSVTIPNSVTTIRENAFADCPDLTSVTIPNSVTSIGDRAFSGCTGLISVTIPNSVTDIENGAFAGCSGLTSVTIPNSVTTIRENAFADCSGLTSVTIPNSVTSIGDYVFGGCSGLTSVTIPNSATTIGDGAFQDCSGLTSVTIPNSVTTIGNFAFERCSGLTSVTIPNSATTIGDGSFQDCSDLTSVTIPNSVTTIGNGAFFNCSGLTSVNCYITMPLVINANVFGNVTQSNCALTVPTGTQAVYQAAAVWRNFSPISANLLSNHSFAIESALKIYPNPVSEILNIVLQEGLQLEKVNFYNTLGQLIKTTNHSEINVSSFAKGNYFVEVMTNQGKATKTIIIQ
>NZ_CP007207.1|WP_038465867.1|223780_224704_-|leucine-rich-repeat-domain-containing-protein
MRKLLFVILIPFLGIAQTFTANRIKYTVTSSTAPFTVKVARNANFTGAAEIPEIVTYNSKNYIVTAIGEDAFEYCNTLTSVTIPNSVTVIGKAAFYECGNLTAARIGNSVNSIKPLAFSNCHKLQSIIIPNSVTTIGDGSFARCSGLTSVTIPNSVTSIENSVFSNCDRLSTVNCYITTPLNIVGKHCFEDINTSKCALNVPAGTEVTYKAAAVWKDFSPISGSLLSNHSFAIESALKIYPNPASETLNIALQEGLQLEKVNFYNTLGQLIKTTNHSEINVSSFPKGNYFVEAITNQGKATKTIIVQ
>NZ_CP007207.1|WP_080731705.1|221842_223246_-|leucine-rich-repeat-domain-containing-protein
MAFQECNTLTSVSIPNSVTTIGNSAFERCSSLISVTIPNSVTTIGKDAFADCSGLTSVTIPNSVTTIGEGSFADCSGLTSVTIPNSVTSIGDYVFGGCSGLTSVTIPNSATTIGDGSFQDCSGLTSVTIPNSVTTIGNFAFERCSGLTSVTIPNSVTTIRDGSFAECSGLTSVTIPNSATTIGDGSFQDCSGLTSVTIPNSVTTIGKFAFERCSGLTSVTIPNSVTTIGDRSFAECSGLTSVTIPNSVTTIGNGAFERCSGLTSVTIPNSVTTIGNGAFFNCSGLTSVTIPNSVTNIEDEAFGECSGLTSVTIPNSVTNIGDEAFGGCSSLRTVNCHITSPLVIDENIFDDVTQSNCALNVPTGTQAVYQAAAVWRDFSPISGSLLSNHSFAIESALKIYPNPVSEILNIALQEGLQLEKVNFYNTLGQLIKTTNHSEINVSSFAKGNYFVEVMTSQGKATKTIIIQ
>NZ_CP007207.1|WP_052079070.1|220389_221517_-|leucine-rich-repeat-protein
MKKLLFFILIPFLGMAQTFTANDINYTITSSTAPFTIKVARNVNFTGAAEIPETVAYNSENYAVTDIVNYAFDGCKDLTSVTIPNSVTHIGDTAFRDCKNLTAVTIGNSINSIEFLTFKGCGNLQSIIIPNSVTSIGASAFRDCMKLKSITIPNSVTAFGSSAFDTCKSLTSVTIPNSVTAIEKYTFYNCNALTSVTIPNSVTAIGNSAFDGCMGLTSVTIPNSVTAIGEDAFAGCSSLRTVNCHITSPLVINENVFDAVSQSNCALNVPTGTQAVYQAAAVWKDFSPISGGFLSSNSFAIESNLKIYPNPVSEILNIALQEGLQLEKVNFYNTLGQLIKTTNHSEINVSSFAKGNYFVEVMTNQGKVTKSVIIQ
>NZ_CP007207.1|WP_011962358.1|234522_235188_+|DUF4271-domain-containing-protein
MRKTELIPRILENKDWVTVLFLLAFALLVVTKTAFENRFRDFVNLLINDKYLKIYKDSSNLMSWFTILLFVVQLISMSFFLQLVLSYFGYTTKTNWITFIQIFTFLSFFILSKFLIEKIIATSFDIENFIEQFNLFKVSYRTYIGLLLLPVDIIMYYTNIMNTYAIIGIMVILLMINAITYLVSLKNYQKLLLSKLFYFILYICALEIAPYYFMYYIITKS
>NZ_CP007207.1|WP_011962359.1|235208_235958_+|uroporphyrinogen-III-synthase
MKVKTILVSQPEPKVENSPYFELQNKHKVKIDFRPFIHVEGVLAKDVRTQKIDLNNFTAIILTSKNSVDHFFRVAEEMRYKVPEDLKYFCQSEAVAFYLQKYVVYRKRKIYVGQKDFVDMSTLFKKYKDEKYLLPSSDQLNADITQTLNNLKVDWIAGTFYKTVMSDLSDLKDVYYDVLAFFSPTGIKSLFKNFPNFEQKDTRIAVFGSTTQKEALEHGLRIDILAPTPETPSMTMALEKYVAEANKGK
>NZ_CP007207.1|WP_011962360.1|236023_236794_+|enoyl-CoA-hydratase/isomerase-family-protein
MNTLINPNGFIATIIDNKTATITFSHPASNSFPSNLLKDLTREFNALSQNESVSVIILKSEGNGAFCAGASFDELLSITNYNDGKLFFSGFANVINAMRTCQKIIIGRVQGKAVGGGVGLASACDYVFATNSASVKLSEIAIGIGPFVIEPAVSRKIGKTAMSQLTLAAHDWKTAQWAFENGLYSEIFTSAENLDSELMVFASKLASYNPEALQEMKKVFWEKTAHWDTLLYERAGISGQLVLSDFTKNALSAFKK
>NZ_CP007207.1|WP_011962361.1|236866_237271_-|aminoacyl-tRNA-hydrolase
MESEKIKTELTYKAVRSSGAGGQNVNKVSSKVVLSFDLQNSQALSEEEKELILVKLSSRLTSENILILNCDEDRSQLKNKAIVTKRFLELLKNALIVPKIRKATRIPKSVIRKRIKDKKNISEIKNNRKKPNFE
>NZ_CP007207.1|WP_011962362.1|237270_239385_-|DUF4301-family-protein
MEENLKQQQSNIIKITVFGPESTGKTTLTKQLAKHFDTVWIPEFARNYLQEKLDKTGNTCLAEDLLPIAIGQTKSENEALLKANKFLFCDTNLLVTKVYSEAYYGFCNPIINKAAAEHQYDLFFLTDIDLPFEKDDLRDSQENRDKFFTVFENSLIENNKPYIKISGNKKQRLEKAILIINDLIYAKKMGFSSHDFVQIHKHGIPLNNLEKQRELLTKGIPKITLQSPATLQNGIWKLSQNEYKEKAVFFDEIKSVLKLEKFIPASGAASRMFQFLNEFLNDFDVETDTINGYINKNKATSLTVFLTGMEKFPFFEAINKKLEATFPNIDTWTTDKKNYYFIKFLINSENFNFGNKPKGILPFHQYKNHIATPIEEHLNESTFYASSNGISNLHFTVSKEHQQQFEHILSIVKSKIELDNHTKINITFSYQNEKTDTLAVDFQNNPFRDENKKLVFRPGGHGSLIENLNTIDADLIFIKNIDNVIQNHIKTIALYKKALAGILIQLQNQIFAYLKTIDANLVSKKEIEEIIFFAEKKLNIVIPNHFNQLTYNDKIIYIKELFNKPIRVCGMVKNENEPGGGPFWVLDTNGEISLQIIEGSQIDLQDKKQMQIFQLATHFNPVDIVCSIKNYQGNKFNLLQFIDEKSGFIVEKNKNGTSYKAYELPGLWNGAMANWLTVFVEVPLITFNPVKTVNDLLKPTHQPK
>NZ_CP007207.1|WP_034097333.1|239345_239978_-|nicotinamide-mononucleotide-transporter
MLQMIESLFSQYKNYPTYEIVLELVAIFFGLSSVWCAKKNNIWVFPTGLISTFIYAYLLWQWDLLGDSMINGYYFIMSIYGWYHWTRKKEDAQEFPISVITNKEKIIGLIIFVLTLIFVIIVYIYFGKFTNWYSYIDTFLTAIFFVGMWLMAKRKIENWLFWILGDLISIPLYFAKGYTFTSFQYIIFTIIAVFGYLEWKKILNSNKVTS
>NZ_CP007207.1|WP_011962364.1|239977_240700_-|geranylgeranylglyceryl/heptaprenylglyceryl-phosphate-synthase
MSTIYNQILKAKAENKKLLAILLDPDKIDLENIQQLIEKINQSPATHIFVGGSLVENNILDQLLSEIKKICALPIVLFPGNPSQISDKADAILFLSLISGRNSDYLIEHQVNAVPILNKTNLEIISTGYILIESGSETAVALVSKTKPLPRNKPEYILQTAQAGEMLGKKLIYLEAGSGAKISVSKEIIALVSQNINIPLIVGGGIRDLSDIKKAHNTGADLVVIGTAFENNSNFFNQNL
>NZ_CP007207.1|WP_034097335.1|240710_241352_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MPLHKIITPNSSTKIYIWKIEETFEDLFDQVVLNDINLIRLNTMKSEMHQRGFLSVRKLLQEAGYADTDLHYNQEGKPHLKDNKFISISHSSQFSTIAISDKPIGIDIELAKEKVLKIASRFMNISHLEGLSVSEKIRKATVVWGIKESIFKIKNEKGISFPDHIFENPFLLSDKKATAQLSFNNTIASFDIFFEEINADNSLNYTLVYAFEN
>NZ_CP007207.1|WP_011962366.1|241577_242894_+|adenosylhomocysteinase
MSTATMPYVAFKVKDISLAAWGRKEIELAEAEMPGLMALRAEYKNEQPLAGARIAGCLHMTIQTAVLIETLIALGAEVTWSSCNIFSTQDQAAAAIAAAGIQVYAWKGLNEPDFDWCIEQTLFFGEDRKPLNMILDDGGDLTNMVIDRYPHLVEGIKGLSEETTTGVHRLYERVKAGTLPMPAINVNDSVTKSKFDNKYGCKESAVDAVRRATDIMLAGKRVVVCGYGDVGKGTAASFRGAGSIVTVTEIDPICALQAAMDGFEVKKLNTVVGNADIIITTTGNKDIVLGSHFEQMKDKTIVCNIGHFDNEIDMAWLNKNHGASKIEIKPQVDKYTIAGKDILILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWKNSAAYNNDVYMLPKHLDEKVAFLHLAKLGVELEVLRDDQAAYIGVGVDGPFKPEYYRY
>NZ_CP007207.1|WP_034097337.1|243027_243636_-|hypothetical-protein
MRYIFLLYLLMTILLTGCKDNNDNNTHERQIAKALKEKELVFSSINKTWNFVPLNLTPEAQAITNNWSDWRLFTSELYQKPKGTIGAFQRKTKSLVLKVETLNNTIPERISKPQIKSRLMAIITKVKALHTFINLDRIPEKKVVTLITDLNIELNAFQDQIEEIVRRSHIQKEEGEQEMLNLLNGSQPTNTTPITEEKNIED

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Crispr_ID: NZ_CP007207_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_4

1473012-1473133

Orphan

Consensus_repeat	Method
AATTTCAGCAGTTTTTTCTCTACACTTTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007207_4

>merge|NZ_CP007207|4|1473012-1473133|CRISPRCasFinder
AATTTCAGCAGTTTTTTCTCTACACTTTTTTGAGTTCAGTTCCGTAAAATTCTGAAGTTTCCATTTTCGGAAGTTCAGCAGTTTCAGATAAATTTCAGCAGTTTTTTCTCCACACTTTTTTG

>NZ_CP007207|4|4|1473012-1473133|CRISPRCasFinder
AATTTCAGCAGTTTTTTCTCTACACTTTTTTG	AGTTCAGTTCCGTAAAATTCTGAAGTTTCCATTTTCGGAAGTTCAGCAGTTTCAGATA
AATTTCAGCAGTTTTTTCTCCACACTTTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_038466458.1\|1478899_1480252_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_CP007207.1\|WP_106388619.1\|1485893_1486808_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP007207.1\|WP_038466434.1\|1463961_1464174_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NZ_CP007207.1\|WP_038466466.1\|1482441_1482924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466443.1\|1470899_1471880_-\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NZ_CP007207.1\|WP_038466425.1\|1461393_1461573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466428.1\|1461933_1462650_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP007207.1\|WP_038466452.1\|1475111_1476176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038467167.1\|1467775_1469305_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP007207.1\|WP_038467170.1\|1471876_1472725_-\|EcoRV-family-type-II-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370377
NZ_CP007207.1\|WP_038466455.1\|1476500_1476863_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038467163.1\|1466584_1467538_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377344
NZ_CP007207.1\|WP_038466461.1\|1480238_1480922_+\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP007207.1\|WP_038466449.1\|1473423_1475007_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP007207.1\|WP_016361990.1\|1481126_1482329_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP007207.1\|WP_034098120.1\|1469396_1470599_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP007207.1\|WP_052079098.1\|1484507_1485590_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466437.1\|1465074_1466277_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP007207.1\|WP_038466431.1\|1462646_1463897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466470.1\|1482935_1484120_-\|C10-family-peptidase	unknown	unknown	gnl\|CDD\|366737

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_038466458.1\|1478899_1480252_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.17928e-20
NZ_CP007207.1\|WP_106388619.1\|1485893_1486808_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.54123e-32
NZ_CP007207.1\|WP_038466434.1\|1463961_1464174_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	3.08284e-07
NZ_CP007207.1\|WP_038466443.1\|1470899_1471880_-\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	5.54538e-57
NZ_CP007207.1\|WP_038466428.1\|1461933_1462650_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	6.86838e-58
NZ_CP007207.1\|WP_038467167.1\|1467775_1469305_+\|IS1182-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.42271e-18
NZ_CP007207.1\|WP_038467170.1\|1471876_1472725_-\|EcoRV-family-type-II-restriction-endonuclease	gnl\|CDD\|370377	pfam09233, Endonuc-EcoRV, Restriction endonuclease EcoRV. Members of this family of prokaryotic restriction endonucleases recognize the double-stranded sequence 5'-GATATC-3' and cleave after T-3. They catalyze the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates.	1.5511e-138
NZ_CP007207.1\|WP_038467163.1\|1466584_1467538_-\|SIMPL-domain-containing-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	0.0049165
NZ_CP007207.1\|WP_038466461.1\|1480238_1480922_+\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	8.19638e-20
NZ_CP007207.1\|WP_038466449.1\|1473423_1475007_+\|IS1182-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	2.67609e-18
NZ_CP007207.1\|WP_016361990.1\|1481126_1482329_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.37866e-108
NZ_CP007207.1\|WP_034098120.1\|1469396_1470599_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.35963e-108
NZ_CP007207.1\|WP_038466437.1\|1465074_1466277_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.5248e-108
NZ_CP007207.1\|WP_038466470.1\|1482935_1484120_-\|C10-family-peptidase	gnl\|CDD\|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	1.27913e-40

>NZ_CP007207.1|WP_038467170.1|1471876_1472725_-|EcoRV-family-type-II-restriction-endonuclease
MSDIKKEFLEKLTEFSKELTNYVSDKVGDWKVKGFIDIEKSVYTISSDTKIISKILEIQLFPKFLEFADKNGYEIQLAEMQNWYPDLSFVNKVDPKIKFAVDIKTTYRLDDYTGFCNGFTLGSHGEYFRKRTSTKNIQFPYAEYTSHICLGILYTRALSTDIDETKILKLDELDKITSVIKDLVFFAEEKWKISSDKGGSGNTANIGSIQYIDDIIKGNGVFKNLGEKIFDEYWINQGVLKVPDTSKVGNYKKLTKLTEFLEFKGMNSDKINPVKPKRKNKK
>NZ_CP007207.1|WP_038466443.1|1470899_1471880_-|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MKIFVPPIKSQGIKTKLVEWISLNVKEIEFERWVEPFMGTGVVVFNVRPKKALLCDSNPHLINFYKALQNKEITSGIVKNFLIEEGSKLLETDGKHYYAVRERFNEFGNPLDFLFLSRSCFNGMMRFNKKGGFNVPFCKKPNRFAQALVTKITNQVENISQIIEQGDYEFRHQDFNQTLLELKSSDFVYSDPPYIGRHVDYFDSWSEEDEILLNNGLKNSNCKFILSTWLSNKYRTNDYVFSIWRDCFVATKEHFYHVGGKESNRNAVYEAILSNVKLKDSITNSEMKSRIKNEKSQLTSKPKVYNLPEQLTLILEEKQMSAMYIK
>NZ_CP007207.1|WP_034098120.1|1469396_1470599_+|IS256-family-transposase
MIERDDLLNNKEFYKSFKNGEDLTSFFKQMHKRAVEHMLEAELDAHLDNEKHQKTFNGNYRNGHGTKKIKTSFGEDEIKVPRDRDGSFEPALVPKRHNIIDGLENIIISFYAKGMSVSDIEEQIKEMYDFDISTSTISRITNAVSSEVVTWQNRPLDDLYLIVWMDGIVFKVRENSKVINKTIYLAVGLNREGRKEVLGMWLGKNESSSFWMSVLTDLKARGVEDILITATDNLNGFTQTIRAVFPESQTQICVVHQIRNACRYVVWKDKKQFTTDMKLVYTAPTKQAAALALEDFAQKWESKYGYAIKSWRENWDELTVFFDFPLEIRKIIYTTNLIENLNGKIRKYTKNKMSFPTDDAVLKSVYLALKEATKKWSMPIQNWGIVLNQFNLIFDKRLRL
>NZ_CP007207.1|WP_038467167.1|1467775_1469305_+|IS1182-family-transposase
MQGKKNFTPQLFVSVNLLDMVPADNFYRRLSTELDLHFIYKATQKYYGKEGQESIDPVVFFKILLVGYLNNINSDRHLIAYCSDSLSIRLFLGYDVYESLPWHSTISRTRQLYGESIFLDLFKLVLKMCVSKGMVRGKRQAVDSVFIKANASMDSLVEKEVLDDVSAFVNELEENSEFKTTSTRKKLVEQHHHWKKEAYKDQPNPSLNIDKVDEHGNLIRPRFVSNHTHYSPTDTDARVSVKPGKARQLNYFGQIAVDDAHHVITGACSDFADKRDSQCIEKIVELTEDNLNENDIELEELLADGGYSSGEALAYLHKKNIDAYIPNFGQYKAFREGFIFNKELHQYECIKEGSNKAILLFKGEKTDSKGYIKRTYRSSESFCKNCPLREQCCGKTTKYKKIDDSIHKEHYDRMHKKLTQNPEYAKKMVRVRSKTVEPVIGTLVNFTNMKRVNTRGIRNANKHVLMASLTYNLKKYLRFVVKKPSILTQVLSQKVGKNQESFGSITQSV
>NZ_CP007207.1|WP_038467163.1|1466584_1467538_-|SIMPL-domain-containing-protein
MKKNLLFTFTILSSTFGFGQEAGNINYQNQVRYQENNINVDLPNDNDLYFSVKGLTNVRADNYVAIFNTFQVGKTTEEVNELIEKRINQAVSELKLTKGIEVFVDMISFVPIYEFEVEKKVFSKKTYNEVPVGFELKKNIHIKYSDQNLFNQIMSIMSKNEIYDLVRVDYFSNNLESVKKELMNKAKVNLQEKIKNYETILGVSFLTNEKSISEGYKVVFPVEMYKSYQAFNSTSLNLKKSANINSVEKTTTLYYQPIVDKEFDFVVNPTVLEPVIQVMFEIKMKINRESKQTLKNNKEYMLITPNGEMKNLNINQQ
>NZ_CP007207.1|WP_038466437.1|1465074_1466277_-|IS256-family-transposase
MIERDDLLNNKEFYKSFKNGEDLTSFFKQMHKRAVEHMLEAELDAHLDNEKHQKTFNGNYRNGHGTKKIKTSFGEDEIKVPRDRDGSFEPALVPKRHNIIDGLENIIISFYAKGMSVSDIEEQIKEMYDFDISTSTISRITNAVSSEVVTWQNRPLDDLYLIVWMDGIVFKVRENSKVINKTIYLAVGLNREGRKEVLGMWLGKNESSSFWMSVLTDLKARGVEDILITATDNLNGFTQTIRAVFPESQTQICVVHQIRNACRYVVWKDKKQFTSDMKLVYTAPTKQAAALALEDFAQKWESKYGYAIKSWRENWDELTVFFDFPLEIRKIIYTTNLIENLNGKIRKYTKNKMSFPTDDAVLKSVYLALKEATKKWSMPIQNWGIVLNQFNLIFDKRLRL
>NZ_CP007207.1|WP_038466434.1|1463961_1464174_-|T9SS-type-A-sorting-domain-containing-protein
MVQVTDSHIYLNKPISEIDITIFDTFGKLIYQTKTDGKDLELSIPNLASGLYIVKLNSKEQTETLKFLEQ
>NZ_CP007207.1|WP_038466431.1|1462646_1463897_-|hypothetical-protein
MIKLLFKYKYQIILIIIGILWVSFLNELMQIKHQNNICNDCDNYRESASYLYNNFKTHYFRPIGMAIITGVPYLFRATDATIYQFSLIINIMAWLGTALLLFNFLKKQLPINKALLWTLLFYSILSFVFINFQLLTESIFTFLMITVFYFLEKYYTKKSFHFLSLAVSILLFAMLIKPSVKFFAIIIFIYFGKTLLKNHRNKSILFIYLSLSLIAFQYVKMKNDYGNYTLSYIDSVTYYNYLGSKAFYYKTNHTLNQNTNKRAKFLAKFSYPEQRNIATKDLLSQINNNKFNLIKAYISDLSENTKTPNGSIETSKNLKNKDYYNTLKKCLSIISKYQNRFFTIVGFILALYYLFKSYKHEFLYSLISFYILYTITISGVSCSQGDRFHIVFFPFVIILFAKLYNEKINLFSKKHK
>NZ_CP007207.1|WP_038466428.1|1461933_1462650_-|glycosyltransferase-family-2-protein
MKKLSIIIPVFNEARTVHLILNKIEHVNLSQNIVKEIIIVDDCSTDDTLEVVKNYISTHIELPIELLQHNKNKGKGASLQTGIKNATGDYIIIQDADLEYDPKEYNILLQPILDGHADVVYGSRFMGGNPHRVLFFWHTIGNRFLTFLSNMFTNLNLTDMETCYKMFDTKILQSISLQEKRFGFEPEVTAKVSRIKKIRIYEVGISYYGRTYDEGKKINWKDGFHAIYCIIKYGFLRL
>NZ_CP007207.1|WP_038466425.1|1461393_1461573_-|hypothetical-protein
MTIARKLKGIRKVNNAPTTDSTEEQNQHSTSQMSYDQRTNNYDLLISLLQNTTNYNPKG
>NZ_CP007207.1|WP_038466449.1|1473423_1475007_+|IS1182-family-transposase
MQGKKNFTPQLFVSVNLLDMVPADNFYRRLSTELDLHFIYKATQKYYGKEGQESIDPVVFFKILLVGYLNNINSDRHLIAYCSDSLSIRLFLGYDVYESLPWHSTISRTRQLYGESIFLDLFKLVLKMCVSKGMVRGKRQAVDSVFIKANASMDSLVEKEVLDDVSAFVNELEENSEFKTTSTRKKLVEQHHHWKKEAYKDQPNPSLNIDKVDEHGNLIRPRFVSNHTHYSPTDTDARVSVKPGKARQLNYFGQIAVDDAHHVITGACSDFADKRDSQCIEKIVELTEDNLNENDIELEELLADGGYSSGEALAYLHKKNIDAYIPNFGQYKAFREGFIFNKELHQYECIKEGSNKAILLFKGEKTDSKGYIKRTYRSSESFCKNCPLREQCCGKTTKYKKIDDSIHKEHYDRMHKKLTQNPEYAKKMVRVRSKTVEPVIGTLVNFTNMKRVNTRGIRNANKHVLMASLTYNLKKYLRFVVKKPSILTQVLSQKVGKNQAFLKTILFNLKRMFLRHQNFTTLNLTQK
>NZ_CP007207.1|WP_038466452.1|1475111_1476176_-|hypothetical-protein
MKKTLKYIFVIILFIYFIVNNTEFWDIDVWLRNKLYFKKIPAEFTTYKNINQNKITFGDKEMTLMFDSESFIYEYLLPNNNLIVKTINQGVFTFYKININGEIIDKTIFKATDDLGEETIIRGFIINTKEKYYTTWIFDGNKSHKNFVLQNENLIDSNEKNTIDEIKKNAKYINVDYDYNYPINKGRRTVNIITYLMNKSWYQYYCTEDFEIDLDYMFENSEYSGSLFQQYNYGSHEWEAIPNDKITYKHFHKFYEERITSSSGGNSSSTTTFEKGRLYTNVLSNKDTLKLFEDMYLDRSCFLTRIEINGKEIGTFSKPNNSTTSTYMFYENPKLNYSLFTNSMDKMYIIKRKK
>NZ_CP007207.1|WP_038466455.1|1476500_1476863_-|hypothetical-protein
MTENIFNDWLDLILKTEKPNADIQAYYFGILETEDGYETYLVGSEEFDEEDEDWACNTDFEPKNKYLRLGQNGVDWELILADVKKNIENYIQSPNFKNSFLEKAKAIATGFDGGDLLILK
>NZ_CP007207.1|WP_038466458.1|1478899_1480252_+|AAA-family-ATPase
MLIRIVAKNLFSFKEETEFNLFPNKTQRLSHHKVKKNDFDILRLSAIYGANGSGKSNLIKVVSLLESMIVDEGKLLPYKDFEFKLKEENSNKEPSSIGIEFFVREKFYYYSISFKDGIIFNEYLAESKKEKDILIFERNYENDIQSINFFDGYTDNEKNKLFVDVLAEKLLQKDELLISFLNAKYKNDFEDIENVFFWFDKLLVIIKPDAKPGILAHLIDVNNDLSDFANTFIPSLNTGISKLKTIKKKFIDFTSNKEQIDLITDKIKKSPDNQIVIENSETGEEATLVYEEDEIFIKRLVTSHLNDKGNEVEFEVGLESDGTKRLIDYIPAIHSILHQESVYLIDEIERSIHPITIKEIISKISLDKNAKGQLIFTTHESSLLDQEILRPDEIWFAQKDIDGSSKLYSLSDFNIHNTANIENGYLNGRYGGIPFLTRLQDLNWHKYEVS
>NZ_CP007207.1|WP_038466461.1|1480238_1480922_+|RloB-domain-containing-protein
MRYLSRNKLYEKVEVNTDAKKIYIFCEGQDTEFKYFKYFSGLSSNIDVIPIPNTNGQSDPVKLKENASLLFFGDEDTCIKYELSKEYKDEVWFVIDTDRWNEGDKINILKKFCLDQYCNENPWEVAQSNPCFELWQYYHFHNDKPESEDVLNSASFKEYVNTKIKGGFDNRSMPIEIKEAIKNSLENFEIEHNQPKLFSTEVHNLAEIIVNFIGNQLEKAKNMTQQV
>NZ_CP007207.1|WP_016361990.1|1481126_1482329_+|IS256-family-transposase
MIDKDNLLNNKEFYKSFKNGEDLTSFFKQMHKRAVEHMLEAELDAHLDNEKHQKTFNGNYRNGHGTKKIKTSFGEDEIKVPRDRDGSFEPALVPKRHNIIDGLENIIISFYAKGMSVSDIEEQIKEMYDFDISTSTISRITNAVSSEVVTWQNRPLDDLYLIVWMDGIVFKVRENSKVINKTIYLAVGLNREGRKEVLGMWLGKNESSSFWMSVLTDLKARGVEDILITATDNLNGFTQTIRAVFPESQTQICVVHQIRNACRYVVWKDKKQFTTDMKLVYTAPTKQAAALALEDFAQKWESKYGYAIKSWRENWDELTVFFDFPLEIRKIIYTTNLIENLNGKIRKYTKNKMSFPTDDAVLKSVYLALKEATKKWSMPIQNWGIVLNQFNLIFDKRLRL
>NZ_CP007207.1|WP_038466466.1|1482441_1482924_-|hypothetical-protein
MKNFIFLSIISIISSCTKDNPEPTSTNLDNSVIIYLNSSEGNNLLNTINYNSNNYRIYYKNGNEYIEQNNSNLDYPKNFFINSETNPISMKLFLNHLSTETNPITVVKWNDTESDTLKTFFRRGTDNNTDYEICEKIWLNDALIWDINNNQNSRQITIIK
>NZ_CP007207.1|WP_038466470.1|1482935_1484120_-|C10-family-peptidase
MYRKRRLNLFKNFILAIAGLFIIFSCENEKINKTTTINQHEVTQKIAEKVALNVFRFKNNELAKSAQITKSIENVTTYKMSTTSDVNAFYVFNYNEGGFSIVSADDRVSPVLAYCDEGAFSTNINEIPEPVQSWMEEEKEISQTVKIENSIQTPEIKLDWDSALNKLPPPKDPNWCTDNFYQKGPLLTTTWDQGSTYNNLTPMVCPNSSGGRAPTGCIATAMAQIMKYWHKPNSYNWINMPNSYGTVDTQSLMRDIGNGWINYGCNGSSQQSNNISGRFNNFGYNASFTDNYSASLITQQLSWNRPVIVTGGRKKDGISWNMYTEGHAWVCDGYQQIDIRYMDENNNCQGWGYLYLHMNWGWGGYCNGWYNAHNFNPSTYTFNFKRKIVYNITP
>NZ_CP007207.1|WP_052079098.1|1484507_1485590_-|hypothetical-protein
MVLIVIIIFISFIALSIAGLKLLKKGANSREITIATFYIFSIALFAIGMTTHSNSYYKAIDPVDMECYSPFSDKNAITLIFYTLVFNISLLLVWVKGNILPPLALTLSLIFILIGTFLNVGVLFQISVHNTETLNTYNSRGEQILFLFAPLFSVILGVYFIYKATTQEIKEAFEKAYSNKIINALNTFLSTKSRNPFWIVLLMFPVFFIVTLLLILFGQDTNSIIKVFTDTATWKFSQQVHPPILDHKGHYLCTVATSGHPKIVKPIRFGKRNGNRIIVNRQLLIANAFEEMIQDISPRLHFKIRTIYDQYGYNLSKKINTTFLASATYILMKPLEWIFLICLYLICNKPEQKINKQYAQ
>NZ_CP007207.1|WP_106388619.1|1485893_1486808_-|IS3-family-transposase
MARVIEQSYSKKKEKAFKIKWVCQSLGLSKQAYYQQIKRDKARDLQRDKIIEWVIEYRKILPKTGTRKLFEYLQPKMQEINIKMGRDALNDLLRSRGMLIKKTKRYFITTDSKHFFHKSPNLLTDLKITHSEQVFVTDITYIKTDAGHSYLALVTDAYSRKIMGWSLQDNMKVSMVKDALNMAYKNRVFNHKNIIHHSDRGIQYCCPDYSQYAENKGFILSTTQQYDPYENAIVERINGILKYEFGLRNTIKSVDIAQKMVTQAVDLYNNLRMHWSLDFKKPQEVNLQYNKQENKNYKKEKKVA

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Crispr_ID: NZ_CP007207_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_5

1490993-1491143

Orphan

Consensus_repeat	Method
TGCAGTTAGCAATATCGTGAATGCA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP007207_5

>merge|NZ_CP007207|5|1490993-1491143|CRISPRCasFinder
TGCAGGCTTCAATATCGTAATTACAGGTTCAAAATTCATGAATGCAGTTAGCAATATCGTGAATGCATTATGGAATATCATAAGTTCAGTTAGCAATATCATACTTGCAGTTAGTAATATCGTGAATGCAGTAAGGAATATCATACATTTT

>NZ_CP007207|5|5|1490993-1491143|CRISPRCasFinder
TGCAGGCTTCAATATCGTAATTACA	GGTTCAAAATTCATGAA
TGCAGTTAGCAATATCGTGAATGCA	TTATGGAATATCATAAG
TTCAGTTAGCAATATCATACTTGCA	GTTAGTAATATCGTGAA
TGCAGTAAGGAATATCATACATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_038466489.1\|1496066_1496567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466495.1\|1498894_1499782_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_162179067.1\|1500794_1501628_-\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP007207.1\|WP_074460308.1\|1506017_1507289_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341191
NZ_CP007207.1\|WP_038466461.1\|1480238_1480922_+\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP007207.1\|WP_038467178.1\|1489889_1490579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466475.1\|1486750_1487134_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_016361990.1\|1481126_1482329_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP007207.1\|WP_038466492.1\|1497406_1498624_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP007207.1\|WP_038466486.1\|1493665_1494070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466504.1\|1507312_1512175_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP007207.1\|WP_080731695.1\|1491191_1493669_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173822
NZ_CP007207.1\|WP_038466470.1\|1482935_1484120_-\|C10-family-peptidase	unknown	unknown	gnl\|CDD\|366737
NZ_CP007207.1\|WP_016361990.1\|1488366_1489569_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP007207.1\|WP_038466466.1\|1482441_1482924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466478.1\|1487341_1487767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_052079098.1\|1484507_1485590_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466501.1\|1503918_1506021_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|280533
NZ_CP007207.1\|WP_034098978.1\|1499926_1500208_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP007207.1\|WP_106388619.1\|1485893_1486808_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_106388619.1\|1485893_1486808_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.54123e-32
NZ_CP007207.1\|WP_162179067.1\|1500794_1501628_-\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.48626e-15
NZ_CP007207.1\|WP_074460308.1\|1506017_1507289_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341191	cd17500, RMtype1_S_MmaGORF2198P_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Methanosarcina mazei Goe1 S subunit (S.MmaGORF2198P) TRD1-CR1, and Flavobacterium psychrophilum FPG3 S subunit (S.FpsFPG3ORF6820P) TRD1-CR1. The recognition sequences of Methanosarcina mazei Goe1 S subunit (S.MmaGORF2198P) and Flavobacterium psychrophilum FPG3 S subunit (S.FpsFPG3ORF6820P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains TRD1-CR1. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	6.46199e-110
NZ_CP007207.1\|WP_016361990.1\|1481126_1482329_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.37866e-108
NZ_CP007207.1\|WP_038466504.1\|1507312_1512175_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	1.89565e-07
NZ_CP007207.1\|WP_080731695.1\|1491191_1493669_-\|S8-family-serine-peptidase	gnl\|CDD\|173822	cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.17422e-76
NZ_CP007207.1\|WP_038466461.1\|1480238_1480922_+\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	8.19638e-20
NZ_CP007207.1\|WP_016361990.1\|1488366_1489569_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.37866e-108
NZ_CP007207.1\|WP_038466492.1\|1497406_1498624_+\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.7296e-36
NZ_CP007207.1\|WP_034098978.1\|1499926_1500208_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.47032e-08
NZ_CP007207.1\|WP_038466501.1\|1503918_1506021_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	8.59659e-84
NZ_CP007207.1\|WP_038466470.1\|1482935_1484120_-\|C10-family-peptidase	gnl\|CDD\|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	1.27913e-40

>NZ_CP007207.1|WP_038467178.1|1489889_1490579_-|hypothetical-protein
MQKVQQKIIDENNSIQKIEVQKNPNDFIPNGYIIHKYEGGISASGWEEIKGDLNKDGIEDVVLIIKGTDKNKTVIDENRGKLDRNRRGIIVLLNKGNYYELAAKNYDCFSSENEDGGVYFAPELDVNIEKGNLNINYGHGRYGNWSYTFRYKKGDLELIGFDSYSSRGPVPQFEVSINFLTKKKLTRDNLNKDDDGDNYEEDFKDTWEIIKDKKIIKLSEIKDFDELDF
>NZ_CP007207.1|WP_016361990.1|1488366_1489569_+|IS256-family-transposase
MIDKDNLLNNKEFYKSFKNGEDLTSFFKQMHKRAVEHMLEAELDAHLDNEKHQKTFNGNYRNGHGTKKIKTSFGEDEIKVPRDRDGSFEPALVPKRHNIIDGLENIIISFYAKGMSVSDIEEQIKEMYDFDISTSTISRITNAVSSEVVTWQNRPLDDLYLIVWMDGIVFKVRENSKVINKTIYLAVGLNREGRKEVLGMWLGKNESSSFWMSVLTDLKARGVEDILITATDNLNGFTQTIRAVFPESQTQICVVHQIRNACRYVVWKDKKQFTTDMKLVYTAPTKQAAALALEDFAQKWESKYGYAIKSWRENWDELTVFFDFPLEIRKIIYTTNLIENLNGKIRKYTKNKMSFPTDDAVLKSVYLALKEATKKWSMPIQNWGIVLNQFNLIFDKRLRL
>NZ_CP007207.1|WP_038466478.1|1487341_1487767_-|hypothetical-protein
MALFDPSFIHSYWCNSLLKYEEEFYSDFEILDEDAEVNPFEHDKQIFTYNLLEYVETELQKSNSEDEEIENLISETIALKNNLQNLTKKVVIRKMSIIFSKVKKKGLKLFLDIIDVAKKEIIKKALYGGIGEIEHLTNTLW
>NZ_CP007207.1|WP_038466475.1|1486750_1487134_-|DNA-binding-protein
METPTNQACRKNGYQKVTFEHKLFVIDQINNGQISANFASKKYNISRATIQYWMKKLSNYTNKKTFVSKDDEIRKLKEKIADLEGIRYFQQDVIIAFEKITGEELSKKLLPESLSNPIQKRKKKLSK
>NZ_CP007207.1|WP_106388619.1|1485893_1486808_-|IS3-family-transposase
MARVIEQSYSKKKEKAFKIKWVCQSLGLSKQAYYQQIKRDKARDLQRDKIIEWVIEYRKILPKTGTRKLFEYLQPKMQEINIKMGRDALNDLLRSRGMLIKKTKRYFITTDSKHFFHKSPNLLTDLKITHSEQVFVTDITYIKTDAGHSYLALVTDAYSRKIMGWSLQDNMKVSMVKDALNMAYKNRVFNHKNIIHHSDRGIQYCCPDYSQYAENKGFILSTTQQYDPYENAIVERINGILKYEFGLRNTIKSVDIAQKMVTQAVDLYNNLRMHWSLDFKKPQEVNLQYNKQENKNYKKEKKVA
>NZ_CP007207.1|WP_052079098.1|1484507_1485590_-|hypothetical-protein
MVLIVIIIFISFIALSIAGLKLLKKGANSREITIATFYIFSIALFAIGMTTHSNSYYKAIDPVDMECYSPFSDKNAITLIFYTLVFNISLLLVWVKGNILPPLALTLSLIFILIGTFLNVGVLFQISVHNTETLNTYNSRGEQILFLFAPLFSVILGVYFIYKATTQEIKEAFEKAYSNKIINALNTFLSTKSRNPFWIVLLMFPVFFIVTLLLILFGQDTNSIIKVFTDTATWKFSQQVHPPILDHKGHYLCTVATSGHPKIVKPIRFGKRNGNRIIVNRQLLIANAFEEMIQDISPRLHFKIRTIYDQYGYNLSKKINTTFLASATYILMKPLEWIFLICLYLICNKPEQKINKQYAQ
>NZ_CP007207.1|WP_038466470.1|1482935_1484120_-|C10-family-peptidase
MYRKRRLNLFKNFILAIAGLFIIFSCENEKINKTTTINQHEVTQKIAEKVALNVFRFKNNELAKSAQITKSIENVTTYKMSTTSDVNAFYVFNYNEGGFSIVSADDRVSPVLAYCDEGAFSTNINEIPEPVQSWMEEEKEISQTVKIENSIQTPEIKLDWDSALNKLPPPKDPNWCTDNFYQKGPLLTTTWDQGSTYNNLTPMVCPNSSGGRAPTGCIATAMAQIMKYWHKPNSYNWINMPNSYGTVDTQSLMRDIGNGWINYGCNGSSQQSNNISGRFNNFGYNASFTDNYSASLITQQLSWNRPVIVTGGRKKDGISWNMYTEGHAWVCDGYQQIDIRYMDENNNCQGWGYLYLHMNWGWGGYCNGWYNAHNFNPSTYTFNFKRKIVYNITP
>NZ_CP007207.1|WP_038466466.1|1482441_1482924_-|hypothetical-protein
MKNFIFLSIISIISSCTKDNPEPTSTNLDNSVIIYLNSSEGNNLLNTINYNSNNYRIYYKNGNEYIEQNNSNLDYPKNFFINSETNPISMKLFLNHLSTETNPITVVKWNDTESDTLKTFFRRGTDNNTDYEICEKIWLNDALIWDINNNQNSRQITIIK
>NZ_CP007207.1|WP_016361990.1|1481126_1482329_+|IS256-family-transposase
MIDKDNLLNNKEFYKSFKNGEDLTSFFKQMHKRAVEHMLEAELDAHLDNEKHQKTFNGNYRNGHGTKKIKTSFGEDEIKVPRDRDGSFEPALVPKRHNIIDGLENIIISFYAKGMSVSDIEEQIKEMYDFDISTSTISRITNAVSSEVVTWQNRPLDDLYLIVWMDGIVFKVRENSKVINKTIYLAVGLNREGRKEVLGMWLGKNESSSFWMSVLTDLKARGVEDILITATDNLNGFTQTIRAVFPESQTQICVVHQIRNACRYVVWKDKKQFTTDMKLVYTAPTKQAAALALEDFAQKWESKYGYAIKSWRENWDELTVFFDFPLEIRKIIYTTNLIENLNGKIRKYTKNKMSFPTDDAVLKSVYLALKEATKKWSMPIQNWGIVLNQFNLIFDKRLRL
>NZ_CP007207.1|WP_038466461.1|1480238_1480922_+|RloB-domain-containing-protein
MRYLSRNKLYEKVEVNTDAKKIYIFCEGQDTEFKYFKYFSGLSSNIDVIPIPNTNGQSDPVKLKENASLLFFGDEDTCIKYELSKEYKDEVWFVIDTDRWNEGDKINILKKFCLDQYCNENPWEVAQSNPCFELWQYYHFHNDKPESEDVLNSASFKEYVNTKIKGGFDNRSMPIEIKEAIKNSLENFEIEHNQPKLFSTEVHNLAEIIVNFIGNQLEKAKNMTQQV
>NZ_CP007207.1|WP_080731695.1|1491191_1493669_-|S8-family-serine-peptidase
MMKKIFIILALLLTFGIYSQEKVSYNTKNEAVNFIKSNNLIYLETNEPLSKFSNEKITDSGDNFIIIQTTEENYREKFETFSKAFKNVEPVLIYEDGIKQICFDEIIIKTKSNLEDILKGIDYTFKANEFEKNQYLVRLNNYDTSKTFDLINTLFKDDRIEYVEPNFIKLNVLQAPPNDPLLSSQWSINNNGYLGGTVDADMDVDDAWALATGTGIKVAVLDVGVDLTHPDLQANLLPGYDAINGVPGGGYVGASFHGTACAGIIGAVANNGIGIAGVAYNSKIIPIRVGSATSITVSAAATGTNWAWQNGADILSNSWGGGSASTAVNDAINNAVTSGRGGKGCIVLYSAGNSNSSVAWPALNPQVIAVGATSQCDQRKSPTSCDGETFWGTNYGTNLDVSAPGVKIYTTDIVGSTGYETGDYAPSFNGTSSACPNTAGVMALILSLKPTLTGVEARQVLEQNTDKVGGYTYTAGVTGQPNGTWSNDLGYGRVNAYKALQSIATFISGADKICTTQTYTLQNNFNNFSVVWSVQGALTFTSSGNTITVTTTSTIGSTAIIKATLSNGTVITKTISIGSPLLPATGADSKPIWVRKGMAIGFAVTPIIGATTYDWSIVRTPYPDFPTVCALPIQAKFTLNGTQTINNTTLTTVNINVGTCSSEYMITCTAKNGCGIGTEVYYRYLTAGASGTSPCRKTTTTLSRYNVAQNPLKEGVLKIKIGGPKVVLDDDLGGDSPGIVDGDGPCEGPYPAPVSKPVRTITVLIYDFNGEKVYANKFEIVNEDKENGMVLKEELTIDDLKLKADKYILVIDDGNKPEKQIIVVE
>NZ_CP007207.1|WP_038466486.1|1493665_1494070_-|hypothetical-protein
MKNLKTIGLLILLTVVTVSCHKDDPTPTPVVSPCDCDTSTTIETKSNVTGVLKKNSGTFKIDNVTANYYIQVGTPPGITYYYLICNDSILSGITVTENVAINVTFSGSVKEFCAPTGIIFLYPTQQIKLTQIQQ
>NZ_CP007207.1|WP_038466489.1|1496066_1496567_-|hypothetical-protein
MKTLIIIAFSIFSLSLYSQKDKPKRSSYPLEIAATETEQYAMDVPESPYFVKDKILQIYCGEKIFVECEIQADSISKMKVVEKNINPEKTIVIEFTQNSENRKEISTQLWVKNPFSKILRYDAFMFTPISKQWKSTSIIPIRPTLQNFEHWPHAIITLALQNWKLE
>NZ_CP007207.1|WP_038466492.1|1497406_1498624_+|site-specific-integrase
MASVKLILRTHQADQTGHSPLYIRIIKDRKTKFITAGVKLKENEWDEVKQKVKKNHPNSARMNASLSQKIADAEGQVADMERKVKSISISKLKDAIKGKVVPNFFEYAYARCEKIKGSVSFGTYKNYTLYTKKFEKYVGSKDVYFDDITVTVLKDYMAHMGNILKNGATTQRYSIMILAIMFKEAIKEDIIPEYMYPFNKLTLRKDTEKRVFLSKDQIEILTNLELKEGRKADLWRDLFLFSIYAGGLRFSDVIELQYTNYNSEEQRIKKVIRKTGRLHQFKIGKVAIDILNKYIKEDAQLDDYIFPIITDKATYKKSEEMRYFISQRENHSANFQLNRMGKIMKLPFPLSFHLSRHSFATNALNNGMRIEHVSKLMDHTDISTTQIYAKIISEELDKAVDNYIF
>NZ_CP007207.1|WP_038466495.1|1498894_1499782_+|hypothetical-protein
MQTAEFVELLAVPQALAKNPLFDIIVEDKINIQSYCNALIAKILELKQSQFPAFIDYQFNQVKNPEIWICKLEKLLANNEAFFSSKTAMSRYNKLYILIEKKRTELQYSRVLDNKPKASKRQINADTDERYFSFFEAKSYINSLDNFNDKIIYLMDEIFEYNQADIVSLNNKLQPYDKQCNQLIEQLQIMRKVKNDFEKENQEKQANENSSNIPFQKIKLNGPTNIITNAFKQMMVDVKPNGKPYIQGKIKDISQIICLIFDDEKGEPLSQATVQTYLSPNRTDKDPNNDIKVRF
>NZ_CP007207.1|WP_034098978.1|1499926_1500208_+|helix-turn-helix-domain-containing-protein
MDAIIFTKDQFTDLMTKLDTIQSQISIKADPKKETFLDNQEFLLLMKISKRTAQTWRDEGKISFSQVGNKIYYKLSDVEKLLTEHYNKSFKGR
>NZ_CP007207.1|WP_162179067.1|1500794_1501628_-|IS982-family-transposase
MNCELEYKSGVGRNQKMSDLEVVALSLTAEFMSIDSENSLFKSIDANQIPNLIERSQFNKRRRKLFLFTEQVRLKLASRFLEFEDYFIVDSMPLEICKFARHRRIKICKKEFETAPSKGFCASQNTWFYGYKLHGVCSISGIFHSLDITKAEVHDVHFLKNIKQQMSDCVLLGDRGYLSKTIQLDLFQTVNIKLETPKRKNQKDYKPQAYIFRKSRKRIETLFSQLCDQFKIRNNYAKSFQGFKTRILAKITALTLVQFINKFIFDRPINNIKNQII
>NZ_CP007207.1|WP_038466501.1|1503918_1506021_+|type-I-restriction-modification-system-subunit-M
MTNEQLKKLEKDLWDSANSLRAYGGLKAADYAVPVLGLIFLRFAENKYSHYEPEILKEYEAEKGTRLERPIHSIALSKCGFYLPDFARYDFLLNLPGDESLAKKLREAMEGIEKYQDDKFKDVLPKEAYFEIEKKKADILPQLLKTFSDIPKNATGDIFGKIYEFFLGEFAMSEGQKGGEFFTPTSVVRFIVEVIEPYAGKIYDPACGSGGMFVQSATFVKEAKHDLSDIYVYGQEYMGETARLAKMNLMVNNIRGEITETNSYENDPYEGLGKFDFVMANPPFNVKSVKESTVKNDERFYKYGLPKNKGKNTNDSITDANYLWISLFATSLNDKGRAGFVMPNSASDAGNSEYEIRKKVVDSGIVDCMVSMPSNMFLTVTLPATLWFFDKQKINTERKDKILFIDARNTYHQRDRAHREWKEEHIQNLTAIVRLYRGENERYLELVGQYINQANEAMVKVPTAFNDYFTILKSTIINLQHYSRDSKTKHKAEAFKKITESGLLDKITSLSLPNLPLPVIAKNEAITSNEQQLSYSKELSVYNAQVQEIETALKTSKEALLEVLAIADKQIKVKNDKDWTGLGLNGVKQIEELQQNWKNSIDEVVYYQTNIDWLQSRFPKAKYADVVGLCRVADKTEYVEEQDYSMNAGRYVGIDADNDGFTREEFKIVIRNNNNKLKELINKSTYLEGIILENLIQLTE
>NZ_CP007207.1|WP_074460308.1|1506017_1507289_+|restriction-endonuclease-subunit-S
MIFTEYKIDDLCLYITSGGTPKATNLQYYDNGTIPWMKTGEIHKGYIYNTETHITQEALKNSSAKLIPANSIIIAMYGDGGTAGNVAINKIPLSTNQACCNLVVNSKICNYQYLYFFLKGSYNDLVALKSGGSQQNLNGKTIKEFKILLPALPIQNIIASILSAYDELIENNKQRIKLLEEMAEEIYKEWFVRLRFPGYENIKQVDGLPECWIKKPIDEFLSFSMSKAKLKKFNDTKTYIATADVTDINITGQGEVIDWENKPSRAQLVPELNSVFFARMSNTYKVLVFSKTNKELIDELALTSGFLGLKALNEETLPYLFWLIKSDTFHNYKDVFANGATQVSLTNEGFHNIKLVEPSLSVIEKFGKSTSAFLSEIITLNKKNQVLQETRDLLLPRLISGKLSIEHLGEEELTMVAEPRENY
>NZ_CP007207.1|WP_038466504.1|1507312_1512175_+|DUF3883-domain-containing-protein
MEVSNVLTIANQDILDLIAKRRDIYIKDPLLIVEHFNNENKIIDEYNGRQLLEMIQNANDESDTAKPKKVKITLENNTLLIANNGNPFSIGGVESLIYSDLSPKVMEENKVGQKGLGFRSVLNWSEEIYIASYDLHLKFSKQHARTFLEGLIDENPEIQTVLKRKTKKSFSISVLRCPYLEEDNNHKKEIDYDTVIELSLKEGIGQDIKNQIDKDIIPEILIFLNKLEEIEVQTDEHHFLLKKEAKDNGILITKTDFLDEQNNDSCLWFTSEEKGKLTNNEVTKNYELKIAYNPNTKPSIQKLFSYFRTDVDFPYPVLAHGSFELTGNRNQLIEDENGFNKMLLDKLAKLLVDCSIKLTKENKCNYDALKLIIPSITNNSSLNNAPWNFNKAIEVSISDTPIFPSINNKYLKLSENIKFYELPIKNSIPKKAYLHFTSLLQATSDKEIIYYLSTLKINLKYPDSEFTNKINQIIDNDFLTEKQRIDWIYLVCEKTKEIYSGKSPTLPFLLINSEDKRIKSFDTVIVPPKEVTYKLPKGIKLQFLNQDLYRRIRSRFGNIPPRQVIEKLNLYNVAEYAMNVVVQKIISSTNEIIRIGKKDKVNAIAEMHRALFSIYNSLDDNTDTKNTFPVTLTSPYLFTRNNELKEANKLYFGKEYALGYLMEDLLNEVKEDVFVGSLEQNGLIGGRPESEDLMSNYSVEKYLKWLGIADFPKKIKKEITSYRYKDDSYIRNIISSIKYPFTTPTFNDVIVNLEEMKTCWNFRSNVLWYEHFEEIVNGASFEILLTWFLKDNELYSSIIRNQENPQSNFTFEYPKKQYLRNIPHIHHKSFIYYFLQKKEFIPVENGEKSRPSNCLLDSNNLSPLVKTPKINYTAASFIKNNIDEEQIDYFLKRIGLKDSLKDLTIQSLYSLLNQHNTHFSEATSNIQSFYMAIIEATKNREVIEDSIERKKYFETGNIYAYFEGKNSFAPINEVTYVDNPNFSQELLKKLKIAKLPHRAGNQRIYSLFGVQPLDYIKFNVQKNIESNHKLNEAFVGELNEMKPHLFAYRFQKGLKKTQLDFELSAIKNIKIIIAFNIDVKYRLNGVDNDLALNKYEYIQDDVSKIFYIKLDRDNSNYQELKKDYRLKETIADIICGALKVTENRKDFILLLGESPSNWIHLLKREFEDYETIEKEIIGKFEGVLSSEQRFWKLILDIKEIKFKSEIDLNSDFIHSKLFVKLGKDEFFEIFRKLDYNNLSDRKNFLYIQKIFKYIKIDLSDFNAFSYKILNFESYLDNQLYTYHKVFSEKYASFLYNKKQSNGFIEKCEQVAKFNSFTVSNSINFEIKKAHKLAISKSFAGINYPAIEDILKIDLEAIYNKNIKALESDLRLLPNFNDTIFNDNKYDTAFKNAVFFNEVENLKIDLIQKFNTLTRDEGELQINIANTSVAFSDNNVNDLLDFIEEQVKNNDFKMEHYDPTKAPEANNNGKGNSSTGQSFNGKSKKYKNEDIGFIGEKFAFELLKKEFDSVEWVSEYAIKAGFPNGKDGLGYDFECKKGEETRFVEVKSSVTKNYSFNISTNEVKIGHSKEKSFDILLITNLLSEDINFKYLKNIFNYTNNESFLENTKFLVENDSYKIKFK

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Crispr_ID: NZ_CP007207_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_6

1553182-1553295

Orphan

Consensus_repeat	Method
TCTCAACACTTTTTTGCGTTCAGTTCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007207_6

>merge|NZ_CP007207|6|1553182-1553295|CRISPRCasFinder
TCTCAACACTTTTTTGCGTTCAGTTCGGTTTTTTAGGTTTCAATTTTCGGCAGTTCAAAAGTTCAGAATATTTTCAGAAGTTTTCTCTCAACACTTTTTTGCGTTTAGTTCGGT

>NZ_CP007207|6|6|1553182-1553295|CRISPRCasFinder
TCTCAACACTTTTTTGCGTTCAGTTCGGT	TTTTTAGGTTTCAATTTTCGGCAGTTCAAAAGTTCAGAATATTTTCAGAAGTTTTC
TCTCAACACTTTTTTGCGTTTAGTTCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_038466604.1\|1552329_1552926_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_162179067.1\|1545966_1546800_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP007207.1\|WP_034098013.1\|1560566_1560875_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP007207.1\|WP_038466586.1\|1543049_1543511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466612.1\|1555922_1556327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466589.1\|1543685_1545086_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_123960864.1\|1554687_1555710_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_123960859.1\|1546834_1547068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466629.1\|1560890_1561232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466620.1\|1557211_1557724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_144242206.1\|1550547_1551096_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466592.1\|1547064_1547253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466601.1\|1551079_1552033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466626.1\|1559290_1560577_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP007207.1\|WP_038466606.1\|1553549_1554356_-\|DUF4393-domain-containing-protein	unknown	unknown	gnl\|CDD\|379564
NZ_CP007207.1\|WP_052079135.1\|1548608_1549610_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP007207.1\|WP_038466615.1\|1556530_1556986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466623.1\|1557906_1559307_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|238326
NZ_CP007207.1\|WP_158409053.1\|1556348_1556510_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466595.1\|1547472_1548612_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|370563

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_052079135.1\|1548608_1549610_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	9.79568e-112
NZ_CP007207.1\|WP_162179067.1\|1545966_1546800_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.48626e-15
NZ_CP007207.1\|WP_034098013.1\|1560566_1560875_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.66892e-09
NZ_CP007207.1\|WP_038466623.1\|1557906_1559307_-\|DNA-mismatch-repair-protein	gnl\|CDD\|238326	cd00583, MutH_Sau3AI, MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex. MutH is homologous to the type II restriction endonuclease Sau3AI which also recognizes the d(GATC) sequence however, Sau3AI cleaves both strands regardless of their methylation state. The active form of MutH is monomeric while that of Sau3AI is homodimeric. In addition to MutH, MutS, involved in mismatch recognition, and MutL, involved in mediating the interactions between MutH and MutS, are essential in initiating mismatch repair in Escherichia coli.	8.22367e-45
NZ_CP007207.1\|WP_038466626.1\|1559290_1560577_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.33346e-63
NZ_CP007207.1\|WP_038466606.1\|1553549_1554356_-\|DUF4393-domain-containing-protein	gnl\|CDD\|379564	pfam14337, DUF4393, Domain of unknown function (DUF4393). This family of proteins is found in bacteria, archaea and viruses. Proteins in this family are typically between 254 and 285 amino acids in length.	5.55144e-55
NZ_CP007207.1\|WP_038466595.1\|1547472_1548612_-\|restriction-endonuclease	gnl\|CDD\|370563	pfam09565, RE_NgoFVII, NgoFVII restriction endonuclease. This family includes the NgoFVII (recognizes GCSGC but cleavage site unknown) restriction endonuclease.	3.62031e-05

>NZ_CP007207.1|WP_038466604.1|1552329_1552926_-|hypothetical-protein
MVTLEDKYIQELNFDAINKNIEQNLNLISKYPRNSFLNSFIVLTSENKLPANPKKAIIDLMKIEQLIDVPNEHMLNVTKLGYEVVRKGGWNKHLERERIKSERSDKKDIYDFKTSKWKQKTFFWFFGFAVIGSSLSVYNFAVNLSPTEKEKKLQQQQELKIHKMEEELTKLHISTLVQKNLDSLHSPKVLTKKIDKEE
>NZ_CP007207.1|WP_038466601.1|1551079_1552033_-|hypothetical-protein
MEKFLLSTYLIKIQNKSKNDQILSRFNETEDFFNYFQTYLNDIFQNIVKTSDSKNSIPLHLTLNTLPTPDDDNRSIYGYFSVGISGEEYNILDTETRERVAEIKKNHAAFRELFFYVKIPKNKDYASLILQRKSKFGVKMVLLKTLNNHFKQKGYLDNYIFINNIIHGRVYRKMMDNGKLKKVDLIKRRLPNSIEEYFENGNIDQQIPGVLKTSMVSSTGLPQNYKDFVDYLFTHQDKERIEIVDNEFDEVEFELELNGKKKTFYVMNKSRIQPDIDVSSELEYNEDGSVKIESLISQSEELIRDLIELRISNDATN
>NZ_CP007207.1|WP_144242206.1|1550547_1551096_-|hypothetical-protein
MMQRINIYRIVKDHLKTLRSLNQSYNFINIGDFLLFFIFPSIISLTLTLLNYNFIKQLDNLIASISILGGFLFNLLAIIYSQIENIKTDVEKLGNNDKNKIEREIKNKFINEIHSNISFAIVLSLFLILSLLSITIEIPEFKYKTLVENIFIFINYFLMQLFTLTLLMIINRIYILFKKTAE
>NZ_CP007207.1|WP_052079135.1|1548608_1549610_-|DNA-(cytosine-5-)-methyltransferase
MQQLLFEVENVPFPTPNNYTFKFIDLFAGIGGFRLAMQNVGGKCVFTSEWETSAQKTYRENFGEIPFGDITKERVKNYIPQEFDVLCAGFPCQAFSIAGNQKGFADTRGTLFFDIEQIVVKHKPKVVFLENVKNLVSHDNGNTFKTIISVLEDKLGYKVFTKILNSMTHANIPQNRERIFIVAFDSNQVENYTDFKFPSEIKLTKTIHDILEKGKQADNLYYQKDHQYYPELEKAMVSKDTVYQWRRVYARENKSNVCPTLTANMGTGGHNVPLIKDDFGIRKLTPKECFLFQGYPENYILPNLANSKLYMQAGNSVTTTLIERISNEIINVL
>NZ_CP007207.1|WP_038466595.1|1547472_1548612_-|restriction-endonuclease
MKSFAEIDIEKNGNYLKLLSAVSKLSGLFSESSVPFINYRVAENIFCRSFDAGNLSRSDTAFDANYNSVGVGLKTFVCSGNSSTEKVAEFNSLSRTLKDFKGKELALKLGEFRNDRINLANRVYDIENSLYHIVARKEKELLLYETDYNIIDVANIHSVKDNKASLQFEDGNNLYSFNYSKSTLFRKFIIPQNAFRLPIDIIEDPYSLLLELFEENKNLKTATDKLVKGENYVILPLYGIQKKEKFIFERSGLNQWNANGRKRDFGEIYIPIPAELHKKYPNFFPEKDQDFNLQIPTGEIFSASLCQQGRKALMTNPNKALSDWLLRKVLQLKEGEMATMEKLDKLGFDSVIITKNEVGDYKIDIMKTNTYTEFNNETE
>NZ_CP007207.1|WP_038466592.1|1547064_1547253_-|hypothetical-protein
MDILDKLNHIPITTFNGKEAKQKSVVMYEDIVKVMCDLKKELLENHTLLYFNGKLIKPKFKN
>NZ_CP007207.1|WP_123960859.1|1546834_1547068_+|hypothetical-protein
MYLYIKCPNCGYNSYNVLNVKTNKEVIMTISKCEPTGCSLQIPEDNIFDEYETFSELQIFSEKRYKIIEMINSDCFD
>NZ_CP007207.1|WP_162179067.1|1545966_1546800_+|IS982-family-transposase
MNCELEYKSGVGRNQKMSDLEVVALSLTAEFMSIDSENSLFKSIDANQIPNLIERSQFNKRRRKLFLFTEQVRLKLASRFLEFEDYFIVDSMPLEICKFARHRRIKICKKEFETAPSKGFCASQNTWFYGYKLHGVCSISGIFHSLDITKAEVHDVHFLKNIKQQMSDCVLLGDRGYLSKTIQLDLFQTVNIKLETPKRKNQKDYKPQAYIFRKSRKRIETLFSQLCDQFKIRNNYAKSFQGFKTRILAKITALTLVQFINKFIFDRPINNIKNQII
>NZ_CP007207.1|WP_038466589.1|1543685_1545086_-|hypothetical-protein
MKHSLTILFLLLNYFVFGQSSRSELANSKIYVRATYFDKKNENIGLQTRTDLTDTIIDKVKYRKFQTSDFIDYSDKREMKTFYETFANGIYSLLDNRKKVLHKINYQTDKEQTGTIFGEQSNILLEFIDTRNSYPRDSLVSTKKTPRKYYLKENSEIYIVIIPDLQSLVVSSNGQFYTKQLMGDNYNDITNGLKNNLTASTKFDIKKGDEIQLFYRRKWYNDTTNLAEYQDKQFKNIKYLSDTIVSNKKTLKFEVEGYNYLSGSYDNPQELLVTITDNGYYVGNQFVSFQDYKTELKIVETENGKELFLQGVTFNTIAGNTYRKIVQAKSDQYRYYILPFFPMPFVEFGNVQGIITYMKIKGIESGTKRERNYITDKTNIRDIISKKRNEVEVVMYFVDEAEVEIVIQDYETDKVVGSSKSKAKKGINTFVVQSDNFEKNKQYSVQINYEGKENSGNFSNSVTTKY
>NZ_CP007207.1|WP_038466586.1|1543049_1543511_-|hypothetical-protein
MNDRNLLKYLIYFSEKKVDLSDEKGKEEIDKIFGWQVFLKNLQILEDDSLIIENNDRNSYSLTEKGKINLTEIKNEIDFENSKQNAELESLKTSTEVNKFLLRTKWLPHIVALVSLIFSIYTYFDAQNDSKKLEERIHKLEKKSETVLNKSKK
>NZ_CP007207.1|WP_038466606.1|1553549_1554356_-|DUF4393-domain-containing-protein
MEEKDTNIKATIDAVTGLVTAIPVYQDTLQPAAKQIGQSLETVTKTVNIALAPIKALVWGYEKIEEFITNRVAEKLKNIPEENITTPPTEIAGPAVEALRFSGNDINLRELYANLLASSMDINTQDLIHPGYVEIIKNLSSDEALLLKIFSVKFIYPLININAEVPDGKGSITEYAYFSHFDKITNLKRPDLIPTYVDNISRLGLTEIPYDQHLTAENTYEPLENDLSLSTLKHKIEILQNRKIVFERKVIKLTNFGRLFIQNVVNDK
>NZ_CP007207.1|WP_123960864.1|1554687_1555710_-|hypothetical-protein
MLVFTIVAFGQNQKVNNIKKQSTNNTIIKSNKIKQNLQKGEAKIYIVKEKSETDYSKYIISLISLLLGIFINKMIDWWNDKSNIKKAGERWIIELRSTEEPIKAQITELERFTENLKKTEWELPNLSIFSVINGDVFKSLDKNELVKYIESKNSKPWYKKSKVEDFKKIIDISNTTHGHIGILVHQFEMLKEKWESLLEGISKTTSSYNKNLQQINHEILTYSVALAREGIDISKDEKYKPLFDLYLTEVSLNRDNPNFNPLDLEEKFFKPVVLILGNLAIDERIIKLATTVTECFNDISAIKAEKKYMISNCTTLIERYKKQLIKLNPLINRIEGETGV
>NZ_CP007207.1|WP_038466612.1|1555922_1556327_-|hypothetical-protein
MKKILFIFLLFISIKSFSQSDDEFQYITSSASGTQVYVHFEKDNYGTKEFWLKMTEPVKSTKGKNGRIIKTGGGYTLEYIKMNCSEKEYSSSNGVQYYKNGNSKHRPEYYDSNDEKIIPGSIMTAVYKFICENE
>NZ_CP007207.1|WP_158409053.1|1556348_1556510_-|hypothetical-protein
MKKIIMLSVIALMINANCLSQEKSRSAKSGRYVTKEYASKNKSTTYTSKTRKK
>NZ_CP007207.1|WP_038466615.1|1556530_1556986_-|hypothetical-protein
MKLKILFISFLIILSCKNNSKSSTEDYDNNSTNYSAEDNRNVDYESDETTEIVDNEVSNNSNIETEKQIDDGNYDASVDYYNPKTGYSATYDLDVDVENGEVVRINFPKGGWLDEDVHPAESRLSPAELNEDGEATMEDENGRTFEVKIKN
>NZ_CP007207.1|WP_038466620.1|1557211_1557724_-|hypothetical-protein
MRINYNLKRHKLLEVLSTQNLNVQLRKEGCLALGISYEEIYSKLNINAFELLIITSELYENKEIGYHNAYNIEGLYSETLGISAFSNGKYKKAHWNEIISKIKDVTQIVIPVLALIIAIITLTTKLENSELKNKKELNQIKASIEKLENKQNIQGLSVNNNRQNIVSKKN
>NZ_CP007207.1|WP_038466623.1|1557906_1559307_-|DNA-mismatch-repair-protein
MKLPYNPSDKNSIIEYAKKLKGKSLRQVCDPTVLEHSYSGKGNFGQVLEKFYFGYEPNSVAEADFAQIGMELKSSPLKQLKNDEFRSKERLVLNIINYVNVVNQNFENSDFFKKNASILLIFYLHNAGYDILDYLIKLVDEWSFPSTDLEIIKKDWQTINEKIANGKAHELSEGDTFYLGACTKGANALSVRKQPFSEIPAKQRAYSFKQGYVNHIIASIAKENKGIYGKLIPNVQVAKKQTIEEIVISKFKPFYGKTEEEIIKILKIKINTKAKSFYASLTKAILGIELDKEIEEFEKAEIIVKTVRLKENDLPKEDISFPNFKYEEIVNEDWEDSDFKDVLEHKFLFVFFQFENEKLILRKVKFWNMPYLDLIEVEKVWTKTKQIVAKGEIVKEIKTNKKGKEIRFTNFPSKKFSSISHVRPHAKDSSDTFELPKKDKLTKQNEYTKHCFWLNNTYVKNEIYLK
>NZ_CP007207.1|WP_038466626.1|1559290_1560577_-|DNA-(cytosine-5-)-methyltransferase
MENKIKVVELFAGVGGFRLGLEGWNNKSASSNYKENFESPYEVVWSNQWEPSTKVQHASMVYETRWDKKSHCNQDISTVEVTEIPDHDLLVGGFPCQDYSVATTLKNSKGLIGKKGVLWWSIHKILSEKENKTKYLFLENVDRLLISPSGQRGRDFAIILKSLNDLGYAVEWRVVNASEYGMPQRRKRIFILAYLKDSTIYNEIKETTSKDWILKDGTLANAFPVQSDDILFPNEFKLKGDIVEISENFNKNGKKGMFENTGIMIDGIVTTIKTKPSYEDKFTILKDIIQNGEVTEEFYIKEEELDKWFYLKGAKKEMRKNAQGFEYNYSEGGMIFPDSLDKPSRTIITGEGGKSASRFKHVIKVDKGYRRLSPVELERLNMFPDNHTKFEGVTDTKRAFFMGNALVVGVIEKIGIALNQKINNEVTV
>NZ_CP007207.1|WP_034098013.1|1560566_1560875_-|helix-turn-helix-transcriptional-regulator
METFGDIIKTERESKGLLLRQVASALEIDQAIISKFERGERKPTKEQVEKFAEFYDLDKNKLITSWLSDQIANTILYEENIGEVLKVAEEKALYLKTIHNGK
>NZ_CP007207.1|WP_038466629.1|1560890_1561232_+|hypothetical-protein
MTKIVKLISETIFKGFIFQISRFLRFLGVLLPTSPRFAGFSRELALEENLAKRVMEEHRAKATMVFHHLRSGGSMEKIVPKGDFFHRSTAWRGCELRNRLFSTKDKISCGTQT

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Crispr_ID: NZ_CP007207_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_7

1565386-1565499

Orphan

Consensus_repeat	Method
TCTCAACACTTTTTTGCGTTCAGTTCGGT	CRISPRCasFinder

1 spacers

PD-DExK,RT

The CRISPR arrays of NZ_CP007207_7

>merge|NZ_CP007207|7|1565386-1565499|CRISPRCasFinder
TCTCAACACTTTTTTGCGTTCAGTTCGGTTTTTTAGGTTTCAATTTTCGGCAGTTCAAAAGTTCAGAATATTTTCAGAAGTTTTCTCTCAACACTTTTTTGCGTTTAGTTCGGT

>NZ_CP007207|7|7|1565386-1565499|CRISPRCasFinder
TCTCAACACTTTTTTGCGTTCAGTTCGGT	TTTTTAGGTTTCAATTTTCGGCAGTTCAAAAGTTCAGAATATTTTCAGAAGTTTTC
TCTCAACACTTTTTTGCGTTTAGTTCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_038466644.1\|1566251_1567349_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP007207.1\|WP_038466647.1\|1567587_1568523_-\|P63C-domain-containing-protein	unknown	unknown	gnl\|CDD\|371127
NZ_CP007207.1\|WP_038466638.1\|1562612_1563191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466629.1\|1560890_1561232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466653.1\|1572565_1573477_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372995
NZ_CP007207.1\|WP_038466650.1\|1570744_1572238_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP007207.1\|WP_038466662.1\|1576600_1577305_-\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP007207.1\|WP_131799732.1\|1568719_1570558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466632.1\|1561289_1562105_-\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP007207.1\|WP_034098013.1\|1560566_1560875_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP007207.1\|WP_038466635.1\|1562274_1562595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_052079102.1\|1563203_1564325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466656.1\|1573637_1575257_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274377
NZ_CP007207.1\|WP_038466623.1\|1557906_1559307_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|238326
NZ_CP007207.1\|WP_038466626.1\|1559290_1560577_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP007207.1\|WP_052079103.1\|1565753_1566251_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466664.1\|1577306_1578614_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP007207.1\|WP_038466659.1\|1575256_1576357_-\|AccI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|286611
NZ_CP007207.1\|WP_038466620.1\|1557211_1557724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_038466615.1\|1556530_1556986_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_038466644.1\|1566251_1567349_-\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	5.0977e-18
NZ_CP007207.1\|WP_038466647.1\|1567587_1568523_-\|P63C-domain-containing-protein	gnl\|CDD\|371127	pfam10546, P63C, P63C domain. This domain was identified by Iyer and colleagues.	7.4738e-36
NZ_CP007207.1\|WP_034098013.1\|1560566_1560875_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.66892e-09
NZ_CP007207.1\|WP_038466623.1\|1557906_1559307_-\|DNA-mismatch-repair-protein	gnl\|CDD\|238326	cd00583, MutH_Sau3AI, MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex. MutH is homologous to the type II restriction endonuclease Sau3AI which also recognizes the d(GATC) sequence however, Sau3AI cleaves both strands regardless of their methylation state. The active form of MutH is monomeric while that of Sau3AI is homodimeric. In addition to MutH, MutS, involved in mismatch recognition, and MutL, involved in mediating the interactions between MutH and MutS, are essential in initiating mismatch repair in Escherichia coli.	8.22367e-45
NZ_CP007207.1\|WP_038466626.1\|1559290_1560577_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.33346e-63
NZ_CP007207.1\|WP_038466653.1\|1572565_1573477_-\|hypothetical-protein	gnl\|CDD\|372995	pfam14279, HNH_5, HNH endonuclease. This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.	0.000178868
NZ_CP007207.1\|WP_038466650.1\|1570744_1572238_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	3.06105e-37
NZ_CP007207.1\|WP_038466662.1\|1576600_1577305_-\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	2.53716e-33
NZ_CP007207.1\|WP_038466664.1\|1577306_1578614_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	6.00294e-27
NZ_CP007207.1\|WP_038466656.1\|1573637_1575257_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	gnl\|CDD\|274377	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. [DNA metabolism, Restriction/modification].	3.00064e-08
NZ_CP007207.1\|WP_038466659.1\|1575256_1576357_-\|AccI-family-restriction-endonuclease	gnl\|CDD\|286611	pfam09545, RE_AccI, AccI restriction endonuclease. This family includes the AccI (recognizes and cleaves GT^MKAC) restriction endonuclease.	0

>NZ_CP007207.1|WP_052079102.1|1563203_1564325_-|hypothetical-protein
MEKTYFEVNPKLYPIVLIPHDILENFETELSNNEICKELNVNYPKYNEIPKPIEPSRFLRTEKTKTKINSEGGGCILSILIFIIILGIFSITFQSEVGIFFLIVSSFFFFFNGKNPLGSIFETENYYDSKKIDEEKYQILLKDFKEEIIRIDKENNKNKKAYEVEKEKINLLINENRSLINYKYFISYFLPEVSFIKLEKNNNRGKSEIYFLSYLFEKFNNNIYVDVVPAIGKNPFQPDFLLICKETGIHIDIEIDEPYSVDNGKPIHHDRSKDDERDVFFLEINWGVIRFTERQVIENPKECVYLIQNILFSIRNKKKYFEHKVPLCKKWTYEEALLMNNNDYRNTYLPSDMKIKVNYTNNNSSFEMDDLPF
>NZ_CP007207.1|WP_038466638.1|1562612_1563191_-|hypothetical-protein
MSNKEKDFEQLHSDWRNISINQLSFTNNLILTFSSGFFIYIFSDKKIPDFHINTNENFVYTKFAFAFCIIFLLLSIIYGIAILFTRLYDFRITRNILFARSRTNNQLEYIDFSEFTFNERVSALWKILFKKLPFLTREDAKKSINDKEFIKKFEELLKLSKILGTSSWLWTKFQILHLSLSFILYLIFLFLN
>NZ_CP007207.1|WP_038466635.1|1562274_1562595_-|hypothetical-protein
MGNIIASKCRICNFENTFKYGGNRFDFQTNCPVPAINIETGEFENVNYKTENNNPKYKFYSDNELKGDNEGNNTFGNFNLNLNSVNNYCPKCKNFTFDFRIKFFTD
>NZ_CP007207.1|WP_038466632.1|1561289_1562105_-|hypothetical-protein
MAIQRIRDFQKSITKELVLTKDRVEFLIGNANWAEVGRYKEAILRKSISQFLPSNLKLGTGFIIGNDDHINGQEPRTSSQLDIIIYDDNSPVIFREGDFVIVTENSVRGVIEVKSNVTNYSNPQGQNVQDNALNIIIEKFNRLQQFQTFNPIGNHRKKFVGIFSYNYTQNNITAENINDALRNSNGLVNHISLGPNKFIRYWESTIGLQPPTNHNGRSYIKYDIEELSFSYFISNLLHIVSDNELLERYWFSFPIEGTKEVHRINPIIELN
>NZ_CP007207.1|WP_038466629.1|1560890_1561232_+|hypothetical-protein
MTKIVKLISETIFKGFIFQISRFLRFLGVLLPTSPRFAGFSRELALEENLAKRVMEEHRAKATMVFHHLRSGGSMEKIVPKGDFFHRSTAWRGCELRNRLFSTKDKISCGTQT
>NZ_CP007207.1|WP_034098013.1|1560566_1560875_-|helix-turn-helix-transcriptional-regulator
METFGDIIKTERESKGLLLRQVASALEIDQAIISKFERGERKPTKEQVEKFAEFYDLDKNKLITSWLSDQIANTILYEENIGEVLKVAEEKALYLKTIHNGK
>NZ_CP007207.1|WP_038466626.1|1559290_1560577_-|DNA-(cytosine-5-)-methyltransferase
MENKIKVVELFAGVGGFRLGLEGWNNKSASSNYKENFESPYEVVWSNQWEPSTKVQHASMVYETRWDKKSHCNQDISTVEVTEIPDHDLLVGGFPCQDYSVATTLKNSKGLIGKKGVLWWSIHKILSEKENKTKYLFLENVDRLLISPSGQRGRDFAIILKSLNDLGYAVEWRVVNASEYGMPQRRKRIFILAYLKDSTIYNEIKETTSKDWILKDGTLANAFPVQSDDILFPNEFKLKGDIVEISENFNKNGKKGMFENTGIMIDGIVTTIKTKPSYEDKFTILKDIIQNGEVTEEFYIKEEELDKWFYLKGAKKEMRKNAQGFEYNYSEGGMIFPDSLDKPSRTIITGEGGKSASRFKHVIKVDKGYRRLSPVELERLNMFPDNHTKFEGVTDTKRAFFMGNALVVGVIEKIGIALNQKINNEVTV
>NZ_CP007207.1|WP_038466623.1|1557906_1559307_-|DNA-mismatch-repair-protein
MKLPYNPSDKNSIIEYAKKLKGKSLRQVCDPTVLEHSYSGKGNFGQVLEKFYFGYEPNSVAEADFAQIGMELKSSPLKQLKNDEFRSKERLVLNIINYVNVVNQNFENSDFFKKNASILLIFYLHNAGYDILDYLIKLVDEWSFPSTDLEIIKKDWQTINEKIANGKAHELSEGDTFYLGACTKGANALSVRKQPFSEIPAKQRAYSFKQGYVNHIIASIAKENKGIYGKLIPNVQVAKKQTIEEIVISKFKPFYGKTEEEIIKILKIKINTKAKSFYASLTKAILGIELDKEIEEFEKAEIIVKTVRLKENDLPKEDISFPNFKYEEIVNEDWEDSDFKDVLEHKFLFVFFQFENEKLILRKVKFWNMPYLDLIEVEKVWTKTKQIVAKGEIVKEIKTNKKGKEIRFTNFPSKKFSSISHVRPHAKDSSDTFELPKKDKLTKQNEYTKHCFWLNNTYVKNEIYLK
>NZ_CP007207.1|WP_038466620.1|1557211_1557724_-|hypothetical-protein
MRINYNLKRHKLLEVLSTQNLNVQLRKEGCLALGISYEEIYSKLNINAFELLIITSELYENKEIGYHNAYNIEGLYSETLGISAFSNGKYKKAHWNEIISKIKDVTQIVIPVLALIIAIITLTTKLENSELKNKKELNQIKASIEKLENKQNIQGLSVNNNRQNIVSKKN
>NZ_CP007207.1|WP_038466615.1|1556530_1556986_-|hypothetical-protein
MKLKILFISFLIILSCKNNSKSSTEDYDNNSTNYSAEDNRNVDYESDETTEIVDNEVSNNSNIETEKQIDDGNYDASVDYYNPKTGYSATYDLDVDVENGEVVRINFPKGGWLDEDVHPAESRLSPAELNEDGEATMEDENGRTFEVKIKN
>NZ_CP007207.1|WP_052079103.1|1565753_1566251_-|hypothetical-protein
MIAKSYIESTLQELDKLYNQASSQKKAIYFSKLAIIELCGWIEETVDEIVLRHCNRKLKNVENKNYCKEKIIKNNYGFQYLQNIRPMLINLIGLIGVEKLEIELEKTAQITLLKNSLGNLKVSRNEAAHTHLKGITRTYNAPSRTLGDFNRIYIVLEKLDLELRK
>NZ_CP007207.1|WP_038466644.1|1566251_1567349_-|DUF262-domain-containing-protein
MNEINTEEELFQFENFQEAQDDYNENPPSDIVAYNELRSCADLLRMHSENQLEIQPEFQREVVWNKAMKTRLIDSLVKQLPIPSLCISLDYKTQERFVIDGLQRIATIIFFLDSEPKNEWKLAKLDDIDDRISGKSNLYIKKKFPDLFSKVQNTVLPITVLRCDYSKKNHMNYLFTIFHRLNSGGSKLTNQEIRNCIFNGTFNTFLKASVNYDNFKNLFEIDPDKIYRFSNEEFVLRFISFYKNHDNYNGSLSKFLNDFMENNKKADQTAIENFSTIFERTTNLIYNKIMNIGHLPRLSKATTEALFVGIAKNIDHLETETNAELNIRFNNLKNDELFSIDSLKEGLAQKERVINRLNKAILIFA
>NZ_CP007207.1|WP_038466647.1|1567587_1568523_-|P63C-domain-containing-protein
MTKKLIPAVRYKGQIEIGEFKISCAVLDDGQRILVDRSLANALGIKGSGAYWQKKKDLKGAVLPEYISANYLSPFISKEVELKLSIPITYKDLDGSLSEGIPATAIVDICDIWQQADRKGALENKENAKLAAENAYIIFKGFANIGITALVDEATGYQYDRENDELQKILKKYISEELLPWQKRFPDIFYKELFRLNGWDFTVNGIKKRPGVIGTWTKKLIYEELPNGVLEELQKNIPKSSTGNNVIRYHQLLTEDIGSPHLTAQINQIVTLFQLSDNMQHMWQQFEKLRLRQNGQLELPFNFDENGHTIE
>NZ_CP007207.1|WP_131799732.1|1568719_1570558_-|hypothetical-protein
MYRLIIEFKTIHPLRFWSAILIATSLIIIVIRKLSRKKGTPPTTVIAEKETVKQKPATQKENPILATQTKVYTDTLVKNSLEVSEPKPVYIKQIEIKQEAIPKVEKVEVKLKTKPKSEEQLPKAKIETTKAKDEVVFVNFDILKAQTTNSYPIFRFPIKGTVVRSFRLGNTKRRGFKEEPFQKSIERNFGQEFSVLGNARLNTGKETRPFEPDIAIIDKSNITNLRIDIEIDEPYAGTTRQPTHCKGDDVNRDIYFVDRGWIVIRFSEYQVHTQENDCLRFIAETIKSAIPNYSIPKEFVNQASLQTEKLWDIVQAQKWEKVKYREQYLNHTFKSVEEQIETIERDFDEQELKEEKLVKSTLIGEVDNKQSIAFNLKNTHSRDSRIKFYPEPHIYTIDNTPAPSASTIIAKFFPEFDSIYWSNKKAPQLGMSASEVASMWRKKGEKASQDGTFLHEQIENFYLNQEYERTEEFHLFEKFVNENSTINPYRTEWRIFDEYHHIAGTIDLISKNSDGYEMYDWKRSKKVVNAYTGEPVKNNQWQSGVGQLSDIDDTSYNRYCLQQSLYKYILEKNYGMKVSKMFLIVLYPEYENYYKVEVPYLKDKAEYILRTL
>NZ_CP007207.1|WP_038466650.1|1570744_1572238_-|RNA-directed-DNA-polymerase
MKQILELNNTDAKTLFLKEESYSNISLPDYFSFQELLDKLDKELTNKNLSDLRTKSPRESDYVNYKLLSNKDGKFAWRPFQLINPAIYVSLVNTITETTNWNLLKKRFENFQKNKKIECHSLPAISETIDKTNKSAQILNWWQMIEQKSIGLALDFKYVLHSDIADCYSSIYTHSIPWAIHTKEKSKINRKNSLLGNAIDNHLQDMSYGQTNGIPQGSVLMDFIAEIVLGYVDLLLTEQLKEKKIDDYHILRYRDDYRIFTNNSFEAEQITKELSEILSSIGLKLNAEKTMTSDDIIKSSIKPDKRYWISNKTITGNKQKWLIKIYLLSEQFPNSGTIDTQMRDFLTVLEKSKKEDHNLISLISIVTEIALRNPRVVPTCIAILSTFISKIKGSKNQMELVEKIRKKFREVPNSSFIMIWFQRLNLKINKAENYDELLCKKVLDKDIKIWNSEWLNPKLKKIINETPITKETTIAKTKKKISKSEIEKILKSASYYE
>NZ_CP007207.1|WP_038466653.1|1572565_1573477_-|hypothetical-protein
MENKGINKRQGIFNEFSENFSKVMNNPHVEKINIDYYICPLCRNSFTEKDLDQALQNPLTIEDVPPKKLKGKPLLLTCKKCNNINGSVYDSELGKWFKAFCALEGNGDLEFKMKIDSSRPFNVKLTRDIEKQQININSNNKNPYAKQNVSNMHNNGKAEVNYIFDFGDDKKINDGLLRFSYLYAFYFFGYSYIFSAGGKYLNDYISFNKNTELKPLVISENLDNYEQGIYKISFPLNITSFLVVFTFGSEIKKNVGIIIPSPKIEHLNNFKSINRQKIGPLKFQKILKQEINNRPFVCYEVWN
>NZ_CP007207.1|WP_038466656.1|1573637_1575257_-|Eco57I-restriction-modification-methylase-domain-containing-protein
MIVTEKHIINNSIENNYSKSISIEHRKKFAQFFTPFPIADAMAKWLLGNDQLKDVLEPAFGLGVFSRAILNHKKEINIKGFEVDETIFNNAKQYFQDIENVNLLLQDYMYNDWKNKYDGIICNPPYFKFHDYDNKNILKEIETNLKCKLNGFTNLYTLFLLKSIHQLSKNGRCAYIIPSEFLNSDYGKLVKTYLIKSKTLRHIIVIDFEENVFDDALTTASIILCANDNLTDKVQFSNIQSLQDLSKIDEIITKYPNFSETEQTYSFTELNPDIKWKAYYQKQNSIKFKNLVPFSTYAKVVRGIATGSNEYFTFNFSKAKEFNIDEQYLLPCICSAKDAKTSFFTKQDFEELKKSDKSIFLFNALNPNDKNINSYIQKGEEEEINKRFLTASRKPWYSLENRKPAPIWVSVFNRSGLRFIRNEANISNLTSYHCIYPKQTSLFSEINIDLLFAYLLTDTAKQIFDDNSRQYGNGLQKFEPNDLNKGMMLDLGLLDKQTSNEILKLYKEYKSLILDNKNGDEIINKIDEILTDKYSEKKH
>NZ_CP007207.1|WP_038466659.1|1575256_1576357_-|AccI-family-restriction-endonuclease
MNYYDRIRELTKNVPIELVDFEQPRDMARTPTQASSNFITNKEQGDWAENLVTRAINENSKNFVAVKYGKSDDLVAGENGFDTFYQDFQTELDTIGKRPDLLIFKKSDFDNSLGFDISQIPHHQITDYVKNAIAGIEVRSSAFLIDKYEEAMQLRTKRFTEIALQTRDTILAEFLDVLEHPNRTKYITLLNTLTPETISIFDFKVPGWRSNERLLEVNNLFKRLKVAIKEIQKRDYLSITPKVEDIKVVYKWIETFNVPHFYFQVFFDKVFGISFEQILSIISNSDNEGVIFSVEKDVQNQNKTTIKINSKTGYPIASKVDEPTHESIRKEMDRGRLLFYVTFKGGTAYLDLDNLRTILGIEEAEF
>NZ_CP007207.1|WP_038466662.1|1576600_1577305_-|RloB-domain-containing-protein
MRMKDKKAEQALDKENHRAQLKAKRRTETSIERAEPVLNKKPTILIVCEGKNTEPSYFNQFRLTSATIEPVGEGFNTISLVNRAIQIANQTSYEQVWCVFDKDDFDNVDFNNAISLADANGFGIAYSNQAFEYWVLLHFNDHQGGGMHRDEYNDKLNKSLKEFNISYDGKKSKIITEEIFELLDGIDQKIGKERKILAIERAEKIYDRLDHNNPANEESSTTVFRLVRELLKYL
>NZ_CP007207.1|WP_038466664.1|1577306_1578614_-|ATP-binding-protein
MLLQFSVKNFKTFKEKTSLNLVASNYDKDTREFDNVYNDNKFDIRLLKSAVIYGANASGKSKFFEALNFMKYFVISSSKDSQKGDEIDTEPFKLSSETENSPSEFEVVFTHNDVMFRYGFEVDKKNVISEWLYYKPKTKEIELFYRDGDNFETHTRNFTKGKTVIKEGLVRDNALLLSVSAQFNDKTSIEVMDWFKELKTISGLNESGYRGFTLSKTDDPNQKVKILNLLKAADLGIQDINLEKIDLANLPKDMPKELKDRITKEVIDDKKEILSDVLTSHKKFDSNKKAIDFVNFSLFDDESSGTKKFFALTGPILDVIENGYTLIVDELDSKLHPNLVCKIVSLFNSKELNKKNAQLIFNTHDTNLLSSGLFRRDQIWFTDKNKFGEAKLYSLADFKSDEVRKTESFEENYIKGKYGAIPYLGFFNNLNNILP

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Crispr_ID: NZ_CP007207_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007207_8

1684880-1685026

Orphan

Consensus_repeat	Method
AAAGCTCGAACTGACTGGGGTTTTGATTGCTTTGCAAAAAACAAAACTCCGGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007207_8

>merge|NZ_CP007207|8|1684880-1685026|CRISPRCasFinder
AAAGCTCGAACTGACTGGGGTTTTGATTGCTTTGCAAAAAACAAAACTCCGGTACCCGAGAGCAAAGCAAACAAAACTCCGGTACCCGAGAGCAAAGCTCGAACTGACTGGGGTTTTGTTTGCTTTGCAAAAAACAAAACTCCGGTA

>NZ_CP007207|8|8|1684880-1685026|CRISPRCasFinder
AAAGCTCGAACTGACTGGGGTTTTGATTGCTTTGCAAAAAACAAAACTCCGGTA	CCCGAGAGCAAAGCAAACAAAACTCCGGTACCCGAGAGC
AAAGCTCGAACTGACTGGGGTTTTGTTTGCTTTGCAAAAAACAAAACTCCGGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007207.1\|WP_011964148.1\|1685096_1685960_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236413
NZ_CP007207.1\|WP_052079108.1\|1686099_1686672_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007207.1\|WP_011964140.1\|1695381_1696011_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|224766
NZ_CP007207.1\|WP_011964154.1\|1678067_1678790_+\|cell-division-protein-FtsQ	unknown	unknown	unknown
NZ_CP007207.1\|WP_034098853.1\|1674246_1675533_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|274232
NZ_CP007207.1\|WP_011964146.1\|1686758_1688894_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP007207.1\|WP_071948513.1\|1693758_1693896_-\|DUF2256-domain-containing-protein	unknown	unknown	gnl\|CDD\|378353
NZ_CP007207.1\|WP_034098842.1\|1682550_1683000_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP007207.1\|WP_034098851.1\|1675574_1676678_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP007207.1\|WP_011964149.1\|1683977_1684637_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP007207.1\|WP_034098846.1\|1678797_1680192_+\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|273483
NZ_CP007207.1\|WP_034098819.1\|1690932_1692225_-\|DASH-family-cryptochrome	unknown	unknown	gnl\|CDD\|274288
NZ_CP007207.1\|WP_034098821.1\|1689487_1690915_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP007207.1\|WP_034098817.1\|1693861_1695370_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP007207.1\|WP_034098844.1\|1680238_1682221_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP007207.1\|WP_034098855.1\|1672836_1674168_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|223842
NZ_CP007207.1\|WP_011964145.1\|1689123_1689390_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP007207.1\|WP_011964150.1\|1683170_1683989_+\|zinc-dependent-peptidase	unknown	unknown	gnl\|CDD\|380913
NZ_CP007207.1\|WP_034098849.1\|1676731_1678078_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP007207.1\|WP_034098833.1\|1692221_1693757_-\|cryptochrome/photolyase-family-protein	unknown	unknown	gnl\|CDD\|225588

Protein	Function_ID	Function_description	E-value
NZ_CP007207.1\|WP_011964148.1\|1685096_1685960_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	1.10541e-93
NZ_CP007207.1\|WP_011964140.1\|1695381_1696011_-\|flavin-reductase	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.61691e-13
NZ_CP007207.1\|WP_034098853.1\|1674246_1675533_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	5.67524e-80
NZ_CP007207.1\|WP_011964146.1\|1686758_1688894_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP007207.1\|WP_071948513.1\|1693758_1693896_-\|DUF2256-domain-containing-protein	gnl\|CDD\|378353	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.	6.25742e-17
NZ_CP007207.1\|WP_034098842.1\|1682550_1683000_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	1.71438e-44
NZ_CP007207.1\|WP_034098851.1\|1675574_1676678_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	5.26419e-154
NZ_CP007207.1\|WP_011964149.1\|1683977_1684637_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	1.95145e-121
NZ_CP007207.1\|WP_034098846.1\|1678797_1680192_+\|cell-division-protein-FtsA	gnl\|CDD\|273483	TIGR01174, Cell_division_protein_FtsA, cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. [Cellular processes, Cell division].	1.69166e-113
NZ_CP007207.1\|WP_034098819.1\|1690932_1692225_-\|DASH-family-cryptochrome	gnl\|CDD\|274288	TIGR02765, deoxyribodipyrimidine_photolyase, cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP007207.1\|WP_034098821.1\|1689487_1690915_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.33335e-99
NZ_CP007207.1\|WP_034098817.1\|1693861_1695370_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	5.47182e-92
NZ_CP007207.1\|WP_034098844.1\|1680238_1682221_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	1.95152e-156
NZ_CP007207.1\|WP_034098855.1\|1672836_1674168_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|223842	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].	2.18246e-153
NZ_CP007207.1\|WP_011964145.1\|1689123_1689390_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.96241e-40
NZ_CP007207.1\|WP_011964150.1\|1683170_1683989_+\|zinc-dependent-peptidase	gnl\|CDD\|380913	cd20170, Peptidase_M90-like, uncharacterized M90 peptidase family-like proteins. This subfamily contains uncharacterized M90 peptidase-like domains, similar to the Mlc Titration Factor A (MtfA) peptidase from Escherichia coli, also known as the YeeI gene product, which is involved in the control of the glucose-phosphotransferase sensory and regulatory system by inactivation of the repressor Mlc (making large colonies). E. coli MtfA has been shown to have aminopeptidase activity with the presence of a single zinc ion in the active site ligated by two histidines in an HEXXH motif. MtfA is related to the catalytic domain of the anthrax lethal factor and the Mop protein involved in the virulence of Vibrio cholerae; although sequence similarity is low, conservation is observed in the overall structure as well as in the residues around the active site.	1.13315e-91
NZ_CP007207.1\|WP_034098849.1\|1676731_1678078_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP007207.1\|WP_034098833.1\|1692221_1693757_-\|cryptochrome/photolyase-family-protein	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	0

>NZ_CP007207.1|WP_011964149.1|1683977_1684637_-|ribulose-phosphate-3-epimerase
MNNTLIAPSVLAADFANLQRDIEMINNSQADWFHIDVMDGHFVPNISYGMPVIEAIKKHATKPLDVHLMIEKPERYIEEFAKIGADIITVHYESTVHLHRTLTQIKNAGCKAGVVLNLTTPVSVLEDILSECYMVLIMSINPGFGGQKFEEITYNKVRKLRKMITDQGLHTLIEIDGGVTDKNAKQLVEAGANVLVAGSYVFKAQSPAQAIIDLKNLTR
>NZ_CP007207.1|WP_011964150.1|1683170_1683989_+|zinc-dependent-peptidase
MFVIYLSLVIIIGIVYLFKIIVQPIYILIYKKPLTLRFCLFSKKINPHYKDILTHHFPFYKKLKPKDQNHFDQRVLNFIEDIQFISRDDIEITFEMKLLIASTSIMLTFGMQEYLHTVVRTIIVYPSSFYSTTNQNMHIGEFNPKLKVVVFSWEDFYKGIKLNDDNLNLGIHEFSHVLLFESLKKNKYDAVANPVFLDCYNAIIIDLKKPEFIEKLVASHYFRDYAFVNSVEFIAVILEQFFETPEKFKELFPELFYKVKMMINYNDNSLSS
>NZ_CP007207.1|WP_034098842.1|1682550_1683000_+|GatB/YqeY-domain-containing-protein
MSLSTHIMDEMKTAMRAKDTVALEALRAIKSEILLAQTATGTKEDITEADEIKILQKLVKMRKDSATIFAAQNRPDLAEPELAQIVVIEKFLPAQLSEQEVEAIIAKIIAETGASGIASMGKVMGLASAQLGGQAEGKTISSIVKKLLV
>NZ_CP007207.1|WP_034098844.1|1680238_1682221_+|cell-division-protein-FtsZ
MESNSEFGSISFDLPKNQSNVIKVIGVGGGGSNAINHMFKQGIKGVDFIVCNTDSQALDNSVVPNKIQLGVNLTEGLGAGANPEVGQQSAIESIAEIEKMLDGNTKMVFITAGMGGGTGTGAAPVIAQLARERDILTVGIVTIPFQFEGKVRIEQALLGVEKLRKQVDSLIVINNNKLREVYGNLGFKAGFSKADEVLATASRGIAEVITHHYTQNIDLKDAKTVLSNSGTAIMGSATAEGENRAKEAIVSALDSPLLNDNKIAGAKNVLLLIVSGTNEITIDEIGEINDYIQAEAGHSANIIMGVGEEEELGDKIAVTIIATGFCVEQQAEIVNIEPKKIIHALEDDQKIVRDLTQKYQAQGFDFSSNVITEPLKTLETPIAEEKIVFALDEELPNPVEAYFKMDLVPTTELIKNLDVTFEVVSSKAIDVNDFYFTSPPVKDTIDSELVKQIEVVDPQFLIKEQEQIAFTFDLPIQKTTQTANTDRLTFDLTTEIKDIKVNQAVEFVPMTEVTQNGVIKHSLEAYMEVENQLFEAKKAENVVVETIPTELNITMKQVETPKYSTPNTANEISPLEMSIEDSLRMRSEERRRKMKEFNYKFHNNASKVDEFEKEPAYKRMGIDISNNTIDNSRSRISLGTDGNDEIQLRSNNSFLHDNVD
>NZ_CP007207.1|WP_034098846.1|1678797_1680192_+|cell-division-protein-FtsA
MERDNIAVGLDIGTTKIVAMIGKKNEYGKLEILGVGKSKSLGVARGVVNNITQTIQSIQEAISLAEADSGYKIKDVVVGIAGQHIRSIQHSDYISRPNPEEVISEIDIDVLINQVQKLAMLPGEEIIHVLPQEYKIDGQSEIKEPIGMYGGRLESSFHVVVGQASSIRNVGRCIKSSGLDLSGLTLEPLASADAVLSQEEKEAGVALIDIGGGTTDLAIFKDGIIRHTAVVPFGGNVITEDIKEGCSIIEKQAELLKTKFGSAWPGENKDNEIVSIPGLRGRDPKEISLKNLSKIIHARVVEIIEQVYTEIKIYGHEDPRKKLIAGIVLTGGGSQLKHIKQLVEYITGMDTRIGYPNEHLAGNSSEEISSPLYATAVGLVMNSIRNNTVSAVPHENFIAEPVLIPKPIITEKIEIKKEEDAIEETKTEPKPETRKDSKSSEKMIRKSFFDKYIDKIKDFLDNAE
>NZ_CP007207.1|WP_011964154.1|1678067_1678790_+|cell-division-protein-FtsQ
MKNNLILNIQLVAIFVLVGFLYSFTSKRNEHRKISKPTIEFLNSESPFVTHEMVNNLLKDNFGGTFSIQKDRVNLKNIEQTINKHNLIEKSEVFLSVDGELEAVIKQKTPIARVFNGNTSFYIDYKGGRMPLSSNFTARVPLVYGDFNNRYDKDFVGLLQCIYNDDFLKKNIIGIRVLPDGSVIMKNRDYSYDIIFGRTICMERKFNNYKAFFQKAVQDTLIKSYKKINLKFTKQVVCTK
>NZ_CP007207.1|WP_034098849.1|1676731_1678078_+|UDP-N-acetylmuramate--L-alanine-ligase
MNLNQIHNVYFIGIGGIGMSALARYFKFIGKNVSGYDKTPSILTSELIESGIAIHFEDNIDLIPKDYFVENTLVIITPAVPKSHSEWNYFLEREYHVKKRAEVLGIITKDTFCLAVAGTHGKTTTSSILGHILYESGADVTAFIGGIVENYNSNLIGSGKTVTVVEADEFDRSFLHLYPNIACVTSMDADHLDIYGDDAAIKASFKEFADKVEDKNKLFVINGLPLKGITVGANDDSQFVAHNIRIENGWYIFDVKTPTENIKDLKFGLPGKHNLTNALLALAMARTFGTPTESIAKALASFKGVKRRFSFQIRKPKFVYIDDYAHHPTEINAVHQAVRELYPNEKVLAVFQPHLFSRTKDFANDFAKSLSQFDEILLLDIYPARELPIEGITSGWLLDKVENKNKKLVHKNELIPLLKKSDATVIVTIGAGDIGEMVVNIKKELDEK
>NZ_CP007207.1|WP_034098851.1|1675574_1676678_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MEQYKFILSGGGTGGHIYPAIAIANELKSRFPNCKILFVGAKDKMEMQKVPQAGYDIKGLSIAGLQRKITLQNAMFPFKLLSSLVKSFGIVQQFKPDVVIGTGGFASGAVLKVASILGIATVIQEQNSYPGITNKLLSKKANKICVAYENLEQFFPKDKMILTGNPVRQDLISVDGKRNEAIDYFKLDANKKTILILGGSLGARRINQLIAKEIDWLLSQNVQIIWQCGKLYFEDYKHFSGKENVQVLSFIDRMDLVYAAADIVISRSGASSVSELAIVGKPVIFIPSPNVAEDHQTKNAQAIVNKQGAILLKESQLDSEFKFVFESLLNDKAKQEDLSKNIKQLALPNATKDIVDEIIKLVESQKS
>NZ_CP007207.1|WP_034098853.1|1674246_1675533_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MKQLLHNLKGDKVIWSFVALLALFSFIPVYSASSNLAYLHHGTGNTFVYLLKHFMHLIMGFVILYQVQKVPYHYFRSLSRLLLPFAWLLLVYTLLKGTMIEGANASRWIQVPFLGITFQPSAFASMALLIFVARYLSKTAIEEMTFQKSLLELWAPVFFTLMLILPANFSTAALIFSMVLMLTFIGKYPIKNIGIIIGLGILSFAFFILVVKAFPNAFPNRVDTWMSRIENFTSDKPGEDDYQIEKAKTAIATGGIYGLGPGKSIQKNFLPQSSSDFIFAIIIEEFGLLGGFAIMFLYIMLFIRFIIASYKAPTLFGKLLVAGLGFPIIFQAFINMGVAVELLPTTGQTLPLISSGGTSIWMTCAALGIIINVTKKEEEITEENIEKQKRDDALQKLIDKQLVDDSQVEDYTIEDHTNNPMNAVLNKK
>NZ_CP007207.1|WP_034098855.1|1672836_1674168_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MRLVILGGGESGVGTAILGKKKGYDVFVSDFGKIKNNYKEILILNKIKFEDEQHTEDLILNADVVMKSPGIPDKSPIVKKLKEKNIPVISEIEFTAPFTNAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIGKSFAWQVSEDNYDFYVLELSSFQLDGIQKYKPHIAIITNISPDHLDRYDYQYEKYIESKFRITMNQTEEDYLIYDADDQAINNWLKNNKTKAQLVPFSLTKQFEFGAYEANNNININTNNDPFVMQTSELSLEGKHNVKNALAATSVAQLLKIRKATIRESLADFQGVEHRLEKVLKIQNVQYINDSKATNVNATFYALDSMTSPTIWIVGGVDKGNDYSELMELVNKNVKTIICLGVDNKKIIDAFSNVVDELIEVSTMTDAVRQAYKMAEKGDTVLLSPACASFDLFENYEDRGRQFKQAVQNL
>NZ_CP007207.1|WP_011964148.1|1685096_1685960_-|sigma-70-family-RNA-polymerase-sigma-factor
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERPPSAEEIAKELDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIIESLRTEIERSLETLTPREADVVRLYFGLADQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
>NZ_CP007207.1|WP_052079108.1|1686099_1686672_+|hypothetical-protein
MKNILQGTKMLVMFLFFIVYNVEAQQIVKDSVKSCLVCPVFYVGKKQAKSNFFLNLSSLKLIYYVEYFNTNRSQLKGGFEFYLNPNARNDNRFFFGLGYGLVNSFGYIKGLPDYHISYNKNNGYFFKFGGSDRNLYVLTGISFLNAIDLGVGYSVSMGENRLPEIRGFTVGFTIRMSANDAVYEKLKIGF
>NZ_CP007207.1|WP_011964146.1|1686758_1688894_-|polyribonucleotide-nucleotidyltransferase
MIPQLFVESIDLGDGRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEEVMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSIAMVEGEMKEISEAEMLEAIKFAHEHIKVQIAAQERLAAAFGKKEVRTYEKEKSDDAIYAKVKEAAYDKIYNIAKVGSAKQERTAAFDAVKEEVKALFTEEELAENGDLVSKYFYKTNKEAVRNVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSQQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIPADCPYTIRVVSEVLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVLSDILGDEDHLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTETLATPKVDVKAYAPKIIMRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEMGVVEILGTDPAGIEAVLAKIESITFKPQIGEAYEVKVIKMLDFGAVVEYTAVPGNEVLLHVSELAWERTENVTDVVNMGDVFMVKYLGLDPKTRKEKVSRKALLPRPPREEKKE
>NZ_CP007207.1|WP_011964145.1|1689123_1689390_-|30S-ribosomal-protein-S15
MYLTKEIKEEIFAKHGEKTNTGKAEAQIALFTFRISHLTEHLKKNRHDYNTERSLVLLVGKRRSLLDYLKKKEINRYREIIKELGIRK
>NZ_CP007207.1|WP_034098821.1|1689487_1690915_-|SDR-family-oxidoreductase
MKILLTGANGYVGKRLLPELLEQGHEVVCSVRDKTRLGLDAITLARVSIWEVDFLNEVNYTNCPKEIDIAYFLIHSMASSINSFDKMESIVAQNFNKYSSHINIKQVIYLSGIVNDPNLSKHMLSRENVEKILNSGQHQLTTLKAGIIVGSGSSSFEIIRDLCEKLPLMIAPKWVLTKTQPIAIRDVIQYLIGVQNKQECLNKSFDIGGPNIITYKQMMQLYAKTRGIKLAIWTIPLMTPKLSSYWLYFVTSTSYKLAMNLVDSMKVEVVCSDNKLQKILNIKPISYVDAIKLAFEKIEQNLVISSWKDSLSSSRFKKKLSNYIQVPNFGCLKVSKQIQITNPEQVLQNIWTIGGNKGWYYGNWMWQFRGIIDKLFGGVGLRRGRTSPTHLDNGDSLDFWRVLLADKQEKRLLLFAEMRLPGEAWLEFRIDENNILHQIATFRPIGILGRMYWYSMVPFHFFIFDGMIKNIAKAK
>NZ_CP007207.1|WP_034098819.1|1690932_1692225_-|DASH-family-cryptochrome
MIKTAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLESLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEKINSPKITTLSLPTLEDLGLKCKTIDSRAAIQFKGGETEAINRLNYYFFQTNSISNYKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKKYELQFGANDSSYWLIFELLWRDFFRFMFKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTGFMSNRGRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGHRYFNIEKQASDYDKNKEFRELWLK
>NZ_CP007207.1|WP_034098833.1|1692221_1693757_-|cryptochrome/photolyase-family-protein
MLKTLRLILGDQLNINHSWFQTNDDSITYVIMEIRSETDYATHHIQKIAGFFSAMRNFASELKEKKHNSIYFHLNDTNNLQAFDKNLQQLINKEHYTHFEYQLPDEYRLDELLKNFCQTLSISTSVADSEHFMSTREELGNFFDGKKTFLMESFYHMMRKKHNVLMQGNKPLTGKWNYDGENRKKLPKNHKPTSPLGFNNDVSEIVAEIHKTNIKTIGNIDAKNFVWPTTRTQSLKLLDFFVTECLTLFGSYQDAMTPNQWSLYHSRISFSMNVKLISPLEVINRAIQEWESRPDQIAYNQLEGFVRQIIGWREYMRGIYWNKMPQYATMNYFENQNKLPQWFWTGKTKMNCLKDTINQSLNFAYAHHIQRLMITGNFALLAGVNPDEVDAWYLGIYIDAIQWVEITNTRGMSQFADGGIVGTKPYVSAASYIDKMSHYCGSCFYKKSIKTGDKACPFNSLYWNFYDKNQDKLSKNPRIGMMYNMWQKMKPDDKVALLQQADYYLKNINKL
>NZ_CP007207.1|WP_071948513.1|1693758_1693896_-|DUF2256-domain-containing-protein
MRGIKKQNLPNKICLVCNKPFAWRKKWEKVWDEVKYCSDKCRSNK
>NZ_CP007207.1|WP_034098817.1|1693861_1695370_-|deoxyribodipyrimidine-photo-lyase
MEKKVVNIVWFKRDLRFTDNEALFHAHHSGLPLLLIYVFEPSVMNYDDSDVRHWRFVYESLLDMQLKLDLVASKIYFFHNESKIIFSELIKIFNVQTIFSHQEIGNKITFDRDIEMQAFFNKNNIIWKEFQLHGVIRKLKSRQNWDKKWEDVMRASPRIIDLKDLKIEILSDSFYQEFKGEILNPEITTHNKNFQQGGENFAWRYLDSFVKKRYVNYSKHISKPLLSRKGCSRLSPYLTYGNISMRAIYQYTNQHYETSKNKRAILNFVSRLHWHCHFMQKFEDECTMEFENANRAYDVLIKPKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFRMRAMVVSFFTFNLWQDWRELHFLARQFLDYEPGIHYPQIQMQSGTTGINTIRIYNPIKNSEEHDPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTLIVNIDQTRKYASDIVWSFRKKDEVKVEGKRILQKHVTNPNKPKNERHKKTKPTQ
>NZ_CP007207.1|WP_011964140.1|1695381_1696011_-|flavin-reductase
MQKHISSTEIMNMEKQERVHFINSLGGFKSVSLIGTTNNDRQTNLAVFSSIFHIGANPALIAVVFRPSPPDRDTLKNILETGFYTINHINEKIYKQAHQTSARYDANISEFDATGLQPEYKNNFKAPFVKESNIQLGVEFREKIALTINNTIMIIGEIKDVYFPENCLLKDGFLDLEKANTITCSGLDSYHKTIRLNRLSYAKPDKEIT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007207_6	6.1\|1553211\|56\|NZ_CP007207\|CRISPRCasFinder	1553211-1553266	56	NZ_CP007207.1	1539902-1539957	0	1.0
NZ_CP007207_6	6.1\|1553211\|56\|NZ_CP007207\|CRISPRCasFinder	1553211-1553266	56	NZ_CP007207.1	1564806-1564861	0	1.0
NZ_CP007207_7	7.1\|1565415\|56\|NZ_CP007207\|CRISPRCasFinder	1565415-1565470	56	NZ_CP007207.1	1539902-1539957	0	1.0
NZ_CP007207_7	7.1\|1565415\|56\|NZ_CP007207\|CRISPRCasFinder	1565415-1565470	56	NZ_CP007207.1	1564806-1564861	0	1.0
NZ_CP007207_5	5.3\|1491102\|17\|NZ_CP007207\|CRISPRCasFinder	1491102-1491118	17	NZ_CP007207.1	2215795-2215811	1	0.941

1. spacer 6.1|1553211|56|NZ_CP007207|CRISPRCasFinder matches to position: 1539902-1539957, mismatch: 0, identity: 1.0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

2. spacer 6.1|1553211|56|NZ_CP007207|CRISPRCasFinder matches to position: 1564806-1564861, mismatch: 0, identity: 1.0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

3. spacer 7.1|1565415|56|NZ_CP007207|CRISPRCasFinder matches to position: 1539902-1539957, mismatch: 0, identity: 1.0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

4. spacer 7.1|1565415|56|NZ_CP007207|CRISPRCasFinder matches to position: 1564806-1564861, mismatch: 0, identity: 1.0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

5. spacer 5.3|1491102|17|NZ_CP007207|CRISPRCasFinder matches to position: 2215795-2215811, mismatch: 1, identity: 0.941

gttagtaatatcgtgaa	CRISPR spacer
gttagtaatatcgagaa	Protospacer
************* ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

667990 : 679293

Tupanvirus(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034101289.1\|667990_670438_+	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	2.1e-17	31.3
WP_011963429.1\|670441_671422_+	SDR family oxidoreductase	A0A2K9L0I7	Tupanvirus	2.7e-85	50.9
WP_011963428.1\|671432_672704_+	nucleotide sugar dehydrogenase	A7IWZ0	Paramecium_bursaria_Chlorella_virus	6.2e-21	26.4
WP_011963427.1\|672735_674112_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	4.7e-59	31.6
WP_011963426.1\|674117_675164_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.3e-85	50.5
WP_038466088.1\|675232_676105_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-100	60.6
WP_038466091.1\|676119_677145_+	polysaccharide biosynthesis protein	K7Y9E1	Megavirus	4.0e-47	39.9
WP_038466094.1\|677149_678238_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	3.5e-25	28.4
WP_038466097.1\|678237_679293_+	aminotransferase class V-fold PLP-dependent enzyme	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	2.2e-11	24.6

DBSCAN-SWA_2

1401844 : 1475007

Bacillus_phage(18.18%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011963018.1\|1401844_1402486_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011963019.1\|1402533_1403229_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_011963020.1\|1403894_1405775_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.0e-145	49.8
WP_038466399.1\|1406232_1408536_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_038466402.1\|1408983_1409775_-	hypothetical protein	NA	NA	NA	NA
WP_038466405.1\|1409831_1410353_-	hypothetical protein	NA	NA	NA	NA
WP_011963024.1\|1410515_1412849_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	1.2e-123	38.9
WP_052079095.1\|1412993_1413863_-	hypothetical protein	NA	NA	NA	NA
WP_038466408.1\|1413873_1414503_-	hypothetical protein	NA	NA	NA	NA
WP_038466411.1\|1414503_1415688_-	hypothetical protein	NA	NA	NA	NA
WP_038466414.1\|1415691_1417053_-	hypothetical protein	NA	NA	NA	NA
WP_011963025.1\|1417233_1417854_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	6.5e-08	27.2
WP_011963026.1\|1417964_1420025_+	oligopeptidase B	NA	NA	NA	NA
WP_034098105.1\|1420105_1421146_+	cysteine synthase family protein	A0A1X9I5K7	Streptococcus_phage	1.4e-50	37.9
WP_011963028.1\|1421238_1422033_-	HNH endonuclease	A0A0S2SY41	Pseudomonas_phage	7.8e-06	31.5
WP_117386928.1\|1422072_1423168_-	peptide chain release factor 2	NA	NA	NA	NA
WP_034098087.1\|1423333_1424359_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011963031.1\|1424526_1424847_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_034098089.1\|1425178_1426867_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.4e-83	32.4
WP_038466418.1\|1427030_1427213_+	hypothetical protein	NA	NA	NA	NA
WP_011963034.1\|1427212_1427770_+	hypothetical protein	NA	NA	NA	NA
WP_011963035.1\|1427812_1428205_+	hypothetical protein	NA	NA	NA	NA
WP_034098091.1\|1428332_1432676_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_034098110.1\|1432749_1433880_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011963038.1\|1434234_1434816_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_034098093.1\|1435042_1436971_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_011963040.1\|1437274_1438702_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011963041.1\|1439001_1439820_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_052079096.1\|1439866_1441144_+	hypothetical protein	NA	NA	NA	NA
WP_034098095.1\|1441177_1441873_+	RNA pseudouridine synthase	NA	NA	NA	NA
WP_034098114.1\|1441899_1443228_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011963045.1\|1443245_1443974_+	hypothetical protein	NA	NA	NA	NA
WP_034098098.1\|1444297_1446169_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_052079097.1\|1446516_1449435_-	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	1.3e-05	22.5
WP_011963048.1\|1449965_1450310_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_011963049.1\|1450484_1450682_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_071948519.1\|1450791_1451340_-	translation initiation factor IF-3	NA	NA	NA	NA
WP_034098102.1\|1451363_1453310_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.4e-125	38.3
WP_038466422.1\|1459794_1459986_-\|transposase	transposase	NA	NA	NA	NA
WP_038466425.1\|1461393_1461573_-	hypothetical protein	NA	NA	NA	NA
WP_038466428.1\|1461933_1462650_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_038466431.1\|1462646_1463897_-	hypothetical protein	NA	NA	NA	NA
WP_038466434.1\|1463961_1464174_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_038466437.1\|1465074_1466277_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.3e-46	46.5
WP_038467163.1\|1466584_1467538_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_038467167.1\|1467775_1469305_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_034098120.1\|1469396_1470599_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.9e-46	46.5
WP_038466443.1\|1470899_1471880_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0A8WHZ5	Clostridium_phage	3.5e-16	27.8
WP_038467170.1\|1471876_1472725_-	EcoRV family type II restriction endonuclease	NA	NA	NA	NA
WP_038466449.1\|1473423_1475007_+\|transposase	IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1481126 : 1546800

uncultured_virus(25.0%)

integrase,transposase

attL 1487711:1487770|attR 1527847:1528387

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016361990.1\|1481126_1482329_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.9e-46	46.5
WP_038466466.1\|1482441_1482924_-	hypothetical protein	NA	NA	NA	NA
WP_038466470.1\|1482935_1484120_-	C10 family peptidase	NA	NA	NA	NA
WP_052079098.1\|1484507_1485590_-	hypothetical protein	NA	NA	NA	NA
WP_106388619.1\|1485893_1486808_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_038466475.1\|1486750_1487134_-	DNA-binding protein	NA	NA	NA	NA
WP_038466478.1\|1487341_1487767_-	hypothetical protein	NA	NA	NA	NA
1487711:1487770	attL	NA	NA	NA	NA
WP_016361990.1\|1488366_1489569_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.9e-46	46.5
WP_038467178.1\|1489889_1490579_-	hypothetical protein	NA	NA	NA	NA
WP_080731695.1\|1491191_1493669_-	S8 family serine peptidase	A0A2K9L1P3	Tupanvirus	2.3e-11	33.9
WP_038466486.1\|1493665_1494070_-	hypothetical protein	NA	NA	NA	NA
WP_038466489.1\|1496066_1496567_-	hypothetical protein	NA	NA	NA	NA
WP_038466492.1\|1497406_1498624_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.2e-13	31.0
WP_038466495.1\|1498894_1499782_+	hypothetical protein	NA	NA	NA	NA
WP_034098978.1\|1499926_1500208_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162179067.1\|1500794_1501628_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_038466501.1\|1503918_1506021_+	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	4.6e-29	25.2
WP_074460308.1\|1506017_1507289_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_038466504.1\|1507312_1512175_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_038466509.1\|1512181_1515475_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.6e-55	25.1
WP_038466512.1\|1515565_1516021_+	hypothetical protein	NA	NA	NA	NA
WP_038466515.1\|1516027_1516210_+	hypothetical protein	NA	NA	NA	NA
WP_038466518.1\|1516199_1518629_+	hypothetical protein	NA	NA	NA	NA
WP_158409052.1\|1518817_1518979_-	hypothetical protein	NA	NA	NA	NA
WP_086440623.1\|1519045_1519219_-	hypothetical protein	A0A2H4J2N9	uncultured_Caudovirales_phage	3.0e-11	64.3
WP_038466521.1\|1519399_1519747_-	hypothetical protein	NA	NA	NA	NA
WP_038466524.1\|1519743_1520544_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_123960885.1\|1520990_1521212_-	hypothetical protein	NA	NA	NA	NA
WP_038466526.1\|1522297_1522540_-	hypothetical protein	NA	NA	NA	NA
WP_038466529.1\|1522529_1522793_-	hypothetical protein	NA	NA	NA	NA
WP_016361983.1\|1522926_1523238_+\|transposase	transposase	NA	NA	NA	NA
WP_106407974.1\|1523246_1524134_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	6.0e-15	24.9
WP_038466532.1\|1525159_1525834_-	hypothetical protein	NA	NA	NA	NA
WP_038466535.1\|1528521_1529175_-	HAD family hydrolase	NA	NA	NA	NA
1527847:1528387	attR	NA	NA	NA	NA
WP_038466538.1\|1529351_1529732_-	hypothetical protein	NA	NA	NA	NA
WP_038466541.1\|1530280_1532068_-	hypothetical protein	NA	NA	NA	NA
WP_038466544.1\|1532256_1532745_-	hypothetical protein	NA	NA	NA	NA
WP_038466547.1\|1532748_1533930_-	hypothetical protein	NA	NA	NA	NA
WP_038466550.1\|1534167_1534677_-	hypothetical protein	NA	NA	NA	NA
WP_038466553.1\|1534669_1535113_-	hypothetical protein	NA	NA	NA	NA
WP_038466556.1\|1535209_1536169_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_038466559.1\|1536165_1536711_-	hypothetical protein	NA	NA	NA	NA
WP_038466565.1\|1537055_1538225_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_038466568.1\|1538396_1539005_-	hypothetical protein	NA	NA	NA	NA
WP_038466571.1\|1540239_1540647_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_123960888.1\|1540649_1541147_-	hypothetical protein	NA	NA	NA	NA
WP_038466577.1\|1541194_1542265_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_038466580.1\|1542419_1542617_-	hypothetical protein	NA	NA	NA	NA
WP_038466583.1\|1542792_1543047_-	hypothetical protein	NA	NA	NA	NA
WP_038466586.1\|1543049_1543511_-	hypothetical protein	NA	NA	NA	NA
WP_038466589.1\|1543685_1545086_-	hypothetical protein	NA	NA	NA	NA
WP_162179067.1\|1545966_1546800_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2149329 : 2223932

Staphylococcus_phage(15.38%)

tRNA,integrase,protease,transposase

attL 2148044:2148060|attR 2213118:2213134

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2148044:2148060	attL	NA	NA	NA	NA
WP_034098375.1\|2149329_2150634_-\|tRNA	tRNA lysidine(34) synthetase TilS	R4TVK3	Phaeocystis_globosa_virus	1.5e-17	25.1
WP_034098373.1\|2150775_2152062_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	4.6e-32	34.8
WP_034098402.1\|2152247_2153144_+	DUF4349 domain-containing protein	NA	NA	NA	NA
WP_011963735.1\|2153209_2153851_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_034098400.1\|2153851_2154421_-	hypothetical protein	NA	NA	NA	NA
WP_034098371.1\|2154426_2155605_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011963732.1\|2155604_2156693_-	AI-2E family transporter	NA	NA	NA	NA
WP_034098369.1\|2156774_2157770_-\|protease	zinc metalloprotease	A0A2K9KZL9	Tupanvirus	1.0e-15	33.5
WP_034098367.1\|2158071_2158710_-	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_011963729.1\|2158743_2159448_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_034098365.1\|2159449_2160472_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.9e-71	42.6
WP_052079116.1\|2160602_2165129_+	translocation/assembly module TamB	NA	NA	NA	NA
WP_011963726.1\|2165200_2166187_+	6-phosphofructokinase	NA	NA	NA	NA
WP_034098363.1\|2166247_2167249_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011963723.1\|2168465_2169077_+	hypothetical protein	NA	NA	NA	NA
WP_034098360.1\|2169491_2171027_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_011963721.1\|2171324_2172212_-	EamA family transporter	NA	NA	NA	NA
WP_034098358.1\|2172520_2174293_-	MFS transporter	NA	NA	NA	NA
WP_034098356.1\|2174409_2175339_+	hypothetical protein	NA	NA	NA	NA
WP_011963718.1\|2175832_2177230_-	class II fumarate hydratase	NA	NA	NA	NA
WP_011963717.1\|2177525_2177693_+	hypothetical protein	NA	NA	NA	NA
WP_034098352.1\|2178254_2180726_-	TonB-dependent receptor	NA	NA	NA	NA
WP_034098350.1\|2180883_2181225_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.6e-08	33.6
WP_034098395.1\|2181304_2182258_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011963713.1\|2182250_2183300_+	AMP-binding protein	NA	NA	NA	NA
WP_011963712.1\|2183324_2184320_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_034098348.1\|2184568_2184985_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.5e-21	43.8
WP_034098346.1\|2184986_2185601_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011963708.1\|2185729_2186203_-	hypothetical protein	NA	NA	NA	NA
WP_011963707.1\|2186266_2186590_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_034098344.1\|2186982_2187480_+	thiol peroxidase	NA	NA	NA	NA
WP_011963705.1\|2187482_2187863_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_034098341.1\|2188055_2190518_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	6.3e-70	42.6
WP_011963703.1\|2190522_2191164_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_034098337.1\|2191169_2192624_+	LptF/LptG family permease	NA	NA	NA	NA
WP_011963701.1\|2192610_2193747_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.3e-64	39.4
WP_038466889.1\|2194231_2195479_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.3e-36	36.1
WP_038466892.1\|2195855_2197310_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_052079117.1\|2197321_2198134_-	hypothetical protein	NA	NA	NA	NA
WP_038466895.1\|2198140_2199649_-	AAA family ATPase	NA	NA	NA	NA
WP_052079118.1\|2199645_2201334_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_038466898.1\|2201335_2202118_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_080731703.1\|2202114_2202957_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_038466907.1\|2204202_2207136_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_052079120.1\|2207154_2208558_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_038466910.1\|2208622_2209390_+	hypothetical protein	NA	NA	NA	NA
WP_038466914.1\|2209506_2210709_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.3e-46	46.5
WP_038466917.1\|2213264_2214467_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.6e-45	46.5
2213118:2213134	attR	NA	NA	NA	NA
WP_034098285.1\|2215840_2216530_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.1e-27	31.9
WP_166504501.1\|2222981_2223932_-\|transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	2.9e-07	24.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP007207.1|WP_123960885.1|1520990_1521212_-|hypothetical-protein

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Acr_ID: NZ_CP007207.1|WP_038466526.1|1522297_1522540_-|hypothetical-protein

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Acr_ID: NZ_CP007207.1|WP_038466529.1|1522529_1522793_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP007207.1|WP_123960885.1|1520990_1521212_-|hypothetical-protein

1520990_1521212_-

73 aa aa

1481126-1546800

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007207_6	Orphan	6.1\|1553211\|56\|NZ_CP007207\|CRISPRCasFinder	1553211-1553266	56	1539902-1539957	0
NZ_CP007207_7	Orphan	7.1\|1565415\|56\|NZ_CP007207\|CRISPRCasFinder	1565415-1565470	56	1539902-1539957	0

1. spacer 6.1|1553211|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

2. spacer 7.1|1565415|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

NZ_CP007207.1|WP_038466526.1|1522297_1522540_-|hypothetical-protein

1522297_1522540_-

80 aa aa

1481126-1546800

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007207_6	Orphan	6.1\|1553211\|56\|NZ_CP007207\|CRISPRCasFinder	1553211-1553266	56	1539902-1539957	0
NZ_CP007207_7	Orphan	7.1\|1565415\|56\|NZ_CP007207\|CRISPRCasFinder	1565415-1565470	56	1539902-1539957	0

1. spacer 6.1|1553211|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

2. spacer 7.1|1565415|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

NZ_CP007207.1|WP_038466529.1|1522529_1522793_-|hypothetical-protein

1522529_1522793_-

87 aa aa

1481126-1546800

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007207_6	Orphan	6.1\|1553211\|56\|NZ_CP007207\|CRISPRCasFinder	1553211-1553266	56	1539902-1539957	0
NZ_CP007207_7	Orphan	7.1\|1565415\|56\|NZ_CP007207\|CRISPRCasFinder	1565415-1565470	56	1539902-1539957	0

1. spacer 6.1|1553211|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

2. spacer 7.1|1565415|56|NZ_CP007207|CRISPRCasFinder matches to NZ_CP007207 position: 1539902-1539957, mismatch: 0

tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	CRISPR spacer
tttttaggtttcaattttcggcagttcaaaagttcagaatattttcagaagttttc	Protospacer
********************************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007207

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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